Multiple sequence alignment - TraesCS1B01G391500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G391500 chr1B 100.000 4724 0 0 1 4724 624736201 624731478 0.000000e+00 8724.0
1 TraesCS1B01G391500 chr1B 100.000 32 0 0 288 319 624735883 624735914 5.110000e-05 60.2
2 TraesCS1B01G391500 chr1A 93.813 1697 90 10 2493 4176 548566750 548565056 0.000000e+00 2538.0
3 TraesCS1B01G391500 chr1A 93.365 1055 54 11 1423 2473 548567785 548566743 0.000000e+00 1546.0
4 TraesCS1B01G391500 chr1A 91.929 508 16 7 789 1290 548568301 548567813 0.000000e+00 688.0
5 TraesCS1B01G391500 chr1A 88.491 530 48 11 4188 4706 548565000 548564473 3.100000e-176 628.0
6 TraesCS1B01G391500 chr1A 83.969 393 41 10 27 413 548569102 548568726 1.620000e-94 357.0
7 TraesCS1B01G391500 chr1A 76.471 187 21 13 419 594 465489946 465490120 3.920000e-11 80.5
8 TraesCS1B01G391500 chr1D 93.459 1697 97 9 2493 4176 454231298 454229603 0.000000e+00 2507.0
9 TraesCS1B01G391500 chr1D 92.308 1092 48 15 1386 2473 454232350 454231291 0.000000e+00 1519.0
10 TraesCS1B01G391500 chr1D 91.732 508 20 10 789 1290 454232952 454232461 0.000000e+00 686.0
11 TraesCS1B01G391500 chr1D 85.090 389 38 9 27 413 454233744 454233374 3.450000e-101 379.0
12 TraesCS1B01G391500 chrUn 84.350 377 37 11 1402 1769 33305846 33306209 2.710000e-92 350.0
13 TraesCS1B01G391500 chrUn 84.350 377 37 11 1402 1769 407258044 407258407 2.710000e-92 350.0
14 TraesCS1B01G391500 chr5B 83.820 377 39 11 1402 1769 149454811 149455174 5.860000e-89 339.0
15 TraesCS1B01G391500 chr5B 88.722 133 6 4 1157 1284 149454491 149454619 2.280000e-33 154.0
16 TraesCS1B01G391500 chr3B 83.820 377 39 11 1402 1769 813891598 813891235 5.860000e-89 339.0
17 TraesCS1B01G391500 chr7A 83.598 378 38 13 1402 1769 83011306 83010943 2.720000e-87 333.0
18 TraesCS1B01G391500 chr7A 76.087 184 25 12 427 594 515032842 515033022 1.410000e-10 78.7
19 TraesCS1B01G391500 chr6A 83.554 377 40 11 1402 1769 120985144 120985507 2.720000e-87 333.0
20 TraesCS1B01G391500 chr2A 84.762 105 12 4 427 528 496564576 496564473 8.360000e-18 102.0
21 TraesCS1B01G391500 chr2A 79.310 116 12 8 424 528 759742198 759742312 2.360000e-08 71.3
22 TraesCS1B01G391500 chr3D 77.202 193 25 15 423 603 508389310 508389125 1.400000e-15 95.3
23 TraesCS1B01G391500 chr3D 88.136 59 5 1 419 475 299626652 299626594 8.480000e-08 69.4
24 TraesCS1B01G391500 chr4B 82.243 107 13 3 419 523 613384309 613384411 2.340000e-13 87.9
25 TraesCS1B01G391500 chr4B 95.455 44 2 0 425 468 424692821 424692864 2.360000e-08 71.3
26 TraesCS1B01G391500 chr2D 81.481 108 11 6 425 528 367094300 367094198 3.920000e-11 80.5
27 TraesCS1B01G391500 chr7D 81.319 91 15 2 613 701 478595443 478595353 6.560000e-09 73.1
28 TraesCS1B01G391500 chr4D 80.000 105 13 5 424 528 499388136 499388232 2.360000e-08 71.3
29 TraesCS1B01G391500 chr2B 79.808 104 15 5 425 528 435631239 435631142 2.360000e-08 71.3
30 TraesCS1B01G391500 chr6D 100.000 31 0 0 1711 1741 194246734 194246704 1.840000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G391500 chr1B 624731478 624736201 4723 True 8724.00 8724 100.00000 1 4724 1 chr1B.!!$R1 4723
1 TraesCS1B01G391500 chr1A 548564473 548569102 4629 True 1151.40 2538 90.31340 27 4706 5 chr1A.!!$R1 4679
2 TraesCS1B01G391500 chr1D 454229603 454233744 4141 True 1272.75 2507 90.64725 27 4176 4 chr1D.!!$R1 4149
3 TraesCS1B01G391500 chr5B 149454491 149455174 683 False 246.50 339 86.27100 1157 1769 2 chr5B.!!$F1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 866 0.107831 AACAGCACTTTCGCCTACCA 59.892 50.0 0.00 0.00 0.0 3.25 F
2471 2685 0.035820 CTAACTGCGCCCTTGGGTTA 60.036 55.0 4.18 4.24 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2640 2854 0.698238 AAGCCTACATGTGCCTTGGA 59.302 50.0 9.11 0.0 0.0 3.53 R
4198 4474 0.249699 TGCGTTACCACCACAGACAG 60.250 55.0 0.00 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 5.471456 AGAAAGTACAAGAGACCATTTGCAG 59.529 40.000 0.00 0.00 0.00 4.41
125 127 2.226912 CGGCGGGTTGACTTGAATAAAA 59.773 45.455 0.00 0.00 0.00 1.52
126 128 3.119637 CGGCGGGTTGACTTGAATAAAAT 60.120 43.478 0.00 0.00 0.00 1.82
127 129 4.095185 CGGCGGGTTGACTTGAATAAAATA 59.905 41.667 0.00 0.00 0.00 1.40
128 130 5.337554 GGCGGGTTGACTTGAATAAAATAC 58.662 41.667 0.00 0.00 0.00 1.89
129 131 5.106078 GGCGGGTTGACTTGAATAAAATACA 60.106 40.000 0.00 0.00 0.00 2.29
130 132 6.383415 GCGGGTTGACTTGAATAAAATACAA 58.617 36.000 0.00 0.00 0.00 2.41
131 133 7.033185 GCGGGTTGACTTGAATAAAATACAAT 58.967 34.615 0.00 0.00 0.00 2.71
132 134 7.009174 GCGGGTTGACTTGAATAAAATACAATG 59.991 37.037 0.00 0.00 0.00 2.82
133 135 8.026607 CGGGTTGACTTGAATAAAATACAATGT 58.973 33.333 0.00 0.00 0.00 2.71
134 136 9.705290 GGGTTGACTTGAATAAAATACAATGTT 57.295 29.630 0.00 0.00 0.00 2.71
142 144 9.549509 TTGAATAAAATACAATGTTAGACGTGC 57.450 29.630 0.00 0.00 0.00 5.34
144 146 5.950758 AAAATACAATGTTAGACGTGCCA 57.049 34.783 0.00 0.00 0.00 4.92
145 147 6.509418 AAAATACAATGTTAGACGTGCCAT 57.491 33.333 0.00 0.00 0.00 4.40
150 152 5.182487 ACAATGTTAGACGTGCCATTATGA 58.818 37.500 0.00 0.00 0.00 2.15
249 251 7.804843 ATTCGTATAGATTATACTCCCTCGG 57.195 40.000 5.11 0.00 39.05 4.63
300 302 8.439971 ACAAAGATTGTATAATCCAGAGCCATA 58.560 33.333 8.45 0.00 43.27 2.74
301 303 9.458727 CAAAGATTGTATAATCCAGAGCCATAT 57.541 33.333 8.45 0.00 42.99 1.78
377 384 3.810310 ATAGAGAGGTCGCCTTTTCAG 57.190 47.619 0.00 0.00 31.76 3.02
390 397 6.581166 GTCGCCTTTTCAGTATAAAACCAAAG 59.419 38.462 0.00 0.00 0.00 2.77
421 453 2.992476 GGAGGCCTTCCTACAGACA 58.008 57.895 6.77 0.00 44.46 3.41
441 473 1.084370 CGGTTGTTCTGATCCCGAGC 61.084 60.000 0.00 0.00 41.08 5.03
442 474 0.250513 GGTTGTTCTGATCCCGAGCT 59.749 55.000 0.00 0.00 0.00 4.09
443 475 1.646189 GTTGTTCTGATCCCGAGCTC 58.354 55.000 2.73 2.73 0.00 4.09
444 476 1.066858 GTTGTTCTGATCCCGAGCTCA 60.067 52.381 15.40 0.00 0.00 4.26
445 477 1.489481 TGTTCTGATCCCGAGCTCAT 58.511 50.000 15.40 0.00 0.00 2.90
