Multiple sequence alignment - TraesCS1B01G390900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G390900 chr1B 100.000 3471 0 0 1 3471 624078579 624082049 0.000000e+00 6410.0
1 TraesCS1B01G390900 chr1B 100.000 34 0 0 130 163 624072808 624072775 2.890000e-06 63.9
2 TraesCS1B01G390900 chr1A 84.260 1277 139 28 994 2262 548507245 548508467 0.000000e+00 1188.0
3 TraesCS1B01G390900 chr1A 79.770 1043 153 36 1000 2010 548525915 548526931 0.000000e+00 704.0
4 TraesCS1B01G390900 chr1A 89.457 313 21 2 441 753 569772807 569773107 5.430000e-103 385.0
5 TraesCS1B01G390900 chr1A 90.761 184 2 1 240 408 569772521 569772704 7.490000e-57 231.0
6 TraesCS1B01G390900 chr1A 83.636 220 26 4 2898 3113 548513273 548513486 7.600000e-47 198.0
7 TraesCS1B01G390900 chr1A 77.642 246 25 11 2496 2734 548527507 548527729 4.700000e-24 122.0
8 TraesCS1B01G390900 chr1A 72.622 347 82 12 1030 1370 489393718 489393379 6.130000e-18 102.0
9 TraesCS1B01G390900 chr1A 71.758 347 85 12 1030 1370 489361150 489360811 6.170000e-13 86.1
10 TraesCS1B01G390900 chr1D 86.738 935 96 11 998 1928 453679817 453680727 0.000000e+00 1014.0
11 TraesCS1B01G390900 chr1D 78.788 1353 210 41 1216 2530 453762714 453764027 0.000000e+00 837.0
12 TraesCS1B01G390900 chr1D 78.781 919 127 38 2235 3113 453680749 453681639 3.910000e-154 555.0
13 TraesCS1B01G390900 chr1D 94.512 328 12 4 2801 3127 453789929 453790251 5.170000e-138 501.0
14 TraesCS1B01G390900 chr1D 87.393 349 38 4 3128 3471 453790293 453790640 2.510000e-106 396.0
15 TraesCS1B01G390900 chr1D 89.447 199 14 6 1000 1196 453762471 453762664 9.620000e-61 244.0
16 TraesCS1B01G390900 chr1D 85.149 202 28 2 2292 2492 453763749 453763949 4.540000e-49 206.0
17 TraesCS1B01G390900 chr1D 84.444 135 11 7 2363 2492 453680772 453680901 1.310000e-24 124.0
18 TraesCS1B01G390900 chr1D 73.563 348 76 13 1030 1370 395410578 395410240 6.090000e-23 119.0
19 TraesCS1B01G390900 chr1D 88.000 100 10 2 2363 2461 453763748 453763846 2.190000e-22 117.0
20 TraesCS1B01G390900 chr1D 100.000 34 0 0 130 163 386788214 386788181 2.890000e-06 63.9
21 TraesCS1B01G390900 chr2B 87.415 588 24 19 441 991 13312818 13313392 6.320000e-177 630.0
22 TraesCS1B01G390900 chr2B 88.587 184 6 2 240 408 13312539 13312722 3.510000e-50 209.0
23 TraesCS1B01G390900 chr2B 79.641 167 15 8 240 389 496330240 496330404 6.130000e-18 102.0
24 TraesCS1B01G390900 chr5D 92.405 316 12 2 443 758 545916850 545916547 1.140000e-119 440.0
25 TraesCS1B01G390900 chr5D 89.674 184 4 1 240 408 545917137 545916954 1.620000e-53 220.0
26 TraesCS1B01G390900 chr4A 90.968 310 16 2 441 750 623757635 623757932 1.160000e-109 407.0
27 TraesCS1B01G390900 chr4A 98.333 120 2 0 1 120 718839621 718839502 9.760000e-51 211.0
28 TraesCS1B01G390900 chr4A 88.587 184 6 1 240 408 623757347 623757530 3.510000e-50 209.0
29 TraesCS1B01G390900 chr4A 96.970 33 1 0 1274 1306 627321831 627321799 4.840000e-04 56.5
30 TraesCS1B01G390900 chr2D 97.500 120 2 1 1 120 2035472 2035590 1.630000e-48 204.0
31 TraesCS1B01G390900 chr2D 100.000 29 0 0 1278 1306 586693480 586693508 2.000000e-03 54.7
32 TraesCS1B01G390900 chr7B 80.838 167 13 8 240 389 671836060 671835896 2.830000e-21 113.0
33 TraesCS1B01G390900 chr4D 80.838 167 13 8 240 389 299323387 299323223 2.830000e-21 113.0
34 TraesCS1B01G390900 chr4D 97.143 35 1 0 127 161 35382703 35382737 3.740000e-05 60.2
35 TraesCS1B01G390900 chr3B 80.838 167 13 8 240 389 808222326 808222490 2.830000e-21 113.0
36 TraesCS1B01G390900 chr3A 96.667 60 2 0 240 299 11533558 11533499 2.200000e-17 100.0
37 TraesCS1B01G390900 chr3D 96.610 59 2 0 240 298 593659721 593659663 7.930000e-17 99.0
38 TraesCS1B01G390900 chr3D 70.930 344 87 11 1030 1367 57036033 57036369 6.220000e-08 69.4
39 TraesCS1B01G390900 chr6A 97.059 34 1 0 1273 1306 29319825 29319792 1.350000e-04 58.4
40 TraesCS1B01G390900 chrUn 96.970 33 1 0 1274 1306 103416182 103416214 4.840000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G390900 chr1B 624078579 624082049 3470 False 6410.000000 6410 100.0000 1 3471 1 chr1B.!!$F1 3470
1 TraesCS1B01G390900 chr1A 548507245 548508467 1222 False 1188.000000 1188 84.2600 994 2262 1 chr1A.!!$F1 1268
2 TraesCS1B01G390900 chr1A 548525915 548527729 1814 False 413.000000 704 78.7060 1000 2734 2 chr1A.!!$F3 1734
3 TraesCS1B01G390900 chr1A 569772521 569773107 586 False 308.000000 385 90.1090 240 753 2 chr1A.!!$F4 513
4 TraesCS1B01G390900 chr1D 453679817 453681639 1822 False 564.333333 1014 83.3210 998 3113 3 chr1D.!!$F1 2115
5 TraesCS1B01G390900 chr1D 453789929 453790640 711 False 448.500000 501 90.9525 2801 3471 2 chr1D.!!$F3 670
6 TraesCS1B01G390900 chr1D 453762471 453764027 1556 False 351.000000 837 85.3460 1000 2530 4 chr1D.!!$F2 1530
7 TraesCS1B01G390900 chr2B 13312539 13313392 853 False 419.500000 630 88.0010 240 991 2 chr2B.!!$F2 751
8 TraesCS1B01G390900 chr5D 545916547 545917137 590 True 330.000000 440 91.0395 240 758 2 chr5D.!!$R1 518
9 TraesCS1B01G390900 chr4A 623757347 623757932 585 False 308.000000 407 89.7775 240 750 2 chr4A.!!$F1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.182775 AGTTGTTTGGTCGGCTTCCT 59.817 50.0 0.0 0.0 0.00 3.36 F
228 229 0.250338 GCTTCCTTCCTGGACGTGTT 60.250 55.0 0.0 0.0 46.14 3.32 F
1314 1482 0.107165 GCGCCCTCCTCAGGTATTTT 60.107 55.0 0.0 0.0 38.30 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1267 1435 0.172578 CGGCAGTCGACCACAGAATA 59.827 55.0 13.01 0.0 42.43 1.75 R
2222 2604 0.034186 TCTATTTGTGCCCCTGCCAG 60.034 55.0 0.00 0.0 36.33 4.85 R
3043 3513 0.112995 TCTGAAACCCCTTGCTGCAT 59.887 50.0 1.84 0.0 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.980416 ACTTATGGAGTTATGGTCTAGTCC 57.020 41.667 0.00 0.00 33.92 3.85
32 33 6.441222 ACTTATGGAGTTATGGTCTAGTCCA 58.559 40.000 11.26 11.26 45.37 4.02
33 34 6.901300 ACTTATGGAGTTATGGTCTAGTCCAA 59.099 38.462 12.87 0.44 44.68 3.53
34 35 7.402071 ACTTATGGAGTTATGGTCTAGTCCAAA 59.598 37.037 12.87 6.24 44.68 3.28
35 36 5.677319 TGGAGTTATGGTCTAGTCCAAAG 57.323 43.478 12.87 0.00 40.13 2.77
36 37 5.338632 TGGAGTTATGGTCTAGTCCAAAGA 58.661 41.667 12.87 0.00 40.13 2.52
37 38 5.783360 TGGAGTTATGGTCTAGTCCAAAGAA 59.217 40.000 12.87 5.26 40.13 2.52
38 39 6.271391 TGGAGTTATGGTCTAGTCCAAAGAAA 59.729 38.462 12.87 3.19 40.13 2.52
39 40 7.166167 GGAGTTATGGTCTAGTCCAAAGAAAA 58.834 38.462 12.87 0.97 41.09 2.29
40 41 7.334671 GGAGTTATGGTCTAGTCCAAAGAAAAG 59.665 40.741 12.87 0.00 41.09 2.27
41 42 7.974504 AGTTATGGTCTAGTCCAAAGAAAAGA 58.025 34.615 12.87 0.00 41.09 2.52
