Multiple sequence alignment - TraesCS1B01G391400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G391400 chr1B 100.000 8338 0 0 1 8338 624723767 624732104 0.000000e+00 15398.0
1 TraesCS1B01G391400 chr1B 79.738 686 91 29 4802 5461 135258540 135259203 3.550000e-123 453.0
2 TraesCS1B01G391400 chr1B 80.069 291 48 9 4471 4754 646919457 646919744 3.050000e-49 207.0
3 TraesCS1B01G391400 chr1D 89.349 1906 88 47 2 1849 454221553 454223401 0.000000e+00 2289.0
4 TraesCS1B01G391400 chr1D 89.749 1512 115 16 1846 3335 454223505 454224998 0.000000e+00 1897.0
5 TraesCS1B01G391400 chr1D 90.704 1463 74 24 5979 7433 454227124 454228532 0.000000e+00 1892.0
6 TraesCS1B01G391400 chr1D 94.399 982 39 11 3340 4310 454225393 454226369 0.000000e+00 1495.0
7 TraesCS1B01G391400 chr1D 95.490 510 23 0 5454 5963 454226631 454227140 0.000000e+00 815.0
8 TraesCS1B01G391400 chr1D 87.805 369 21 11 5106 5456 418768937 418769299 2.170000e-110 411.0
9 TraesCS1B01G391400 chr1D 81.443 291 43 8 4471 4754 468251294 468251580 2.340000e-55 228.0
10 TraesCS1B01G391400 chr1D 86.486 185 8 4 4305 4472 454226447 454226631 3.970000e-43 187.0
11 TraesCS1B01G391400 chr1D 83.125 160 25 2 282 441 11449637 11449480 2.430000e-30 145.0
12 TraesCS1B01G391400 chr1D 91.954 87 7 0 4469 4555 418767964 418768050 1.140000e-23 122.0
13 TraesCS1B01G391400 chr1D 95.775 71 3 0 7493 7563 454228672 454228742 1.900000e-21 115.0
14 TraesCS1B01G391400 chr1A 92.703 1343 74 16 6098 7433 548562657 548563982 0.000000e+00 1916.0
15 TraesCS1B01G391400 chr1A 87.402 1524 92 37 1860 3335 548559009 548560480 0.000000e+00 1659.0
16 TraesCS1B01G391400 chr1A 91.286 1159 51 14 3340 4472 548560937 548562071 0.000000e+00 1535.0
17 TraesCS1B01G391400 chr1A 89.659 909 55 16 958 1846 548558025 548558914 0.000000e+00 1122.0
18 TraesCS1B01G391400 chr1A 89.421 898 62 16 4581 5460 512662077 512661195 0.000000e+00 1101.0
19 TraesCS1B01G391400 chr1A 93.592 515 28 1 5454 5963 548562071 548562585 0.000000e+00 763.0
20 TraesCS1B01G391400 chr1A 88.491 530 48 11 7730 8248 548564473 548565000 5.490000e-176 628.0
21 TraesCS1B01G391400 chr1A 94.681 94 4 1 5979 6072 548562569 548562661 2.430000e-30 145.0
22 TraesCS1B01G391400 chr1A 82.803 157 24 3 285 441 13311594 13311441 4.060000e-28 137.0
23 TraesCS1B01G391400 chr1A 94.118 85 4 1 4468 4552 512662242 512662159 2.440000e-25 128.0
24 TraesCS1B01G391400 chr1A 88.462 104 10 2 852 954 548557867 548557969 3.160000e-24 124.0
25 TraesCS1B01G391400 chr1A 93.151 73 2 2 7493 7563 548564117 548564188 4.120000e-18 104.0
26 TraesCS1B01G391400 chr6B 98.836 859 6 1 4598 5456 134813329 134814183 0.000000e+00 1528.0
27 TraesCS1B01G391400 chr6B 100.000 87 0 0 4469 4555 134813013 134813099 2.410000e-35 161.0
28 TraesCS1B01G391400 chr5A 92.937 892 51 9 4570 5455 487326740 487327625 0.000000e+00 1288.0
29 TraesCS1B01G391400 chr5A 89.821 894 56 15 4581 5454 569461893 569462771 0.000000e+00 1114.0
30 TraesCS1B01G391400 chr5A 90.929 463 30 9 4602 5059 46282307 46281852 5.530000e-171 612.0
31 TraesCS1B01G391400 chr5A 77.892 683 97 35 4801 5459 644027834 644028486 7.900000e-100 375.0
32 TraesCS1B01G391400 chr5A 95.906 171 6 1 5291 5461 46279597 46279428 8.240000e-70 276.0
33 TraesCS1B01G391400 chr5A 95.349 86 4 0 4470 4555 46282626 46282541 4.060000e-28 137.0
34 TraesCS1B01G391400 chr5A 95.122 82 4 0 4471 4552 569461730 569461811 6.790000e-26 130.0
35 TraesCS1B01G391400 chr5A 94.048 84 5 0 4472 4555 487326672 487326755 2.440000e-25 128.0
36 TraesCS1B01G391400 chr7B 89.910 892 68 10 4570 5456 548074700 548075574 0.000000e+00 1129.0
37 TraesCS1B01G391400 chr2A 92.757 497 25 8 4570 5062 109327908 109327419 0.000000e+00 708.0
38 TraesCS1B01G391400 chr2A 88.636 572 44 12 4570 5128 32263482 32262919 0.000000e+00 676.0
39 TraesCS1B01G391400 chr2A 83.871 155 24 1 286 440 350732482 350732329 6.740000e-31 147.0
40 TraesCS1B01G391400 chr2A 82.609 161 22 6 283 441 527378886 527378730 4.060000e-28 137.0
41 TraesCS1B01G391400 chr7A 89.107 459 35 8 4925 5378 90330231 90329783 2.630000e-154 556.0
42 TraesCS1B01G391400 chr7A 84.301 465 35 21 4471 4929 90331156 90330724 3.600000e-113 420.0
43 TraesCS1B01G391400 chr6A 87.474 487 37 11 4570 5046 26678436 26677964 2.650000e-149 540.0
44 TraesCS1B01G391400 chr3D 85.093 161 22 2 281 441 605070380 605070538 6.700000e-36 163.0
45 TraesCS1B01G391400 chr2D 85.000 160 23 1 282 441 213696937 213696779 2.410000e-35 161.0
46 TraesCS1B01G391400 chr2D 84.932 146 21 1 286 431 271511773 271511917 6.740000e-31 147.0
47 TraesCS1B01G391400 chr2B 86.000 150 20 1 282 431 265422038 265421890 8.660000e-35 159.0
48 TraesCS1B01G391400 chr4D 85.227 88 12 1 3590 3676 437687372 437687285 1.150000e-13 89.8
49 TraesCS1B01G391400 chr4B 84.524 84 13 0 3593 3676 540320934 540320851 5.360000e-12 84.2
50 TraesCS1B01G391400 chr4A 84.524 84 13 0 3593 3676 30397134 30397217 5.360000e-12 84.2
51 TraesCS1B01G391400 chr7D 89.286 56 5 1 696 751 559075620 559075674 1.500000e-07 69.4
52 TraesCS1B01G391400 chr6D 77.670 103 18 5 2284 2382 449993427 449993326 3.250000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G391400 chr1B 624723767 624732104 8337 False 15398.000000 15398 100.000000 1 8338 1 chr1B.!!$F2 8337
1 TraesCS1B01G391400 chr1B 135258540 135259203 663 False 453.000000 453 79.738000 4802 5461 1 chr1B.!!$F1 659
2 TraesCS1B01G391400 chr1D 454221553 454228742 7189 False 1241.428571 2289 91.707429 2 7563 7 chr1D.!!$F3 7561
3 TraesCS1B01G391400 chr1D 418767964 418769299 1335 False 266.500000 411 89.879500 4469 5456 2 chr1D.!!$F2 987
4 TraesCS1B01G391400 chr1A 548557867 548565000 7133 False 888.444444 1916 91.047444 852 8248 9 chr1A.!!$F1 7396
5 TraesCS1B01G391400 chr1A 512661195 512662242 1047 True 614.500000 1101 91.769500 4468 5460 2 chr1A.!!$R2 992
6 TraesCS1B01G391400 chr6B 134813013 134814183 1170 False 844.500000 1528 99.418000 4469 5456 2 chr6B.!!$F1 987
7 TraesCS1B01G391400 chr5A 487326672 487327625 953 False 708.000000 1288 93.492500 4472 5455 2 chr5A.!!$F2 983
8 TraesCS1B01G391400 chr5A 569461730 569462771 1041 False 622.000000 1114 92.471500 4471 5454 2 chr5A.!!$F3 983
9 TraesCS1B01G391400 chr5A 644027834 644028486 652 False 375.000000 375 77.892000 4801 5459 1 chr5A.!!$F1 658
10 TraesCS1B01G391400 chr5A 46279428 46282626 3198 True 341.666667 612 94.061333 4470 5461 3 chr5A.!!$R1 991
11 TraesCS1B01G391400 chr7B 548074700 548075574 874 False 1129.000000 1129 89.910000 4570 5456 1 chr7B.!!$F1 886
12 TraesCS1B01G391400 chr2A 32262919 32263482 563 True 676.000000 676 88.636000 4570 5128 1 chr2A.!!$R1 558
13 TraesCS1B01G391400 chr7A 90329783 90331156 1373 True 488.000000 556 86.704000 4471 5378 2 chr7A.!!$R1 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 481 0.178990 AGCCTTCCACAGTTTCACCC 60.179 55.0 0.00 0.00 0.00 4.61 F
1405 1519 0.103208 GACGAGCCGAATCCACAGAT 59.897 55.0 1.50 0.00 0.00 2.90 F
2464 2734 0.038310 CCCGAAAAGAGGGCCTTTCT 59.962 55.0 7.89 3.24 43.90 2.52 F
3212 3501 0.027455 CAGCGCTTTTGTTGACGTCA 59.973 50.0 15.76 15.76 0.00 4.35 F
3526 4271 0.975135 ATCTCTCTCATGGGCCATCG 59.025 55.0 18.16 12.59 0.00 3.84 F
4278 5032 0.961019 GGTTCATGTCAGCAGGCAAA 59.039 50.0 0.00 0.00 0.00 3.68 F
5640 9999 1.173043 TTTAGCCTGGTTTGCATCCG 58.827 50.0 0.00 0.00 0.00 4.18 F
5989 10353 0.468226 TGCGGGGGATGTAGATTGAC 59.532 55.0 0.00 0.00 0.00 3.18 F
7302 11673 0.531974 GAAACTGGACGACACAGCCA 60.532 55.0 0.00 0.00 39.55 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 1595 0.030235 CTTCGACACAGACACCGACA 59.970 55.000 0.00 0.00 0.00 4.35 R
3178 3467 0.031857 CGCTGATGAGGCTACTGGAG 59.968 60.000 0.00 0.00 0.00 3.86 R
4096 4846 1.271926 GCTCCCACTTTTCAGGGCTTA 60.272 52.381 0.00 0.00 45.07 3.09 R
4128 4878 1.438651 GGATCGCTTGCTGTTGTACA 58.561 50.000 0.00 0.00 0.00 2.90 R
5196 8697 3.938963 CCTTGCGTTCTTTATAGCCAAGA 59.061 43.478 0.00 0.00 0.00 3.02 R
5970 10334 0.468226 GTCAATCTACATCCCCCGCA 59.532 55.000 0.00 0.00 0.00 5.69 R
7028 11399 0.252761 TTTCGAGATCATGGCTGCCA 59.747 50.000 25.65 25.65 38.19 4.92 R
7336 11707 0.542232 TCGGGGGCCTTCTATAGCTC 60.542 60.000 0.84 0.00 0.00 4.09 R
8306 12971 0.111639 ATTGGTTGGTAGGTTGGCGT 59.888 50.000 0.00 0.00 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.454161 GTGGTAAATGGATTTGTTTTGGGC 59.546 41.667 0.00 0.00 0.00 5.36
29 30 2.470983 AATGGATTTGTTTTGGGCGG 57.529 45.000 0.00 0.00 0.00 6.13
31 32 0.470080 TGGATTTGTTTTGGGCGGGA 60.470 50.000 0.00 0.00 0.00 5.14
32 33 0.901827 GGATTTGTTTTGGGCGGGAT 59.098 50.000 0.00 0.00 0.00 3.85
72 73 0.668535 AGACCTCTTTTTGTTGCGCC 59.331 50.000 4.18 0.00 0.00 6.53
86 87 2.052104 GCGCCTAGCCCCACAAAAT 61.052 57.895 0.00 0.00 40.81 1.82
89 90 2.306847 CGCCTAGCCCCACAAAATAAT 58.693 47.619 0.00 0.00 0.00 1.28
90 91 3.482436 CGCCTAGCCCCACAAAATAATA 58.518 45.455 0.00 0.00 0.00 0.98