468 500 8.429493 CATGTGAGCTCAGATGAATAGTAAAA 57.571 34.615 37.87 1.16 46.80 1.52
504 547 6.403866 AAGTCTGAAAAACATATTGTGCCA 57.596 33.333 0.00 0.00 0.00 4.92
513 556 6.783892 AAACATATTGTGCCAAACATTGAC 57.216 33.333 0.00 0.00 38.99 3.18
517 560 6.935771 ACATATTGTGCCAAACATTGACAAAT 59.064 30.769 0.00 0.00 38.99 2.32
532 584 6.900568 TTGACAAATGTTTTGATTGACCAC 57.099 33.333 6.96 0.00 0.00 4.16
536 588 5.104982 ACAAATGTTTTGATTGACCACCACT 60.105 36.000 6.96 0.00 0.00 4.00
537 589 6.097554 ACAAATGTTTTGATTGACCACCACTA 59.902 34.615 6.96 0.00 0.00 2.74
557 609 5.408299 CACTAGATGACATTCGTGGAAAACA 59.592 40.000 0.00 0.00 0.00 2.83
562 614 1.959985 ACATTCGTGGAAAACATGGCA 59.040 42.857 0.00 0.00 36.71 4.92
563 615 2.363680 ACATTCGTGGAAAACATGGCAA 59.636 40.909 0.00 0.00 36.71 4.52
564 616 3.181471 ACATTCGTGGAAAACATGGCAAA 60.181 39.130 0.00 0.00 36.71 3.68
565 617 3.526931 TTCGTGGAAAACATGGCAAAA 57.473 38.095 0.00 0.00 36.71 2.44
566 618 3.090952 TCGTGGAAAACATGGCAAAAG 57.909 42.857 0.00 0.00 36.71 2.27
567 619 2.690497 TCGTGGAAAACATGGCAAAAGA 59.310 40.909 0.00 0.00 36.71 2.52
568 620 3.131223 TCGTGGAAAACATGGCAAAAGAA 59.869 39.130 0.00 0.00 36.71 2.52
569 621 3.868077 CGTGGAAAACATGGCAAAAGAAA 59.132 39.130 0.00 0.00 32.27 2.52
570 622 4.331168 CGTGGAAAACATGGCAAAAGAAAA 59.669 37.500 0.00 0.00 32.27 2.29
571 623 5.163814 CGTGGAAAACATGGCAAAAGAAAAA 60.164 36.000 0.00 0.00 32.27 1.94
572 624 6.027131 GTGGAAAACATGGCAAAAGAAAAAC 58.973 36.000 0.00 0.00 0.00 2.43
573 625 5.707298 TGGAAAACATGGCAAAAGAAAAACA 59.293 32.000 0.00 0.00 0.00 2.83
574 626 6.207417 TGGAAAACATGGCAAAAGAAAAACAA 59.793 30.769 0.00 0.00 0.00 2.83
575 627 7.094032 TGGAAAACATGGCAAAAGAAAAACAAT 60.094 29.630 0.00 0.00 0.00 2.71
576 628 7.220491 GGAAAACATGGCAAAAGAAAAACAATG 59.780 33.333 0.00 0.00 0.00 2.82
579 631 5.357596 ACATGGCAAAAGAAAAACAATGCTT 59.642 32.000 0.00 0.00 34.37 3.91
586 638 9.500864 GCAAAAGAAAAACAATGCTTCAAAATA 57.499 25.926 0.00 0.00 0.00 1.40
632 684 1.737838 TGCCACATCTTCCACGAATC 58.262 50.000 0.00 0.00 0.00 2.52
639 691 5.221322 CCACATCTTCCACGAATCTCATCTA 60.221 44.000 0.00 0.00 0.00 1.98
640 692 5.919707 CACATCTTCCACGAATCTCATCTAG 59.080 44.000 0.00 0.00 0.00 2.43
661 713 5.779529 AGTGATGAAGCTTTTCACACAAT 57.220 34.783 29.77 16.11 41.71 2.71
747 841 1.241165 TTTACTGACGTGAGCTCGGA 58.759 50.000 9.64 0.00 34.94 4.55
769 863 1.343142 TGAGAACAGCACTTTCGCCTA 59.657 47.619 0.00 0.00 0.00 3.93
772 866 0.107831 AACAGCACTTTCGCCTACCA 59.892 50.000 0.00 0.00 0.00 3.25
773 867 0.602905 ACAGCACTTTCGCCTACCAC 60.603 55.000 0.00 0.00 0.00 4.16
774 868 0.320771 CAGCACTTTCGCCTACCACT 60.321 55.000 0.00 0.00 0.00 4.00
775 869 0.396811 AGCACTTTCGCCTACCACTT 59.603 50.000 0.00 0.00 0.00 3.16
776 870 1.202770 AGCACTTTCGCCTACCACTTT 60.203 47.619 0.00 0.00 0.00 2.66
777 871 1.197036 GCACTTTCGCCTACCACTTTC 59.803 52.381 0.00 0.00 0.00 2.62
778 872 1.804748 CACTTTCGCCTACCACTTTCC 59.195 52.381 0.00 0.00 0.00 3.13
779 873 1.418637 ACTTTCGCCTACCACTTTCCA 59.581 47.619 0.00 0.00 0.00 3.53
780 874 2.039879 ACTTTCGCCTACCACTTTCCAT 59.960 45.455 0.00 0.00 0.00 3.41
781 875 2.107950 TTCGCCTACCACTTTCCATG 57.892 50.000 0.00 0.00 0.00 3.66
782 876 0.251916 TCGCCTACCACTTTCCATGG 59.748 55.000 4.97 4.97 43.43 3.66
783 877 0.748005 CGCCTACCACTTTCCATGGG 60.748 60.000 13.02 0.00 41.97 4.00
784 878 0.395724 GCCTACCACTTTCCATGGGG 60.396 60.000 13.02 7.20 41.97 4.96
785 879 1.295020 CCTACCACTTTCCATGGGGA 58.705 55.000 13.02 0.00 41.97 4.81
786 880 1.212935 CCTACCACTTTCCATGGGGAG 59.787 57.143 13.02 12.48 46.01 4.30
787 881 1.212935 CTACCACTTTCCATGGGGAGG 59.787 57.143 13.02 12.59 46.01 4.30
788 882 1.380380 CCACTTTCCATGGGGAGGC 60.380 63.158 13.02 0.00 46.01 4.70
800 894 1.076485 GGGAGGCCATGTTCTGCAT 60.076 57.895 5.01 0.00 38.60 3.96
806 900 1.547372 GGCCATGTTCTGCATTTCACT 59.453 47.619 0.00 0.00 35.19 3.41
833 927 1.063649 CCACCACGGATACTCGTCG 59.936 63.158 0.00 0.00 41.86 5.12
836 930 0.449388 ACCACGGATACTCGTCGAAC 59.551 55.000 0.00 0.00 41.86 3.95
838 932 1.531912 CACGGATACTCGTCGAACAC 58.468 55.000 0.00 0.00 41.86 3.32
840 934 0.448990 CGGATACTCGTCGAACACCA 59.551 55.000 0.00 0.00 0.00 4.17
851 945 0.661020 CGAACACCAAAGTCCACCAC 59.339 55.000 0.00 0.00 0.00 4.16
852 946 1.757682 GAACACCAAAGTCCACCACA 58.242 50.000 0.00 0.00 0.00 4.17
853 947 1.404035 GAACACCAAAGTCCACCACAC 59.596 52.381 0.00 0.00 0.00 3.82
1027 1121 3.443925 CGCTGAGACCTCGCCTCA 61.444 66.667 0.00 0.00 38.24 3.86
1173 1273 1.009829 GCATGGAGGCGTACAAGAAG 58.990 55.000 0.00 0.00 0.00 2.85
1215 1315 2.464459 CGGCGCTGATTGGAAGACC 61.464 63.158 11.90 0.00 0.00 3.85
1275 1380 2.872858 GGAGTTCGGGTGAGCATTATTC 59.127 50.000 0.00 0.00 0.00 1.75
1290 1395 4.378459 GCATTATTCGGCAGTAACCATAGC 60.378 45.833 0.00 0.00 0.00 2.97
1291 1396 4.409718 TTATTCGGCAGTAACCATAGCA 57.590 40.909 0.00 0.00 0.00 3.49
1292 1397 2.018542 TTCGGCAGTAACCATAGCAC 57.981 50.000 0.00 0.00 0.00 4.40
1293 1398 0.899019 TCGGCAGTAACCATAGCACA 59.101 50.000 0.00 0.00 0.00 4.57
1294 1399 1.484653 TCGGCAGTAACCATAGCACAT 59.515 47.619 0.00 0.00 0.00 3.21
1295 1400 2.696187 TCGGCAGTAACCATAGCACATA 59.304 45.455 0.00 0.00 0.00 2.29
1312 1417 6.831976 AGCACATAACTAATTTCTAGGGGAG 58.168 40.000 0.00 0.00 0.00 4.30
1317 1422 9.225682 ACATAACTAATTTCTAGGGGAGATGAA 57.774 33.333 0.00 0.00 32.88 2.57
1320 1425 7.937700 ACTAATTTCTAGGGGAGATGAATGA 57.062 36.000 0.00 0.00 32.88 2.57
1322 1427 4.696479 TTTCTAGGGGAGATGAATGAGC 57.304 45.455 0.00 0.00 32.88 4.26
1323 1428 2.614259 TCTAGGGGAGATGAATGAGCC 58.386 52.381 0.00 0.00 0.00 4.70
1324 1429 1.274728 CTAGGGGAGATGAATGAGCCG 59.725 57.143 0.00 0.00 0.00 5.52
1325 1430 1.072159 GGGGAGATGAATGAGCCGG 59.928 63.158 0.00 0.00 0.00 6.13
1327 1432 1.410850 GGGAGATGAATGAGCCGGGA 61.411 60.000 2.18 0.00 0.00 5.14
1328 1433 0.250081 GGAGATGAATGAGCCGGGAC 60.250 60.000 2.18 0.00 0.00 4.46
1329 1434 0.465705 GAGATGAATGAGCCGGGACA 59.534 55.000 2.18 0.00 0.00 4.02