42 43 7.878644 AGTTATGGTCTAGTCCAAAGAAAAGAC 59.121 37.037 12.87 3.86 41.09 3.01
43 44 4.628074 TGGTCTAGTCCAAAGAAAAGACG 58.372 43.478 6.21 0.00 37.10 4.18
44 45 4.342951 TGGTCTAGTCCAAAGAAAAGACGA 59.657 41.667 6.21 0.00 37.10 4.20
45 46 4.924462 GGTCTAGTCCAAAGAAAAGACGAG 59.076 45.833 0.64 0.00 37.10 4.18
46 47 4.924462 GTCTAGTCCAAAGAAAAGACGAGG 59.076 45.833 0.00 0.00 34.97 4.63
47 48 2.495084 AGTCCAAAGAAAAGACGAGGC 58.505 47.619 0.00 0.00 35.65 4.70
48 49 2.104963 AGTCCAAAGAAAAGACGAGGCT 59.895 45.455 0.00 0.00 35.65 4.58
49 50 2.879026 GTCCAAAGAAAAGACGAGGCTT 59.121 45.455 0.00 0.00 0.00 4.35
50 51 4.062991 GTCCAAAGAAAAGACGAGGCTTA 58.937 43.478 0.00 0.00 0.00 3.09
51 52 4.514066 GTCCAAAGAAAAGACGAGGCTTAA 59.486 41.667 0.00 0.00 0.00 1.85
52 53 5.008316 GTCCAAAGAAAAGACGAGGCTTAAA 59.992 40.000 0.00 0.00 0.00 1.52
53 54 5.008316 TCCAAAGAAAAGACGAGGCTTAAAC 59.992 40.000 0.00 0.00 0.00 2.01
54 55 5.220970 CCAAAGAAAAGACGAGGCTTAAACA 60.221 40.000 0.00 0.00 0.00 2.83
55 56 5.419760 AAGAAAAGACGAGGCTTAAACAC 57.580 39.130 0.00 0.00 0.00 3.32
56 57 4.448210 AGAAAAGACGAGGCTTAAACACA 58.552 39.130 0.00 0.00 0.00 3.72
57 58 4.879545 AGAAAAGACGAGGCTTAAACACAA 59.120 37.500 0.00 0.00 0.00 3.33
58 59 4.813296 AAAGACGAGGCTTAAACACAAG 57.187 40.909 0.00 0.00 0.00 3.16
70 71 6.496524 CTTAAACACAAGCAAACACTTAGC 57.503 37.500 0.00 0.00 0.00 3.09
71 72 4.448537 AAACACAAGCAAACACTTAGCA 57.551 36.364 0.00 0.00 0.00 3.49
72 73 3.420839 ACACAAGCAAACACTTAGCAC 57.579 42.857 0.00 0.00 0.00 4.40
73 74 3.016736 ACACAAGCAAACACTTAGCACT 58.983 40.909 0.00 0.00 0.00 4.40
74 75 3.181497 ACACAAGCAAACACTTAGCACTG 60.181 43.478 0.00 0.00 0.00 3.66
75 76 3.065233 CACAAGCAAACACTTAGCACTGA 59.935 43.478 0.00 0.00 0.00 3.41
76 77 3.694072 ACAAGCAAACACTTAGCACTGAA 59.306 39.130 0.00 0.00 0.00 3.02
77 78 4.157656 ACAAGCAAACACTTAGCACTGAAA 59.842 37.500 0.00 0.00 0.00 2.69
78 79 4.981806 AGCAAACACTTAGCACTGAAAA 57.018 36.364 0.00 0.00 0.00 2.29
79 80 4.672409 AGCAAACACTTAGCACTGAAAAC 58.328 39.130 0.00 0.00 0.00 2.43
80 81 4.157656 AGCAAACACTTAGCACTGAAAACA 59.842 37.500 0.00 0.00 0.00 2.83
81 82 4.500477 GCAAACACTTAGCACTGAAAACAG 59.500 41.667 0.00 0.00 0.00 3.16
82 83 5.640732 CAAACACTTAGCACTGAAAACAGT 58.359 37.500 0.00 0.00 35.49 3.55
83 84 6.676943 GCAAACACTTAGCACTGAAAACAGTA 60.677 38.462 0.00 0.00 33.50 2.74
84 85 6.995511 AACACTTAGCACTGAAAACAGTAA 57.004 33.333 0.00 0.00 33.50 2.24
85 86 6.995511 ACACTTAGCACTGAAAACAGTAAA 57.004 33.333 0.00 0.00 33.50 2.01
86 87 7.016361 ACACTTAGCACTGAAAACAGTAAAG 57.984 36.000 0.00 0.00 33.50 1.85
87 88 6.598064 ACACTTAGCACTGAAAACAGTAAAGT 59.402 34.615 13.75 13.75 34.78 2.66
88 89 7.126398 CACTTAGCACTGAAAACAGTAAAGTC 58.874 38.462 15.32 2.33 33.48 3.01
89 90 6.821665 ACTTAGCACTGAAAACAGTAAAGTCA 59.178 34.615 13.75 0.00 31.81 3.41
90 91 5.741388 AGCACTGAAAACAGTAAAGTCAG 57.259 39.130 0.00 0.00 41.21 3.51
91 92 5.428253 AGCACTGAAAACAGTAAAGTCAGA 58.572 37.500 6.01 0.00 38.37 3.27
92 93 5.880332 AGCACTGAAAACAGTAAAGTCAGAA 59.120 36.000 6.01 0.00 38.37 3.02
93 94 6.037610 AGCACTGAAAACAGTAAAGTCAGAAG 59.962 38.462 6.01 0.26 38.37 2.85
94 95 6.719365 CACTGAAAACAGTAAAGTCAGAAGG 58.281 40.000 6.01 0.00 38.37 3.46
95 96 5.297029 ACTGAAAACAGTAAAGTCAGAAGGC 59.703 40.000 6.01 0.00 38.37 4.35
96 97 5.437060 TGAAAACAGTAAAGTCAGAAGGCT 58.563 37.500 0.00 0.00 0.00 4.58
97 98 6.588204 TGAAAACAGTAAAGTCAGAAGGCTA 58.412 36.000 0.00 0.00 0.00 3.93
98 99 7.224297 TGAAAACAGTAAAGTCAGAAGGCTAT 58.776 34.615 0.00 0.00 0.00 2.97
99 100 8.372459 TGAAAACAGTAAAGTCAGAAGGCTATA 58.628 33.333 0.00 0.00 0.00 1.31
100 101 8.549338 AAAACAGTAAAGTCAGAAGGCTATAC 57.451 34.615 0.00 0.00 0.00 1.47
101 102 6.852420 ACAGTAAAGTCAGAAGGCTATACA 57.148 37.500 0.00 0.00 0.00 2.29
102 103 6.868622 ACAGTAAAGTCAGAAGGCTATACAG 58.131 40.000 0.00 0.00 0.00 2.74
123 124 7.568199 ACAGCAAAACTCAAACATACTAAGT 57.432 32.000 0.00 0.00 0.00 2.24
124 125 8.671384 ACAGCAAAACTCAAACATACTAAGTA 57.329 30.769 0.00 0.00 0.00 2.24
125 126 8.774586 ACAGCAAAACTCAAACATACTAAGTAG 58.225 33.333 0.00 0.00 0.00 2.57
126 127 8.988934 CAGCAAAACTCAAACATACTAAGTAGA 58.011 33.333 0.00 0.00 0.00 2.59
127 128 9.726438 AGCAAAACTCAAACATACTAAGTAGAT 57.274 29.630 0.00 0.00 0.00 1.98
128 129 9.974750 GCAAAACTCAAACATACTAAGTAGATC 57.025 33.333 0.00 0.00 0.00 2.75
179 180 5.718724 ATTAGTACTACAATAGACCGGCC 57.281 43.478 0.00 0.00 0.00 6.13
180 181 1.952296 AGTACTACAATAGACCGGCCG 59.048 52.381 21.04 21.04 0.00 6.13
181 182 0.670162 TACTACAATAGACCGGCCGC 59.330 55.000 22.85 7.25 0.00 6.53
182 183 1.660575 CTACAATAGACCGGCCGCG 60.661 63.158 22.85 16.22 0.00 6.46
183 184 3.141522 TACAATAGACCGGCCGCGG 62.142 63.158 24.05 24.05 0.00 6.46
198 199 4.079850 CGGGCTGCAGCTCTCAGT 62.080 66.667 34.48 0.00 40.01 3.41
199 200 2.350514 GGGCTGCAGCTCTCAGTT 59.649 61.111 35.82 0.00 38.82 3.16
200 201 2.039405 GGGCTGCAGCTCTCAGTTG 61.039 63.158 35.82 0.00 38.82 3.16
201 202 1.302351 GGCTGCAGCTCTCAGTTGT 60.302 57.895 35.82 0.00 41.70 3.32
202 203 0.888285 GGCTGCAGCTCTCAGTTGTT 60.888 55.000 35.82 0.00 41.70 2.83
203 204 0.950116 GCTGCAGCTCTCAGTTGTTT 59.050 50.000 31.33 0.00 38.21 2.83
204 205 1.334779 GCTGCAGCTCTCAGTTGTTTG 60.335 52.381 31.33 0.00 38.21 2.93
205 206 1.266175 CTGCAGCTCTCAGTTGTTTGG 59.734 52.381 0.00 0.00 0.00 3.28
206 207 1.312815 GCAGCTCTCAGTTGTTTGGT 58.687 50.000 0.00 0.00 0.00 3.67
207 208 1.265365 GCAGCTCTCAGTTGTTTGGTC 59.735 52.381 0.00 0.00 0.00 4.02
208 209 1.528586 CAGCTCTCAGTTGTTTGGTCG 59.471 52.381 0.00 0.00 0.00 4.79
209 210 0.868406 GCTCTCAGTTGTTTGGTCGG 59.132 55.000 0.00 0.00 0.00 4.79
210 211 0.868406 CTCTCAGTTGTTTGGTCGGC 59.132 55.000 0.00 0.00 0.00 5.54
211 212 0.468226 TCTCAGTTGTTTGGTCGGCT 59.532 50.000 0.00 0.00 0.00 5.52
212 213 1.134220 TCTCAGTTGTTTGGTCGGCTT 60.134 47.619 0.00 0.00 0.00 4.35
213 214 1.264288 CTCAGTTGTTTGGTCGGCTTC 59.736 52.381 0.00 0.00 0.00 3.86
214 215 0.310854 CAGTTGTTTGGTCGGCTTCC 59.689 55.000 0.00 0.00 0.00 3.46
215 216 0.182775 AGTTGTTTGGTCGGCTTCCT 59.817 50.000 0.00 0.00 0.00 3.36
216 217 1.029681 GTTGTTTGGTCGGCTTCCTT 58.970 50.000 0.00 0.00 0.00 3.36
217 218 1.001706 GTTGTTTGGTCGGCTTCCTTC 60.002 52.381 0.00 0.00 0.00 3.46
218 219 0.536460 TGTTTGGTCGGCTTCCTTCC 60.536 55.000 0.00 0.00 0.00 3.46
219 220 0.250770 GTTTGGTCGGCTTCCTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
220 221 0.250727 TTTGGTCGGCTTCCTTCCTG 60.251 55.000 0.00 0.00 0.00 3.86
221 222 2.124507 TTGGTCGGCTTCCTTCCTGG 62.125 60.000 0.00 0.00 37.10 4.45