131 132 0.813184 ATTGTGCCAAAGATGCTCCG 59.187 50.000 0.00 0.00 0.00 4.63
137 138 0.602562 CCAAAGATGCTCCGCCAAAA 59.397 50.000 0.00 0.00 0.00 2.44
173 174 2.803956 TCGACCCGAACACTGAATTTTC 59.196 45.455 0.00 0.00 31.06 2.29
206 216 1.076485 CAAAGCCAGCCCATAGCCT 60.076 57.895 0.00 0.00 45.47 4.58
212 222 1.377994 CAGCCCATAGCCTGATCCC 59.622 63.158 0.00 0.00 45.47 3.85
216 226 1.820877 GCCCATAGCCTGATCCCAAAG 60.821 57.143 0.00 0.00 34.35 2.77
380 390 9.781834 CATTACTTTATGAAATTAACGGCTCAA 57.218 29.630 0.00 0.00 0.00 3.02
432 442 7.510675 TGAAAAATATGAGGTAAGAGGGAGT 57.489 36.000 0.00 0.00 0.00 3.85
466 476 1.002087 CCGTCTAGCCTTCCACAGTTT 59.998 52.381 0.00 0.00 0.00 2.66
471 481 0.178990 AGCCTTCCACAGTTTCACCC 60.179 55.000 0.00 0.00 0.00 4.61
500 510 5.447279 CCTTTGTAATAACTGACATGGCGAC 60.447 44.000 0.00 0.00 0.00 5.19
518 528 0.311790 ACGGTTGAAGCACTTGCATG 59.688 50.000 3.62 0.00 45.16 4.06
628 640 3.802139 GCAACAATGATGCTGATGGATTG 59.198 43.478 8.28 0.00 40.64 2.67
681 694 7.202102 GGGAAGACATATATGGATATGGTACCC 60.202 44.444 16.96 11.58 46.42 3.69
688 701 9.170890 CATATATGGATATGGTACCCCACTATT 57.829 37.037 10.07 0.00 45.65 1.73
693 706 3.577805 ATGGTACCCCACTATTCTTGC 57.422 47.619 10.07 0.00 45.65 4.01
806 821 9.705290 AAATAAATAAACCTAGTGCCTTTGTTG 57.295 29.630 0.00 0.00 0.00 3.33
807 822 5.722021 AATAAACCTAGTGCCTTTGTTGG 57.278 39.130 0.00 0.00 0.00 3.77
877 907 5.954335 ACATACTGTGCCTAAAATGAAAGC 58.046 37.500 0.00 0.00 0.00 3.51
938 973 5.350504 TTCTTGGTTCAAGCAATGGAAAA 57.649 34.783 1.70 0.00 40.84 2.29
956 1025 3.695830 AAACTAATCTCCGCCTCACAA 57.304 42.857 0.00 0.00 0.00 3.33
972 1063 3.885297 CTCACAATCTCTCTCCCTCTCTC 59.115 52.174 0.00 0.00 0.00 3.20
974 1065 3.633525 CACAATCTCTCTCCCTCTCTCTG 59.366 52.174 0.00 0.00 0.00 3.35
979 1070 1.843851 TCTCTCCCTCTCTCTGTCTCC 59.156 57.143 0.00 0.00 0.00 3.71
980 1071 1.563879 CTCTCCCTCTCTCTGTCTCCA 59.436 57.143 0.00 0.00 0.00 3.86
981 1072 1.563879 TCTCCCTCTCTCTGTCTCCAG 59.436 57.143 0.00 0.00 40.25 3.86
983 1074 1.383456 CCCTCTCTCTGTCTCCAGCG 61.383 65.000 0.00 0.00 38.66 5.18
985 1076 2.101965 CTCTCTGTCTCCAGCGCG 59.898 66.667 0.00 0.00 38.66 6.86
986 1077 3.408501 CTCTCTGTCTCCAGCGCGG 62.409 68.421 8.83 11.37 38.66 6.46
1184 1289 1.072505 CCACCACCGGTAAGCAGTT 59.927 57.895 6.87 0.00 32.11 3.16
1185 1290 1.234615 CCACCACCGGTAAGCAGTTG 61.235 60.000 6.87 0.00 32.11 3.16
1233 1338 2.598632 CCGCCTGATTCGATTCGCC 61.599 63.158 0.00 0.00 0.00 5.54
1327 1432 2.144078 TCAAAGACCACCCGGAGCA 61.144 57.895 0.73 0.00 35.59 4.26
1332 1437 4.643387 ACCACCCGGAGCACAAGC 62.643 66.667 0.73 0.00 36.97 4.01
1398 1512 3.313257 GCGTCGACGAGCCGAATC 61.313 66.667 39.74 16.64 43.02 2.52
1399 1513 2.651232 CGTCGACGAGCCGAATCC 60.651 66.667 33.35 0.00 43.02 3.01
1400 1514 2.488355 GTCGACGAGCCGAATCCA 59.512 61.111 0.00 0.00 40.51 3.41
1401 1515 1.872679 GTCGACGAGCCGAATCCAC 60.873 63.158 0.00 0.00 40.51 4.02
1402 1516 2.180769 CGACGAGCCGAATCCACA 59.819 61.111 1.50 0.00 0.00 4.17
1403 1517 1.874019 CGACGAGCCGAATCCACAG 60.874 63.158 1.50 0.00 0.00 3.66
1404 1518 1.511305 GACGAGCCGAATCCACAGA 59.489 57.895 1.50 0.00 0.00 3.41
1405 1519 0.103208 GACGAGCCGAATCCACAGAT 59.897 55.000 1.50 0.00 0.00 2.90
1493 1610 1.660575 CGGTGTCGGTGTCTGTGTC 60.661 63.158 0.00 0.00 0.00 3.67
1503 1620 1.286260 GTCTGTGTCGAAGCGGAGT 59.714 57.895 0.00 0.00 0.00 3.85
1597 1714 1.298014 GTGCCTTGGAGGAGAGTGG 59.702 63.158 0.00 0.00 37.67 4.00
1606 1723 0.543174 GAGGAGAGTGGGACTGTGGT 60.543 60.000 0.00 0.00 0.00 4.16
1607 1724 0.784495 AGGAGAGTGGGACTGTGGTA 59.216 55.000 0.00 0.00 0.00 3.25
1608 1725 1.362932 AGGAGAGTGGGACTGTGGTAT 59.637 52.381 0.00 0.00 0.00 2.73
1690 1822 3.077617 GCTCTGCCACTCAGGATTC 57.922 57.895 0.00 0.00 43.06 2.52
1691 1823 0.540923 GCTCTGCCACTCAGGATTCT 59.459 55.000 0.00 0.00 43.06 2.40
1692 1824 1.743091 GCTCTGCCACTCAGGATTCTG 60.743 57.143 0.00 0.00 43.06 3.02
1693 1825 1.829849 CTCTGCCACTCAGGATTCTGA 59.170 52.381 3.02 3.02 46.81 3.27
1694 1826 1.552337 TCTGCCACTCAGGATTCTGAC 59.448 52.381 0.00 0.00 44.39 3.51
1695 1827 1.277273 CTGCCACTCAGGATTCTGACA 59.723 52.381 0.00 0.00 44.39 3.58
1696 1828 1.002430 TGCCACTCAGGATTCTGACAC 59.998 52.381 0.00 0.00 44.39 3.67
1697 1829 1.277557 GCCACTCAGGATTCTGACACT 59.722 52.381 0.00 0.00 44.39 3.55
1746 1878 2.938798 AAGGGGCCACGGAATCCA 60.939 61.111 4.39 0.00 0.00 3.41
1764 1896 1.633432 CCAGAGTTACCATCCCACCAA 59.367 52.381 0.00 0.00 0.00 3.67
1785 1917 4.104143 CGGTATGTGTTCCTCCGC 57.896 61.111 0.00 0.00 35.01 5.54
1786 1918 1.216977 CGGTATGTGTTCCTCCGCA 59.783 57.895 0.00 0.00 35.01 5.69
1795 1927 0.659957 GTTCCTCCGCATGCTCAATC 59.340 55.000 17.13 0.00 0.00 2.67
1798 1930 0.179065 CCTCCGCATGCTCAATCAGA 60.179 55.000 17.13 0.26 0.00 3.27
1819 1951 8.545229 TCAGACAATTTCTCTCTGATTTCTTC 57.455 34.615 0.00 0.00 36.37 2.87
1833 1965 5.368145 TGATTTCTTCACTTGCTGTGTACT 58.632 37.500 9.53 0.00 46.27 2.73
1879 2125 7.761704 TGCTGCAAAAGACAGTAAATTTGTAAA 59.238 29.630 0.00 0.00 37.47 2.01
1903 2149 8.443953 AAATTGTTAATCAGCTCATCTAGGTC 57.556 34.615 0.00 0.00 32.16 3.85
2020 2266 4.072131 TGAACATACTCCTGGTTTTCTGC 58.928 43.478 0.00 0.00 0.00 4.26
2059 2306 7.201705 CGGACCATAACCTTTTATCTTTTCTCC 60.202 40.741 0.00 0.00 0.00 3.71
2195 2442 3.753294 TTTTGTTTCGCTCTCTCCTCT 57.247 42.857 0.00 0.00 0.00 3.69
2225 2473 5.860611 TGACCATATATTTTAGGGACCACG 58.139 41.667 0.00 0.00 0.00 4.94
2231 2479 8.319146 CCATATATTTTAGGGACCACGTCTTAT 58.681 37.037 0.00 0.00 32.47 1.73
2260 2508 2.284921 CTCAGGGCTCAGGGTCCA 60.285 66.667 0.00 0.00 43.45 4.02
2279 2527 1.531149 CAGTATTTAAGGCCCATCGCG 59.469 52.381 0.00 0.00 38.94 5.87
2296 2544 4.136517 TCGCGTTATTGGTCAAACTTTC 57.863 40.909 5.77 0.00 0.00 2.62
2298 2546 3.906008 CGCGTTATTGGTCAAACTTTCAG 59.094 43.478 0.00 0.00 0.00 3.02
2342 2592 8.661352 AATATGGGTTATGCATAACAAAAAGC 57.339 30.769 37.49 24.37 43.33 3.51
2408 2658 7.203255 ACTCTTTTGTAGCCACTTATGTTTC 57.797 36.000 0.00 0.00 0.00 2.78
2417 2687 4.760204 AGCCACTTATGTTTCGCTAGTTTT 59.240 37.500 0.00 0.00 0.00 2.43
2462 2732 4.843624 CCCGAAAAGAGGGCCTTT 57.156 55.556 7.89 0.00 46.47 3.11
2463 2733 2.568003 CCCGAAAAGAGGGCCTTTC 58.432 57.895 7.89 6.97 43.90 2.62
2464 2734 0.038310 CCCGAAAAGAGGGCCTTTCT 59.962 55.000 7.89 3.24 43.90 2.52
2551 2835 5.841810 TGGTCTGGAAATTTAAGTGCAAAG 58.158 37.500 0.00 0.00 0.00 2.77
2696 2980 6.319048 ACACCTTGAAACTATGATCTGGAT 57.681 37.500 0.00 0.00 0.00 3.41
2735 3019 4.093556 GGAAATAACCTTCTGAGCAAGACG 59.906 45.833 0.00 0.00 33.46 4.18
2737 3021 2.622064 AACCTTCTGAGCAAGACGTT 57.378 45.000 0.00 0.00 33.46 3.99
2753 3037 1.602377 ACGTTTACTTCTGGCTTGTGC 59.398 47.619 0.00 0.00 38.76 4.57
2756 3040 1.565156 TTACTTCTGGCTTGTGCGCG 61.565 55.000 0.00 0.00 40.82 6.86
2766 3050 1.201780 GCTTGTGCGCGTAGAACTTAC 60.202 52.381 8.43 0.00 0.00 2.34
2767 3051 2.325761 CTTGTGCGCGTAGAACTTACT 58.674 47.619 8.43 0.00 0.00 2.24
2777 3061 6.345093 GCGCGTAGAACTTACTCTATGAATTG 60.345 42.308 8.43 0.00 37.17 2.32
2874 3158 4.536765 AGAAGTTCACAACAAGGTGGATT 58.463 39.130 5.50 0.00 39.27 3.01
2930 3214 9.392259 TCTGATAAGTACGACTTTCTTCATCTA 57.608 33.333 5.74 0.00 39.51 1.98
2980 3264 1.275666 CCATAGGTGGTCACTGGTCA 58.724 55.000 0.93 0.00 40.83 4.02
2981 3265 1.208052 CCATAGGTGGTCACTGGTCAG 59.792 57.143 0.93 0.00 40.83 3.51
2982 3266 0.905357 ATAGGTGGTCACTGGTCAGC 59.095 55.000 0.93 0.00 0.00 4.26
2995 3279 2.353889 CTGGTCAGCATCATCTTTTCCG 59.646 50.000 0.00 0.00 0.00 4.30
3003 3287 6.366061 TCAGCATCATCTTTTCCGTATAATCG 59.634 38.462 0.00 0.00 0.00 3.34
3004 3288 5.120830 AGCATCATCTTTTCCGTATAATCGC 59.879 40.000 0.00 0.00 0.00 4.58
3006 3290 6.528826 CATCATCTTTTCCGTATAATCGCTG 58.471 40.000 0.00 0.00 0.00 5.18
3019 3303 1.012086 ATCGCTGTGTGCTGCTATTG 58.988 50.000 0.00 0.00 40.11 1.90
3025 3309 0.795735 GTGTGCTGCTATTGCTTGCG 60.796 55.000 0.00 0.00 40.26 4.85
3035 3319 4.096833 TGCTATTGCTTGCGAAGATGAATT 59.903 37.500 0.00 0.00 40.48 2.17
3083 3371 7.145932 AGTTATGCATCTCTGTAACCAAAAC 57.854 36.000 0.19 0.00 0.00 2.43
3084 3372 6.151144 AGTTATGCATCTCTGTAACCAAAACC 59.849 38.462 0.19 0.00 0.00 3.27
3085 3373 4.098914 TGCATCTCTGTAACCAAAACCT 57.901 40.909 0.00 0.00 0.00 3.50
3086 3374 5.235850 TGCATCTCTGTAACCAAAACCTA 57.764 39.130 0.00 0.00 0.00 3.08
3087 3375 5.815581 TGCATCTCTGTAACCAAAACCTAT 58.184 37.500 0.00 0.00 0.00 2.57
3088 3376 5.647658 TGCATCTCTGTAACCAAAACCTATG 59.352 40.000 0.00 0.00 0.00 2.23
3089 3377 5.449177 GCATCTCTGTAACCAAAACCTATGC 60.449 44.000 0.00 0.00 0.00 3.14
3135 3423 9.843334 AAACTTTAAACACAATCTTAACGAACA 57.157 25.926 0.00 0.00 0.00 3.18
3136 3424 9.843334 AACTTTAAACACAATCTTAACGAACAA 57.157 25.926 0.00 0.00 0.00 2.83
3178 3467 6.649141 TGTTCAATGTTCATATATAGGACGGC 59.351 38.462 0.00 0.00 0.00 5.68