1330 1435 0.179000 AGATGAATGAGCCGGGACAC 59.821 55.000 2.18 0.00 0.00 3.67
1331 1436 1.153369 ATGAATGAGCCGGGACACG 60.153 57.895 2.18 0.00 43.80 4.49
1332 1437 3.195698 GAATGAGCCGGGACACGC 61.196 66.667 2.18 0.00 42.52 5.34
1341 1446 2.867472 GGGACACGCATTGTTCGG 59.133 61.111 0.00 0.00 39.17 4.30
1345 1450 1.228003 ACACGCATTGTTCGGGGAA 60.228 52.632 0.00 0.00 33.09 3.97
1352 1457 1.470098 CATTGTTCGGGGAAAGCTGAG 59.530 52.381 0.00 0.00 0.00 3.35
1375 1480 4.853064 CGAATAGCTCGTATCGTTTCAG 57.147 45.455 0.00 0.00 42.89 3.02
1381 1486 2.673043 GCTCGTATCGTTTCAGGGTTGA 60.673 50.000 0.00 0.00 0.00 3.18
1382 1487 3.782046 CTCGTATCGTTTCAGGGTTGAT 58.218 45.455 0.00 0.00 32.27 2.57
1384 1489 5.524971 TCGTATCGTTTCAGGGTTGATAT 57.475 39.130 0.00 0.00 32.27 1.63
1399 1599 8.152898 CAGGGTTGATATCTGATGTCTGATTTA 58.847 37.037 14.31 0.00 36.25 1.40
1400 1600 8.373981 AGGGTTGATATCTGATGTCTGATTTAG 58.626 37.037 14.31 0.00 36.25 1.85
1459 1663 3.507233 GTGGAGCACAGATCATGGAAAAA 59.493 43.478 0.00 0.00 34.08 1.94
1492 1696 6.852345 GCATTTTGTTCTATTTTGTTTGCCTG 59.148 34.615 0.00 0.00 0.00 4.85
1566 1770 6.206634 TGTGAAAAATCCTACTTCGCTGAATT 59.793 34.615 0.00 0.00 32.15 2.17
1621 1831 4.700213 TGAGCTAGCAGTTGATTTAAACCC 59.300 41.667 18.83 0.00 0.00 4.11
1670 1880 4.202101 ACGTTCAACAAATCATGCCTGAAA 60.202 37.500 0.00 0.00 36.48 2.69
1757 1967 1.133216 TCAGAATGAGAAGGCGAGACG 59.867 52.381 0.00 0.00 42.56 4.18
1761 1971 0.457851 ATGAGAAGGCGAGACGAAGG 59.542 55.000 0.00 0.00 0.00 3.46
1790 2000 6.803366 ATTAGTACGGGAGGTCATAGTTTT 57.197 37.500 0.00 0.00 0.00 2.43
1875 2086 4.650754 AATTGAGGAGCATTCAATCTGC 57.349 40.909 9.76 0.00 42.73 4.26
1902 2113 5.350504 TTTTCTTGGAATGCTGGTTTTGA 57.649 34.783 0.00 0.00 0.00 2.69
1914 2125 4.588106 TGCTGGTTTTGAAGATGATTTCCA 59.412 37.500 0.00 0.00 0.00 3.53
1945 2156 0.320050 TTCCAAATGGCGGCCTTTTC 59.680 50.000 24.99 0.00 30.10 2.29
1954 2165 1.135286 GGCGGCCTTTTCTGATTTCTG 60.135 52.381 12.87 0.00 0.00 3.02
1956 2167 2.414691 GCGGCCTTTTCTGATTTCTGTC 60.415 50.000 0.00 0.00 0.00 3.51
2020 2231 2.250031 TCTTTGTTTGCATGCCCTCAT 58.750 42.857 16.68 0.00 0.00 2.90
2093 2304 4.567971 TGGGATGTCAAATGTGAAATTGC 58.432 39.130 0.00 0.00 31.32 3.56
2172 2383 3.714280 TCTATTTGGTAGCCCAGTATGCA 59.286 43.478 0.00 0.00 43.15 3.96
2227 2438 2.840038 TGCTGTGATTCCCTCATACTGT 59.160 45.455 0.00 0.00 35.97 3.55
2265 2476 9.532494 TGGAATAAAGGATCTCTGAAAATTTCA 57.468 29.630 8.25 8.25 38.17 2.69
2274 2485 9.136952 GGATCTCTGAAAATTTCAAATCTTGTG 57.863 33.333 9.85 0.00 39.58 3.33
2290 2501 1.921982 TGTGCAACAGTGGGCATAAT 58.078 45.000 13.80 0.00 45.67 1.28
2339 2552 2.848302 GCGAACATTATGCTGAACTTGC 59.152 45.455 0.00 0.00 0.00 4.01
2383 2596 5.606348 AACTGATCCTTTGGAGCTACTAG 57.394 43.478 0.00 0.00 39.11 2.57
2409 2622 7.201696 GGTGAAAGAGTTTGACTTGTATGACAA 60.202 37.037 0.00 0.00 36.54 3.18
2411 2624 8.902806 TGAAAGAGTTTGACTTGTATGACAATT 58.097 29.630 0.00 0.00 37.48 2.32
2425 2639 7.394016 TGTATGACAATTCTCTTAAGCCAAGA 58.606 34.615 0.00 0.00 41.10 3.02
2449 2663 5.609423 ACTCTTAGTCATGATCATTCAGCC 58.391 41.667 5.16 0.00 34.73 4.85
2456 2670 6.054295 AGTCATGATCATTCAGCCTTCTAAC 58.946 40.000 5.16 0.00 34.73 2.34
2468 2682 1.002624 TTCTAACTGCGCCCTTGGG 60.003 57.895 4.18 0.32 0.00 4.12
2469 2683 1.774894 TTCTAACTGCGCCCTTGGGT 61.775 55.000 4.18 0.00 0.00 4.51
2470 2684 1.303317 CTAACTGCGCCCTTGGGTT 60.303 57.895 4.18 3.23 0.00 4.11
2471 2685 0.035820 CTAACTGCGCCCTTGGGTTA 60.036 55.000 4.18 4.24 0.00 2.85
2472 2686 0.400975 TAACTGCGCCCTTGGGTTAA 59.599 50.000 4.18 0.00 0.00 2.01
2473 2687 0.893727 AACTGCGCCCTTGGGTTAAG 60.894 55.000 4.18 5.07 36.11 1.85
2474 2688 1.303317 CTGCGCCCTTGGGTTAAGT 60.303 57.895 4.18 0.00 34.45 2.24
2475 2689 1.586154 CTGCGCCCTTGGGTTAAGTG 61.586 60.000 4.18 0.00 34.45 3.16
2476 2690 1.602605 GCGCCCTTGGGTTAAGTGT 60.603 57.895 7.61 0.00 34.45 3.55
2477 2691 1.862602 GCGCCCTTGGGTTAAGTGTG 61.863 60.000 7.61 0.00 34.45 3.82
2478 2692 1.241315 CGCCCTTGGGTTAAGTGTGG 61.241 60.000 7.61 0.00 34.45 4.17
2479 2693 1.532604 GCCCTTGGGTTAAGTGTGGC 61.533 60.000 7.61 0.00 35.20 5.01
2480 2694 0.898326 CCCTTGGGTTAAGTGTGGCC 60.898 60.000 0.00 0.00 34.45 5.36
2481 2695 0.178975 CCTTGGGTTAAGTGTGGCCA 60.179 55.000 0.00 0.00 34.45 5.36
2482 2696 1.549950 CCTTGGGTTAAGTGTGGCCAT 60.550 52.381 9.72 0.00 34.45 4.40
2483 2697 1.545582 CTTGGGTTAAGTGTGGCCATG 59.454 52.381 9.72 0.00 0.00 3.66
2484 2698 0.897863 TGGGTTAAGTGTGGCCATGC 60.898 55.000 9.72 4.82 0.00 4.06
2485 2699 0.611896 GGGTTAAGTGTGGCCATGCT 60.612 55.000 9.72 7.56 0.00 3.79
2486 2700 0.527565 GGTTAAGTGTGGCCATGCTG 59.472 55.000 9.72 0.00 0.00 4.41
2487 2701 1.247567 GTTAAGTGTGGCCATGCTGT 58.752 50.000 9.72 4.36 0.00 4.40
2488 2702 1.200020 GTTAAGTGTGGCCATGCTGTC 59.800 52.381 9.72 0.00 0.00 3.51
2489 2703 0.399833 TAAGTGTGGCCATGCTGTCA 59.600 50.000 9.72 0.00 0.00 3.58
2490 2704 0.467844 AAGTGTGGCCATGCTGTCAA 60.468 50.000 9.72 0.00 0.00 3.18
2491 2705 0.467844 AGTGTGGCCATGCTGTCAAA 60.468 50.000 9.72 0.00 0.00 2.69
2492 2706 0.604578 GTGTGGCCATGCTGTCAAAT 59.395 50.000 9.72 0.00 0.00 2.32
2493 2707 1.001181 GTGTGGCCATGCTGTCAAATT 59.999 47.619 9.72 0.00 0.00 1.82
2494 2708 1.001068 TGTGGCCATGCTGTCAAATTG 59.999 47.619 9.72 0.00 0.00 2.32
2495 2709 0.609151 TGGCCATGCTGTCAAATTGG 59.391 50.000 0.00 0.00 0.00 3.16
2503 2717 3.988819 TGCTGTCAAATTGGTTAAAGCC 58.011 40.909 0.00 0.00 0.00 4.35
2511 2725 4.806640 AATTGGTTAAAGCCCTGTGATG 57.193 40.909 0.00 0.00 0.00 3.07
2520 2734 5.712152 AAAGCCCTGTGATGAAGTTTTAG 57.288 39.130 0.00 0.00 0.00 1.85
2577 2791 7.915397 GTCAGTTCAAATTGTTAGTTCATGTGT 59.085 33.333 0.00 0.00 0.00 3.72
2598 2812 4.464244 TGTTGTGGACTTTTCAAACCATCA 59.536 37.500 0.00 0.00 34.87 3.07
2640 2854 9.499479 CTCTCTGCCAGATATGTTATTTATGTT 57.501 33.333 0.00 0.00 0.00 2.71
2643 2857 8.217111 TCTGCCAGATATGTTATTTATGTTCCA 58.783 33.333 0.00 0.00 0.00 3.53
2656 2870 2.198827 TGTTCCAAGGCACATGTAGG 57.801 50.000 0.00 0.00 0.00 3.18