222 223 2.291043 GGTCGGCTTCCTTCCTGGA 61.291 63.158 0.00 0.00 44.51 3.86
223 224 1.079057 GTCGGCTTCCTTCCTGGAC 60.079 63.158 0.00 0.00 46.14 4.02
224 225 2.125512 CGGCTTCCTTCCTGGACG 60.126 66.667 0.00 0.00 46.14 4.79
225 226 2.943978 CGGCTTCCTTCCTGGACGT 61.944 63.158 0.00 0.00 46.14 4.34
226 227 1.376037 GGCTTCCTTCCTGGACGTG 60.376 63.158 0.00 0.00 46.14 4.49
227 228 1.371558 GCTTCCTTCCTGGACGTGT 59.628 57.895 0.00 0.00 46.14 4.49
228 229 0.250338 GCTTCCTTCCTGGACGTGTT 60.250 55.000 0.00 0.00 46.14 3.32
229 230 1.512926 CTTCCTTCCTGGACGTGTTG 58.487 55.000 0.00 0.00 46.14 3.33
230 231 0.834612 TTCCTTCCTGGACGTGTTGT 59.165 50.000 0.00 0.00 46.14 3.32
231 232 1.202604 TTCCTTCCTGGACGTGTTGTC 60.203 52.381 0.00 0.00 46.14 3.18
238 239 4.167376 GACGTGTTGTCGCAAACG 57.833 55.556 0.00 16.75 37.96 3.60
330 346 1.227089 CGGTCCGAGCTCAGGAATG 60.227 63.158 23.06 16.32 39.84 2.67
448 539 1.302511 TCCAGTTCAAGGCGCCTTC 60.303 57.895 38.34 26.61 33.42 3.46
529 620 2.265182 GCCCGATCTCTCCTCTCCG 61.265 68.421 0.00 0.00 0.00 4.63
573 664 2.136863 CCCCTCTCCTCTCCTACAGTA 58.863 57.143 0.00 0.00 0.00 2.74
588 679 2.436115 GTACCACCTCGCCTTGCC 60.436 66.667 0.00 0.00 0.00 4.52
589 680 3.712907 TACCACCTCGCCTTGCCC 61.713 66.667 0.00 0.00 0.00 5.36
686 777 1.219522 CGACGAACCACCTTGTCCAC 61.220 60.000 0.00 0.00 0.00 4.02
690 781 1.337823 CGAACCACCTTGTCCACTAGG 60.338 57.143 5.74 5.74 43.16 3.02
824 942 1.376812 GTCCCCGCCATCGAGTTTT 60.377 57.895 0.00 0.00 38.10 2.43
825 943 0.958876 GTCCCCGCCATCGAGTTTTT 60.959 55.000 0.00 0.00 38.10 1.94
847 965 2.139118 GTGAGTCACTGCACCTTTCTC 58.861 52.381 16.26 0.00 0.00 2.87
858 976 0.977395 ACCTTTCTCCTCTGTTCCCG 59.023 55.000 0.00 0.00 0.00 5.14
876 994 1.651240 CGCTTCTGAATGTGGCCAGG 61.651 60.000 5.11 0.00 0.00 4.45
878 996 1.887956 GCTTCTGAATGTGGCCAGGAA 60.888 52.381 5.11 3.45 0.00 3.36
879 997 2.089980 CTTCTGAATGTGGCCAGGAAG 58.910 52.381 5.11 9.61 0.00 3.46
880 998 1.067295 TCTGAATGTGGCCAGGAAGT 58.933 50.000 5.11 0.00 0.00 3.01
978 1104 1.896660 TCCGGTGCAGGAAAACAGC 60.897 57.895 0.00 0.00 37.36 4.40
980 1106 2.644992 GGTGCAGGAAAACAGCGG 59.355 61.111 0.00 0.00 33.73 5.52
982 1108 2.203337 TGCAGGAAAACAGCGGCT 60.203 55.556 0.00 0.00 33.73 5.52
984 1110 2.863153 CAGGAAAACAGCGGCTCG 59.137 61.111 0.00 0.00 0.00 5.03
985 1111 2.358737 AGGAAAACAGCGGCTCGG 60.359 61.111 0.00 0.00 0.00 4.63
986 1112 2.668550 GGAAAACAGCGGCTCGGT 60.669 61.111 0.00 0.00 38.40 4.69
987 1113 2.677979 GGAAAACAGCGGCTCGGTC 61.678 63.158 0.00 0.00 34.62 4.79
988 1114 1.668151 GAAAACAGCGGCTCGGTCT 60.668 57.895 0.00 0.00 34.62 3.85
989 1115 1.901650 GAAAACAGCGGCTCGGTCTG 61.902 60.000 0.00 0.00 34.62 3.51
990 1116 3.883744 AAACAGCGGCTCGGTCTGG 62.884 63.158 0.00 0.00 34.62 3.86
1267 1435 0.324368 TCCCCGACACTGCTATGACT 60.324 55.000 0.00 0.00 0.00 3.41
1311 1479 3.227276 CGCGCCCTCCTCAGGTAT 61.227 66.667 0.00 0.00 38.30 2.73
1312 1480 2.797278 CGCGCCCTCCTCAGGTATT 61.797 63.158 0.00 0.00 38.30 1.89
1313 1481 1.527370 GCGCCCTCCTCAGGTATTT 59.473 57.895 0.00 0.00 38.30 1.40
1314 1482 0.107165 GCGCCCTCCTCAGGTATTTT 60.107 55.000 0.00 0.00 38.30 1.82
1331 1499 2.363788 TTTGACGAGGATGAGAACCG 57.636 50.000 0.00 0.00 0.00 4.44
1334 1502 1.668101 GACGAGGATGAGAACCGGCT 61.668 60.000 0.00 0.00 0.00 5.52
1398 1566 2.202623 CGGCGTCCACAGAGCTAC 60.203 66.667 0.00 0.00 0.00 3.58
1488 1659 0.112412 ACTTGGGCCCATTCTTCGTT 59.888 50.000 29.23 0.26 0.00 3.85
1506 1677 2.289694 CGTTGTCTTCCTCACCCTTCAT 60.290 50.000 0.00 0.00 0.00 2.57
1554 1725 2.593257 GTTTACTCGTCCGAGACAAGG 58.407 52.381 22.34 0.00 44.53 3.61
1568 1739 0.605589 ACAAGGACTTGGAGCTCTCG 59.394 55.000 14.64 4.84 44.45 4.04
1572 1743 1.251527 GGACTTGGAGCTCTCGGTCA 61.252 60.000 23.55 9.71 39.38 4.02
1584 1755 0.905357 CTCGGTCATCCCTTCACCTT 59.095 55.000 0.00 0.00 0.00 3.50
1588 1759 1.614317 GGTCATCCCTTCACCTTGGTG 60.614 57.143 13.24 13.24 0.00 4.17
1606 1777 4.681744 TGGTGTTTTTGAAGATGAACTGC 58.318 39.130 0.00 0.00 0.00 4.40
1607 1778 3.730715 GGTGTTTTTGAAGATGAACTGCG 59.269 43.478 0.00 0.00 0.00 5.18
1612 1783 0.518636 TGAAGATGAACTGCGCTTGC 59.481 50.000 9.73 0.00 39.78 4.01
1670 1841 0.930310 TATCTCTTTGTGCGCGATGC 59.070 50.000 12.10 0.00 46.70 3.91
1730 1907 0.761187 TTGTCAGAGGTTGAGCTGCT 59.239 50.000 0.00 0.00 36.21 4.24
1747 1924 1.227089 CTGCTGGAGATTCCGGTCG 60.227 63.158 0.00 0.00 44.85 4.79
1748 1925 1.667154 CTGCTGGAGATTCCGGTCGA 61.667 60.000 0.00 0.00 44.85 4.20
1749 1926 1.066587 GCTGGAGATTCCGGTCGAG 59.933 63.158 0.00 0.00 44.85 4.04
1758 1935 0.742281 TTCCGGTCGAGGACTACGAG 60.742 60.000 0.00 0.00 40.56 4.18
1763 1940 2.223595 CGGTCGAGGACTACGAGTACTA 60.224 54.545 0.00 0.00 40.14 1.82
1785 1962 1.224592 GGTCCTCATTGCACCGGAT 59.775 57.895 9.46 0.00 0.00 4.18
1824 2001 1.576356 GGATTGCAGATCTGGACGAC 58.424 55.000 23.89 13.85 0.00 4.34
1860 2037 1.427072 CCTTGTGGTGGAGGGAGGTT 61.427 60.000 0.00 0.00 0.00 3.50
1892 2069 0.661187 GTTGCAGCATGGACACAACG 60.661 55.000 0.00 0.00 34.66 4.10
1918 2095 5.646793 ACAGTCATCAACCTCAAGAATCATG 59.353 40.000 0.00 0.00 0.00 3.07
1924 2101 4.945543 TCAACCTCAAGAATCATGTCCATG 59.054 41.667 0.71 0.71 40.09 3.66
1931 2108 4.327982 AGAATCATGTCCATGTAGACCG 57.672 45.455 7.13 0.00 39.72 4.79
1943 2126 0.179108 GTAGACCGTCCAGATGCACC 60.179 60.000 0.00 0.00 0.00 5.01
1948 2131 0.606401 CCGTCCAGATGCACCAAGTT 60.606 55.000 0.00 0.00 0.00 2.66
1949 2132 0.518636 CGTCCAGATGCACCAAGTTG 59.481 55.000 0.00 0.00 0.00 3.16
2031 2300 8.254508 ACCTACAAGATTGATCTCAAGTTACTC 58.745 37.037 0.00 0.00 39.47 2.59
2032 2301 7.708752 CCTACAAGATTGATCTCAAGTTACTCC 59.291 40.741 0.00 0.00 39.47 3.85
2033 2302 6.410540 ACAAGATTGATCTCAAGTTACTCCC 58.589 40.000 0.00 0.00 39.47 4.30
2034 2303 6.214412 ACAAGATTGATCTCAAGTTACTCCCT 59.786 38.462 0.00 0.00 39.47 4.20
2035 2304 6.478512 AGATTGATCTCAAGTTACTCCCTC 57.521 41.667 0.00 0.00 39.47 4.30
2036 2305 4.720649 TTGATCTCAAGTTACTCCCTCG 57.279 45.455 0.00 0.00 0.00 4.63
2037 2306 3.698289 TGATCTCAAGTTACTCCCTCGT 58.302 45.455 0.00 0.00 0.00 4.18
2038 2307 4.087182 TGATCTCAAGTTACTCCCTCGTT 58.913 43.478 0.00 0.00 0.00 3.85
2039 2308 4.158025 TGATCTCAAGTTACTCCCTCGTTC 59.842 45.833 0.00 0.00 0.00 3.95
2040 2309 2.824341 TCTCAAGTTACTCCCTCGTTCC 59.176 50.000 0.00 0.00 0.00 3.62
2041 2310 1.897802 TCAAGTTACTCCCTCGTTCCC 59.102 52.381 0.00 0.00 0.00 3.97
2042 2311 1.900486 CAAGTTACTCCCTCGTTCCCT 59.100 52.381 0.00 0.00 0.00 4.20
2043 2312 3.094572 CAAGTTACTCCCTCGTTCCCTA 58.905 50.000 0.00 0.00 0.00 3.53