3195 3484 3.984838 GCTCCAGTAGCCTCATCAG 57.015 57.895 0.00 0.00 46.25 2.90
3209 3498 1.069973 TCATCAGCGCTTTTGTTGACG 60.070 47.619 7.50 0.00 0.00 4.35
3212 3501 0.027455 CAGCGCTTTTGTTGACGTCA 59.973 50.000 15.76 15.76 0.00 4.35
3252 3541 6.239232 GCCTCATCCTTCGAAGGTAATAACTA 60.239 42.308 36.74 19.96 46.54 2.24
3259 3548 6.462487 CCTTCGAAGGTAATAACTATCCTGCA 60.462 42.308 32.16 0.00 41.41 4.41
3279 3568 1.838112 TCTGCATTTTCCGAATGGCT 58.162 45.000 0.00 0.00 34.14 4.75
3284 3573 2.094545 GCATTTTCCGAATGGCTGAAGT 60.095 45.455 1.47 0.00 34.14 3.01
3364 4107 1.877680 GCACACCAAATTTTCCTGGGC 60.878 52.381 0.00 0.00 37.00 5.36
3468 4213 1.627297 CCCACCCTCTAGAACTGCCC 61.627 65.000 0.00 0.00 0.00 5.36
3474 4219 1.556911 CCTCTAGAACTGCCCATGTGT 59.443 52.381 0.00 0.00 0.00 3.72
3490 4235 3.483808 TGTGTCAGTCAATGCTACCAA 57.516 42.857 0.00 0.00 0.00 3.67
3526 4271 0.975135 ATCTCTCTCATGGGCCATCG 59.025 55.000 18.16 12.59 0.00 3.84
3530 4275 2.301296 CTCTCTCATGGGCCATCGTAAT 59.699 50.000 18.16 0.00 0.00 1.89
3535 4280 2.305635 TCATGGGCCATCGTAATGCTAT 59.694 45.455 18.16 0.00 0.00 2.97
3622 4367 7.589221 GCGGAGAAGATGCTTATTTTATTGAAG 59.411 37.037 0.00 0.00 0.00 3.02
3685 4430 6.001460 TGGTCATTTGAAGGTTAGTAGGTTG 58.999 40.000 0.00 0.00 0.00 3.77
3734 4479 7.573710 AGTTTAACCTTATGTATCATGCCTGA 58.426 34.615 0.00 0.00 35.41 3.86
4072 4821 1.954146 CACTGTTGGTGGTCGTCCG 60.954 63.158 0.00 0.00 41.90 4.79
4096 4846 6.369065 CGTTAACTTTAGCAACATTCCTCTCT 59.631 38.462 3.71 0.00 0.00 3.10
4114 4864 2.305927 CTCTAAGCCCTGAAAAGTGGGA 59.694 50.000 1.75 0.00 46.15 4.37
4115 4865 2.305927 TCTAAGCCCTGAAAAGTGGGAG 59.694 50.000 1.75 0.00 46.15 4.30
4128 4878 3.906720 AGTGGGAGCATACAAACGTAT 57.093 42.857 0.00 0.00 0.00 3.06
4198 4951 1.003573 ATCTCCCCTCACCCCTCAC 59.996 63.158 0.00 0.00 0.00 3.51
4236 4990 6.210796 TCATTTTCATGTCAACAAGCTTCTG 58.789 36.000 0.00 0.00 0.00 3.02
4244 4998 5.670485 TGTCAACAAGCTTCTGTCTTTAGA 58.330 37.500 0.00 0.00 0.00 2.10
4278 5032 0.961019 GGTTCATGTCAGCAGGCAAA 59.039 50.000 0.00 0.00 0.00 3.68
4400 5255 2.163815 GACGACTATCGATATGTGGGGG 59.836 54.545 5.40 0.00 43.74 5.40
4420 5275 4.941873 GGGGAAAAGTTATTGACTGATCGT 59.058 41.667 0.00 0.00 39.00 3.73
4732 6083 2.185004 ACCAGGTTCGTCCTCAAATG 57.815 50.000 0.00 0.00 46.24 2.32
4733 6084 1.420138 ACCAGGTTCGTCCTCAAATGT 59.580 47.619 0.00 0.00 46.24 2.71
4741 6092 4.811555 TCGTCCTCAAATGTTTGTCTTG 57.188 40.909 5.48 0.00 39.18 3.02
5196 8697 4.922206 TGCTGGAAATTTCTGGATAGTGT 58.078 39.130 17.42 0.00 0.00 3.55
5565 9924 8.996024 AGCTTAATAAGAGTTGAAGTTCTCTC 57.004 34.615 3.88 15.69 39.70 3.20
5619 9978 7.886338 ACAATTTAGTGAGAAATCAAGAACCC 58.114 34.615 0.00 0.00 0.00 4.11
5626 9985 6.151817 AGTGAGAAATCAAGAACCCATTTAGC 59.848 38.462 0.00 0.00 0.00 3.09
5640 9999 1.173043 TTTAGCCTGGTTTGCATCCG 58.827 50.000 0.00 0.00 0.00 4.18
5704 10068 5.292101 CGGGATGATGACAAGAACTAAGTTC 59.708 44.000 0.00 0.00 42.25 3.01
5812 10176 5.012561 AGACTTAAGAGATGTGTCAAGCCTT 59.987 40.000 10.09 0.00 0.00 4.35
5985 10349 2.818751 TTTTTGCGGGGGATGTAGAT 57.181 45.000 0.00 0.00 0.00 1.98
5986 10350 2.818751 TTTTGCGGGGGATGTAGATT 57.181 45.000 0.00 0.00 0.00 2.40
5987 10351 2.051334 TTTGCGGGGGATGTAGATTG 57.949 50.000 0.00 0.00 0.00 2.67
5988 10352 1.208706 TTGCGGGGGATGTAGATTGA 58.791 50.000 0.00 0.00 0.00 2.57
5989 10353 0.468226 TGCGGGGGATGTAGATTGAC 59.532 55.000 0.00 0.00 0.00 3.18
5990 10354 0.468226 GCGGGGGATGTAGATTGACA 59.532 55.000 0.00 0.00 0.00 3.58
5991 10355 1.134220 GCGGGGGATGTAGATTGACAA 60.134 52.381 0.00 0.00 31.83 3.18
5992 10356 2.838736 CGGGGGATGTAGATTGACAAG 58.161 52.381 0.00 0.00 31.83 3.16
5993 10357 2.170607 CGGGGGATGTAGATTGACAAGT 59.829 50.000 0.00 0.00 31.83 3.16
5994 10358 3.370527 CGGGGGATGTAGATTGACAAGTT 60.371 47.826 0.00 0.00 31.83 2.66
6025 10389 5.966742 AAAAGTAGAAAACTGCAGGATCC 57.033 39.130 19.93 2.48 38.88 3.36
6072 10436 4.865925 TGTGCACTACCGAACACATTATAC 59.134 41.667 19.41 0.00 38.07 1.47
6079 10443 7.221452 CACTACCGAACACATTATACTTGTACC 59.779 40.741 0.00 0.00 0.00 3.34
6156 10520 5.230759 AGGATCATCACTCTTTAGGGGATT 58.769 41.667 0.00 0.00 0.00 3.01
6157 10521 6.393897 AGGATCATCACTCTTTAGGGGATTA 58.606 40.000 0.00 0.00 0.00 1.75
6168 10532 9.327731 ACTCTTTAGGGGATTATAATGTCCTAG 57.672 37.037 16.62 12.41 34.84 3.02
6203 10567 2.680339 GCCTTTGTTCACAGCCTCTATC 59.320 50.000 0.00 0.00 0.00 2.08
6204 10568 3.869912 GCCTTTGTTCACAGCCTCTATCA 60.870 47.826 0.00 0.00 0.00 2.15
6205 10569 4.521146 CCTTTGTTCACAGCCTCTATCAT 58.479 43.478 0.00 0.00 0.00 2.45
6206 10570 4.334759 CCTTTGTTCACAGCCTCTATCATG 59.665 45.833 0.00 0.00 0.00 3.07
6208 10572 4.397481 TGTTCACAGCCTCTATCATGAG 57.603 45.455 0.09 0.00 0.00 2.90
6209 10573 4.026052 TGTTCACAGCCTCTATCATGAGA 58.974 43.478 0.09 0.00 36.23 3.27
6211 10575 2.620585 TCACAGCCTCTATCATGAGACG 59.379 50.000 0.09 0.00 36.23 4.18
6212 10576 2.360483 CACAGCCTCTATCATGAGACGT 59.640 50.000 0.09 0.00 36.23 4.34
6239 10603 7.646314 CAGACAATTTTCTTCTTGAGATGTGT 58.354 34.615 0.00 0.00 33.49 3.72
6240 10604 7.590322 CAGACAATTTTCTTCTTGAGATGTGTG 59.410 37.037 0.00 0.00 32.27 3.82
6241 10605 7.284034 AGACAATTTTCTTCTTGAGATGTGTGT 59.716 33.333 0.00 0.00 33.49 3.72
6243 10607 7.917505 ACAATTTTCTTCTTGAGATGTGTGTTC 59.082 33.333 0.00 0.00 33.49 3.18
6268 10633 3.877508 GACTTCAAGTTAGGGCGCATTAT 59.122 43.478 10.83 0.00 0.00 1.28
6404 10771 4.704057 TGTATTTGGAATGCAGTGCACATA 59.296 37.500 22.44 9.23 43.04 2.29
6409 10776 4.525996 TGGAATGCAGTGCACATAGTTAT 58.474 39.130 22.44 0.00 43.04 1.89
6410 10777 4.949238 TGGAATGCAGTGCACATAGTTATT 59.051 37.500 22.44 8.10 43.04 1.40
6411 10778 5.066375 TGGAATGCAGTGCACATAGTTATTC 59.934 40.000 22.44 16.67 43.04 1.75
6412 10779 4.801147 ATGCAGTGCACATAGTTATTCG 57.199 40.909 22.44 0.00 43.04 3.34
6413 10780 3.595173 TGCAGTGCACATAGTTATTCGT 58.405 40.909 21.04 0.00 31.71 3.85
6414 10781 4.749976 TGCAGTGCACATAGTTATTCGTA 58.250 39.130 21.04 0.00 31.71 3.43
6415 10782 5.172205 TGCAGTGCACATAGTTATTCGTAA 58.828 37.500 21.04 0.00 31.71 3.18
6416 10783 5.815222 TGCAGTGCACATAGTTATTCGTAAT 59.185 36.000 21.04 0.00 31.71 1.89
6517 10884 5.591877 AGAGCTTATGGATGGCTGTAAAAAG 59.408 40.000 0.00 0.00 36.37 2.27
6551 10918 0.612229 TGAAGGAGGCTCTGAGCTTG 59.388 55.000 27.09 0.00 41.99 4.01
6553 10920 2.511145 GGAGGCTCTGAGCTTGCG 60.511 66.667 27.09 0.00 41.99 4.85
6556 10923 4.774503 GGCTCTGAGCTTGCGCCT 62.775 66.667 27.09 0.00 41.99 5.52
6592 10959 2.126424 GCTGCAGCAGAAGCAAGC 60.126 61.111 33.36 5.61 46.44 4.01
6645 11012 1.815003 CTTTGATGGCCAGGTCTGTTC 59.185 52.381 13.05 1.79 0.00 3.18
6660 11027 4.142881 GGTCTGTTCTTTTATCAAGACCGC 60.143 45.833 4.06 0.00 35.83 5.68
6662 11029 2.739913 TGTTCTTTTATCAAGACCGCCG 59.260 45.455 0.00 0.00 0.00 6.46
6680 11047 3.010420 GCCGCAGTTCTTATTTCTCCTT 58.990 45.455 0.00 0.00 0.00 3.36
6707 11078 9.561069 GTGTCATACTTATTGGACCTATCATTT 57.439 33.333 0.00 0.00 0.00 2.32
6774 11145 6.846505 TCTGGTGATAAGGAATGGAGAAGTAT 59.153 38.462 0.00 0.00 0.00 2.12
6775 11146 6.830912 TGGTGATAAGGAATGGAGAAGTATG 58.169 40.000 0.00 0.00 0.00 2.39
6863 11234 4.141688 CCCTTAACCCTTGTAGAGGTGATC 60.142 50.000 0.00 0.00 44.71 2.92
6864 11235 4.717280 CCTTAACCCTTGTAGAGGTGATCT 59.283 45.833 0.00 0.00 44.71 2.75
6865 11236 5.189934 CCTTAACCCTTGTAGAGGTGATCTT 59.810 44.000 0.00 0.00 44.71 2.40
6866 11237 6.296489 CCTTAACCCTTGTAGAGGTGATCTTT 60.296 42.308 0.00 0.00 44.71 2.52
6902 11273 4.519350 CCAAGTCTAGACTCGCACCATATA 59.481 45.833 25.34 0.00 41.58 0.86
6936 11307 4.214986 TCAACACTCTTGTTTCCACTGA 57.785 40.909 0.00 0.00 43.89 3.41
6976 11347 4.021104 CCATTGACATAGAGGAAGGCGATA 60.021 45.833 0.00 0.00 0.00 2.92
7027 11398 3.483196 CGACAACGTCTACGAACAAGAAA 59.517 43.478 9.86 0.00 43.02 2.52
7028 11399 4.147653 CGACAACGTCTACGAACAAGAAAT 59.852 41.667 9.86 0.00 43.02 2.17
7068 11439 5.831702 AATCTTTGCAGGCAGATCTAAAG 57.168 39.130 0.00 0.78 0.00 1.85
7080 11451 3.006323 CAGATCTAAAGCCAGCGGTAGAT 59.994 47.826 14.29 14.29 36.29 1.98
7147 11518 4.319046 CGGTCTCAAGATTAAATGATGGCG 60.319 45.833 0.00 0.00 0.00 5.69
7165 11536 1.536284 GCGCGCCTGACTATTCTACTT 60.536 52.381 23.24 0.00 0.00 2.24
7302 11673 0.531974 GAAACTGGACGACACAGCCA 60.532 55.000 0.00 0.00 39.55 4.75
7316 11687 1.078709 CAGCCATCGTTGTGTCGATT 58.921 50.000 0.00 0.00 46.31 3.34
7375 11749 3.502211 CGAGGTGACAAGCTATTTTGGTT 59.498 43.478 0.00 0.00 33.19 3.67
7399 11773 1.373371 CAGCTGCACGCACTGTCTA 60.373 57.895 0.00 0.00 42.61 2.59
7400 11774 0.738762 CAGCTGCACGCACTGTCTAT 60.739 55.000 0.00 0.00 42.61 1.98
7406 11780 1.201965 GCACGCACTGTCTATGAAAGC 60.202 52.381 0.00 0.00 0.00 3.51
7428 11802 4.702392 CGTTGCATCAGTAGTTCAGAAAC 58.298 43.478 0.00 0.00 35.50 2.78
7437 11811 1.209128 AGTTCAGAAACTGCGACACG 58.791 50.000 0.00 0.00 44.13 4.49
7438 11812 0.928229 GTTCAGAAACTGCGACACGT 59.072 50.000 0.00 0.00 32.36 4.49