2657 2871 0.811281 GTTCCAAGGCACATGTAGGC 59.189 55.000 0.00 5.88 0.00 3.93
2658 2872 0.698238 TTCCAAGGCACATGTAGGCT 59.302 50.000 15.34 15.34 44.54 4.58
2663 2877 2.698855 AGGCACATGTAGGCTTGTAG 57.301 50.000 15.34 0.00 38.98 2.74
2664 2878 1.017387 GGCACATGTAGGCTTGTAGC 58.983 55.000 0.00 0.00 41.46 3.58
2665 2879 1.678728 GGCACATGTAGGCTTGTAGCA 60.679 52.381 0.00 0.00 44.75 3.49
2666 2880 1.398390 GCACATGTAGGCTTGTAGCAC 59.602 52.381 0.00 0.00 44.75 4.40
2667 2881 2.698803 CACATGTAGGCTTGTAGCACA 58.301 47.619 0.00 0.00 44.75 4.57
2721 2950 6.817184 TGCAGGTAGATACTCTATTTTGGAC 58.183 40.000 0.00 0.00 30.76 4.02
2743 2972 6.128418 GGACTTCTCTTTCTACATTGTGAAGC 60.128 42.308 0.00 0.00 35.03 3.86
2769 2998 5.944599 TGAACACACCAACCTTGTTACTTTA 59.055 36.000 0.00 0.00 33.59 1.85
2779 3008 9.511144 CCAACCTTGTTACTTTACACTAAAAAG 57.489 33.333 0.00 0.00 39.38 2.27
2795 3025 8.989980 ACACTAAAAAGAATTGCACTCTACTAC 58.010 33.333 0.00 0.00 0.00 2.73
2848 3078 4.082408 GTGTGTTCCCTATGGGCTAAAAAC 60.082 45.833 0.00 0.00 43.94 2.43
2872 3102 8.306680 ACGTTATGCTACATGTTTACATATCC 57.693 34.615 2.30 3.80 34.26 2.59
2881 3111 6.198687 ACATGTTTACATATCCGCAATTTCG 58.801 36.000 0.00 0.00 34.26 3.46
2883 3113 6.905544 TGTTTACATATCCGCAATTTCGTA 57.094 33.333 0.00 0.00 0.00 3.43
2884 3114 6.939627 TGTTTACATATCCGCAATTTCGTAG 58.060 36.000 0.00 0.00 0.00 3.51
2885 3115 6.757478 TGTTTACATATCCGCAATTTCGTAGA 59.243 34.615 0.00 0.00 0.00 2.59
2886 3116 7.439955 TGTTTACATATCCGCAATTTCGTAGAT 59.560 33.333 0.00 0.00 35.04 1.98
2887 3117 7.956420 TTACATATCCGCAATTTCGTAGATT 57.044 32.000 0.00 0.00 35.04 2.40
2888 3118 6.467723 ACATATCCGCAATTTCGTAGATTC 57.532 37.500 0.00 0.00 35.04 2.52
2889 3119 5.408604 ACATATCCGCAATTTCGTAGATTCC 59.591 40.000 0.00 0.00 35.04 3.01
2890 3120 2.198406 TCCGCAATTTCGTAGATTCCG 58.802 47.619 0.00 0.00 35.04 4.30
2891 3121 1.260561 CCGCAATTTCGTAGATTCCGG 59.739 52.381 0.00 0.00 35.04 5.14
2904 3137 3.496331 AGATTCCGGTGTTTCCACAAAT 58.504 40.909 0.00 0.00 43.71 2.32
2942 3175 2.489722 GTGAGCAGTCCCTTTTCAATCC 59.510 50.000 0.00 0.00 0.00 3.01
2946 3179 2.833943 GCAGTCCCTTTTCAATCCCAAT 59.166 45.455 0.00 0.00 0.00 3.16
2972 3205 2.162681 GTAGCAAATCTGGCTGTTGGT 58.837 47.619 0.00 5.15 42.62 3.67
2974 3207 2.162681 AGCAAATCTGGCTGTTGGTAC 58.837 47.619 0.00 0.00 40.80 3.34
2975 3208 1.135689 GCAAATCTGGCTGTTGGTACG 60.136 52.381 0.00 0.00 0.00 3.67
2983 3216 2.271800 GGCTGTTGGTACGATCTCAAG 58.728 52.381 0.00 0.00 0.00 3.02
3024 3257 5.867903 TCAATTGGTTTGTTCACAGGAAT 57.132 34.783 5.42 0.00 36.65 3.01
3043 3276 7.992608 ACAGGAATTATTATGTGTGATACAGCA 59.007 33.333 0.00 0.00 43.80 4.41
3070 3303 9.141400 GATATATACACCTTAAGCAGTTACAGC 57.859 37.037 0.00 0.00 0.00 4.40
3153 3386 5.438761 ACAGTTGTTAATCTGAAGGTTGC 57.561 39.130 10.65 0.00 35.84 4.17
3183 3416 9.820725 TTTGCTCCAAATTCCATATATTTCAAG 57.179 29.630 0.00 0.00 0.00 3.02
3208 3441 9.668497 AGAGGAAACTATACTTTTATGTGGAAC 57.332 33.333 0.00 0.00 44.43 3.62
3210 3443 8.387813 AGGAAACTATACTTTTATGTGGAACCA 58.612 33.333 0.00 0.00 40.61 3.67
3211 3444 9.185680 GGAAACTATACTTTTATGTGGAACCAT 57.814 33.333 0.00 0.00 34.36 3.55
3213 3446 8.433421 AACTATACTTTTATGTGGAACCATCG 57.567 34.615 0.00 0.00 34.36 3.84
3215 3448 3.417101 ACTTTTATGTGGAACCATCGCA 58.583 40.909 0.00 0.00 34.36 5.10
3238 3471 8.803799 CGCAGTGTTCAAGTAAAACTAAAATTT 58.196 29.630 0.00 0.00 0.00 1.82
3278 3511 3.119388 CCACATGTTATTCTGGCACTTGG 60.119 47.826 0.00 0.00 0.00 3.61
3290 3523 4.530553 TCTGGCACTTGGTAGATTCTTGTA 59.469 41.667 0.00 0.00 0.00 2.41
3362 3595 2.075338 CTTGTCTCAGGAAGCAGAAGC 58.925 52.381 0.00 0.00 42.56 3.86
3408 3641 7.778470 AGTAGAGAAACAGAAACAACTTGAG 57.222 36.000 0.00 0.00 0.00 3.02
3410 3643 5.501156 AGAGAAACAGAAACAACTTGAGGT 58.499 37.500 0.00 0.00 0.00 3.85
3425 3658 2.872732 TGAGGTCGACTCTGTTAAGGT 58.127 47.619 16.46 0.00 46.72 3.50
3472 3705 8.709646 CAACAGTTTTAGTCAGGTTAGATACAC 58.290 37.037 0.00 0.00 0.00 2.90
3474 3707 8.088981 ACAGTTTTAGTCAGGTTAGATACACTG 58.911 37.037 0.00 0.00 33.24 3.66
3501 3734 4.156008 GGTGTCGTTAAGGAAATTGCAGAT 59.844 41.667 0.00 0.00 0.00 2.90
3517 3750 6.395426 TTGCAGATGACAAAATGAGAAGTT 57.605 33.333 0.00 0.00 0.00 2.66
3528 3761 3.636153 ATGAGAAGTTCTGCCCTTACC 57.364 47.619 10.90 0.00 0.00 2.85
3583 3816 1.344114 CTCCTGATAAGGCCTCTGCTC 59.656 57.143 5.23 0.86 37.74 4.26
3591 3824 0.480252 AGGCCTCTGCTCCAAAAAGT 59.520 50.000 0.00 0.00 37.74 2.66
3596 3829 2.094854 CCTCTGCTCCAAAAAGTGATGC 60.095 50.000 0.00 0.00 0.00 3.91
3648 3881 2.898729 AGGACATCAAGGATGCTACG 57.101 50.000 6.15 0.00 43.15 3.51
3652 3885 4.130118 GGACATCAAGGATGCTACGAATT 58.870 43.478 6.15 0.00 43.15 2.17
3753 3986 1.656587 TGGGGTGCTTGTAGTGATCT 58.343 50.000 0.00 0.00 0.00 2.75
3755 3988 2.027192 TGGGGTGCTTGTAGTGATCTTC 60.027 50.000 0.00 0.00 0.00 2.87
3874 4107 5.082425 AGCATCATTTCTTTTTGAGGGAGT 58.918 37.500 0.00 0.00 0.00 3.85
3955 4188 4.584638 TTGCTCCAGGTTGGTGTATATT 57.415 40.909 0.00 0.00 39.03 1.28
4121 4354 6.648725 CCAAAACATGTTTATTGGTTGGTAGG 59.351 38.462 24.80 10.83 32.72 3.18
4147 4380 1.412453 TAGGCCAACCGTCTTGTGGT 61.412 55.000 5.01 0.00 42.98 4.16
4176 4409 9.698309 CAGGTTACACTGGATAATCATAACTAG 57.302 37.037 0.00 0.00 34.84 2.57
4178 4411 9.915629 GGTTACACTGGATAATCATAACTAGAG 57.084 37.037 0.00 0.00 0.00 2.43
4193 4451 9.634021 TCATAACTAGAGTGTAAGATCTGATGT 57.366 33.333 0.00 0.00 0.00 3.06
4204 4480 9.457110 GTGTAAGATCTGATGTATTACTGTCTG 57.543 37.037 0.00 0.00 0.00 3.51
4229 4506 4.540359 TGGTAACGCAATGTACCTAACT 57.460 40.909 1.86 0.00 42.51 2.24
4236 4513 3.617263 CGCAATGTACCTAACTTCAGGTC 59.383 47.826 0.00 0.00 46.34 3.85
4255 4532 6.831664 AGGTCTTCCCTGTGAAATACATAT 57.168 37.500 0.00 0.00 44.08 1.78
4256 4533 7.931015 AGGTCTTCCCTGTGAAATACATATA 57.069 36.000 0.00 0.00 44.08 0.86
4257 4534 8.511748 AGGTCTTCCCTGTGAAATACATATAT 57.488 34.615 0.00 0.00 44.08 0.86