2048 2317 1.900486 ACTCCCTCGTTCCCTAAGTTG 59.100 52.381 0.00 0.00 0.00 3.16
2090 2359 6.422100 TCGAAAGAGTTTTCTGAATCTGACAG 59.578 38.462 0.00 0.00 40.43 3.51
2092 2361 7.382488 CGAAAGAGTTTTCTGAATCTGACAGTA 59.618 37.037 1.59 0.00 40.43 2.74
2097 2369 8.764524 AGTTTTCTGAATCTGACAGTATACAC 57.235 34.615 5.50 0.00 36.81 2.90
2104 2382 4.042271 TCTGACAGTATACACACCCTCA 57.958 45.455 5.50 0.00 0.00 3.86
2106 2384 4.645136 TCTGACAGTATACACACCCTCATC 59.355 45.833 5.50 0.00 0.00 2.92
2126 2404 7.229506 CCTCATCCCCTATTTAAGCTTTTACAG 59.770 40.741 3.20 0.00 0.00 2.74
2129 2407 7.266905 TCCCCTATTTAAGCTTTTACAGTCT 57.733 36.000 3.20 0.00 0.00 3.24
2167 2545 9.866655 ATTATGTTTACTTCCATCCATATGTGT 57.133 29.630 1.24 0.00 0.00 3.72
2229 2611 8.627208 AGTGATAATATTACAATTCTGGCAGG 57.373 34.615 15.73 0.21 0.00 4.85
2250 2632 3.421844 GGGCACAAATAGAGAAACTGGT 58.578 45.455 0.00 0.00 0.00 4.00
2251 2633 3.826729 GGGCACAAATAGAGAAACTGGTT 59.173 43.478 0.00 0.00 0.00 3.67
2262 2644 3.416156 AGAAACTGGTTGATTCAGGAGC 58.584 45.455 0.00 0.00 36.62 4.70
2264 2646 2.957402 ACTGGTTGATTCAGGAGCAA 57.043 45.000 0.00 0.00 36.62 3.91
2272 2654 2.807967 TGATTCAGGAGCAAGTGAAACG 59.192 45.455 0.00 0.00 45.86 3.60
2289 2674 2.125106 GGGCAGCGACGAGGAATT 60.125 61.111 0.00 0.00 0.00 2.17
2290 2675 2.464459 GGGCAGCGACGAGGAATTG 61.464 63.158 0.00 0.00 0.00 2.32
2302 2687 3.265791 CGAGGAATTGGGAGAAAGTGAG 58.734 50.000 0.00 0.00 0.00 3.51
2330 2716 1.329906 GCAGCGATGAGGACATGAAAG 59.670 52.381 4.02 0.00 36.82 2.62
2360 2750 0.179065 TGGGAGCAGCGATGATGAAG 60.179 55.000 4.02 0.00 0.00 3.02
2361 2751 0.883814 GGGAGCAGCGATGATGAAGG 60.884 60.000 4.02 0.00 0.00 3.46
2375 2765 5.567037 TGATGAAGGAGGAGAAAGTGAAA 57.433 39.130 0.00 0.00 0.00 2.69
2377 2767 4.771114 TGAAGGAGGAGAAAGTGAAACA 57.229 40.909 0.00 0.00 41.43 2.83
2389 2779 0.235926 GTGAAACAGGAAGCAGCGAC 59.764 55.000 0.00 0.00 36.32 5.19
2393 2783 2.507992 CAGGAAGCAGCGACGAGG 60.508 66.667 0.00 0.00 0.00 4.63
2395 2785 2.261671 GGAAGCAGCGACGAGGAA 59.738 61.111 0.00 0.00 0.00 3.36
2398 2788 1.475441 GAAGCAGCGACGAGGAATCG 61.475 60.000 0.00 0.00 42.55 3.34
2441 2831 2.093447 AGCGACGAGGAAATGGAAGAAT 60.093 45.455 0.00 0.00 0.00 2.40
2501 2947 1.202855 AGTGCAGCTGGTCATTCTGTT 60.203 47.619 17.12 0.00 0.00 3.16
2525 2971 4.364860 ACTGTTTTGGTATTGGTTTTCGC 58.635 39.130 0.00 0.00 0.00 4.70
2530 2976 6.207810 TGTTTTGGTATTGGTTTTCGCTCTAT 59.792 34.615 0.00 0.00 0.00 1.98
2533 2979 5.250200 TGGTATTGGTTTTCGCTCTATGTT 58.750 37.500 0.00 0.00 0.00 2.71
2534 2980 5.353123 TGGTATTGGTTTTCGCTCTATGTTC 59.647 40.000 0.00 0.00 0.00 3.18
2575 3023 5.072055 TCTGAAGATGGCAGAAACATTTCA 58.928 37.500 7.10 0.00 39.29 2.69
2576 3024 5.713389 TCTGAAGATGGCAGAAACATTTCAT 59.287 36.000 7.10 0.00 39.29 2.57
2577 3025 5.716094 TGAAGATGGCAGAAACATTTCATG 58.284 37.500 7.10 3.97 39.61 3.07
2578 3026 6.571731 CTGAAGATGGCAGAAACATTTCATGT 60.572 38.462 7.10 0.00 39.34 3.21
2583 3038 3.382855 GCAGAAACATTTCATGTGTGCA 58.617 40.909 7.10 0.00 44.07 4.57
2590 3045 5.136816 ACATTTCATGTGTGCAAGCATTA 57.863 34.783 0.00 0.00 43.01 1.90
2596 3051 3.070476 TGTGTGCAAGCATTATCCTCA 57.930 42.857 0.00 0.00 0.00 3.86
2615 3070 1.323271 ACAGATCTCGTCCGGTGCAT 61.323 55.000 0.00 0.00 0.00 3.96
2616 3071 0.668535 CAGATCTCGTCCGGTGCATA 59.331 55.000 0.00 0.00 0.00 3.14
2617 3072 1.270826 CAGATCTCGTCCGGTGCATAT 59.729 52.381 0.00 0.00 0.00 1.78
2618 3073 1.964223 AGATCTCGTCCGGTGCATATT 59.036 47.619 0.00 0.00 0.00 1.28
2619 3074 3.057526 CAGATCTCGTCCGGTGCATATTA 60.058 47.826 0.00 0.00 0.00 0.98
2620 3075 3.764434 AGATCTCGTCCGGTGCATATTAT 59.236 43.478 0.00 0.00 0.00 1.28
2621 3076 4.948004 AGATCTCGTCCGGTGCATATTATA 59.052 41.667 0.00 0.00 0.00 0.98
2634 3089 7.693536 CGGTGCATATTATATATGTGCTGTTTG 59.306 37.037 12.72 0.00 36.78 2.93
2651 3106 5.437289 TGTTTGTTTCCAGTATTGCTCAG 57.563 39.130 0.00 0.00 0.00 3.35
2652 3107 4.229876 GTTTGTTTCCAGTATTGCTCAGC 58.770 43.478 0.00 0.00 0.00 4.26
2653 3108 3.138884 TGTTTCCAGTATTGCTCAGCA 57.861 42.857 0.00 0.00 36.47 4.41
2661 3116 4.883240 TTGCTCAGCAAGTCAGCA 57.117 50.000 8.40 0.00 43.99 4.41
2662 3117 4.883240 TGCTCAGCAAGTCAGCAA 57.117 50.000 0.00 0.00 40.22 3.91
2663 3118 0.664761 TTGCTCAGCAAGTCAGCAAC 59.335 50.000 8.40 0.00 45.91 4.17
2664 3119 0.179037 TGCTCAGCAAGTCAGCAACT 60.179 50.000 0.00 0.00 40.22 3.16
2665 3120 1.070601 TGCTCAGCAAGTCAGCAACTA 59.929 47.619 0.00 0.00 40.22 2.24
2701 3157 7.985476 TGGCAAGCTCAGAATTAATAACTTAC 58.015 34.615 0.00 0.00 0.00 2.34
2737 3193 2.159435 GGTCTGTGCGTTGAAACACTTT 60.159 45.455 1.99 0.00 37.68 2.66
2742 3198 1.134965 TGCGTTGAAACACTTTTGGGG 60.135 47.619 0.00 0.00 0.00 4.96
2748 3204 5.916320 CGTTGAAACACTTTTGGGGTATTAC 59.084 40.000 0.00 0.00 0.00 1.89
2749 3205 5.692613 TGAAACACTTTTGGGGTATTACG 57.307 39.130 0.00 0.00 0.00 3.18
2752 3208 6.490721 TGAAACACTTTTGGGGTATTACGATT 59.509 34.615 0.00 0.00 0.00 3.34
2753 3209 6.904463 AACACTTTTGGGGTATTACGATTT 57.096 33.333 0.00 0.00 0.00 2.17
2761 3217 5.350633 TGGGGTATTACGATTTCAGTAACG 58.649 41.667 0.00 0.00 36.96 3.18
2773 3229 3.291809 TCAGTAACGTTTCTGCGATGA 57.708 42.857 25.06 9.32 35.59 2.92
2774 3230 3.644823 TCAGTAACGTTTCTGCGATGAA 58.355 40.909 25.06 8.47 35.59 2.57
2780 3236 2.061773 CGTTTCTGCGATGAAGACTGT 58.938 47.619 0.00 0.00 0.00 3.55
2782 3238 3.059597 CGTTTCTGCGATGAAGACTGTTT 60.060 43.478 0.00 0.00 0.00 2.83
2797 3254 8.846211 TGAAGACTGTTTTACTAGAAAATTGGG 58.154 33.333 0.00 0.00 0.00 4.12
2799 3256 8.622948 AGACTGTTTTACTAGAAAATTGGGAG 57.377 34.615 0.00 0.00 0.00 4.30
2801 3258 8.622948 ACTGTTTTACTAGAAAATTGGGAGAG 57.377 34.615 0.00 0.00 0.00 3.20
2802 3259 8.218488 ACTGTTTTACTAGAAAATTGGGAGAGT 58.782 33.333 0.00 0.00 0.00 3.24
2803 3260 8.391075 TGTTTTACTAGAAAATTGGGAGAGTG 57.609 34.615 0.00 0.00 0.00 3.51
2804 3261 7.996644 TGTTTTACTAGAAAATTGGGAGAGTGT 59.003 33.333 0.00 0.00 0.00 3.55
2830 3300 2.092429 TCAGTAGGCTGGGGCAAATTAG 60.092 50.000 0.00 0.00 42.78 1.73
2831 3301 1.215423 AGTAGGCTGGGGCAAATTAGG 59.785 52.381 0.00 0.00 40.87 2.69
2839 3309 2.303175 GGGGCAAATTAGGTCGCATTA 58.697 47.619 0.00 0.00 0.00 1.90
2868 3338 6.727824 AGTTCAATATTTCTGAGGTTGACG 57.272 37.500 0.00 0.00 0.00 4.35
2884 3354 6.785191 AGGTTGACGTCAATATTTAGCAATG 58.215 36.000 31.81 0.00 38.24 2.82
3026 3496 9.699410 AAATCTATCATGAAACATCCAGGTAAA 57.301 29.630 0.00 0.00 0.00 2.01
3062 3532 0.112995 ATGCAGCAAGGGGTTTCAGA 59.887 50.000 0.00 0.00 0.00 3.27
3126 3637 0.390472 GCTCCCTGAACCTGAACTCG 60.390 60.000 0.00 0.00 0.00 4.18