7452 11846 1.369209 CACGTGCAAAGTTCGCCTG 60.369 57.895 0.82 0.00 0.00 4.85
7456 11850 0.941542 GTGCAAAGTTCGCCTGTGTA 59.058 50.000 0.00 0.00 30.30 2.90
7467 11861 4.959596 TCGCCTGTGTAAAGTAGTCTAG 57.040 45.455 0.00 0.00 0.00 2.43
7476 11870 9.182933 CTGTGTAAAGTAGTCTAGTTCAAGAAC 57.817 37.037 4.82 4.82 41.45 3.01
7481 11875 6.726490 AGTAGTCTAGTTCAAGAACCACAA 57.274 37.500 9.20 0.00 42.06 3.33
7482 11876 7.304497 AGTAGTCTAGTTCAAGAACCACAAT 57.696 36.000 9.20 0.00 42.06 2.71
7483 11877 7.736893 AGTAGTCTAGTTCAAGAACCACAATT 58.263 34.615 9.20 0.00 42.06 2.32
7484 11878 7.873505 AGTAGTCTAGTTCAAGAACCACAATTC 59.126 37.037 9.20 0.00 42.06 2.17
7485 11879 5.696724 AGTCTAGTTCAAGAACCACAATTCG 59.303 40.000 9.20 0.00 42.06 3.34
7487 11881 2.293399 AGTTCAAGAACCACAATTCGCC 59.707 45.455 9.20 0.00 42.06 5.54
7488 11882 2.270352 TCAAGAACCACAATTCGCCT 57.730 45.000 0.00 0.00 33.57 5.52
7489 11883 3.410631 TCAAGAACCACAATTCGCCTA 57.589 42.857 0.00 0.00 33.57 3.93
7490 11884 3.950397 TCAAGAACCACAATTCGCCTAT 58.050 40.909 0.00 0.00 33.57 2.57
7500 11955 6.041637 ACCACAATTCGCCTATCTAAGTGATA 59.958 38.462 0.00 0.00 36.65 2.15
7524 11979 7.722795 ATAAATTTAAGTTTGGTGTTGGTGC 57.277 32.000 1.21 0.00 0.00 5.01
7563 12019 5.474532 GGGCTGTAGAAATATGATGCATGAA 59.525 40.000 2.46 0.00 0.00 2.57
7564 12020 6.016024 GGGCTGTAGAAATATGATGCATGAAA 60.016 38.462 2.46 0.00 0.00 2.69
7565 12021 7.428020 GGCTGTAGAAATATGATGCATGAAAA 58.572 34.615 2.46 0.00 0.00 2.29
7566 12022 8.086522 GGCTGTAGAAATATGATGCATGAAAAT 58.913 33.333 2.46 0.00 0.00 1.82
7567 12023 8.912658 GCTGTAGAAATATGATGCATGAAAATG 58.087 33.333 2.46 0.00 0.00 2.32
7568 12024 9.961265 CTGTAGAAATATGATGCATGAAAATGT 57.039 29.630 2.46 0.00 0.00 2.71
7588 12044 7.801547 AATGTAATTTTGTGCTCTTGAATCG 57.198 32.000 0.00 0.00 26.74 3.34
7589 12045 6.312399 TGTAATTTTGTGCTCTTGAATCGT 57.688 33.333 0.00 0.00 0.00 3.73
7590 12046 6.142139 TGTAATTTTGTGCTCTTGAATCGTG 58.858 36.000 0.00 0.00 0.00 4.35
7591 12047 5.437289 AATTTTGTGCTCTTGAATCGTGA 57.563 34.783 0.00 0.00 0.00 4.35
7592 12048 4.472691 TTTTGTGCTCTTGAATCGTGAG 57.527 40.909 0.00 0.00 0.00 3.51
7593 12049 2.084610 TGTGCTCTTGAATCGTGAGG 57.915 50.000 4.91 0.00 0.00 3.86
7594 12050 1.618343 TGTGCTCTTGAATCGTGAGGA 59.382 47.619 4.91 0.00 0.00 3.71
7595 12051 2.037121 TGTGCTCTTGAATCGTGAGGAA 59.963 45.455 4.91 0.00 30.45 3.36
7596 12052 2.670414 GTGCTCTTGAATCGTGAGGAAG 59.330 50.000 4.91 0.00 30.45 3.46
7597 12053 2.300152 TGCTCTTGAATCGTGAGGAAGT 59.700 45.455 4.91 0.00 0.00 3.01
7598 12054 2.670414 GCTCTTGAATCGTGAGGAAGTG 59.330 50.000 4.91 0.00 0.00 3.16
7599 12055 3.257393 CTCTTGAATCGTGAGGAAGTGG 58.743 50.000 0.00 0.00 0.00 4.00
7600 12056 2.632996 TCTTGAATCGTGAGGAAGTGGT 59.367 45.455 0.00 0.00 0.00 4.16
7601 12057 3.830178 TCTTGAATCGTGAGGAAGTGGTA 59.170 43.478 0.00 0.00 0.00 3.25
7602 12058 3.868757 TGAATCGTGAGGAAGTGGTAG 57.131 47.619 0.00 0.00 0.00 3.18
7603 12059 2.496070 TGAATCGTGAGGAAGTGGTAGG 59.504 50.000 0.00 0.00 0.00 3.18
7604 12060 2.526888 ATCGTGAGGAAGTGGTAGGA 57.473 50.000 0.00 0.00 0.00 2.94
7605 12061 2.297698 TCGTGAGGAAGTGGTAGGAA 57.702 50.000 0.00 0.00 0.00 3.36
7606 12062 2.168496 TCGTGAGGAAGTGGTAGGAAG 58.832 52.381 0.00 0.00 0.00 3.46
7607 12063 1.204941 CGTGAGGAAGTGGTAGGAAGG 59.795 57.143 0.00 0.00 0.00 3.46
7608 12064 2.537143 GTGAGGAAGTGGTAGGAAGGA 58.463 52.381 0.00 0.00 0.00 3.36
7609 12065 2.904434 GTGAGGAAGTGGTAGGAAGGAA 59.096 50.000 0.00 0.00 0.00 3.36
7610 12066 2.904434 TGAGGAAGTGGTAGGAAGGAAC 59.096 50.000 0.00 0.00 0.00 3.62
7611 12067 2.236644 GAGGAAGTGGTAGGAAGGAACC 59.763 54.545 0.00 0.00 36.24 3.62
7612 12068 1.982958 GGAAGTGGTAGGAAGGAACCA 59.017 52.381 0.00 0.00 43.47 3.67
7613 12069 2.374170 GGAAGTGGTAGGAAGGAACCAA 59.626 50.000 0.00 0.00 46.97 3.67
7614 12070 3.559384 GGAAGTGGTAGGAAGGAACCAAG 60.559 52.174 0.00 0.00 46.97 3.61
7615 12071 1.351350 AGTGGTAGGAAGGAACCAAGC 59.649 52.381 0.00 0.00 46.97 4.01
7616 12072 0.696501 TGGTAGGAAGGAACCAAGCC 59.303 55.000 0.00 0.00 42.74 4.35
7617 12073 0.696501 GGTAGGAAGGAACCAAGCCA 59.303 55.000 0.00 0.00 35.73 4.75
7618 12074 1.285078 GGTAGGAAGGAACCAAGCCAT 59.715 52.381 0.00 0.00 35.73 4.40
7619 12075 2.644676 GTAGGAAGGAACCAAGCCATC 58.355 52.381 0.00 0.00 0.00 3.51
7620 12076 1.376649 AGGAAGGAACCAAGCCATCT 58.623 50.000 0.00 0.00 0.00 2.90
7621 12077 2.562296 AGGAAGGAACCAAGCCATCTA 58.438 47.619 0.00 0.00 0.00 1.98
7622 12078 2.507471 AGGAAGGAACCAAGCCATCTAG 59.493 50.000 0.00 0.00 0.00 2.43
7623 12079 2.239907 GGAAGGAACCAAGCCATCTAGT 59.760 50.000 0.00 0.00 0.00 2.57
7624 12080 3.536570 GAAGGAACCAAGCCATCTAGTC 58.463 50.000 0.00 0.00 0.00 2.59
7625 12081 2.551270 AGGAACCAAGCCATCTAGTCA 58.449 47.619 0.00 0.00 0.00 3.41
7626 12082 2.912956 AGGAACCAAGCCATCTAGTCAA 59.087 45.455 0.00 0.00 0.00 3.18
7627 12083 3.330701 AGGAACCAAGCCATCTAGTCAAA 59.669 43.478 0.00 0.00 0.00 2.69
7628 12084 3.691609 GGAACCAAGCCATCTAGTCAAAG 59.308 47.826 0.00 0.00 0.00 2.77
7629 12085 4.327680 GAACCAAGCCATCTAGTCAAAGT 58.672 43.478 0.00 0.00 0.00 2.66
7630 12086 4.373156 ACCAAGCCATCTAGTCAAAGTT 57.627 40.909 0.00 0.00 0.00 2.66
7631 12087 4.074970 ACCAAGCCATCTAGTCAAAGTTG 58.925 43.478 0.00 0.00 0.00 3.16
7632 12088 4.202461 ACCAAGCCATCTAGTCAAAGTTGA 60.202 41.667 0.00 0.00 34.20 3.18
7633 12089 4.761739 CCAAGCCATCTAGTCAAAGTTGAA 59.238 41.667 0.00 0.00 39.21 2.69
7634 12090 5.241506 CCAAGCCATCTAGTCAAAGTTGAAA 59.758 40.000 0.00 0.00 39.21 2.69
7635 12091 6.071728 CCAAGCCATCTAGTCAAAGTTGAAAT 60.072 38.462 0.00 0.00 39.21 2.17
7636 12092 7.121168 CCAAGCCATCTAGTCAAAGTTGAAATA 59.879 37.037 0.00 0.00 39.21 1.40
7637 12093 8.680903 CAAGCCATCTAGTCAAAGTTGAAATAT 58.319 33.333 0.00 0.00 39.21 1.28
7638 12094 9.905713 AAGCCATCTAGTCAAAGTTGAAATATA 57.094 29.630 0.00 0.00 39.21 0.86
7639 12095 9.905713 AGCCATCTAGTCAAAGTTGAAATATAA 57.094 29.630 0.00 0.00 39.21 0.98
7668 12124 8.969121 TGCATTTAAACTGTAACATTCATGAG 57.031 30.769 0.00 0.00 0.00 2.90
7672 12128 8.795786 TTTAAACTGTAACATTCATGAGCAAC 57.204 30.769 0.00 0.00 0.00 4.17
7689 12145 3.129287 AGCAACACATGATCGGAAATTCC 59.871 43.478 0.99 0.99 0.00 3.01
7716 12172 5.227908 CGTCAAGTTGTTACTGGTACATCT 58.772 41.667 2.11 0.00 38.20 2.90
7717 12173 5.345202 CGTCAAGTTGTTACTGGTACATCTC 59.655 44.000 2.11 0.00 38.20 2.75
7739 12393 5.630121 TCCACACTGTCAATTGTATCCTTT 58.370 37.500 5.13 0.00 0.00 3.11
7746 12400 9.722056 CACTGTCAATTGTATCCTTTTATTAGC 57.278 33.333 5.13 0.00 0.00 3.09
7749 12403 9.337396 TGTCAATTGTATCCTTTTATTAGCGAT 57.663 29.630 5.13 0.00 0.00 4.58
7760 12414 7.990886 TCCTTTTATTAGCGATGATACACCTTT 59.009 33.333 0.00 0.00 0.00 3.11
7764 12418 3.627395 AGCGATGATACACCTTTTCCA 57.373 42.857 0.00 0.00 0.00 3.53
7766 12420 2.030457 GCGATGATACACCTTTTCCACG 59.970 50.000 0.00 0.00 0.00 4.94
7767 12421 3.259064 CGATGATACACCTTTTCCACGT 58.741 45.455 0.00 0.00 0.00 4.49
7773 12427 5.533154 TGATACACCTTTTCCACGTTGAATT 59.467 36.000 2.55 0.00 0.00 2.17
7774 12428 4.301637 ACACCTTTTCCACGTTGAATTC 57.698 40.909 2.55 0.00 0.00 2.17
7775 12429 3.067601 ACACCTTTTCCACGTTGAATTCC 59.932 43.478 2.55 0.00 0.00 3.01
7776 12430 3.067461 CACCTTTTCCACGTTGAATTCCA 59.933 43.478 2.55 0.00 0.00 3.53
7777 12431 3.317993 ACCTTTTCCACGTTGAATTCCAG 59.682 43.478 2.55 0.00 0.00 3.86
7822 12481 8.964476 TCCATCAAAATATACAAGGTCTCTTC 57.036 34.615 0.00 0.00 0.00 2.87
7840 12499 6.963805 GTCTCTTCGAATTTTGAGGCTAATTG 59.036 38.462 8.93 0.00 0.00 2.32
7928 12587 7.723616 TCATATTTGAAAGAGGTTTTCAGTGGA 59.276 33.333 3.00 0.00 39.30 4.02
7930 12589 5.576447 TTGAAAGAGGTTTTCAGTGGAAC 57.424 39.130 3.00 0.00 39.30 3.62
7934 12593 3.288092 AGAGGTTTTCAGTGGAACAACC 58.712 45.455 10.91 5.10 44.16 3.77
7936 12595 3.699538 GAGGTTTTCAGTGGAACAACCTT 59.300 43.478 8.66 0.00 44.83 3.50
7938 12597 4.081697 AGGTTTTCAGTGGAACAACCTTTG 60.082 41.667 2.06 0.00 43.77 2.77
7953 12612 3.886123 ACCTTTGTGGCATATACCTCAC 58.114 45.455 0.00 0.00 40.22 3.51
7954 12613 3.214328 CCTTTGTGGCATATACCTCACC 58.786 50.000 0.00 0.00 33.12 4.02
7955 12614 3.371487 CCTTTGTGGCATATACCTCACCA 60.371 47.826 0.00 0.00 33.12 4.17
8065 12726 7.060421 ACACTCCTTCCTCAAAATTAAACTCA 58.940 34.615 0.00 0.00 0.00 3.41
8078 12739 2.403252 AAACTCATTGGCCTCCTACG 57.597 50.000 3.32 0.00 0.00 3.51
8079 12740 1.568504 AACTCATTGGCCTCCTACGA 58.431 50.000 3.32 0.00 0.00 3.43
8089 12750 5.818678 TGGCCTCCTACGAAAACATATAT 57.181 39.130 3.32 0.00 0.00 0.86
8130 12791 2.618053 CGATATGGTAATCGGAAGGGC 58.382 52.381 0.00 0.00 43.92 5.19
8131 12792 2.028476 CGATATGGTAATCGGAAGGGCA 60.028 50.000 0.00 0.00 43.92 5.36
8141 12803 2.311463 TCGGAAGGGCAAAAATGACAA 58.689 42.857 0.00 0.00 0.00 3.18
8191 12855 9.151471 ACACGAGCCAATATATATGTATTTCAC 57.849 33.333 2.20 0.00 0.00 3.18
8230 12895 1.465777 GGTACATTGCGTTACCACCAC 59.534 52.381 0.00 0.00 33.04 4.16