4258 4535 9.615660 AGGTCTTCCCTGTGAAATACATATATA 57.384 33.333 0.00 0.00 44.08 0.86
4293 4572 5.759059 TGAGCCAGAATTCCTTGTATCATT 58.241 37.500 0.65 0.00 0.00 2.57
4307 4586 6.092533 CCTTGTATCATTTGTCATTTTTGCCC 59.907 38.462 0.00 0.00 0.00 5.36
4310 4589 6.873076 TGTATCATTTGTCATTTTTGCCCTTC 59.127 34.615 0.00 0.00 0.00 3.46
4318 4597 3.445805 TCATTTTTGCCCTTCCGATTACC 59.554 43.478 0.00 0.00 0.00 2.85
4322 4602 4.447138 TTTGCCCTTCCGATTACCATAT 57.553 40.909 0.00 0.00 0.00 1.78
4324 4604 2.028476 TGCCCTTCCGATTACCATATCG 60.028 50.000 0.00 0.00 45.27 2.92
4345 4625 1.414158 GCTATGGGCACTCTGGTCTA 58.586 55.000 0.00 0.00 41.35 2.59
4355 4635 6.101150 TGGGCACTCTGGTCTATATATGTTTT 59.899 38.462 0.00 0.00 0.00 2.43
4356 4636 6.651225 GGGCACTCTGGTCTATATATGTTTTC 59.349 42.308 0.00 0.00 0.00 2.29
4369 4649 2.871096 TGTTTTCGTAGGAGGCCAAT 57.129 45.000 5.01 0.00 0.00 3.16
4422 4702 4.647424 TGTCGAAAAACTTCCATTTGCT 57.353 36.364 0.00 0.00 0.00 3.91
4496 4778 7.883311 ACTAATAAATGGTGAGGTATATGCCAC 59.117 37.037 12.79 6.47 31.47 5.01
4498 4780 4.518278 AATGGTGAGGTATATGCCACAA 57.482 40.909 11.31 0.00 31.24 3.33
4500 4782 3.884895 TGGTGAGGTATATGCCACAAAG 58.115 45.455 11.31 0.00 31.24 2.77
4504 4786 4.096382 GTGAGGTATATGCCACAAAGGTTG 59.904 45.833 11.31 0.00 40.61 3.77
4506 4788 4.672899 AGGTATATGCCACAAAGGTTGTT 58.327 39.130 12.79 0.00 43.23 2.83
4511 4793 1.111277 GCCACAAAGGTTGTTCCACT 58.889 50.000 0.00 0.00 43.23 4.00
4530 4812 8.360390 GTTCCACTGAAAACCTCTTTCAAATAT 58.640 33.333 1.94 0.00 37.89 1.28
4531 4813 7.885297 TCCACTGAAAACCTCTTTCAAATATG 58.115 34.615 1.94 0.00 37.89 1.78
4669 4951 7.985634 TTTTCTTTCTTTCTGGAATTCAACG 57.014 32.000 7.93 0.00 0.00 4.10
4670 4952 6.693315 TTCTTTCTTTCTGGAATTCAACGT 57.307 33.333 7.93 0.00 0.00 3.99
4674 4961 4.456535 TCTTTCTGGAATTCAACGTGGAA 58.543 39.130 8.06 8.06 0.00 3.53
4685 4972 4.074627 TCAACGTGGAAAAGGTGTATCA 57.925 40.909 0.00 0.00 0.00 2.15
4688 4975 3.259064 ACGTGGAAAAGGTGTATCATCG 58.741 45.455 0.00 0.00 0.00 3.84
4695 4982 7.225931 GTGGAAAAGGTGTATCATCGCTAATAA 59.774 37.037 0.00 0.00 0.00 1.40
4709 4996 9.554395 TCATCGCTAATAAAAGGATACAATTGA 57.446 29.630 13.59 0.00 41.41 2.57
4710 4997 9.599322 CATCGCTAATAAAAGGATACAATTGAC 57.401 33.333 13.59 3.13 41.41 3.18
4711 4998 8.725405 TCGCTAATAAAAGGATACAATTGACA 57.275 30.769 13.59 0.00 41.41 3.58
4712 4999 8.826710 TCGCTAATAAAAGGATACAATTGACAG 58.173 33.333 13.59 0.00 41.41 3.51
4713 5000 8.612619 CGCTAATAAAAGGATACAATTGACAGT 58.387 33.333 13.59 0.00 41.41 3.55
4714 5001 9.722056 GCTAATAAAAGGATACAATTGACAGTG 57.278 33.333 13.59 0.00 41.41 3.66
4717 5004 5.964958 AAAGGATACAATTGACAGTGTGG 57.035 39.130 13.59 0.00 41.41 4.17
4718 5005 4.908601 AGGATACAATTGACAGTGTGGA 57.091 40.909 13.59 0.00 41.41 4.02
4719 5006 4.836825 AGGATACAATTGACAGTGTGGAG 58.163 43.478 13.59 0.00 41.41 3.86
4720 5007 4.532126 AGGATACAATTGACAGTGTGGAGA 59.468 41.667 13.59 0.00 41.41 3.71
4721 5008 5.190528 AGGATACAATTGACAGTGTGGAGAT 59.809 40.000 13.59 0.00 41.41 2.75
4722 5009 5.295292 GGATACAATTGACAGTGTGGAGATG 59.705 44.000 13.59 0.00 32.24 2.90
4723 5010 4.090761 ACAATTGACAGTGTGGAGATGT 57.909 40.909 13.59 0.00 27.46 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 8.459635 GGTCTCTTGTACTTTCTCAAACTTTTT 58.540 33.333 0.00 0.00 0.00 1.94
24 25 7.610305 TGGTCTCTTGTACTTTCTCAAACTTTT 59.390 33.333 0.00 0.00 0.00 2.27
25 26 7.110155 TGGTCTCTTGTACTTTCTCAAACTTT 58.890 34.615 0.00 0.00 0.00 2.66
119 121 8.046294 TGGCACGTCTAACATTGTATTTTATT 57.954 30.769 0.00 0.00 0.00 1.40
125 127 6.989759 TCATAATGGCACGTCTAACATTGTAT 59.010 34.615 11.55 0.00 35.40 2.29
126 128 6.342111 TCATAATGGCACGTCTAACATTGTA 58.658 36.000 11.55 0.00 35.40 2.41
127 129 5.182487 TCATAATGGCACGTCTAACATTGT 58.818 37.500 11.55 4.83 35.40 2.71
128 130 5.733226 TCATAATGGCACGTCTAACATTG 57.267 39.130 11.55 1.02 35.40 2.82
129 131 6.291377 AGATCATAATGGCACGTCTAACATT 58.709 36.000 0.00 8.13 37.34 2.71
130 132 5.858381 AGATCATAATGGCACGTCTAACAT 58.142 37.500 0.00 0.00 0.00 2.71
131 133 5.069119 AGAGATCATAATGGCACGTCTAACA 59.931 40.000 0.00 0.00 0.00 2.41
132 134 5.533482 AGAGATCATAATGGCACGTCTAAC 58.467 41.667 0.00 0.00 0.00 2.34
133 135 5.791336 AGAGATCATAATGGCACGTCTAA 57.209 39.130 0.00 0.00 0.00 2.10
134 136 8.575649 TTATAGAGATCATAATGGCACGTCTA 57.424 34.615 0.00 0.00 0.00 2.59
169 171 3.352648 AGTGGTATGGTTTTGGATTCGG 58.647 45.455 0.00 0.00 0.00 4.30
171 173 7.639113 TGATTAGTGGTATGGTTTTGGATTC 57.361 36.000 0.00 0.00 0.00 2.52
173 175 8.608185 ATTTGATTAGTGGTATGGTTTTGGAT 57.392 30.769 0.00 0.00 0.00 3.41
174 176 9.707957 ATATTTGATTAGTGGTATGGTTTTGGA 57.292 29.630 0.00 0.00 0.00 3.53
228 230 8.498054 TTTACCGAGGGAGTATAATCTATACG 57.502 38.462 0.00 2.32 44.41 3.06
275 277 7.756395 ATGGCTCTGGATTATACAATCTTTG 57.244 36.000 0.00 0.00 40.45 2.77
341 348 6.328672 ACCTCTCTATACATGGCTCTGAATTT 59.671 38.462 0.00 0.00 0.00 1.82
355 362 4.098196 ACTGAAAAGGCGACCTCTCTATAC 59.902 45.833 0.00 0.00 30.89 1.47
360 367 3.528597 ATACTGAAAAGGCGACCTCTC 57.471 47.619 0.00 1.17 30.89 3.20
390 397 4.202274 GGAAGGCCTCCTCTAATCAGTAAC 60.202 50.000 5.23 0.00 41.61 2.50
417 449 1.002087 GGGATCAGAACAACCGTGTCT 59.998 52.381 0.00 0.00 36.80 3.41
421 453 0.246635 CTCGGGATCAGAACAACCGT 59.753 55.000 0.00 0.00 44.54 4.83
441 473 5.845103 ACTATTCATCTGAGCTCACATGAG 58.155 41.667 26.87 20.30 44.75 2.90
442 474 5.866159 ACTATTCATCTGAGCTCACATGA 57.134 39.130 25.41 25.41 31.04 3.07
443 475 8.429493 TTTTACTATTCATCTGAGCTCACATG 57.571 34.615 22.05 22.05 0.00 3.21
475 510 9.734620 CACAATATGTTTTTCAGACTTTTCAGA 57.265 29.630 0.00 0.00 0.00 3.27
476 511 8.482429 GCACAATATGTTTTTCAGACTTTTCAG 58.518 33.333 0.00 0.00 0.00 3.02
478 513 7.437862 TGGCACAATATGTTTTTCAGACTTTTC 59.562 33.333 0.00 0.00 31.92 2.29
480 515 6.815089 TGGCACAATATGTTTTTCAGACTTT 58.185 32.000 0.00 0.00 31.92 2.66
489 532 7.281774 TTGTCAATGTTTGGCACAATATGTTTT 59.718 29.630 0.00 0.00 46.32 2.43