3137 3648 4.866508 ACCTGAACTCGTGATGTTCTTA 57.133 40.909 7.89 0.00 42.86 2.10
3138 3649 5.209818 ACCTGAACTCGTGATGTTCTTAA 57.790 39.130 7.89 0.00 42.86 1.85
3139 3650 5.230942 ACCTGAACTCGTGATGTTCTTAAG 58.769 41.667 0.00 0.00 42.86 1.85
3150 3661 8.737175 TCGTGATGTTCTTAAGTTAGTACAGAT 58.263 33.333 1.63 0.00 30.51 2.90
3157 3670 7.317842 TCTTAAGTTAGTACAGATCGGTGAG 57.682 40.000 8.91 0.00 0.00 3.51
3196 3709 3.441572 CACTGGAGGCCACATAAGAAAAG 59.558 47.826 5.01 0.00 0.00 2.27
3282 3796 2.576191 AGCTATGGTTTGGGACAGCTTA 59.424 45.455 0.00 0.00 42.39 3.09
3290 3804 4.386711 GTTTGGGACAGCTTAACTAGTGT 58.613 43.478 0.00 0.00 42.39 3.55
3292 3806 4.267349 TGGGACAGCTTAACTAGTGTTC 57.733 45.455 0.00 0.00 37.59 3.18
3308 3822 4.655963 AGTGTTCATCATGGTGCTACTTT 58.344 39.130 0.00 0.00 0.00 2.66
3318 3832 3.909430 TGGTGCTACTTTCTGTACTTCG 58.091 45.455 0.00 0.00 0.00 3.79
3329 3843 3.418995 TCTGTACTTCGACCAGTAGCTT 58.581 45.455 0.00 0.00 29.53 3.74
3331 3845 4.082895 TCTGTACTTCGACCAGTAGCTTTC 60.083 45.833 0.00 0.00 29.53 2.62
3336 3850 3.299340 TCGACCAGTAGCTTTCAAGTC 57.701 47.619 0.00 0.00 0.00 3.01
3339 3853 3.553096 CGACCAGTAGCTTTCAAGTCTGT 60.553 47.826 0.00 0.00 0.00 3.41
3342 3856 3.430218 CCAGTAGCTTTCAAGTCTGTTCG 59.570 47.826 0.00 0.00 0.00 3.95
3343 3857 3.430218 CAGTAGCTTTCAAGTCTGTTCGG 59.570 47.826 0.00 0.00 0.00 4.30
3344 3858 2.622064 AGCTTTCAAGTCTGTTCGGT 57.378 45.000 0.00 0.00 0.00 4.69
3345 3859 2.919228 AGCTTTCAAGTCTGTTCGGTT 58.081 42.857 0.00 0.00 0.00 4.44
3346 3860 3.279434 AGCTTTCAAGTCTGTTCGGTTT 58.721 40.909 0.00 0.00 0.00 3.27
3347 3861 4.448210 AGCTTTCAAGTCTGTTCGGTTTA 58.552 39.130 0.00 0.00 0.00 2.01
3350 3864 5.728351 TTTCAAGTCTGTTCGGTTTACTG 57.272 39.130 0.00 0.00 0.00 2.74
3356 3870 3.311596 GTCTGTTCGGTTTACTGCAAACT 59.688 43.478 3.70 0.00 45.01 2.66
3358 3872 4.508861 TCTGTTCGGTTTACTGCAAACTAC 59.491 41.667 3.70 1.74 45.01 2.73
3359 3873 4.444536 TGTTCGGTTTACTGCAAACTACT 58.555 39.130 3.70 0.00 45.01 2.57
3362 3876 4.053295 TCGGTTTACTGCAAACTACTGAC 58.947 43.478 3.70 0.00 45.01 3.51
3370 3884 2.610374 TGCAAACTACTGACGTGAAACC 59.390 45.455 0.00 0.00 0.00 3.27
3372 3886 2.861935 CAAACTACTGACGTGAAACCGT 59.138 45.455 0.00 0.00 45.18 4.83
3374 3888 1.677576 ACTACTGACGTGAAACCGTGA 59.322 47.619 0.00 0.00 41.98 4.35
3376 3890 0.458669 ACTGACGTGAAACCGTGACT 59.541 50.000 0.00 0.00 41.98 3.41
3378 3892 0.593008 TGACGTGAAACCGTGACTCG 60.593 55.000 0.00 0.00 41.98 4.18
3399 3915 1.078918 CTTCACAGCTCCCGCATCA 60.079 57.895 0.00 0.00 39.10 3.07
3434 3950 2.985847 GCGCTGCCTTGGGAAACT 60.986 61.111 0.00 0.00 0.00 2.66
3440 3956 2.517959 CTGCCTTGGGAAACTGAATGA 58.482 47.619 0.00 0.00 0.00 2.57
3441 3957 2.490903 CTGCCTTGGGAAACTGAATGAG 59.509 50.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.027874 ACCATAACTCCATAAGTTCTTTCCA 57.972 36.000 0.00 0.00 45.28 3.53
3 4 9.047947 ACTAGACCATAACTCCATAAGTTCTTT 57.952 33.333 0.00 0.00 45.28 2.52
5 6 7.288158 GGACTAGACCATAACTCCATAAGTTCT 59.712 40.741 6.35 0.00 45.28 3.01
6 7 7.069578 TGGACTAGACCATAACTCCATAAGTTC 59.930 40.741 10.05 0.00 40.06 3.01
7 8 6.901300 TGGACTAGACCATAACTCCATAAGTT 59.099 38.462 10.05 0.00 41.92 2.66
8 9 6.441222 TGGACTAGACCATAACTCCATAAGT 58.559 40.000 10.05 0.00 35.79 2.24
9 10 6.978674 TGGACTAGACCATAACTCCATAAG 57.021 41.667 10.05 0.00 34.77 1.73
10 11 7.622081 TCTTTGGACTAGACCATAACTCCATAA 59.378 37.037 14.81 2.40 39.82 1.90
11 12 7.130099 TCTTTGGACTAGACCATAACTCCATA 58.870 38.462 14.81 0.45 39.82 2.74
12 13 5.964477 TCTTTGGACTAGACCATAACTCCAT 59.036 40.000 14.81 0.00 39.82 3.41
13 14 5.338632 TCTTTGGACTAGACCATAACTCCA 58.661 41.667 14.81 2.58 39.82 3.86
14 15 5.934402 TCTTTGGACTAGACCATAACTCC 57.066 43.478 14.81 0.00 39.82 3.85
15 16 8.095169 TCTTTTCTTTGGACTAGACCATAACTC 58.905 37.037 14.81 0.00 39.82 3.01
16 17 7.878644 GTCTTTTCTTTGGACTAGACCATAACT 59.121 37.037 14.81 0.00 39.82 2.24
17 18 7.148623 CGTCTTTTCTTTGGACTAGACCATAAC 60.149 40.741 14.81 3.85 39.82 1.89
18 19 6.872020 CGTCTTTTCTTTGGACTAGACCATAA 59.128 38.462 14.81 10.64 39.82 1.90
19 20 6.209986 TCGTCTTTTCTTTGGACTAGACCATA 59.790 38.462 14.81 9.28 39.82 2.74
20 21 5.011738 TCGTCTTTTCTTTGGACTAGACCAT 59.988 40.000 14.81 0.00 39.82 3.55
21 22 4.342951 TCGTCTTTTCTTTGGACTAGACCA 59.657 41.667 10.05 10.05 38.24 4.02
22 23 4.879598 TCGTCTTTTCTTTGGACTAGACC 58.120 43.478 4.09 4.09 32.76 3.85
23 24 4.924462 CCTCGTCTTTTCTTTGGACTAGAC 59.076 45.833 0.00 0.00 32.91 2.59
24 25 4.560919 GCCTCGTCTTTTCTTTGGACTAGA 60.561 45.833 0.00 0.00 0.00 2.43
25 26 3.680458 GCCTCGTCTTTTCTTTGGACTAG 59.320 47.826 0.00 0.00 0.00 2.57
26 27 3.323979 AGCCTCGTCTTTTCTTTGGACTA 59.676 43.478 0.00 0.00 0.00 2.59
27 28 2.104963 AGCCTCGTCTTTTCTTTGGACT 59.895 45.455 0.00 0.00 0.00 3.85
28 29 2.495084 AGCCTCGTCTTTTCTTTGGAC 58.505 47.619 0.00 0.00 0.00 4.02
29 30 2.930826 AGCCTCGTCTTTTCTTTGGA 57.069 45.000 0.00 0.00 0.00 3.53
30 31 5.212934 GTTTAAGCCTCGTCTTTTCTTTGG 58.787 41.667 0.00 0.00 0.00 3.28
31 32 5.681543 GTGTTTAAGCCTCGTCTTTTCTTTG 59.318 40.000 0.00 0.00 0.00 2.77
32 33 5.355910 TGTGTTTAAGCCTCGTCTTTTCTTT 59.644 36.000 0.00 0.00 0.00 2.52
33 34 4.879545 TGTGTTTAAGCCTCGTCTTTTCTT 59.120 37.500 0.00 0.00 0.00 2.52
34 35 4.448210 TGTGTTTAAGCCTCGTCTTTTCT 58.552 39.130 0.00 0.00 0.00 2.52
35 36 4.806342 TGTGTTTAAGCCTCGTCTTTTC 57.194 40.909 0.00 0.00 0.00 2.29
36 37 4.497507 GCTTGTGTTTAAGCCTCGTCTTTT 60.498 41.667 0.00 0.00 45.62 2.27
37 38 3.003378 GCTTGTGTTTAAGCCTCGTCTTT 59.997 43.478 0.00 0.00 45.62 2.52
38 39 2.548480 GCTTGTGTTTAAGCCTCGTCTT 59.452 45.455 0.00 0.00 45.62 3.01
39 40 2.143925 GCTTGTGTTTAAGCCTCGTCT 58.856 47.619 0.00 0.00 45.62 4.18
40 41 2.596263 GCTTGTGTTTAAGCCTCGTC 57.404 50.000 0.00 0.00 45.62 4.20
47 48 6.020678 GTGCTAAGTGTTTGCTTGTGTTTAAG 60.021 38.462 0.00 0.00 0.00 1.85
48 49 5.802956 GTGCTAAGTGTTTGCTTGTGTTTAA 59.197 36.000 0.00 0.00 0.00 1.52
49 50 5.124776 AGTGCTAAGTGTTTGCTTGTGTTTA 59.875 36.000 0.00 0.00 0.00 2.01
50 51 4.082245 AGTGCTAAGTGTTTGCTTGTGTTT 60.082 37.500 0.00 0.00 0.00 2.83
51 52 3.443681 AGTGCTAAGTGTTTGCTTGTGTT 59.556 39.130 0.00 0.00 0.00 3.32
52 53 3.016736 AGTGCTAAGTGTTTGCTTGTGT 58.983 40.909 0.00 0.00 0.00 3.72
53 54 3.065233 TCAGTGCTAAGTGTTTGCTTGTG 59.935 43.478 0.00 0.00 0.00 3.33
54 55 3.278574 TCAGTGCTAAGTGTTTGCTTGT 58.721 40.909 0.00 0.00 0.00 3.16
55 56 3.969117 TCAGTGCTAAGTGTTTGCTTG 57.031 42.857 0.00 0.00 0.00 4.01
56 57 4.981806 TTTCAGTGCTAAGTGTTTGCTT 57.018 36.364 0.00 0.00 0.00 3.91