8236 12901 0.249699 TGCGTTACCACCACAGACAG 60.250 55.000 0.00 0.00 0.00 3.51
8239 12904 2.546373 GCGTTACCACCACAGACAGTAA 60.546 50.000 0.00 0.00 0.00 2.24
8240 12905 3.863400 GCGTTACCACCACAGACAGTAAT 60.863 47.826 0.00 0.00 0.00 1.89
8241 12906 4.618927 GCGTTACCACCACAGACAGTAATA 60.619 45.833 0.00 0.00 0.00 0.98
8242 12907 4.860907 CGTTACCACCACAGACAGTAATAC 59.139 45.833 0.00 0.00 0.00 1.89
8243 12908 5.565242 CGTTACCACCACAGACAGTAATACA 60.565 44.000 0.00 0.00 0.00 2.29
8244 12909 6.403878 GTTACCACCACAGACAGTAATACAT 58.596 40.000 0.00 0.00 0.00 2.29
8245 12910 5.086104 ACCACCACAGACAGTAATACATC 57.914 43.478 0.00 0.00 0.00 3.06
8246 12911 4.530553 ACCACCACAGACAGTAATACATCA 59.469 41.667 0.00 0.00 0.00 3.07
8247 12912 5.111989 CCACCACAGACAGTAATACATCAG 58.888 45.833 0.00 0.00 0.00 2.90
8248 12913 5.105351 CCACCACAGACAGTAATACATCAGA 60.105 44.000 0.00 0.00 0.00 3.27
8249 12914 6.407412 CCACCACAGACAGTAATACATCAGAT 60.407 42.308 0.00 0.00 0.00 2.90
8250 12915 6.699204 CACCACAGACAGTAATACATCAGATC 59.301 42.308 0.00 0.00 0.00 2.75
8251 12916 6.609212 ACCACAGACAGTAATACATCAGATCT 59.391 38.462 0.00 0.00 0.00 2.75
8252 12917 7.124901 ACCACAGACAGTAATACATCAGATCTT 59.875 37.037 0.00 0.00 0.00 2.40
8253 12918 8.633561 CCACAGACAGTAATACATCAGATCTTA 58.366 37.037 0.00 0.00 0.00 2.10
8254 12919 9.457110 CACAGACAGTAATACATCAGATCTTAC 57.543 37.037 0.00 0.00 0.00 2.34
8255 12920 9.190317 ACAGACAGTAATACATCAGATCTTACA 57.810 33.333 0.00 0.00 0.00 2.41
8256 12921 9.457110 CAGACAGTAATACATCAGATCTTACAC 57.543 37.037 0.00 0.00 0.00 2.90
8257 12922 9.415008 AGACAGTAATACATCAGATCTTACACT 57.585 33.333 0.00 0.00 0.00 3.55
8258 12923 9.672086 GACAGTAATACATCAGATCTTACACTC 57.328 37.037 0.00 0.00 0.00 3.51
8259 12924 9.415008 ACAGTAATACATCAGATCTTACACTCT 57.585 33.333 0.00 0.00 0.00 3.24
8267 12932 9.634021 ACATCAGATCTTACACTCTAGTTATGA 57.366 33.333 0.00 0.00 0.00 2.15
8278 12943 8.540507 ACACTCTAGTTATGATTATCCAGTGT 57.459 34.615 0.00 0.00 36.72 3.55
8279 12944 9.642343 ACACTCTAGTTATGATTATCCAGTGTA 57.358 33.333 0.00 0.00 39.10 2.90
8282 12947 9.915629 CTCTAGTTATGATTATCCAGTGTAACC 57.084 37.037 0.00 0.00 37.80 2.85
8283 12948 9.656323 TCTAGTTATGATTATCCAGTGTAACCT 57.344 33.333 0.00 0.00 37.80 3.50
8284 12949 9.698309 CTAGTTATGATTATCCAGTGTAACCTG 57.302 37.037 0.00 0.00 37.80 4.00
8292 12957 2.631160 CAGTGTAACCTGGAACCACA 57.369 50.000 0.00 0.00 37.80 4.17
8293 12958 2.925724 CAGTGTAACCTGGAACCACAA 58.074 47.619 0.00 0.00 37.80 3.33
8294 12959 2.878406 CAGTGTAACCTGGAACCACAAG 59.122 50.000 0.00 0.00 37.80 3.16
8295 12960 2.775384 AGTGTAACCTGGAACCACAAGA 59.225 45.455 0.00 0.00 37.80 3.02
8296 12961 2.876550 GTGTAACCTGGAACCACAAGAC 59.123 50.000 0.00 0.00 0.00 3.01
8297 12962 2.140717 GTAACCTGGAACCACAAGACG 58.859 52.381 0.00 0.00 0.00 4.18
8298 12963 0.179029 AACCTGGAACCACAAGACGG 60.179 55.000 0.00 0.00 0.00 4.79
8299 12964 1.342672 ACCTGGAACCACAAGACGGT 61.343 55.000 0.00 0.00 38.85 4.83
8301 12966 0.944386 CTGGAACCACAAGACGGTTG 59.056 55.000 0.00 0.00 46.80 3.77
8302 12967 0.464735 TGGAACCACAAGACGGTTGG 60.465 55.000 0.00 0.00 46.80 3.77
8303 12968 1.652563 GAACCACAAGACGGTTGGC 59.347 57.895 0.00 0.00 46.80 4.52
8304 12969 1.792118 GAACCACAAGACGGTTGGCC 61.792 60.000 0.00 0.00 46.80 5.36
8305 12970 2.113139 CCACAAGACGGTTGGCCT 59.887 61.111 3.32 0.00 0.00 5.19
8306 12971 1.373435 CCACAAGACGGTTGGCCTA 59.627 57.895 3.32 0.00 0.00 3.93
8307 12972 0.953960 CCACAAGACGGTTGGCCTAC 60.954 60.000 9.03 9.03 0.00 3.18
8308 12973 1.005394 ACAAGACGGTTGGCCTACG 60.005 57.895 11.31 11.54 0.00 3.51
8309 12974 2.047560 AAGACGGTTGGCCTACGC 60.048 61.111 11.31 3.74 0.00 4.42
8319 12984 2.983791 GCCTACGCCAACCTACCA 59.016 61.111 0.00 0.00 0.00 3.25
8320 12985 1.297364 GCCTACGCCAACCTACCAA 59.703 57.895 0.00 0.00 0.00 3.67
8321 12986 1.022982 GCCTACGCCAACCTACCAAC 61.023 60.000 0.00 0.00 0.00 3.77
8322 12987 0.392060 CCTACGCCAACCTACCAACC 60.392 60.000 0.00 0.00 0.00 3.77
8323 12988 0.322322 CTACGCCAACCTACCAACCA 59.678 55.000 0.00 0.00 0.00 3.67
8324 12989 0.763652 TACGCCAACCTACCAACCAA 59.236 50.000 0.00 0.00 0.00 3.67
8325 12990 0.111639 ACGCCAACCTACCAACCAAT 59.888 50.000 0.00 0.00 0.00 3.16
8326 12991 1.351683 ACGCCAACCTACCAACCAATA 59.648 47.619 0.00 0.00 0.00 1.90
8327 12992 2.224818 ACGCCAACCTACCAACCAATAA 60.225 45.455 0.00 0.00 0.00 1.40
8328 12993 2.820787 CGCCAACCTACCAACCAATAAA 59.179 45.455 0.00 0.00 0.00 1.40
8329 12994 3.366577 CGCCAACCTACCAACCAATAAAC 60.367 47.826 0.00 0.00 0.00 2.01
8330 12995 3.574826 GCCAACCTACCAACCAATAAACA 59.425 43.478 0.00 0.00 0.00 2.83
8331 12996 4.221924 GCCAACCTACCAACCAATAAACAT 59.778 41.667 0.00 0.00 0.00 2.71
8332 12997 5.719173 CCAACCTACCAACCAATAAACATG 58.281 41.667 0.00 0.00 0.00 3.21
8333 12998 5.245075 CCAACCTACCAACCAATAAACATGT 59.755 40.000 0.00 0.00 0.00 3.21
8334 12999 6.239458 CCAACCTACCAACCAATAAACATGTT 60.239 38.462 4.92 4.92 0.00 2.71
8335 13000 6.987403 ACCTACCAACCAATAAACATGTTT 57.013 33.333 25.99 25.99 36.63 2.83
8336 13001 7.368198 ACCTACCAACCAATAAACATGTTTT 57.632 32.000 27.66 13.43 34.23 2.43
8337 13002 7.213678 ACCTACCAACCAATAAACATGTTTTG 58.786 34.615 27.66 19.97 34.23 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.041440 CCCAAAACAAATCCATTTACCACTTTC 60.041 37.037 0.00 0.00 0.00 2.62
42 43 2.366569 GAGGTCTACCCCACCCCC 60.367 72.222 0.00 0.00 33.96 5.40
43 44 0.549413 AAAGAGGTCTACCCCACCCC 60.549 60.000 0.00 0.00 33.96 4.95
44 45 1.369403 AAAAGAGGTCTACCCCACCC 58.631 55.000 0.00 0.00 33.96 4.61
45 46 2.107726 ACAAAAAGAGGTCTACCCCACC 59.892 50.000 0.00 0.00 36.42 4.61
46 47 3.503800 ACAAAAAGAGGTCTACCCCAC 57.496 47.619 0.00 0.00 36.42 4.61
47 48 3.827722 CAACAAAAAGAGGTCTACCCCA 58.172 45.455 0.00 0.00 36.42 4.96
48 49 2.557056 GCAACAAAAAGAGGTCTACCCC 59.443 50.000 0.00 0.00 36.42 4.95
49 50 2.225727 CGCAACAAAAAGAGGTCTACCC 59.774 50.000 0.00 0.00 36.42 3.69
131 132 3.721035 AGCAACAAATCTCACTTTTGGC 58.279 40.909 0.00 0.00 38.18 4.52
137 138 2.417719 GGTCGAGCAACAAATCTCACT 58.582 47.619 10.30 0.00 0.00 3.41
173 174 0.798776 CTTTGCGTGGGCTCTTACTG 59.201 55.000 0.00 0.00 40.82 2.74
212 222 3.375299 CGGGCTTCTATTTCCAGACTTTG 59.625 47.826 0.00 0.00 0.00 2.77
216 226 2.981859 TCGGGCTTCTATTTCCAGAC 57.018 50.000 0.00 0.00 0.00 3.51
432 442 2.779755 AGACGGCACCATTTGACATA 57.220 45.000 0.00 0.00 28.81 2.29
466 476 2.969821 ATTACAAAGGCACTGGGTGA 57.030 45.000 1.57 0.00 40.86 4.02
471 481 5.940192 TGTCAGTTATTACAAAGGCACTG 57.060 39.130 0.00 0.00 40.86 3.66
500 510 0.311790 ACATGCAAGTGCTTCAACCG 59.688 50.000 4.69 0.00 42.66 4.44
518 528 1.763545 CCAGAGTTAGGCCTTCCCTAC 59.236 57.143 12.58 1.81 45.90 3.18
594 605 3.076621 TCATTGTTGCTGCTCTACCTTG 58.923 45.455 0.00 0.00 0.00 3.61
623 635 2.396590 TACGAGAACTTGGCCAATCC 57.603 50.000 20.85 11.05 0.00 3.01
628 640 3.127030 CCAAAGAATACGAGAACTTGGCC 59.873 47.826 0.00 0.00 0.00 5.36
681 694 3.131396 GTGGGATACGCAAGAATAGTGG 58.869 50.000 0.00 0.00 43.62 4.00
747 760 2.480587 GCGGTAACAAAGGCACTGTTTT 60.481 45.455 9.15 0.00 40.86 2.43
856 886 4.096382 CGGCTTTCATTTTAGGCACAGTAT 59.904 41.667 0.00 0.00 36.81 2.12
938 973 3.034635 AGATTGTGAGGCGGAGATTAGT 58.965 45.455 0.00 0.00 0.00 2.24
956 1025 3.392616 GAGACAGAGAGAGGGAGAGAGAT 59.607 52.174 0.00 0.00 0.00 2.75
985 1076 2.124403 CATGGCTCAGCTCACCCC 60.124 66.667 0.00 0.00 0.00 4.95
986 1077 2.124403 CCATGGCTCAGCTCACCC 60.124 66.667 0.00 0.00 0.00 4.61
1233 1338 1.918868 GCAAAAGGACTTACGCCGGG 61.919 60.000 2.18 0.00 0.00 5.73
1388 1502 1.212616 GAATCTGTGGATTCGGCTCG 58.787 55.000 3.49 0.00 45.30 5.03
1397 1511 0.034756 CCGTGTGTGGAATCTGTGGA 59.965 55.000 0.00 0.00 0.00 4.02
1398 1512 1.577328 GCCGTGTGTGGAATCTGTGG 61.577 60.000 0.00 0.00 0.00 4.17
1399 1513 0.884259 TGCCGTGTGTGGAATCTGTG 60.884 55.000 0.00 0.00 0.00 3.66
1400 1514 0.603707 CTGCCGTGTGTGGAATCTGT 60.604 55.000 0.00 0.00 0.00 3.41
1401 1515 1.915614 GCTGCCGTGTGTGGAATCTG 61.916 60.000 0.00 0.00 0.00 2.90
1402 1516 1.672356 GCTGCCGTGTGTGGAATCT 60.672 57.895 0.00 0.00 0.00 2.40
1403 1517 1.672356 AGCTGCCGTGTGTGGAATC 60.672 57.895 0.00 0.00 0.00 2.52
1404 1518 1.968017 CAGCTGCCGTGTGTGGAAT 60.968 57.895 0.00 0.00 0.00 3.01
1405 1519 2.591429 CAGCTGCCGTGTGTGGAA 60.591 61.111 0.00 0.00 0.00 3.53
1475 1592 1.660575 GACACAGACACCGACACCG 60.661 63.158 0.00 0.00 0.00 4.94
1476 1593 1.660575 CGACACAGACACCGACACC 60.661 63.158 0.00 0.00 0.00 4.16
1477 1594 0.248743 TTCGACACAGACACCGACAC 60.249 55.000 0.00 0.00 0.00 3.67
1478 1595 0.030235 CTTCGACACAGACACCGACA 59.970 55.000 0.00 0.00 0.00 4.35
1479 1596 1.276145 GCTTCGACACAGACACCGAC 61.276 60.000 0.00 0.00 0.00 4.79
1480 1597 1.007734 GCTTCGACACAGACACCGA 60.008 57.895 0.00 0.00 0.00 4.69
1488 1605 2.649034 GGACTCCGCTTCGACACA 59.351 61.111 0.00 0.00 0.00 3.72
1507 1624 3.655211 CCCTTCCACCAGCCAGCT 61.655 66.667 0.00 0.00 0.00 4.24