495 538 6.782298 CATTTGTCAATGTTTGGCACAATA 57.218 33.333 0.00 0.00 46.32 1.90
513 556 5.358922 AGTGGTGGTCAATCAAAACATTTG 58.641 37.500 0.00 0.00 0.00 2.32
517 560 5.042463 TCTAGTGGTGGTCAATCAAAACA 57.958 39.130 0.00 0.00 0.00 2.83
518 561 5.705441 TCATCTAGTGGTGGTCAATCAAAAC 59.295 40.000 0.00 0.00 0.00 2.43
519 562 5.705441 GTCATCTAGTGGTGGTCAATCAAAA 59.295 40.000 0.00 0.00 0.00 2.44
521 564 4.285775 TGTCATCTAGTGGTGGTCAATCAA 59.714 41.667 0.00 0.00 0.00 2.57
523 566 4.471904 TGTCATCTAGTGGTGGTCAATC 57.528 45.455 0.00 0.00 0.00 2.67
528 571 2.832129 ACGAATGTCATCTAGTGGTGGT 59.168 45.455 0.00 0.00 0.00 4.16
529 572 3.190079 CACGAATGTCATCTAGTGGTGG 58.810 50.000 0.00 0.00 0.00 4.61
536 588 5.353956 CCATGTTTTCCACGAATGTCATCTA 59.646 40.000 0.00 0.00 0.00 1.98
537 589 4.156556 CCATGTTTTCCACGAATGTCATCT 59.843 41.667 0.00 0.00 0.00 2.90
557 609 5.589452 TGAAGCATTGTTTTTCTTTTGCCAT 59.411 32.000 0.00 0.00 0.00 4.40
608 660 2.890311 TCGTGGAAGATGTGGCAATTTT 59.110 40.909 0.00 0.00 0.00 1.82
609 661 2.513753 TCGTGGAAGATGTGGCAATTT 58.486 42.857 0.00 0.00 0.00 1.82
610 662 2.198827 TCGTGGAAGATGTGGCAATT 57.801 45.000 0.00 0.00 0.00 2.32
611 663 2.198827 TTCGTGGAAGATGTGGCAAT 57.801 45.000 0.00 0.00 0.00 3.56
615 667 3.251479 TGAGATTCGTGGAAGATGTGG 57.749 47.619 0.00 0.00 0.00 4.17
639 691 5.779529 ATTGTGTGAAAAGCTTCATCACT 57.220 34.783 30.05 16.92 43.39 3.41
640 692 7.928908 TTAATTGTGTGAAAAGCTTCATCAC 57.071 32.000 26.58 26.58 43.39 3.06
672 724 5.587289 TGAGTTTTTGTGCCAAATACTGAC 58.413 37.500 20.06 11.97 0.00 3.51
676 728 8.987890 ACAAATATGAGTTTTTGTGCCAAATAC 58.012 29.630 10.84 10.84 42.72 1.89
678 730 9.553064 TTACAAATATGAGTTTTTGTGCCAAAT 57.447 25.926 10.40 0.00 43.76 2.32
725 782 3.441222 TCCGAGCTCACGTCAGTAAAATA 59.559 43.478 15.40 0.00 0.00 1.40
734 791 0.452184 TCTCATTCCGAGCTCACGTC 59.548 55.000 15.40 0.00 41.98 4.34
735 792 0.888619 TTCTCATTCCGAGCTCACGT 59.111 50.000 15.40 0.00 41.98 4.49
736 793 1.272781 GTTCTCATTCCGAGCTCACG 58.727 55.000 15.40 2.70 41.98 4.35
737 794 2.266554 CTGTTCTCATTCCGAGCTCAC 58.733 52.381 15.40 1.13 41.98 3.51
739 796 1.285578 GCTGTTCTCATTCCGAGCTC 58.714 55.000 2.73 2.73 41.98 4.09
742 836 2.376808 AGTGCTGTTCTCATTCCGAG 57.623 50.000 0.00 0.00 43.80 4.63
744 838 2.159787 CGAAAGTGCTGTTCTCATTCCG 60.160 50.000 0.00 0.00 0.00 4.30
747 841 1.537202 GGCGAAAGTGCTGTTCTCATT 59.463 47.619 0.00 0.00 34.52 2.57
769 863 2.087248 CCTCCCCATGGAAAGTGGT 58.913 57.895 15.22 0.00 41.17 4.16
772 866 1.856873 TGGCCTCCCCATGGAAAGT 60.857 57.895 15.22 0.00 41.17 2.66
773 867 3.099171 TGGCCTCCCCATGGAAAG 58.901 61.111 15.22 9.86 41.17 2.62
781 875 2.440980 GCAGAACATGGCCTCCCC 60.441 66.667 3.32 0.00 0.00 4.81
782 876 0.685458 AATGCAGAACATGGCCTCCC 60.685 55.000 3.32 0.00 39.60 4.30
783 877 1.135721 GAAATGCAGAACATGGCCTCC 59.864 52.381 3.32 0.00 39.60 4.30
784 878 1.820519 TGAAATGCAGAACATGGCCTC 59.179 47.619 3.32 0.00 39.60 4.70
785 879 1.547372 GTGAAATGCAGAACATGGCCT 59.453 47.619 3.32 0.00 39.60 5.19
786 880 1.547372 AGTGAAATGCAGAACATGGCC 59.453 47.619 0.00 0.00 39.60 5.36
787 881 2.602878 CAGTGAAATGCAGAACATGGC 58.397 47.619 0.00 0.00 39.60 4.40
788 882 2.673043 GCCAGTGAAATGCAGAACATGG 60.673 50.000 0.00 0.00 39.60 3.66
822 916 2.642139 TTGGTGTTCGACGAGTATCC 57.358 50.000 0.00 0.93 0.00 2.59
833 927 1.404035 GTGTGGTGGACTTTGGTGTTC 59.596 52.381 0.00 0.00 0.00 3.18
836 930 1.106944 GGGTGTGGTGGACTTTGGTG 61.107 60.000 0.00 0.00 0.00 4.17
838 932 1.530655 GGGGTGTGGTGGACTTTGG 60.531 63.158 0.00 0.00 0.00 3.28
840 934 2.009882 TGGGGGTGTGGTGGACTTT 61.010 57.895 0.00 0.00 0.00 2.66
851 945 4.217210 TTGTGGCCTGTGGGGGTG 62.217 66.667 3.32 0.00 35.12 4.61
852 946 3.902112 CTTGTGGCCTGTGGGGGT 61.902 66.667 3.32 0.00 35.12 4.95
1155 1255 1.066143 ACCTTCTTGTACGCCTCCATG 60.066 52.381 0.00 0.00 0.00 3.66
1173 1273 1.374758 CCAGTCGAACTCCTGCACC 60.375 63.158 0.00 0.00 0.00 5.01
1215 1315 2.436646 AAGAGGATGTTGGCGGCG 60.437 61.111 0.51 0.51 0.00 6.46
1275 1380 1.953559 ATGTGCTATGGTTACTGCCG 58.046 50.000 0.00 0.00 0.00 5.69
1290 1395 8.651389 TCATCTCCCCTAGAAATTAGTTATGTG 58.349 37.037 0.00 0.00 37.89 3.21
1291 1396 8.798975 TCATCTCCCCTAGAAATTAGTTATGT 57.201 34.615 0.00 0.00 37.89 2.29
1294 1399 9.447279 TCATTCATCTCCCCTAGAAATTAGTTA 57.553 33.333 0.00 0.00 37.89 2.24
1295 1400 8.337118 TCATTCATCTCCCCTAGAAATTAGTT 57.663 34.615 0.00 0.00 37.89 2.24
1312 1417 1.154205 CGTGTCCCGGCTCATTCATC 61.154 60.000 0.00 0.00 0.00 2.92
1317 1422 3.329542 AATGCGTGTCCCGGCTCAT 62.330 57.895 0.00 0.00 36.94 2.90
1318 1423 4.015406 AATGCGTGTCCCGGCTCA 62.015 61.111 0.00 0.00 36.94 4.26
1319 1424 3.499737 CAATGCGTGTCCCGGCTC 61.500 66.667 0.00 0.00 36.94 4.70
1320 1425 3.842925 AACAATGCGTGTCCCGGCT 62.843 57.895 0.00 0.00 40.60 5.52
1322 1427 2.867472 GAACAATGCGTGTCCCGG 59.133 61.111 0.00 0.00 40.60 5.73
1323 1428 2.474266 CGAACAATGCGTGTCCCG 59.526 61.111 0.00 0.00 40.60 5.14
1324 1429 2.686816 CCCGAACAATGCGTGTCCC 61.687 63.158 0.00 0.00 40.60 4.46
1325 1430 2.686816 CCCCGAACAATGCGTGTCC 61.687 63.158 0.00 0.00 40.60 4.02
1327 1432 0.820074 TTTCCCCGAACAATGCGTGT 60.820 50.000 0.00 0.00 44.64 4.49
1328 1433 0.109781 CTTTCCCCGAACAATGCGTG 60.110 55.000 0.00 0.00 0.00 5.34
1329 1434 1.862602 GCTTTCCCCGAACAATGCGT 61.863 55.000 0.00 0.00 0.00 5.24
1330 1435 1.154035 GCTTTCCCCGAACAATGCG 60.154 57.895 0.00 0.00 0.00 4.73
1331 1436 0.109132 CAGCTTTCCCCGAACAATGC 60.109 55.000 0.00 0.00 0.00 3.56
1332 1437 1.470098 CTCAGCTTTCCCCGAACAATG 59.530 52.381 0.00 0.00 0.00 2.82
1341 1446 1.587547 CTATTCGCCTCAGCTTTCCC 58.412 55.000 0.00 0.00 36.60 3.97
1345 1450 0.249238 CGAGCTATTCGCCTCAGCTT 60.249 55.000 0.00 0.00 45.42 3.74
1366 1471 5.614324 TCAGATATCAACCCTGAAACGAT 57.386 39.130 5.32 0.00 34.38 3.73
1372 1477 5.211201 TCAGACATCAGATATCAACCCTGA 58.789 41.667 5.32 6.91 40.68 3.86
1375 1480 7.605691 CCTAAATCAGACATCAGATATCAACCC 59.394 40.741 5.32 0.00 0.00 4.11
1382 1487 9.152327 ACAGATTCCTAAATCAGACATCAGATA 57.848 33.333 1.41 0.00 43.21 1.98