57 58 4.157656 TGTTTTCAGTGCTAAGTGTTTGCT 59.842 37.500 0.00 0.00 0.00 3.91
58 59 4.420168 TGTTTTCAGTGCTAAGTGTTTGC 58.580 39.130 0.00 0.00 0.00 3.68
73 74 5.437060 AGCCTTCTGACTTTACTGTTTTCA 58.563 37.500 0.00 0.00 0.00 2.69
74 75 7.674471 ATAGCCTTCTGACTTTACTGTTTTC 57.326 36.000 0.00 0.00 0.00 2.29
75 76 8.154856 TGTATAGCCTTCTGACTTTACTGTTTT 58.845 33.333 0.00 0.00 0.00 2.43
76 77 7.676947 TGTATAGCCTTCTGACTTTACTGTTT 58.323 34.615 0.00 0.00 0.00 2.83
77 78 7.241042 TGTATAGCCTTCTGACTTTACTGTT 57.759 36.000 0.00 0.00 0.00 3.16
78 79 6.628398 GCTGTATAGCCTTCTGACTTTACTGT 60.628 42.308 0.00 0.00 44.33 3.55
79 80 5.751028 GCTGTATAGCCTTCTGACTTTACTG 59.249 44.000 0.00 0.00 44.33 2.74
80 81 5.908341 GCTGTATAGCCTTCTGACTTTACT 58.092 41.667 0.00 0.00 44.33 2.24
97 98 9.284968 ACTTAGTATGTTTGAGTTTTGCTGTAT 57.715 29.630 0.00 0.00 0.00 2.29
98 99 8.671384 ACTTAGTATGTTTGAGTTTTGCTGTA 57.329 30.769 0.00 0.00 0.00 2.74
99 100 7.568199 ACTTAGTATGTTTGAGTTTTGCTGT 57.432 32.000 0.00 0.00 0.00 4.40
100 101 8.988934 TCTACTTAGTATGTTTGAGTTTTGCTG 58.011 33.333 0.00 0.00 0.00 4.41
101 102 9.726438 ATCTACTTAGTATGTTTGAGTTTTGCT 57.274 29.630 0.00 0.00 0.00 3.91
102 103 9.974750 GATCTACTTAGTATGTTTGAGTTTTGC 57.025 33.333 0.00 0.00 0.00 3.68
153 154 8.309656 GGCCGGTCTATTGTAGTACTAATAATT 58.690 37.037 15.08 0.00 0.00 1.40
154 155 7.362401 CGGCCGGTCTATTGTAGTACTAATAAT 60.362 40.741 20.10 10.77 0.00 1.28
155 156 6.072508 CGGCCGGTCTATTGTAGTACTAATAA 60.073 42.308 20.10 3.85 0.00 1.40
156 157 5.412594 CGGCCGGTCTATTGTAGTACTAATA 59.587 44.000 20.10 1.16 0.00 0.98
157 158 4.217118 CGGCCGGTCTATTGTAGTACTAAT 59.783 45.833 20.10 0.00 0.00 1.73
158 159 3.565482 CGGCCGGTCTATTGTAGTACTAA 59.435 47.826 20.10 0.00 0.00 2.24
159 160 3.141398 CGGCCGGTCTATTGTAGTACTA 58.859 50.000 20.10 0.00 0.00 1.82
160 161 1.952296 CGGCCGGTCTATTGTAGTACT 59.048 52.381 20.10 0.00 0.00 2.73
161 162 1.601412 GCGGCCGGTCTATTGTAGTAC 60.601 57.143 29.38 0.00 0.00 2.73
162 163 0.670162 GCGGCCGGTCTATTGTAGTA 59.330 55.000 29.38 0.00 0.00 1.82
163 164 1.440476 GCGGCCGGTCTATTGTAGT 59.560 57.895 29.38 0.00 0.00 2.73
164 165 1.660575 CGCGGCCGGTCTATTGTAG 60.661 63.158 29.38 0.00 0.00 2.74
165 166 2.414179 CGCGGCCGGTCTATTGTA 59.586 61.111 29.38 0.00 0.00 2.41
181 182 3.602513 AACTGAGAGCTGCAGCCCG 62.603 63.158 34.39 19.67 43.38 6.13
182 183 2.039405 CAACTGAGAGCTGCAGCCC 61.039 63.158 34.39 24.70 43.38 5.19
183 184 0.888285 AACAACTGAGAGCTGCAGCC 60.888 55.000 34.39 24.64 43.38 4.85
184 185 0.950116 AAACAACTGAGAGCTGCAGC 59.050 50.000 31.53 31.53 42.49 5.25
185 186 1.266175 CCAAACAACTGAGAGCTGCAG 59.734 52.381 10.11 10.11 39.26 4.41
186 187 1.311859 CCAAACAACTGAGAGCTGCA 58.688 50.000 1.02 0.00 0.00 4.41
187 188 1.265365 GACCAAACAACTGAGAGCTGC 59.735 52.381 0.00 0.00 0.00 5.25
188 189 1.528586 CGACCAAACAACTGAGAGCTG 59.471 52.381 0.00 0.00 0.00 4.24
189 190 1.541233 CCGACCAAACAACTGAGAGCT 60.541 52.381 0.00 0.00 0.00 4.09
190 191 0.868406 CCGACCAAACAACTGAGAGC 59.132 55.000 0.00 0.00 0.00 4.09
191 192 0.868406 GCCGACCAAACAACTGAGAG 59.132 55.000 0.00 0.00 0.00 3.20
192 193 0.468226 AGCCGACCAAACAACTGAGA 59.532 50.000 0.00 0.00 0.00 3.27
193 194 1.264288 GAAGCCGACCAAACAACTGAG 59.736 52.381 0.00 0.00 0.00 3.35
194 195 1.305201 GAAGCCGACCAAACAACTGA 58.695 50.000 0.00 0.00 0.00 3.41
195 196 0.310854 GGAAGCCGACCAAACAACTG 59.689 55.000 0.00 0.00 0.00 3.16
196 197 0.182775 AGGAAGCCGACCAAACAACT 59.817 50.000 0.00 0.00 0.00 3.16
197 198 1.001706 GAAGGAAGCCGACCAAACAAC 60.002 52.381 0.00 0.00 0.00 3.32
198 199 1.314730 GAAGGAAGCCGACCAAACAA 58.685 50.000 0.00 0.00 0.00 2.83
199 200 0.536460 GGAAGGAAGCCGACCAAACA 60.536 55.000 0.00 0.00 0.00 2.83
200 201 0.250770 AGGAAGGAAGCCGACCAAAC 60.251 55.000 0.00 0.00 0.00 2.93
201 202 0.250727 CAGGAAGGAAGCCGACCAAA 60.251 55.000 0.00 0.00 0.00 3.28
202 203 1.374947 CAGGAAGGAAGCCGACCAA 59.625 57.895 0.00 0.00 0.00 3.67
203 204 2.592993 CCAGGAAGGAAGCCGACCA 61.593 63.158 0.00 0.00 41.22 4.02
204 205 2.269241 CCAGGAAGGAAGCCGACC 59.731 66.667 0.00 0.00 41.22 4.79
205 206 3.388841 TCCAGGAAGGAAGCCGAC 58.611 61.111 0.00 0.00 45.65 4.79
212 213 0.391597 GACAACACGTCCAGGAAGGA 59.608 55.000 7.37 0.00 46.75 3.36
213 214 0.944311 CGACAACACGTCCAGGAAGG 60.944 60.000 7.37 0.00 42.07 3.46
214 215 1.557443 GCGACAACACGTCCAGGAAG 61.557 60.000 0.00 0.00 42.07 3.46
215 216 1.593209 GCGACAACACGTCCAGGAA 60.593 57.895 0.00 0.00 42.07 3.36
216 217 2.028484 GCGACAACACGTCCAGGA 59.972 61.111 0.00 0.00 42.07 3.86
217 218 1.433053 TTTGCGACAACACGTCCAGG 61.433 55.000 0.00 0.00 42.07 4.45
218 219 0.315869 GTTTGCGACAACACGTCCAG 60.316 55.000 0.00 0.00 42.07 3.86
219 220 1.716760 GTTTGCGACAACACGTCCA 59.283 52.632 0.00 0.00 42.07 4.02
220 221 1.367195 CGTTTGCGACAACACGTCC 60.367 57.895 0.00 0.00 42.07 4.79
221 222 0.381428 CTCGTTTGCGACAACACGTC 60.381 55.000 17.18 0.00 42.81 4.34
222 223 1.634225 CTCGTTTGCGACAACACGT 59.366 52.632 17.18 0.00 42.81 4.49
223 224 1.717728 GCTCGTTTGCGACAACACG 60.718 57.895 14.43 14.43 42.81 4.49
224 225 1.368850 GGCTCGTTTGCGACAACAC 60.369 57.895 0.00 0.00 42.81 3.32
225 226 1.522806 AGGCTCGTTTGCGACAACA 60.523 52.632 0.00 0.00 42.81 3.33
226 227 1.082756 CAGGCTCGTTTGCGACAAC 60.083 57.895 0.00 0.00 42.81 3.32
227 228 2.250939 CCAGGCTCGTTTGCGACAA 61.251 57.895 0.00 0.00 42.81 3.18
228 229 2.664851 CCAGGCTCGTTTGCGACA 60.665 61.111 0.00 0.00 42.81 4.35
229 230 2.357034 TCCAGGCTCGTTTGCGAC 60.357 61.111 0.00 0.00 42.81 5.19
230 231 2.357034 GTCCAGGCTCGTTTGCGA 60.357 61.111 0.00 0.00 45.79 5.10
231 232 3.777925 CGTCCAGGCTCGTTTGCG 61.778 66.667 0.00 0.00 39.92 4.85
232 233 2.665185 ACGTCCAGGCTCGTTTGC 60.665 61.111 4.09 0.00 36.93 3.68
233 234 1.300620 TCACGTCCAGGCTCGTTTG 60.301 57.895 6.76 0.00 38.23 2.93
234 235 1.300697 GTCACGTCCAGGCTCGTTT 60.301 57.895 6.76 0.00 38.23 3.60
235 236 2.338984 GTCACGTCCAGGCTCGTT 59.661 61.111 6.76 0.00 38.23 3.85
236 237 4.039357 CGTCACGTCCAGGCTCGT 62.039 66.667 4.09 4.09 40.99 4.18
237 238 3.669036 CTCGTCACGTCCAGGCTCG 62.669 68.421 0.00 2.94 0.00 5.03
238 239 2.179517 CTCGTCACGTCCAGGCTC 59.820 66.667 0.00 0.00 0.00 4.70
330 346 2.606275 CGAAGCTTTATCGGGCCTC 58.394 57.895 0.84 0.00 36.68 4.70
448 539 1.768077 GGTGGGATGGGAGAGGGAG 60.768 68.421 0.00 0.00 0.00 4.30
529 620 0.320508 GTCAACGAGTTGGGAGGGAC 60.321 60.000 14.99 2.46 40.78 4.46
588 679 4.923942 ATGCATGCTCGGGCTCGG 62.924 66.667 20.33 0.00 39.59 4.63
589 680 3.646976 CATGCATGCTCGGGCTCG 61.647 66.667 20.33 0.00 39.59 5.03