1515 1632 2.046217 GAGAACCGCCCTTCCACC 60.046 66.667 0.00 0.00 0.00 4.61
1597 1714 0.179145 CGTGTCCGATACCACAGTCC 60.179 60.000 0.00 0.00 35.63 3.85
1606 1723 4.541482 GCGCCGTCGTGTCCGATA 62.541 66.667 0.00 0.00 46.30 2.92
1625 1742 1.303643 CACCTCCTCCAAACCAGCC 60.304 63.158 0.00 0.00 0.00 4.85
1683 1815 0.036952 ACGCCAGTGTCAGAATCCTG 60.037 55.000 0.00 0.00 41.74 3.86
1684 1816 0.036952 CACGCCAGTGTCAGAATCCT 60.037 55.000 0.00 0.00 43.15 3.24
1685 1817 1.021390 CCACGCCAGTGTCAGAATCC 61.021 60.000 0.00 0.00 46.56 3.01
1686 1818 0.037326 TCCACGCCAGTGTCAGAATC 60.037 55.000 0.00 0.00 46.56 2.52
1687 1819 0.615331 ATCCACGCCAGTGTCAGAAT 59.385 50.000 0.00 0.00 46.56 2.40
1688 1820 0.320683 CATCCACGCCAGTGTCAGAA 60.321 55.000 0.00 0.00 46.56 3.02
1689 1821 1.293179 CATCCACGCCAGTGTCAGA 59.707 57.895 0.00 0.00 46.56 3.27
1690 1822 2.393768 GCATCCACGCCAGTGTCAG 61.394 63.158 0.00 0.00 46.56 3.51
1691 1823 2.358615 GCATCCACGCCAGTGTCA 60.359 61.111 0.00 0.00 46.56 3.58
1692 1824 2.358615 TGCATCCACGCCAGTGTC 60.359 61.111 0.00 0.00 46.56 3.67
1693 1825 2.359107 CTGCATCCACGCCAGTGT 60.359 61.111 0.00 0.00 46.56 3.55
1695 1827 2.267006 CTCTGCATCCACGCCAGT 59.733 61.111 0.00 0.00 0.00 4.00
1696 1828 1.812922 GACTCTGCATCCACGCCAG 60.813 63.158 0.00 0.00 0.00 4.85
1697 1829 0.970427 TAGACTCTGCATCCACGCCA 60.970 55.000 0.00 0.00 0.00 5.69
1746 1878 2.305927 CTGTTGGTGGGATGGTAACTCT 59.694 50.000 0.00 0.00 37.61 3.24
1764 1896 0.249398 GGAGGAACACATACCGCTGT 59.751 55.000 0.00 0.00 0.00 4.40
1785 1917 6.316640 AGAGAGAAATTGTCTGATTGAGCATG 59.683 38.462 0.00 0.00 36.41 4.06
1786 1918 6.416415 AGAGAGAAATTGTCTGATTGAGCAT 58.584 36.000 0.00 0.00 36.41 3.79
1795 1927 8.229137 GTGAAGAAATCAGAGAGAAATTGTCTG 58.771 37.037 0.00 0.00 45.97 3.51
1798 1930 8.566260 CAAGTGAAGAAATCAGAGAGAAATTGT 58.434 33.333 0.00 0.00 39.19 2.71
1819 1951 7.708051 ACACTATCTATAGTACACAGCAAGTG 58.292 38.462 7.66 7.66 46.25 3.16
1833 1965 7.014615 TGCAGCATCTCTGAAACACTATCTATA 59.985 37.037 0.00 0.00 45.72 1.31
1879 2125 7.714377 CAGACCTAGATGAGCTGATTAACAATT 59.286 37.037 0.00 0.00 0.00 2.32
1889 2135 4.642437 TGAACTACAGACCTAGATGAGCTG 59.358 45.833 0.00 0.00 0.00 4.24
1903 2149 4.245660 ACGACCATGAATGTGAACTACAG 58.754 43.478 0.00 0.00 43.80 2.74
1995 2241 4.755123 AGAAAACCAGGAGTATGTTCAACG 59.245 41.667 0.00 0.00 0.00 4.10
2002 2248 3.372206 CGAAGCAGAAAACCAGGAGTATG 59.628 47.826 0.00 0.00 0.00 2.39
2020 2266 0.526211 TGGTCCGTGATCACTCGAAG 59.474 55.000 22.95 7.44 35.44 3.79
2059 2306 9.936759 ATAAACATAAAAGGGTATGGTTTGTTG 57.063 29.630 1.16 0.00 38.02 3.33
2225 2473 5.474189 CCCTGAGGCAGTAGTACTATAAGAC 59.526 48.000 5.75 1.55 0.00 3.01
2260 2508 1.140252 ACGCGATGGGCCTTAAATACT 59.860 47.619 15.93 0.00 38.94 2.12
2279 2527 8.810652 TTAATGCTGAAAGTTTGACCAATAAC 57.189 30.769 0.00 0.00 35.30 1.89
2329 2579 8.925161 TTCTAATGGTATGCTTTTTGTTATGC 57.075 30.769 0.00 0.00 0.00 3.14
2408 2658 7.308589 CCCCTCATATTTTGGATAAAACTAGCG 60.309 40.741 0.00 0.00 38.50 4.26
2448 2718 6.434340 TGATTTCTTAGAAAGGCCCTCTTTTC 59.566 38.462 13.07 8.49 45.00 2.29
2458 2728 8.703604 TCTCGTATGTTGATTTCTTAGAAAGG 57.296 34.615 13.07 0.00 0.00 3.11
2461 2731 9.967346 CCTATCTCGTATGTTGATTTCTTAGAA 57.033 33.333 0.00 0.00 0.00 2.10
2462 2732 9.132923 ACCTATCTCGTATGTTGATTTCTTAGA 57.867 33.333 0.00 0.00 0.00 2.10
2551 2835 4.422712 GACATGGTCAAGGACATGTCCAC 61.423 52.174 39.38 29.58 40.47 4.02
2640 2924 4.591498 TCACTTCAACTGGTACTGGTATGT 59.409 41.667 0.00 0.00 0.00 2.29
2724 3008 3.430218 CCAGAAGTAAACGTCTTGCTCAG 59.570 47.826 0.00 0.00 32.46 3.35
2735 3019 1.663161 GCGCACAAGCCAGAAGTAAAC 60.663 52.381 0.30 0.00 37.52 2.01
2737 3021 1.565156 CGCGCACAAGCCAGAAGTAA 61.565 55.000 8.75 0.00 37.52 2.24
2753 3037 6.142480 CCAATTCATAGAGTAAGTTCTACGCG 59.858 42.308 3.53 3.53 32.78 6.01
2766 3050 7.823310 CCACCAAGAGATATCCAATTCATAGAG 59.177 40.741 0.00 0.00 0.00 2.43
2767 3051 7.293299 ACCACCAAGAGATATCCAATTCATAGA 59.707 37.037 0.00 0.00 0.00 1.98
2777 3061 6.426646 ACTGAATACCACCAAGAGATATCC 57.573 41.667 0.00 0.00 0.00 2.59
2781 3065 4.536090 TCCAACTGAATACCACCAAGAGAT 59.464 41.667 0.00 0.00 0.00 2.75
2828 3112 4.321974 CCCTATTGTGGAAAAAGGAGCAAC 60.322 45.833 0.00 0.00 0.00 4.17
2874 3158 4.855340 ACTTCTGAAGTGTTCTTTTCCCA 58.145 39.130 21.47 0.00 41.01 4.37
2944 3228 7.812669 CCACCTATGGTTTGAAAACTGAAATAC 59.187 37.037 5.93 0.00 41.64 1.89
2974 3258 2.353889 CGGAAAAGATGATGCTGACCAG 59.646 50.000 0.00 0.00 0.00 4.00
2976 3260 2.359900 ACGGAAAAGATGATGCTGACC 58.640 47.619 0.00 0.00 0.00 4.02
2977 3261 6.844696 TTATACGGAAAAGATGATGCTGAC 57.155 37.500 0.00 0.00 0.00 3.51
2978 3262 6.366061 CGATTATACGGAAAAGATGATGCTGA 59.634 38.462 0.00 0.00 0.00 4.26
2979 3263 6.528826 CGATTATACGGAAAAGATGATGCTG 58.471 40.000 0.00 0.00 0.00 4.41
2980 3264 5.120830 GCGATTATACGGAAAAGATGATGCT 59.879 40.000 0.00 0.00 0.00 3.79
2981 3265 5.120830 AGCGATTATACGGAAAAGATGATGC 59.879 40.000 0.00 0.00 0.00 3.91
2982 3266 6.146184 ACAGCGATTATACGGAAAAGATGATG 59.854 38.462 0.00 0.00 0.00 3.07
3003 3287 0.524862 AAGCAATAGCAGCACACAGC 59.475 50.000 0.00 0.00 45.49 4.40
3004 3288 1.731424 GCAAGCAATAGCAGCACACAG 60.731 52.381 0.00 0.00 45.49 3.66
3006 3290 0.795735 CGCAAGCAATAGCAGCACAC 60.796 55.000 0.00 0.00 45.49 3.82
3019 3303 1.857602 GCCGAATTCATCTTCGCAAGC 60.858 52.381 6.22 0.00 45.07 4.01
3082 3370 5.373812 ACAGTAAAAGCCATAGCATAGGT 57.626 39.130 0.00 0.00 43.56 3.08
3083 3371 7.986085 AATACAGTAAAAGCCATAGCATAGG 57.014 36.000 0.00 0.00 43.56 2.57
3087 3375 9.238368 AGTTTAAATACAGTAAAAGCCATAGCA 57.762 29.630 0.00 0.00 43.56 3.49
3139 3427 9.012161 TGAACATTGAACATGACAGAATGATTA 57.988 29.630 0.00 0.00 39.69 1.75
3140 3428 7.888424 TGAACATTGAACATGACAGAATGATT 58.112 30.769 0.00 0.78 39.69 2.57
3152 3441 7.334421 GCCGTCCTATATATGAACATTGAACAT 59.666 37.037 0.00 0.00 0.00 2.71
3161 3450 4.463186 ACTGGAGCCGTCCTATATATGAAC 59.537 45.833 0.00 0.00 44.30 3.18
3178 3467 0.031857 CGCTGATGAGGCTACTGGAG 59.968 60.000 0.00 0.00 0.00 3.86
3195 3484 0.657368 CCTGACGTCAACAAAAGCGC 60.657 55.000 20.49 0.00 0.00 5.92
3259 3548 2.100252 CAGCCATTCGGAAAATGCAGAT 59.900 45.455 10.68 0.00 0.00 2.90
3271 3560 5.551760 AGTGAAATTACTTCAGCCATTCG 57.448 39.130 0.00 0.00 44.83 3.34
3272 3561 9.508567 GAATAAGTGAAATTACTTCAGCCATTC 57.491 33.333 0.00 0.00 44.83 2.67
3468 4213 3.337358 TGGTAGCATTGACTGACACATG 58.663 45.455 0.00 0.00 0.00 3.21
3526 4271 2.808543 CGGGAGCTTGGAATAGCATTAC 59.191 50.000 0.00 0.00 43.68 1.89
3622 4367 2.482839 CCACACCAAACCAACCATTGTC 60.483 50.000 0.00 0.00 0.00 3.18
3685 4430 9.750125 ACTACAGAATCAAAACCAAAGAAAATC 57.250 29.630 0.00 0.00 0.00 2.17
3734 4479 3.010250 GGGGAATTTGGTGTCTAGAAGGT 59.990 47.826 0.00 0.00 0.00 3.50
3976 4725 7.309621 GGTGCAGAATTATATGGATTGAGCATT 60.310 37.037 0.00 0.00 30.60 3.56
4072 4821 7.674471 AGAGAGGAATGTTGCTAAAGTTAAC 57.326 36.000 0.00 0.00 0.00 2.01
4096 4846 1.271926 GCTCCCACTTTTCAGGGCTTA 60.272 52.381 0.00 0.00 45.07 3.09
4128 4878 1.438651 GGATCGCTTGCTGTTGTACA 58.561 50.000 0.00 0.00 0.00 2.90
4198 4951 4.088634 TGAAAATGAGTGAAGGGATTGGG 58.911 43.478 0.00 0.00 0.00 4.12
4254 5008 2.357009 GCCTGCTGACATGAACCATTAG 59.643 50.000 0.00 0.00 0.00 1.73
4260 5014 3.308438 AATTTGCCTGCTGACATGAAC 57.692 42.857 0.00 0.00 0.00 3.18
4310 5064 3.776969 AGAGATGGAGCATGGTTAACTGA 59.223 43.478 5.42 0.00 0.00 3.41
4311 5065 4.148128 AGAGATGGAGCATGGTTAACTG 57.852 45.455 5.42 0.00 0.00 3.16
4357 5195 4.775780 TCTTTCTACTGGCTAAGCAAGGTA 59.224 41.667 0.00 0.00 33.11 3.08
4400 5255 9.742552 GAAGTAACGATCAGTCAATAACTTTTC 57.257 33.333 0.00 0.00 35.45 2.29
4420 5275 6.269077 TGAACATCCACAGAAGGTAGAAGTAA 59.731 38.462 0.00 0.00 0.00 2.24
5196 8697 3.938963 CCTTGCGTTCTTTATAGCCAAGA 59.061 43.478 0.00 0.00 0.00 3.02
5619 9978 2.480073 CGGATGCAAACCAGGCTAAATG 60.480 50.000 12.59 0.00 0.00 2.32
5704 10068 6.414732 TCAATGGTCATTGTCTAACCCTTAG 58.585 40.000 19.31 0.00 46.15 2.18
5812 10176 9.383519 CAAAATAATAAGAGGTAAGAGCACTCA 57.616 33.333 0.00 0.00 33.76 3.41
5966 10330 2.757868 CAATCTACATCCCCCGCAAAAA 59.242 45.455 0.00 0.00 0.00 1.94
5967 10331 2.025793 TCAATCTACATCCCCCGCAAAA 60.026 45.455 0.00 0.00 0.00 2.44
5968 10332 1.562008 TCAATCTACATCCCCCGCAAA 59.438 47.619 0.00 0.00 0.00 3.68
5969 10333 1.134220 GTCAATCTACATCCCCCGCAA 60.134 52.381 0.00 0.00 0.00 4.85
5970 10334 0.468226 GTCAATCTACATCCCCCGCA 59.532 55.000 0.00 0.00 0.00 5.69
5971 10335 0.468226 TGTCAATCTACATCCCCCGC 59.532 55.000 0.00 0.00 0.00 6.13
5972 10336 2.170607 ACTTGTCAATCTACATCCCCCG 59.829 50.000 0.00 0.00 0.00 5.73
5973 10337 3.933861 ACTTGTCAATCTACATCCCCC 57.066 47.619 0.00 0.00 0.00 5.40
5974 10338 4.843728 TCAACTTGTCAATCTACATCCCC 58.156 43.478 0.00 0.00 0.00 4.81
5975 10339 6.206634 TGTTTCAACTTGTCAATCTACATCCC 59.793 38.462 0.00 0.00 0.00 3.85
5976 10340 7.173218 TCTGTTTCAACTTGTCAATCTACATCC 59.827 37.037 0.00 0.00 0.00 3.51