1384 1489 7.124750 TGACAGATTCCTAAATCAGACATCAGA 59.875 37.037 1.41 0.00 43.21 3.27
1399 1599 4.256920 CCGAACTCAAATGACAGATTCCT 58.743 43.478 0.00 0.00 0.00 3.36
1400 1600 3.181506 GCCGAACTCAAATGACAGATTCC 60.182 47.826 0.00 0.00 0.00 3.01
1459 1663 9.661563 ACAAAATAGAACAAAATGCATCATGAT 57.338 25.926 16.15 1.18 0.00 2.45
1492 1696 4.137543 CCTGGCAGAAGGGTATGATTTAC 58.862 47.826 17.94 0.00 33.28 2.01
1546 1750 6.623767 GCTTGAATTCAGCGAAGTAGGATTTT 60.624 38.462 8.41 0.00 0.00 1.82
1547 1751 5.163713 GCTTGAATTCAGCGAAGTAGGATTT 60.164 40.000 8.41 0.00 0.00 2.17
1566 1770 2.915604 AGAAAATCCTCTCAGGGCTTGA 59.084 45.455 0.00 0.00 35.59 3.02
1689 1899 9.559732 CCATGACCTTATTATTAGAACACATGA 57.440 33.333 0.00 0.00 34.26 3.07
1757 1967 5.303845 ACCTCCCGTACTAATATTGACCTTC 59.696 44.000 0.00 0.00 0.00 3.46
1761 1971 5.779529 TGACCTCCCGTACTAATATTGAC 57.220 43.478 0.00 0.00 0.00 3.18
1790 2000 4.080356 CACCATGGGAAGAACTGGAGATAA 60.080 45.833 18.09 0.00 32.92 1.75
1875 2086 4.634199 ACCAGCATTCCAAGAAAATGTTG 58.366 39.130 5.91 5.91 41.93 3.33
1914 2125 6.279882 CCGCCATTTGGAATATGTTTGTAAT 58.720 36.000 0.00 0.00 37.39 1.89
1930 2141 1.560505 ATCAGAAAAGGCCGCCATTT 58.439 45.000 12.34 12.34 0.00 2.32
1954 2165 7.327032 GTCAAGCCTGAAATACAAAAGAATGAC 59.673 37.037 0.00 0.00 31.88 3.06
1956 2167 7.373493 AGTCAAGCCTGAAATACAAAAGAATG 58.627 34.615 0.00 0.00 31.88 2.67
2020 2231 8.698973 TGGAGTTTATCATGAAACAAACCTAA 57.301 30.769 19.35 3.20 41.00 2.69
2061 2272 8.106462 TCACATTTGACATCCCAAAGATTACTA 58.894 33.333 0.00 0.00 39.13 1.82
2062 2273 6.947733 TCACATTTGACATCCCAAAGATTACT 59.052 34.615 0.00 0.00 39.13 2.24
2063 2274 7.156876 TCACATTTGACATCCCAAAGATTAC 57.843 36.000 0.00 0.00 39.13 1.89
2172 2383 4.020218 TCCATCCTTTTGATCTCACTTCGT 60.020 41.667 0.00 0.00 0.00 3.85
2264 2475 2.746269 CCCACTGTTGCACAAGATTTG 58.254 47.619 1.88 0.00 0.00 2.32
2265 2476 1.069049 GCCCACTGTTGCACAAGATTT 59.931 47.619 1.88 0.00 0.00 2.17
2274 2485 4.499696 GGTCATAATTATGCCCACTGTTGC 60.500 45.833 18.49 0.00 32.23 4.17
2383 2596 6.260050 TGTCATACAAGTCAAACTCTTTCACC 59.740 38.462 0.00 0.00 0.00 4.02
2409 2622 7.912719 ACTAAGAGTTCTTGGCTTAAGAGAAT 58.087 34.615 6.67 0.00 45.66 2.40
2411 2624 6.493802 TGACTAAGAGTTCTTGGCTTAAGAGA 59.506 38.462 6.67 0.00 45.66 3.10
2425 2639 6.054295 GGCTGAATGATCATGACTAAGAGTT 58.946 40.000 9.46 0.00 34.37 3.01
2449 2663 1.026718 CCCAAGGGCGCAGTTAGAAG 61.027 60.000 10.83 0.00 0.00 2.85
2456 2670 1.303317 ACTTAACCCAAGGGCGCAG 60.303 57.895 10.83 0.80 38.70 5.18
2468 2682 1.200020 GACAGCATGGCCACACTTAAC 59.800 52.381 8.16 0.00 39.24 2.01
2469 2683 1.533625 GACAGCATGGCCACACTTAA 58.466 50.000 8.16 0.00 39.24 1.85
2470 2684 3.248043 GACAGCATGGCCACACTTA 57.752 52.632 8.16 0.00 39.24 2.24
2471 2685 4.085876 GACAGCATGGCCACACTT 57.914 55.556 8.16 0.00 39.24 3.16
2479 2693 4.389687 GCTTTAACCAATTTGACAGCATGG 59.610 41.667 0.00 0.00 43.62 3.66
2480 2694 4.389687 GGCTTTAACCAATTTGACAGCATG 59.610 41.667 0.00 0.00 46.00 4.06
2481 2695 4.563374 GGGCTTTAACCAATTTGACAGCAT 60.563 41.667 0.00 0.00 0.00 3.79
2482 2696 3.244044 GGGCTTTAACCAATTTGACAGCA 60.244 43.478 0.00 0.00 0.00 4.41
2483 2697 3.006859 AGGGCTTTAACCAATTTGACAGC 59.993 43.478 0.00 0.00 0.00 4.40
2484 2698 4.039124 ACAGGGCTTTAACCAATTTGACAG 59.961 41.667 0.00 0.00 0.00 3.51
2485 2699 3.964031 ACAGGGCTTTAACCAATTTGACA 59.036 39.130 0.00 0.00 0.00 3.58
2486 2700 4.038642 TCACAGGGCTTTAACCAATTTGAC 59.961 41.667 0.00 0.00 0.00 3.18
2487 2701 4.219115 TCACAGGGCTTTAACCAATTTGA 58.781 39.130 0.00 0.00 0.00 2.69
2488 2702 4.599047 TCACAGGGCTTTAACCAATTTG 57.401 40.909 0.00 0.00 0.00 2.32
2489 2703 4.837860 TCATCACAGGGCTTTAACCAATTT 59.162 37.500 0.00 0.00 0.00 1.82
2490 2704 4.415596 TCATCACAGGGCTTTAACCAATT 58.584 39.130 0.00 0.00 0.00 2.32
2491 2705 4.046286 TCATCACAGGGCTTTAACCAAT 57.954 40.909 0.00 0.00 0.00 3.16
2492 2706 3.517296 TCATCACAGGGCTTTAACCAA 57.483 42.857 0.00 0.00 0.00 3.67
2493 2707 3.181434 ACTTCATCACAGGGCTTTAACCA 60.181 43.478 0.00 0.00 0.00 3.67
2494 2708 3.421844 ACTTCATCACAGGGCTTTAACC 58.578 45.455 0.00 0.00 0.00 2.85
2495 2709 5.453567 AAACTTCATCACAGGGCTTTAAC 57.546 39.130 0.00 0.00 0.00 2.01
2503 2717 6.817765 TTTAGGCTAAAACTTCATCACAGG 57.182 37.500 17.00 0.00 0.00 4.00
2511 2725 5.043189 ACGTGCATTTAGGCTAAAACTTC 57.957 39.130 22.42 12.71 34.04 3.01
2520 2734 2.680841 TCCATTGTACGTGCATTTAGGC 59.319 45.455 7.30 0.00 0.00 3.93
2552 2766 7.995289 ACACATGAACTAACAATTTGAACTGA 58.005 30.769 0.00 0.00 0.00 3.41
2558 2772 6.977502 TCCACAACACATGAACTAACAATTTG 59.022 34.615 0.00 0.00 0.00 2.32
2577 2791 5.667539 TTGATGGTTTGAAAAGTCCACAA 57.332 34.783 0.00 0.00 35.26 3.33
2598 2812 6.098838 TGGCAGAGAGTGATCACTATAACATT 59.901 38.462 27.95 3.85 42.66 2.71
2640 2854 0.698238 AAGCCTACATGTGCCTTGGA 59.302 50.000 9.11 0.00 0.00 3.53
2643 2857 2.941415 GCTACAAGCCTACATGTGCCTT 60.941 50.000 9.11 5.19 34.48 4.35
2656 2870 6.205784 TGTAACTGAAAAATGTGCTACAAGC 58.794 36.000 0.00 0.00 42.82 4.01
2657 2871 8.801715 AATGTAACTGAAAAATGTGCTACAAG 57.198 30.769 0.00 0.00 0.00 3.16
2658 2872 9.593134 AAAATGTAACTGAAAAATGTGCTACAA 57.407 25.926 0.00 0.00 0.00 2.41
2721 2950 6.791887 TGCTTCACAATGTAGAAAGAGAAG 57.208 37.500 6.54 5.20 35.55 2.85
2743 2972 3.799281 AACAAGGTTGGTGTGTTCATG 57.201 42.857 0.00 0.00 29.57 3.07
2769 2998 8.989980 GTAGTAGAGTGCAATTCTTTTTAGTGT 58.010 33.333 7.24 0.00 33.66 3.55
2779 3008 9.134734 GATAGCATTAGTAGTAGAGTGCAATTC 57.865 37.037 11.73 0.00 35.17 2.17
2837 3067 4.325119 TGTAGCATAACGTTTTTAGCCCA 58.675 39.130 5.91 3.40 0.00 5.36
2848 3078 7.445040 CGGATATGTAAACATGTAGCATAACG 58.555 38.462 15.90 17.23 37.15 3.18
2872 3102 1.931172 ACCGGAATCTACGAAATTGCG 59.069 47.619 9.46 3.68 44.43 4.85
2904 3137 7.620880 ACTGCTCACCAATCACTTAATACTTA 58.379 34.615 0.00 0.00 0.00 2.24
2946 3179 2.557924 CAGCCAGATTTGCTACCAACAA 59.442 45.455 0.00 0.00 36.81 2.83