690 781 2.763448 AGTAGATCTCAAGGTGGCAGAC 59.237 50.000 0.00 0.00 0.00 3.51
753 844 1.381851 GGGGATGGAGGATGATGGC 59.618 63.158 0.00 0.00 0.00 4.40
807 925 0.675522 GAAAAACTCGATGGCGGGGA 60.676 55.000 0.00 0.00 43.99 4.81
818 936 2.607635 TGCAGTGACTCACGAAAAACTC 59.392 45.455 3.46 0.00 39.64 3.01
824 942 0.464036 AAGGTGCAGTGACTCACGAA 59.536 50.000 3.46 0.00 39.64 3.85
825 943 0.464036 AAAGGTGCAGTGACTCACGA 59.536 50.000 3.46 0.00 39.64 4.35
847 965 0.321671 TTCAGAAGCGGGAACAGAGG 59.678 55.000 0.00 0.00 0.00 3.69
858 976 0.322816 TCCTGGCCACATTCAGAAGC 60.323 55.000 0.00 0.00 33.11 3.86
876 994 3.454375 TGTGGTCGACAAGAGAAACTTC 58.546 45.455 18.91 0.00 36.61 3.01
878 996 3.393800 CATGTGGTCGACAAGAGAAACT 58.606 45.455 18.91 0.00 38.36 2.66
879 997 2.480419 CCATGTGGTCGACAAGAGAAAC 59.520 50.000 18.91 4.21 38.36 2.78
880 998 2.766313 CCATGTGGTCGACAAGAGAAA 58.234 47.619 18.91 0.00 38.36 2.52
918 1036 1.895231 GGACCGACCAACAACCCAC 60.895 63.158 0.00 0.00 38.79 4.61
943 1069 1.172812 GGACCGAACAGGCAAAAGCT 61.173 55.000 0.00 0.00 46.52 3.74
985 1111 0.753262 AGCATGATACGGTCCCAGAC 59.247 55.000 0.00 0.00 0.00 3.51
986 1112 1.040646 GAGCATGATACGGTCCCAGA 58.959 55.000 0.00 0.00 0.00 3.86
987 1113 0.034059 GGAGCATGATACGGTCCCAG 59.966 60.000 0.00 0.00 43.78 4.45
988 1114 2.133195 GGAGCATGATACGGTCCCA 58.867 57.895 0.00 0.00 43.78 4.37
991 1117 0.039074 CTCGGGAGCATGATACGGTC 60.039 60.000 0.00 0.00 0.00 4.79
992 1118 2.041976 CTCGGGAGCATGATACGGT 58.958 57.895 0.00 0.00 0.00 4.83
993 1119 4.974792 CTCGGGAGCATGATACGG 57.025 61.111 0.00 0.00 0.00 4.02
1177 1303 1.151668 CTGTGGAAGAAACCGAGCAG 58.848 55.000 0.00 0.00 0.00 4.24
1254 1410 4.467795 ACCACAGAATAGTCATAGCAGTGT 59.532 41.667 0.00 0.00 0.00 3.55
1258 1426 3.951680 TCGACCACAGAATAGTCATAGCA 59.048 43.478 0.00 0.00 0.00 3.49
1267 1435 0.172578 CGGCAGTCGACCACAGAATA 59.827 55.000 13.01 0.00 42.43 1.75
1305 1473 5.011090 TCTCATCCTCGTCAAAATACCTG 57.989 43.478 0.00 0.00 0.00 4.00
1307 1475 4.571176 GGTTCTCATCCTCGTCAAAATACC 59.429 45.833 0.00 0.00 0.00 2.73
1311 1479 2.611971 CCGGTTCTCATCCTCGTCAAAA 60.612 50.000 0.00 0.00 0.00 2.44
1312 1480 1.067142 CCGGTTCTCATCCTCGTCAAA 60.067 52.381 0.00 0.00 0.00 2.69
1313 1481 0.530744 CCGGTTCTCATCCTCGTCAA 59.469 55.000 0.00 0.00 0.00 3.18
1314 1482 1.945354 GCCGGTTCTCATCCTCGTCA 61.945 60.000 1.90 0.00 0.00 4.35
1331 1499 1.668101 CCAGACGACCAGGTAGAGCC 61.668 65.000 6.72 0.00 37.58 4.70
1334 1502 0.323178 GTCCCAGACGACCAGGTAGA 60.323 60.000 6.72 0.00 0.00 2.59
1385 1553 2.683867 ACACTATCGTAGCTCTGTGGAC 59.316 50.000 0.00 0.00 0.00 4.02
1395 1563 6.575083 CAATCTGTTGGAACACTATCGTAG 57.425 41.667 0.00 0.00 39.29 3.51
1488 1659 2.568956 CTCATGAAGGGTGAGGAAGACA 59.431 50.000 0.00 0.00 39.48 3.41
1554 1725 0.820871 ATGACCGAGAGCTCCAAGTC 59.179 55.000 10.93 14.58 0.00 3.01
1568 1739 0.698818 ACCAAGGTGAAGGGATGACC 59.301 55.000 0.00 0.00 40.67 4.02
1584 1755 4.681744 GCAGTTCATCTTCAAAAACACCA 58.318 39.130 0.00 0.00 0.00 4.17
1588 1759 3.632189 AGCGCAGTTCATCTTCAAAAAC 58.368 40.909 11.47 0.00 0.00 2.43
1640 1811 4.553547 GCACAAAGAGATAATGGATCGCAC 60.554 45.833 0.00 0.00 39.80 5.34
1641 1812 3.561310 GCACAAAGAGATAATGGATCGCA 59.439 43.478 0.00 0.00 39.80 5.10
1652 1823 0.742281 AGCATCGCGCACAAAGAGAT 60.742 50.000 8.75 0.00 46.13 2.75
1670 1841 3.791973 ACTTGAGAATACCAGCGAGAG 57.208 47.619 0.00 0.00 0.00 3.20
1730 1907 1.667154 CTCGACCGGAATCTCCAGCA 61.667 60.000 9.46 0.00 35.91 4.41
1747 1924 3.244044 ACCGGATAGTACTCGTAGTCCTC 60.244 52.174 9.46 0.00 0.00 3.71
1748 1925 2.703007 ACCGGATAGTACTCGTAGTCCT 59.297 50.000 9.46 0.00 0.00 3.85
1749 1926 3.063485 GACCGGATAGTACTCGTAGTCC 58.937 54.545 9.46 0.03 0.00 3.85
1758 1935 2.364324 TGCAATGAGGACCGGATAGTAC 59.636 50.000 9.46 0.00 0.00 2.73
1763 1940 4.963878 GTGCAATGAGGACCGGAT 57.036 55.556 9.46 0.00 31.47 4.18
1785 1962 2.362503 AGCCGACCATCGTCCTCA 60.363 61.111 0.00 0.00 38.40 3.86
1892 2069 5.702670 TGATTCTTGAGGTTGATGACTGTTC 59.297 40.000 0.00 0.00 0.00 3.18
1918 2095 1.471119 TCTGGACGGTCTACATGGAC 58.529 55.000 8.23 0.00 35.66 4.02
1924 2101 0.179108 GGTGCATCTGGACGGTCTAC 60.179 60.000 8.23 0.00 37.24 2.59
1931 2108 0.883833 CCAACTTGGTGCATCTGGAC 59.116 55.000 0.00 0.00 35.50 4.02
1943 2126 1.008538 GAGCCACGCAACCAACTTG 60.009 57.895 0.00 0.00 0.00 3.16
1948 2131 0.323302 TCAATAGAGCCACGCAACCA 59.677 50.000 0.00 0.00 0.00 3.67
1949 2132 1.398390 CTTCAATAGAGCCACGCAACC 59.602 52.381 0.00 0.00 0.00 3.77
1954 2137 1.009829 GTGCCTTCAATAGAGCCACG 58.990 55.000 0.00 0.00 0.00 4.94
1955 2138 1.009829 CGTGCCTTCAATAGAGCCAC 58.990 55.000 0.00 0.00 0.00 5.01
1981 2164 6.363357 GTGCCAAGATCTGTGATTACAAAAAC 59.637 38.462 0.00 0.00 36.14 2.43
2031 2300 0.739813 CGCAACTTAGGGAACGAGGG 60.740 60.000 0.00 0.00 0.00 4.30
2032 2301 0.245539 TCGCAACTTAGGGAACGAGG 59.754 55.000 0.00 0.00 0.00 4.63
2033 2302 1.201647 TCTCGCAACTTAGGGAACGAG 59.798 52.381 3.96 3.96 46.17 4.18
2034 2303 1.250328 TCTCGCAACTTAGGGAACGA 58.750 50.000 0.00 0.00 0.00 3.85
2035 2304 1.993370 CTTCTCGCAACTTAGGGAACG 59.007 52.381 0.00 0.00 0.00 3.95
2036 2305 1.732809 GCTTCTCGCAACTTAGGGAAC 59.267 52.381 0.00 0.00 38.92 3.62
2037 2306 1.623811 AGCTTCTCGCAACTTAGGGAA 59.376 47.619 0.00 0.00 42.61 3.97
2038 2307 1.267121 AGCTTCTCGCAACTTAGGGA 58.733 50.000 0.00 0.00 42.61 4.20
2039 2308 2.961526 TAGCTTCTCGCAACTTAGGG 57.038 50.000 0.00 0.00 42.61 3.53
2040 2309 3.062774 GCTTTAGCTTCTCGCAACTTAGG 59.937 47.826 0.00 0.00 42.61 2.69
2041 2310 4.251960 GCTTTAGCTTCTCGCAACTTAG 57.748 45.455 0.00 0.00 42.61 2.18
2058 2327 5.360591 TCAGAAAACTCTTTCGAGAGCTTT 58.639 37.500 0.00 0.62 44.83 3.51
2065 2334 6.280643 TGTCAGATTCAGAAAACTCTTTCGA 58.719 36.000 0.00 0.00 44.83 3.71
2069 2338 9.646427 GTATACTGTCAGATTCAGAAAACTCTT 57.354 33.333 6.91 0.00 36.81 2.85
2081 2350 5.023452 TGAGGGTGTGTATACTGTCAGATT 58.977 41.667 6.91 0.00 0.00 2.40
2090 2359 2.690840 AGGGGATGAGGGTGTGTATAC 58.309 52.381 0.00 0.00 0.00 1.47
2092 2361 3.655972 ATAGGGGATGAGGGTGTGTAT 57.344 47.619 0.00 0.00 0.00 2.29
2097 2369 3.395941 AGCTTAAATAGGGGATGAGGGTG 59.604 47.826 0.00 0.00 0.00 4.61
2104 2382 7.873195 AGACTGTAAAAGCTTAAATAGGGGAT 58.127 34.615 0.00 0.00 0.00 3.85
2106 2384 7.498239 GGTAGACTGTAAAAGCTTAAATAGGGG 59.502 40.741 0.00 0.00 0.00 4.79
2146 2433 7.865706 AGAACACATATGGATGGAAGTAAAC 57.134 36.000 7.80 0.00 37.39 2.01
2214 2596 0.407528 TGCCCCTGCCAGAATTGTAA 59.592 50.000 0.00 0.00 36.33 2.41
2222 2604 0.034186 TCTATTTGTGCCCCTGCCAG 60.034 55.000 0.00 0.00 36.33 4.85