5977 10341 8.087982 TCTGTTTCAACTTGTCAATCTACATC 57.912 34.615 0.00 0.00 0.00 3.06
5978 10342 8.450578 TTCTGTTTCAACTTGTCAATCTACAT 57.549 30.769 0.00 0.00 0.00 2.29
5979 10343 7.857734 TTCTGTTTCAACTTGTCAATCTACA 57.142 32.000 0.00 0.00 0.00 2.74
5980 10344 9.567848 TTTTTCTGTTTCAACTTGTCAATCTAC 57.432 29.630 0.00 0.00 0.00 2.59
5981 10345 9.787532 CTTTTTCTGTTTCAACTTGTCAATCTA 57.212 29.630 0.00 0.00 0.00 1.98
5982 10346 8.306761 ACTTTTTCTGTTTCAACTTGTCAATCT 58.693 29.630 0.00 0.00 0.00 2.40
5983 10347 8.466086 ACTTTTTCTGTTTCAACTTGTCAATC 57.534 30.769 0.00 0.00 0.00 2.67
5984 10348 9.573133 CTACTTTTTCTGTTTCAACTTGTCAAT 57.427 29.630 0.00 0.00 0.00 2.57
5985 10349 8.788806 TCTACTTTTTCTGTTTCAACTTGTCAA 58.211 29.630 0.00 0.00 0.00 3.18
5986 10350 8.330466 TCTACTTTTTCTGTTTCAACTTGTCA 57.670 30.769 0.00 0.00 0.00 3.58
5987 10351 9.620660 TTTCTACTTTTTCTGTTTCAACTTGTC 57.379 29.630 0.00 0.00 0.00 3.18
5988 10352 9.974980 TTTTCTACTTTTTCTGTTTCAACTTGT 57.025 25.926 0.00 0.00 0.00 3.16
5991 10355 9.626045 CAGTTTTCTACTTTTTCTGTTTCAACT 57.374 29.630 0.00 0.00 33.85 3.16
5992 10356 8.373256 GCAGTTTTCTACTTTTTCTGTTTCAAC 58.627 33.333 0.00 0.00 33.85 3.18
5993 10357 8.085296 TGCAGTTTTCTACTTTTTCTGTTTCAA 58.915 29.630 0.00 0.00 33.85 2.69
5994 10358 7.598278 TGCAGTTTTCTACTTTTTCTGTTTCA 58.402 30.769 0.00 0.00 33.85 2.69
6016 10380 1.326328 CTCATCTCTCGGATCCTGCA 58.674 55.000 10.75 0.00 31.27 4.41
6025 10389 9.689976 ACATCTTAAATCAATACTCATCTCTCG 57.310 33.333 0.00 0.00 0.00 4.04
6072 10436 1.568504 TGGCTGGGAGTAGGTACAAG 58.431 55.000 0.00 0.00 0.00 3.16
6079 10443 2.586648 AAACCTTTGGCTGGGAGTAG 57.413 50.000 0.00 0.00 0.00 2.57
6156 10520 8.270137 TGGCATTTAGGAACTAGGACATTATA 57.730 34.615 0.00 0.00 44.25 0.98
6157 10521 7.149202 TGGCATTTAGGAACTAGGACATTAT 57.851 36.000 0.00 0.00 44.25 1.28
6168 10532 2.562738 ACAAAGGCTGGCATTTAGGAAC 59.437 45.455 3.38 0.00 0.00 3.62
6203 10567 3.818961 AAATTGTCTGCACGTCTCATG 57.181 42.857 0.00 0.00 0.00 3.07
6204 10568 4.067896 AGAAAATTGTCTGCACGTCTCAT 58.932 39.130 0.00 0.00 0.00 2.90
6205 10569 3.466836 AGAAAATTGTCTGCACGTCTCA 58.533 40.909 0.00 0.00 0.00 3.27
6206 10570 4.212214 AGAAGAAAATTGTCTGCACGTCTC 59.788 41.667 6.38 0.00 0.00 3.36
6208 10572 4.474226 AGAAGAAAATTGTCTGCACGTC 57.526 40.909 6.38 0.00 0.00 4.34
6209 10573 4.335315 TCAAGAAGAAAATTGTCTGCACGT 59.665 37.500 6.38 0.00 0.00 4.49
6211 10575 6.064846 TCTCAAGAAGAAAATTGTCTGCAC 57.935 37.500 6.38 0.00 0.00 4.57
6212 10576 6.263842 ACATCTCAAGAAGAAAATTGTCTGCA 59.736 34.615 6.38 0.00 37.61 4.41
6239 10603 3.496160 GCCCTAACTTGAAGTCTGGAACA 60.496 47.826 15.19 0.00 0.00 3.18
6240 10604 3.075148 GCCCTAACTTGAAGTCTGGAAC 58.925 50.000 15.19 6.16 0.00 3.62
6241 10605 2.289444 CGCCCTAACTTGAAGTCTGGAA 60.289 50.000 15.19 0.00 0.00 3.53
6243 10607 1.726853 CGCCCTAACTTGAAGTCTGG 58.273 55.000 0.00 3.99 0.00 3.86
6268 10633 7.094549 GCCAACAGTACAAACCTATATTGACAA 60.095 37.037 0.00 0.00 0.00 3.18
6394 10761 8.387354 TGAAATTACGAATAACTATGTGCACTG 58.613 33.333 19.41 10.66 0.00 3.66
6404 10771 7.308589 GGCATGCCTATGAAATTACGAATAACT 60.309 37.037 29.98 0.00 36.36 2.24
6409 10776 4.036262 GTGGCATGCCTATGAAATTACGAA 59.964 41.667 35.53 8.95 36.36 3.85
6410 10777 3.563808 GTGGCATGCCTATGAAATTACGA 59.436 43.478 35.53 9.43 36.36 3.43
6411 10778 3.314913 TGTGGCATGCCTATGAAATTACG 59.685 43.478 35.53 0.00 36.36 3.18
6412 10779 4.339247 ACTGTGGCATGCCTATGAAATTAC 59.661 41.667 35.53 22.21 36.36 1.89
6413 10780 4.338964 CACTGTGGCATGCCTATGAAATTA 59.661 41.667 35.53 11.01 36.36 1.40
6414 10781 3.131577 CACTGTGGCATGCCTATGAAATT 59.868 43.478 35.53 10.43 36.36 1.82
6415 10782 2.691526 CACTGTGGCATGCCTATGAAAT 59.308 45.455 35.53 13.16 36.36 2.17
6416 10783 2.093890 CACTGTGGCATGCCTATGAAA 58.906 47.619 35.53 13.42 36.36 2.69
6517 10884 3.078837 TCCTTCACTTTCCGCAATTACC 58.921 45.455 0.00 0.00 0.00 2.85
6551 10918 1.357991 GAGAGAACTTGCTCAGGCGC 61.358 60.000 0.00 0.00 42.25 6.53
6553 10920 0.322975 TGGAGAGAACTTGCTCAGGC 59.677 55.000 0.00 0.00 37.37 4.85
6556 10923 1.271054 GCCTTGGAGAGAACTTGCTCA 60.271 52.381 0.00 0.00 37.37 4.26
6592 10959 1.889829 ACAGTCGAAGAACCAGGAGAG 59.110 52.381 0.00 0.00 39.69 3.20
6645 11012 1.062587 CTGCGGCGGTCTTGATAAAAG 59.937 52.381 9.78 0.00 0.00 2.27
6660 11027 4.003648 ACAAGGAGAAATAAGAACTGCGG 58.996 43.478 0.00 0.00 0.00 5.69
6662 11029 5.470098 TGACACAAGGAGAAATAAGAACTGC 59.530 40.000 0.00 0.00 0.00 4.40
6680 11047 7.669089 TGATAGGTCCAATAAGTATGACACA 57.331 36.000 0.00 0.00 0.00 3.72
6774 11145 2.547211 CCATTGGTTTTGATTTTGCGCA 59.453 40.909 5.66 5.66 0.00 6.09
6775 11146 2.547634 ACCATTGGTTTTGATTTTGCGC 59.452 40.909 1.37 0.00 27.29 6.09
6976 11347 3.515630 CATCGGTCGCTGCTATAATGAT 58.484 45.455 0.00 0.00 0.00 2.45
7027 11398 0.471191 TTCGAGATCATGGCTGCCAT 59.529 50.000 27.95 27.95 46.37 4.40
7028 11399 0.252761 TTTCGAGATCATGGCTGCCA 59.747 50.000 25.65 25.65 38.19 4.92
7068 11439 1.599542 GTTGATGAATCTACCGCTGGC 59.400 52.381 0.00 0.00 0.00 4.85
7107 11478 5.024785 AGACCGAGATTCAGGGTATTTTC 57.975 43.478 0.00 0.00 33.28 2.29
7147 11518 1.861575 GCAAGTAGAATAGTCAGGCGC 59.138 52.381 0.00 0.00 0.00 6.53
7165 11536 4.166888 GCTCGGCCATCTCCTGCA 62.167 66.667 2.24 0.00 0.00 4.41
7208 11579 3.086600 CCTGCTCCAGACCTCCCC 61.087 72.222 0.00 0.00 32.44 4.81
7336 11707 0.542232 TCGGGGGCCTTCTATAGCTC 60.542 60.000 0.84 0.00 0.00 4.09
7341 11712 1.766461 CACCTCGGGGGCCTTCTAT 60.766 63.158 6.13 0.00 39.10 1.98
7399 11773 3.338249 ACTACTGATGCAACGCTTTCAT 58.662 40.909 0.00 0.00 0.00 2.57
7400 11774 2.766313 ACTACTGATGCAACGCTTTCA 58.234 42.857 0.00 0.00 0.00 2.69
7406 11780 4.449068 AGTTTCTGAACTACTGATGCAACG 59.551 41.667 0.00 0.00 44.13 4.10
7428 11802 0.654472 GAACTTTGCACGTGTCGCAG 60.654 55.000 18.38 10.58 41.18 5.18
7433 11807 1.817941 AGGCGAACTTTGCACGTGT 60.818 52.632 18.38 0.00 0.00 4.49
7434 11808 1.369209 CAGGCGAACTTTGCACGTG 60.369 57.895 12.28 12.28 0.00 4.49
7437 11811 0.941542 TACACAGGCGAACTTTGCAC 59.058 50.000 3.35 0.00 29.81 4.57
7438 11812 1.669604 TTACACAGGCGAACTTTGCA 58.330 45.000 3.35 0.00 29.81 4.08
7452 11846 8.139989 TGGTTCTTGAACTAGACTACTTTACAC 58.860 37.037 12.44 0.00 0.00 2.90
7456 11850 7.120923 TGTGGTTCTTGAACTAGACTACTTT 57.879 36.000 12.44 0.00 0.00 2.66
7467 11861 2.293399 AGGCGAATTGTGGTTCTTGAAC 59.707 45.455 5.03 5.03 0.00 3.18
7476 11870 4.693283 TCACTTAGATAGGCGAATTGTGG 58.307 43.478 0.00 0.00 0.00 4.17
7500 11955 7.440856 CAGCACCAACACCAAACTTAAATTTAT 59.559 33.333 0.00 0.00 0.00 1.40
7509 11964 0.817013 CACAGCACCAACACCAAACT 59.183 50.000 0.00 0.00 0.00 2.66
7524 11979 4.320608 ACAGCCCAAAATTTACACACAG 57.679 40.909 0.00 0.00 0.00 3.66
7563 12019 7.867403 ACGATTCAAGAGCACAAAATTACATTT 59.133 29.630 0.00 0.00 0.00 2.32
7564 12020 7.326789 CACGATTCAAGAGCACAAAATTACATT 59.673 33.333 0.00 0.00 0.00 2.71
7565 12021 6.803320 CACGATTCAAGAGCACAAAATTACAT 59.197 34.615 0.00 0.00 0.00 2.29
7566 12022 6.017523 TCACGATTCAAGAGCACAAAATTACA 60.018 34.615 0.00 0.00 0.00 2.41
7567 12023 6.370593 TCACGATTCAAGAGCACAAAATTAC 58.629 36.000 0.00 0.00 0.00 1.89
7568 12024 6.348458 CCTCACGATTCAAGAGCACAAAATTA 60.348 38.462 0.00 0.00 0.00 1.40
7569 12025 5.437289 TCACGATTCAAGAGCACAAAATT 57.563 34.783 0.00 0.00 0.00 1.82
7570 12026 4.083110 CCTCACGATTCAAGAGCACAAAAT 60.083 41.667 0.00 0.00 0.00 1.82
7571 12027 3.250762 CCTCACGATTCAAGAGCACAAAA 59.749 43.478 0.00 0.00 0.00 2.44
7572 12028 2.807967 CCTCACGATTCAAGAGCACAAA 59.192 45.455 0.00 0.00 0.00 2.83
7573 12029 2.037121 TCCTCACGATTCAAGAGCACAA 59.963 45.455 0.00 0.00 0.00 3.33
7574 12030 1.618343 TCCTCACGATTCAAGAGCACA 59.382 47.619 0.00 0.00 0.00 4.57
7575 12031 2.370281 TCCTCACGATTCAAGAGCAC 57.630 50.000 0.00 0.00 0.00 4.40
7576 12032 2.300152 ACTTCCTCACGATTCAAGAGCA 59.700 45.455 0.00 0.00 0.00 4.26
7577 12033 2.670414 CACTTCCTCACGATTCAAGAGC 59.330 50.000 0.00 0.00 0.00 4.09
7578 12034 3.257393 CCACTTCCTCACGATTCAAGAG 58.743 50.000 0.00 0.00 0.00 2.85
7579 12035 2.632996 ACCACTTCCTCACGATTCAAGA 59.367 45.455 0.00 0.00 0.00 3.02
7580 12036 3.045601 ACCACTTCCTCACGATTCAAG 57.954 47.619 0.00 0.00 0.00 3.02
7581 12037 3.056107 CCTACCACTTCCTCACGATTCAA 60.056 47.826 0.00 0.00 0.00 2.69
7582 12038 2.496070 CCTACCACTTCCTCACGATTCA 59.504 50.000 0.00 0.00 0.00 2.57
7583 12039 2.758979 TCCTACCACTTCCTCACGATTC 59.241 50.000 0.00 0.00 0.00 2.52
7584 12040 2.816411 TCCTACCACTTCCTCACGATT 58.184 47.619 0.00 0.00 0.00 3.34
7585 12041 2.526888 TCCTACCACTTCCTCACGAT 57.473 50.000 0.00 0.00 0.00 3.73
7586 12042 2.168496 CTTCCTACCACTTCCTCACGA 58.832 52.381 0.00 0.00 0.00 4.35
7587 12043 1.204941 CCTTCCTACCACTTCCTCACG 59.795 57.143 0.00 0.00 0.00 4.35
7588 12044 2.537143 TCCTTCCTACCACTTCCTCAC 58.463 52.381 0.00 0.00 0.00 3.51
7589 12045 2.904434 GTTCCTTCCTACCACTTCCTCA 59.096 50.000 0.00 0.00 0.00 3.86