2972 3205 3.585862 GTCTGTTTGCCTTGAGATCGTA 58.414 45.455 0.00 0.00 0.00 3.43
2974 3207 1.734465 GGTCTGTTTGCCTTGAGATCG 59.266 52.381 0.00 0.00 0.00 3.69
2975 3208 2.783135 TGGTCTGTTTGCCTTGAGATC 58.217 47.619 0.00 0.00 0.00 2.75
2983 3216 1.315257 ATGGCGATGGTCTGTTTGCC 61.315 55.000 0.00 0.00 41.96 4.52
3070 3303 8.997323 ACAGAAACTATGACATTCTTGAGAAAG 58.003 33.333 0.00 0.00 37.61 2.62
3076 3309 8.315391 TCAGAACAGAAACTATGACATTCTTG 57.685 34.615 0.00 0.00 31.26 3.02
3120 3353 8.609176 TCAGATTAACAACTGTTTGTACAACTC 58.391 33.333 8.07 5.46 45.69 3.01
3138 3371 4.854399 CAAACGTGCAACCTTCAGATTAA 58.146 39.130 0.00 0.00 0.00 1.40
3153 3386 2.791383 TGGAATTTGGAGCAAACGTG 57.209 45.000 0.00 0.00 36.13 4.49
3183 3416 8.890718 GGTTCCACATAAAAGTATAGTTTCCTC 58.109 37.037 6.01 0.00 0.00 3.71
3208 3441 4.024048 AGTTTTACTTGAACACTGCGATGG 60.024 41.667 0.00 0.00 0.00 3.51
3210 3443 6.854496 TTAGTTTTACTTGAACACTGCGAT 57.146 33.333 0.00 0.00 0.00 4.58
3211 3444 6.665474 TTTAGTTTTACTTGAACACTGCGA 57.335 33.333 0.00 0.00 0.00 5.10
3212 3445 7.908193 ATTTTAGTTTTACTTGAACACTGCG 57.092 32.000 0.00 0.00 0.00 5.18
3213 3446 9.900264 CAAATTTTAGTTTTACTTGAACACTGC 57.100 29.630 0.00 0.00 0.00 4.40
3215 3448 9.646427 TGCAAATTTTAGTTTTACTTGAACACT 57.354 25.926 0.00 0.00 0.00 3.55
3238 3471 3.008923 TGTGGAATGTCTGGAGTTATGCA 59.991 43.478 0.00 0.00 0.00 3.96
3408 3641 1.891150 TCCACCTTAACAGAGTCGACC 59.109 52.381 13.01 3.77 0.00 4.79
3410 3643 2.094182 GCATCCACCTTAACAGAGTCGA 60.094 50.000 0.00 0.00 0.00 4.20
3425 3658 0.811219 CAGCTTCGAATCGGCATCCA 60.811 55.000 10.11 0.00 0.00 3.41
3450 3683 7.453752 TCCAGTGTATCTAACCTGACTAAAACT 59.546 37.037 0.00 0.00 31.61 2.66
3472 3705 1.263356 TCCTTAACGACACCCTCCAG 58.737 55.000 0.00 0.00 0.00 3.86
3474 3707 2.845363 TTTCCTTAACGACACCCTCC 57.155 50.000 0.00 0.00 0.00 4.30
3501 3734 3.569701 GGGCAGAACTTCTCATTTTGTCA 59.430 43.478 0.00 0.00 0.00 3.58
3517 3750 2.038863 TCCTCTTTGGTAAGGGCAGA 57.961 50.000 0.00 0.00 37.07 4.26
3583 3816 6.017400 ACTATCACTTGCATCACTTTTTGG 57.983 37.500 0.00 0.00 0.00 3.28
3591 3824 3.900966 AGCTGACTATCACTTGCATCA 57.099 42.857 0.00 0.00 0.00 3.07
3596 3829 3.181496 TGACGCTAGCTGACTATCACTTG 60.181 47.826 13.93 0.00 0.00 3.16
3753 3986 5.069318 TGATGGCTACAACACATTTCAGAA 58.931 37.500 0.00 0.00 0.00 3.02
3755 3988 4.456911 ACTGATGGCTACAACACATTTCAG 59.543 41.667 0.00 0.00 32.67 3.02
3874 4107 6.166279 CCATGACTTCTAAGTGCTAACTGAA 58.834 40.000 0.00 0.00 39.88 3.02
3955 4188 6.997239 TTTACTCTATAGTTGACAGAGCGA 57.003 37.500 0.00 0.00 39.56 4.93
4073 4306 4.382901 GCCAACCAGAAAAATGGATATGCA 60.383 41.667 0.00 0.00 43.57 3.96
4132 4365 0.464735 TGGAACCACAAGACGGTTGG 60.465 55.000 0.00 0.00 46.80 3.77
4137 4370 2.140717 GTAACCTGGAACCACAAGACG 58.859 52.381 0.00 0.00 0.00 4.18
4176 4409 9.672086 GACAGTAATACATCAGATCTTACACTC 57.328 37.037 0.00 0.00 0.00 3.51
4178 4411 9.457110 CAGACAGTAATACATCAGATCTTACAC 57.543 37.037 0.00 0.00 0.00 2.90
4191 4449 5.565242 CGTTACCACCACAGACAGTAATACA 60.565 44.000 0.00 0.00 0.00 2.29
4192 4450 4.860907 CGTTACCACCACAGACAGTAATAC 59.139 45.833 0.00 0.00 0.00 1.89
4193 4451 4.618927 GCGTTACCACCACAGACAGTAATA 60.619 45.833 0.00 0.00 0.00 0.98
4194 4452 3.863400 GCGTTACCACCACAGACAGTAAT 60.863 47.826 0.00 0.00 0.00 1.89
4198 4474 0.249699 TGCGTTACCACCACAGACAG 60.250 55.000 0.00 0.00 0.00 3.51
4204 4480 1.465777 GGTACATTGCGTTACCACCAC 59.534 52.381 0.00 0.00 33.04 4.16
4243 4520 9.151471 ACACGAGCCAATATATATGTATTTCAC 57.849 33.333 2.20 0.00 0.00 3.18
4293 4572 2.311463 TCGGAAGGGCAAAAATGACAA 58.689 42.857 0.00 0.00 0.00 3.18
4303 4582 2.028476 CGATATGGTAATCGGAAGGGCA 60.028 50.000 0.00 0.00 43.92 5.36
4304 4583 2.618053 CGATATGGTAATCGGAAGGGC 58.382 52.381 0.00 0.00 43.92 5.19
4345 4625 5.818678 TGGCCTCCTACGAAAACATATAT 57.181 39.130 3.32 0.00 0.00 0.86
4355 4635 1.568504 AACTCATTGGCCTCCTACGA 58.431 50.000 3.32 0.00 0.00 3.43
4356 4636 2.403252 AAACTCATTGGCCTCCTACG 57.597 50.000 3.32 0.00 0.00 3.51
4369 4649 7.060421 ACACTCCTTCCTCAAAATTAAACTCA 58.940 34.615 0.00 0.00 0.00 3.41
4479 4761 3.371487 CCTTTGTGGCATATACCTCACCA 60.371 47.826 0.00 0.00 33.12 4.17
4480 4762 3.214328 CCTTTGTGGCATATACCTCACC 58.786 50.000 0.00 0.00 33.12 4.02
4481 4763 3.886123 ACCTTTGTGGCATATACCTCAC 58.114 45.455 0.00 0.00 40.22 3.51
4496 4778 4.081697 AGGTTTTCAGTGGAACAACCTTTG 60.082 41.667 2.06 0.00 43.77 2.77
4498 4780 3.699538 GAGGTTTTCAGTGGAACAACCTT 59.300 43.478 8.66 0.00 44.83 3.50
4500 4782 3.288092 AGAGGTTTTCAGTGGAACAACC 58.712 45.455 10.91 5.10 44.16 3.77
4504 4786 5.576447 TTGAAAGAGGTTTTCAGTGGAAC 57.424 39.130 3.00 0.00 39.30 3.62
4506 4788 7.723616 TCATATTTGAAAGAGGTTTTCAGTGGA 59.276 33.333 3.00 0.00 39.30 4.02
4594 4876 6.963805 GTCTCTTCGAATTTTGAGGCTAATTG 59.036 38.462 8.93 0.00 0.00 2.32
4612 4894 8.964476 TCCATCAAAATATACAAGGTCTCTTC 57.036 34.615 0.00 0.00 0.00 2.87
4657 4939 3.317993 ACCTTTTCCACGTTGAATTCCAG 59.682 43.478 2.55 0.00 0.00 3.86
4659 4941 3.067601 ACACCTTTTCCACGTTGAATTCC 59.932 43.478 2.55 0.00 0.00 3.01
4660 4942 4.301637 ACACCTTTTCCACGTTGAATTC 57.698 40.909 2.55 0.00 0.00 2.17
4663 4945 4.452825 TGATACACCTTTTCCACGTTGAA 58.547 39.130 0.00 0.00 0.00 2.69
4665 4947 4.435518 CGATGATACACCTTTTCCACGTTG 60.436 45.833 0.00 0.00 0.00 4.10
4666 4948 3.682858 CGATGATACACCTTTTCCACGTT 59.317 43.478 0.00 0.00 0.00 3.99
4668 4950 2.030457 GCGATGATACACCTTTTCCACG 59.970 50.000 0.00 0.00 0.00 4.94
4669 4951 3.270877 AGCGATGATACACCTTTTCCAC 58.729 45.455 0.00 0.00 0.00 4.02
4670 4952 3.627395 AGCGATGATACACCTTTTCCA 57.373 42.857 0.00 0.00 0.00 3.53
4674 4961 7.990886 TCCTTTTATTAGCGATGATACACCTTT 59.009 33.333 0.00 0.00 0.00 3.11
4685 4972 9.337396 TGTCAATTGTATCCTTTTATTAGCGAT 57.663 29.630 5.13 0.00 0.00 4.58
4688 4975 9.722056 CACTGTCAATTGTATCCTTTTATTAGC 57.278 33.333 5.13 0.00 0.00 3.09
4695 4982 5.630121 TCCACACTGTCAATTGTATCCTTT 58.370 37.500 5.13 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.