2229 2611 3.421844 ACCAGTTTCTCTATTTGTGCCC 58.578 45.455 0.00 0.00 0.00 5.36
2250 2632 3.250762 CGTTTCACTTGCTCCTGAATCAA 59.749 43.478 0.00 0.00 0.00 2.57
2251 2633 2.807967 CGTTTCACTTGCTCCTGAATCA 59.192 45.455 0.00 0.00 0.00 2.57
2262 2644 2.250939 TCGCTGCCCGTTTCACTTG 61.251 57.895 0.00 0.00 38.35 3.16
2264 2646 2.665185 GTCGCTGCCCGTTTCACT 60.665 61.111 0.00 0.00 38.35 3.41
2272 2654 2.125106 AATTCCTCGTCGCTGCCC 60.125 61.111 0.00 0.00 0.00 5.36
2289 2674 0.473694 TCCAGCCTCACTTTCTCCCA 60.474 55.000 0.00 0.00 0.00 4.37
2290 2675 0.693049 TTCCAGCCTCACTTTCTCCC 59.307 55.000 0.00 0.00 0.00 4.30
2360 2750 3.771577 TCCTGTTTCACTTTCTCCTCC 57.228 47.619 0.00 0.00 0.00 4.30
2361 2751 3.500299 GCTTCCTGTTTCACTTTCTCCTC 59.500 47.826 0.00 0.00 0.00 3.71
2375 2765 2.259818 CTCGTCGCTGCTTCCTGT 59.740 61.111 0.00 0.00 0.00 4.00
2377 2767 1.608717 ATTCCTCGTCGCTGCTTCCT 61.609 55.000 0.00 0.00 0.00 3.36
2389 2779 1.476891 TCACTTTCTCCCGATTCCTCG 59.523 52.381 0.00 0.00 44.62 4.63
2393 2783 2.675348 CAGCTTCACTTTCTCCCGATTC 59.325 50.000 0.00 0.00 0.00 2.52
2395 2785 1.065854 CCAGCTTCACTTTCTCCCGAT 60.066 52.381 0.00 0.00 0.00 4.18
2398 2788 2.155279 GTTCCAGCTTCACTTTCTCCC 58.845 52.381 0.00 0.00 0.00 4.30
2501 2947 5.978322 GCGAAAACCAATACCAAAACAGTAA 59.022 36.000 0.00 0.00 0.00 2.24
2575 3023 3.379372 GTGAGGATAATGCTTGCACACAT 59.621 43.478 0.00 0.00 0.00 3.21
2576 3024 2.749076 GTGAGGATAATGCTTGCACACA 59.251 45.455 0.00 0.00 0.00 3.72
2577 3025 2.749076 TGTGAGGATAATGCTTGCACAC 59.251 45.455 0.00 0.67 30.73 3.82
2578 3026 3.011818 CTGTGAGGATAATGCTTGCACA 58.988 45.455 0.00 0.00 34.15 4.57
2583 3038 4.343526 ACGAGATCTGTGAGGATAATGCTT 59.656 41.667 0.00 0.00 0.00 3.91
2590 3045 1.313772 CGGACGAGATCTGTGAGGAT 58.686 55.000 0.00 0.00 0.00 3.24
2596 3051 1.323271 ATGCACCGGACGAGATCTGT 61.323 55.000 9.46 0.00 30.80 3.41
2616 3071 9.189156 ACTGGAAACAAACAGCACATATATAAT 57.811 29.630 0.00 0.00 42.06 1.28
2617 3072 8.574251 ACTGGAAACAAACAGCACATATATAA 57.426 30.769 0.00 0.00 42.06 0.98
2618 3073 9.845740 ATACTGGAAACAAACAGCACATATATA 57.154 29.630 0.00 0.00 42.06 0.86
2619 3074 8.752005 ATACTGGAAACAAACAGCACATATAT 57.248 30.769 0.00 0.00 42.06 0.86
2620 3075 8.458052 CAATACTGGAAACAAACAGCACATATA 58.542 33.333 0.00 0.00 42.06 0.86
2621 3076 7.315142 CAATACTGGAAACAAACAGCACATAT 58.685 34.615 0.00 0.00 42.06 1.78
2658 3113 9.911788 AGCTTGCCAATAATATATATAGTTGCT 57.088 29.630 0.00 0.00 0.00 3.91
2694 3150 5.014755 ACCTGGATGTTTCATGGGTAAGTTA 59.985 40.000 0.00 0.00 0.00 2.24
2701 3157 2.291153 ACAGACCTGGATGTTTCATGGG 60.291 50.000 0.00 0.00 34.19 4.00
2737 3193 5.811613 CGTTACTGAAATCGTAATACCCCAA 59.188 40.000 0.00 0.00 0.00 4.12
2742 3198 7.629845 GCAGAAACGTTACTGAAATCGTAATAC 59.370 37.037 0.00 0.00 36.38 1.89
2748 3204 3.120616 TCGCAGAAACGTTACTGAAATCG 59.879 43.478 0.00 0.00 36.38 3.34
2749 3205 4.640805 TCGCAGAAACGTTACTGAAATC 57.359 40.909 0.00 0.00 36.38 2.17
2752 3208 3.644823 TCATCGCAGAAACGTTACTGAA 58.355 40.909 0.00 0.00 43.58 3.02
2753 3209 3.291809 TCATCGCAGAAACGTTACTGA 57.708 42.857 0.00 0.00 43.58 3.41
2761 3217 4.474226 AAACAGTCTTCATCGCAGAAAC 57.526 40.909 0.00 0.00 43.58 2.78
2773 3229 8.990163 TCCCAATTTTCTAGTAAAACAGTCTT 57.010 30.769 0.00 0.00 0.00 3.01
2774 3230 8.437575 TCTCCCAATTTTCTAGTAAAACAGTCT 58.562 33.333 0.00 0.00 0.00 3.24
2780 3236 8.990163 AACACTCTCCCAATTTTCTAGTAAAA 57.010 30.769 0.00 1.35 0.00 1.52
2782 3238 8.877195 AGTAACACTCTCCCAATTTTCTAGTAA 58.123 33.333 0.00 0.00 0.00 2.24
2830 3300 9.730420 AAATATTGAACTAACAATAATGCGACC 57.270 29.630 0.00 0.00 43.05 4.79
2868 3338 9.585099 TGAACATTTCCATTGCTAAATATTGAC 57.415 29.630 0.00 0.00 0.00 3.18
2884 3354 8.925700 GTGACAAAGGATAAAATGAACATTTCC 58.074 33.333 12.20 9.94 39.88 3.13
3041 3511 1.079612 GAAACCCCTTGCTGCATGC 60.080 57.895 11.82 11.82 43.25 4.06
3042 3512 0.245539 CTGAAACCCCTTGCTGCATG 59.754 55.000 1.84 5.77 0.00 4.06
3043 3513 0.112995 TCTGAAACCCCTTGCTGCAT 59.887 50.000 1.84 0.00 0.00 3.96
3051 3521 2.852449 TGGCAAGATATCTGAAACCCCT 59.148 45.455 5.86 0.00 0.00 4.79
3062 3532 6.708885 TGGGAAGATATTCTGGCAAGATAT 57.291 37.500 0.00 2.85 30.72 1.63
3126 3637 9.011407 CGATCTGTACTAACTTAAGAACATCAC 57.989 37.037 10.09 0.73 0.00 3.06
3137 3648 3.130693 GCCTCACCGATCTGTACTAACTT 59.869 47.826 0.00 0.00 0.00 2.66
3138 3649 2.688958 GCCTCACCGATCTGTACTAACT 59.311 50.000 0.00 0.00 0.00 2.24
3139 3650 2.223758 GGCCTCACCGATCTGTACTAAC 60.224 54.545 0.00 0.00 0.00 2.34
3185 3698 8.107095 TGGTTGTAGGATAAGCTTTTCTTATGT 58.893 33.333 15.27 0.88 45.45 2.29
3196 3709 2.939103 CAGCAGTGGTTGTAGGATAAGC 59.061 50.000 0.00 0.00 0.00 3.09
3282 3796 4.292186 AGCACCATGATGAACACTAGTT 57.708 40.909 0.00 0.00 41.64 2.24
3290 3804 4.910195 ACAGAAAGTAGCACCATGATGAA 58.090 39.130 0.00 0.00 0.00 2.57
3292 3806 5.423015 AGTACAGAAAGTAGCACCATGATG 58.577 41.667 0.00 0.00 32.19 3.07
3308 3822 3.069079 AGCTACTGGTCGAAGTACAGA 57.931 47.619 12.71 0.00 36.53 3.41
3318 3832 3.996480 ACAGACTTGAAAGCTACTGGTC 58.004 45.455 13.19 0.00 32.96 4.02
3329 3843 3.558418 GCAGTAAACCGAACAGACTTGAA 59.442 43.478 0.00 0.00 0.00 2.69
3331 3845 2.869801 TGCAGTAAACCGAACAGACTTG 59.130 45.455 0.00 0.00 0.00 3.16
3344 3858 4.684877 TCACGTCAGTAGTTTGCAGTAAA 58.315 39.130 0.00 0.00 0.00 2.01
3345 3859 4.310357 TCACGTCAGTAGTTTGCAGTAA 57.690 40.909 0.00 0.00 0.00 2.24
3346 3860 3.994204 TCACGTCAGTAGTTTGCAGTA 57.006 42.857 0.00 0.00 0.00 2.74
3347 3861 2.882927 TCACGTCAGTAGTTTGCAGT 57.117 45.000 0.00 0.00 0.00 4.40
3350 3864 2.348218 CGGTTTCACGTCAGTAGTTTGC 60.348 50.000 0.00 0.00 0.00 3.68
3356 3870 1.677576 AGTCACGGTTTCACGTCAGTA 59.322 47.619 0.00 0.00 46.75 2.74
3358 3872 1.129326 GAGTCACGGTTTCACGTCAG 58.871 55.000 0.00 0.00 46.75 3.51
3359 3873 0.593008 CGAGTCACGGTTTCACGTCA 60.593 55.000 0.00 0.00 46.75 4.35
3370 3884 1.734477 CTGTGAAGGCCGAGTCACG 60.734 63.158 23.61 17.26 45.83 4.35
3372 3886 2.159819 GAGCTGTGAAGGCCGAGTCA 62.160 60.000 0.00 0.00 0.00 3.41
3374 3888 2.659610 GAGCTGTGAAGGCCGAGT 59.340 61.111 0.00 0.00 0.00 4.18
3376 3890 3.706373 GGGAGCTGTGAAGGCCGA 61.706 66.667 0.00 0.00 0.00 5.54
3427 3943 4.010349 ACCGAATTCTCATTCAGTTTCCC 58.990 43.478 3.52 0.00 39.14 3.97
3434 3950 7.860373 CAGTTTTGTAAACCGAATTCTCATTCA 59.140 33.333 3.52 0.00 39.14 2.57
3440 3956 5.591067 TGGTCAGTTTTGTAAACCGAATTCT 59.409 36.000 3.52 0.00 32.50 2.40
3441 3957 5.823353 TGGTCAGTTTTGTAAACCGAATTC 58.177 37.500 0.00 0.00 32.50 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.