7590 12046 2.236644 GGTTCCTTCCTACCACTTCCTC 59.763 54.545 0.00 0.00 34.48 3.71
7591 12047 2.267192 GGTTCCTTCCTACCACTTCCT 58.733 52.381 0.00 0.00 34.48 3.36
7592 12048 1.982958 TGGTTCCTTCCTACCACTTCC 59.017 52.381 0.00 0.00 39.44 3.46
7593 12049 3.676093 CTTGGTTCCTTCCTACCACTTC 58.324 50.000 0.00 0.00 43.80 3.01
7594 12050 2.224793 GCTTGGTTCCTTCCTACCACTT 60.225 50.000 0.00 0.00 43.80 3.16
7595 12051 1.351350 GCTTGGTTCCTTCCTACCACT 59.649 52.381 0.00 0.00 43.80 4.00
7596 12052 1.613520 GGCTTGGTTCCTTCCTACCAC 60.614 57.143 0.00 0.00 43.80 4.16
7597 12053 0.696501 GGCTTGGTTCCTTCCTACCA 59.303 55.000 0.00 0.00 42.48 3.25
7598 12054 0.696501 TGGCTTGGTTCCTTCCTACC 59.303 55.000 0.00 0.00 34.93 3.18
7599 12055 2.239907 AGATGGCTTGGTTCCTTCCTAC 59.760 50.000 0.00 0.00 0.00 3.18
7600 12056 2.562296 AGATGGCTTGGTTCCTTCCTA 58.438 47.619 0.00 0.00 0.00 2.94
7601 12057 1.376649 AGATGGCTTGGTTCCTTCCT 58.623 50.000 0.00 0.00 0.00 3.36
7602 12058 2.239907 ACTAGATGGCTTGGTTCCTTCC 59.760 50.000 0.00 0.00 0.00 3.46
7603 12059 3.055094 TGACTAGATGGCTTGGTTCCTTC 60.055 47.826 0.00 0.00 0.00 3.46
7604 12060 2.912956 TGACTAGATGGCTTGGTTCCTT 59.087 45.455 0.00 0.00 0.00 3.36
7605 12061 2.551270 TGACTAGATGGCTTGGTTCCT 58.449 47.619 0.00 0.00 0.00 3.36
7606 12062 3.350219 TTGACTAGATGGCTTGGTTCC 57.650 47.619 0.00 0.00 0.00 3.62
7607 12063 4.327680 ACTTTGACTAGATGGCTTGGTTC 58.672 43.478 0.00 0.00 0.00 3.62
7608 12064 4.373156 ACTTTGACTAGATGGCTTGGTT 57.627 40.909 0.00 0.00 0.00 3.67
7609 12065 4.074970 CAACTTTGACTAGATGGCTTGGT 58.925 43.478 0.00 0.00 0.00 3.67
7610 12066 4.326826 TCAACTTTGACTAGATGGCTTGG 58.673 43.478 0.00 0.00 31.01 3.61
7611 12067 5.947228 TTCAACTTTGACTAGATGGCTTG 57.053 39.130 0.00 0.00 36.83 4.01
7612 12068 8.814038 ATATTTCAACTTTGACTAGATGGCTT 57.186 30.769 0.00 0.00 36.83 4.35
7613 12069 9.905713 TTATATTTCAACTTTGACTAGATGGCT 57.094 29.630 0.00 0.00 36.83 4.75
7638 12094 9.926158 TGAATGTTACAGTTTAAATGCATGATT 57.074 25.926 0.00 0.00 0.00 2.57
7640 12096 9.356433 CATGAATGTTACAGTTTAAATGCATGA 57.644 29.630 0.00 0.00 31.25 3.07
7641 12097 9.356433 TCATGAATGTTACAGTTTAAATGCATG 57.644 29.630 0.00 0.00 0.00 4.06
7642 12098 9.577110 CTCATGAATGTTACAGTTTAAATGCAT 57.423 29.630 0.00 0.00 0.00 3.96
7650 12106 6.183360 TGTGTTGCTCATGAATGTTACAGTTT 60.183 34.615 0.00 0.00 0.00 2.66
7665 12121 2.470983 TTCCGATCATGTGTTGCTCA 57.529 45.000 0.00 0.00 0.00 4.26
7668 12124 3.129287 AGGAATTTCCGATCATGTGTTGC 59.871 43.478 9.77 0.00 42.75 4.17
7672 12128 2.033801 GCCAGGAATTTCCGATCATGTG 59.966 50.000 9.77 1.22 42.75 3.21
7681 12137 1.534729 ACTTGACGCCAGGAATTTCC 58.465 50.000 7.39 7.39 36.58 3.13
7689 12145 1.531149 CCAGTAACAACTTGACGCCAG 59.469 52.381 0.00 0.00 0.00 4.85
7716 12172 4.908601 AGGATACAATTGACAGTGTGGA 57.091 40.909 13.59 0.00 41.41 4.02
7717 12173 5.964958 AAAGGATACAATTGACAGTGTGG 57.035 39.130 13.59 0.00 41.41 4.17
7739 12393 7.225931 GTGGAAAAGGTGTATCATCGCTAATAA 59.774 37.037 0.00 0.00 0.00 1.40
7746 12400 3.259064 ACGTGGAAAAGGTGTATCATCG 58.741 45.455 0.00 0.00 0.00 3.84
7749 12403 4.074627 TCAACGTGGAAAAGGTGTATCA 57.925 40.909 0.00 0.00 0.00 2.15
7760 12414 4.456535 TCTTTCTGGAATTCAACGTGGAA 58.543 39.130 8.06 8.06 0.00 3.53
7764 12418 6.693315 TTCTTTCTTTCTGGAATTCAACGT 57.307 33.333 7.93 0.00 0.00 3.99
7903 12562 7.885297 TCCACTGAAAACCTCTTTCAAATATG 58.115 34.615 1.94 0.00 37.89 1.78
7904 12563 8.360390 GTTCCACTGAAAACCTCTTTCAAATAT 58.640 33.333 1.94 0.00 37.89 1.28
7923 12582 1.111277 GCCACAAAGGTTGTTCCACT 58.889 50.000 0.00 0.00 43.23 4.00
7928 12587 4.672899 AGGTATATGCCACAAAGGTTGTT 58.327 39.130 12.79 0.00 43.23 2.83
7930 12589 4.096382 GTGAGGTATATGCCACAAAGGTTG 59.904 45.833 11.31 0.00 40.61 3.77
7934 12593 3.884895 TGGTGAGGTATATGCCACAAAG 58.115 45.455 11.31 0.00 31.24 2.77
7936 12595 4.518278 AATGGTGAGGTATATGCCACAA 57.482 40.909 11.31 0.00 31.24 3.33
7938 12597 7.883311 ACTAATAAATGGTGAGGTATATGCCAC 59.117 37.037 12.79 6.47 31.47 5.01
8012 12673 4.647424 TGTCGAAAAACTTCCATTTGCT 57.353 36.364 0.00 0.00 0.00 3.91
8065 12726 2.871096 TGTTTTCGTAGGAGGCCAAT 57.129 45.000 5.01 0.00 0.00 3.16
8078 12739 6.651225 GGGCACTCTGGTCTATATATGTTTTC 59.349 42.308 0.00 0.00 0.00 2.29
8079 12740 6.101150 TGGGCACTCTGGTCTATATATGTTTT 59.899 38.462 0.00 0.00 0.00 2.43
8089 12750 1.414158 GCTATGGGCACTCTGGTCTA 58.586 55.000 0.00 0.00 41.35 2.59
8110 12771 2.028476 TGCCCTTCCGATTACCATATCG 60.028 50.000 0.00 0.00 45.27 2.92
8112 12773 4.447138 TTTGCCCTTCCGATTACCATAT 57.553 40.909 0.00 0.00 0.00 1.78
8116 12777 3.445805 TCATTTTTGCCCTTCCGATTACC 59.554 43.478 0.00 0.00 0.00 2.85
8117 12778 4.082463 TGTCATTTTTGCCCTTCCGATTAC 60.082 41.667 0.00 0.00 0.00 1.89
8118 12779 4.082845 TGTCATTTTTGCCCTTCCGATTA 58.917 39.130 0.00 0.00 0.00 1.75
8119 12780 2.896685 TGTCATTTTTGCCCTTCCGATT 59.103 40.909 0.00 0.00 0.00 3.34
8121 12782 1.988293 TGTCATTTTTGCCCTTCCGA 58.012 45.000 0.00 0.00 0.00 4.55
8122 12783 2.810439 TTGTCATTTTTGCCCTTCCG 57.190 45.000 0.00 0.00 0.00 4.30
8123 12784 4.640364 TCATTTGTCATTTTTGCCCTTCC 58.360 39.130 0.00 0.00 0.00 3.46
8127 12788 6.092533 CCTTGTATCATTTGTCATTTTTGCCC 59.907 38.462 0.00 0.00 0.00 5.36
8128 12789 6.873076 TCCTTGTATCATTTGTCATTTTTGCC 59.127 34.615 0.00 0.00 0.00 4.52
8141 12803 5.759059 TGAGCCAGAATTCCTTGTATCATT 58.241 37.500 0.65 0.00 0.00 2.57
8176 12838 9.615660 AGGTCTTCCCTGTGAAATACATATATA 57.384 33.333 0.00 0.00 44.08 0.86
8177 12839 8.511748 AGGTCTTCCCTGTGAAATACATATAT 57.488 34.615 0.00 0.00 44.08 0.86
8178 12840 7.931015 AGGTCTTCCCTGTGAAATACATATA 57.069 36.000 0.00 0.00 44.08 0.86
8179 12841 6.831664 AGGTCTTCCCTGTGAAATACATAT 57.168 37.500 0.00 0.00 44.08 1.78
8198 12862 3.617263 CGCAATGTACCTAACTTCAGGTC 59.383 47.826 0.00 0.00 46.34 3.85
8205 12869 4.540359 TGGTAACGCAATGTACCTAACT 57.460 40.909 1.86 0.00 42.51 2.24
8230 12895 9.457110 GTGTAAGATCTGATGTATTACTGTCTG 57.543 37.037 0.00 0.00 0.00 3.51
8241 12906 9.634021 TCATAACTAGAGTGTAAGATCTGATGT 57.366 33.333 0.00 0.00 0.00 3.06
8252 12917 9.642343 ACACTGGATAATCATAACTAGAGTGTA 57.358 33.333 0.00 0.00 38.75 2.90
8253 12918 8.540507 ACACTGGATAATCATAACTAGAGTGT 57.459 34.615 0.00 0.00 36.40 3.55
8256 12921 9.915629 GGTTACACTGGATAATCATAACTAGAG 57.084 37.037 0.00 0.00 0.00 2.43
8257 12922 9.656323 AGGTTACACTGGATAATCATAACTAGA 57.344 33.333 0.00 0.00 0.00 2.43
8258 12923 9.698309 CAGGTTACACTGGATAATCATAACTAG 57.302 37.037 0.00 0.00 34.84 2.57
8273 12938 2.631160 TGTGGTTCCAGGTTACACTG 57.369 50.000 10.18 0.00 38.21 3.66
8274 12939 2.775384 TCTTGTGGTTCCAGGTTACACT 59.225 45.455 10.18 0.00 33.44 3.55
8275 12940 2.876550 GTCTTGTGGTTCCAGGTTACAC 59.123 50.000 0.00 0.00 0.00 2.90
8276 12941 2.484065 CGTCTTGTGGTTCCAGGTTACA 60.484 50.000 0.00 0.00 0.00 2.41
8277 12942 2.140717 CGTCTTGTGGTTCCAGGTTAC 58.859 52.381 0.00 0.00 0.00 2.50
8278 12943 1.071071 CCGTCTTGTGGTTCCAGGTTA 59.929 52.381 0.00 0.00 0.00 2.85
8279 12944 0.179029 CCGTCTTGTGGTTCCAGGTT 60.179 55.000 0.00 0.00 0.00 3.50
8280 12945 1.342672 ACCGTCTTGTGGTTCCAGGT 61.343 55.000 0.00 0.00 35.82 4.00
8281 12946 0.179029 AACCGTCTTGTGGTTCCAGG 60.179 55.000 0.00 0.00 46.61 4.45
8282 12947 0.944386 CAACCGTCTTGTGGTTCCAG 59.056 55.000 0.00 0.00 46.61 3.86
8283 12948 0.464735 CCAACCGTCTTGTGGTTCCA 60.465 55.000 0.00 0.00 46.61 3.53
8284 12949 1.792118 GCCAACCGTCTTGTGGTTCC 61.792 60.000 0.00 0.00 46.61 3.62
8285 12950 1.652563 GCCAACCGTCTTGTGGTTC 59.347 57.895 0.00 0.00 46.61 3.62
8287 12952 1.412453 TAGGCCAACCGTCTTGTGGT 61.412 55.000 5.01 0.00 42.98 4.16
8288 12953 0.953960 GTAGGCCAACCGTCTTGTGG 60.954 60.000 5.01 0.00 42.76 4.17
8289 12954 1.289109 CGTAGGCCAACCGTCTTGTG 61.289 60.000 5.01 0.00 42.76 3.33
8290 12955 1.005394 CGTAGGCCAACCGTCTTGT 60.005 57.895 5.01 0.00 42.76 3.16
8291 12956 2.388232 GCGTAGGCCAACCGTCTTG 61.388 63.158 5.01 0.00 42.76 3.02
8292 12957 2.047560 GCGTAGGCCAACCGTCTT 60.048 61.111 5.01 0.00 42.76 3.01
8303 12968 0.392060 GGTTGGTAGGTTGGCGTAGG 60.392 60.000 0.00 0.00 0.00 3.18
8304 12969 0.322322 TGGTTGGTAGGTTGGCGTAG 59.678 55.000 0.00 0.00 0.00 3.51
8305 12970 0.763652 TTGGTTGGTAGGTTGGCGTA 59.236 50.000 0.00 0.00 0.00 4.42
8306 12971 0.111639 ATTGGTTGGTAGGTTGGCGT 59.888 50.000 0.00 0.00 0.00 5.68
8307 12972 2.116827 TATTGGTTGGTAGGTTGGCG 57.883 50.000 0.00 0.00 0.00 5.69
8308 12973 3.574826 TGTTTATTGGTTGGTAGGTTGGC 59.425 43.478 0.00 0.00 0.00 4.52
8309 12974 5.245075 ACATGTTTATTGGTTGGTAGGTTGG 59.755 40.000 0.00 0.00 0.00 3.77
8310 12975 6.339587 ACATGTTTATTGGTTGGTAGGTTG 57.660 37.500 0.00 0.00 0.00 3.77
8311 12976 6.987403 AACATGTTTATTGGTTGGTAGGTT 57.013 33.333 4.92 0.00 0.00 3.50
8312 12977 6.987403 AAACATGTTTATTGGTTGGTAGGT 57.013 33.333 22.10 0.00 0.00 3.08
8313 12978 7.650834 CAAAACATGTTTATTGGTTGGTAGG 57.349 36.000 23.53 0.00 31.63 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.