AutoCloner

Multiple sequence alignment - TraesCS1B01G390300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G390300	chr1B	100.000	2462	0	0	1	2462	623913993	623916454	0.000000e+00	4547.0
1	TraesCS1B01G390300	chr1B	90.115	1649	98	25	1	1606	623831933	623833559	0.000000e+00	2082.0
2	TraesCS1B01G390300	chr1B	83.333	534	49	18	827	1348	623822491	623822996	8.020000e-125	457.0
3	TraesCS1B01G390300	chr1B	85.175	371	49	1	984	1348	623885304	623885674	2.310000e-100	375.0
4	TraesCS1B01G390300	chr1A	90.978	1718	85	19	1	1656	548404094	548405803	0.000000e+00	2250.0
5	TraesCS1B01G390300	chr1A	82.481	645	83	17	1830	2456	548407503	548408135	2.790000e-149	538.0
6	TraesCS1B01G390300	chr1A	85.075	268	37	3	386	651	521672981	521673247	1.120000e-68	270.0
7	TraesCS1B01G390300	chr1A	91.579	190	15	1	1652	1840	548405838	548406027	6.750000e-66	261.0
8	TraesCS1B01G390300	chr1A	83.621	116	16	3	388	502	189955336	189955223	3.350000e-19	106.0
9	TraesCS1B01G390300	chr1D	89.671	1704	110	31	2	1656	453404341	453406027	0.000000e+00	2111.0
10	TraesCS1B01G390300	chr1D	89.757	1689	103	25	5	1656	453475626	453477281	0.000000e+00	2097.0
11	TraesCS1B01G390300	chr1D	84.856	832	80	14	1652	2455	453477316	453478129	0.000000e+00	797.0
12	TraesCS1B01G390300	chr1D	82.070	541	50	21	827	1348	453347566	453348078	3.790000e-113	418.0
13	TraesCS1B01G390300	chr1D	90.213	235	17	4	1652	1880	453406062	453406296	3.980000e-78	302.0
14	TraesCS1B01G390300	chr1D	76.838	272	48	11	388	651	31695807	31695543	3.300000e-29	139.0
15	TraesCS1B01G390300	chr5B	80.723	249	38	9	389	636	683107877	683108116	4.180000e-43	185.0
16	TraesCS1B01G390300	chr4D	81.592	201	36	1	2038	2238	391016949	391016750	5.450000e-37	165.0
17	TraesCS1B01G390300	chrUn	79.464	224	42	3	2048	2268	339063866	339064088	3.280000e-34	156.0
18	TraesCS1B01G390300	chr3A	79.464	224	42	3	2048	2268	738505601	738505379	3.280000e-34	156.0
19	TraesCS1B01G390300	chr3A	79.464	224	42	3	2048	2268	738601934	738601712	3.280000e-34	156.0
20	TraesCS1B01G390300	chr3A	79.018	224	43	3	2048	2268	738680900	738680678	1.530000e-32	150.0
21	TraesCS1B01G390300	chr3A	75.000	216	45	9	37	248	121233660	121233870	9.380000e-15	91.6
22	TraesCS1B01G390300	chr7B	76.735	245	41	10	395	633	293974465	293974699	3.320000e-24	122.0
23	TraesCS1B01G390300	chr6B	80.128	156	31	0	2038	2193	191537949	191538104	1.550000e-22	117.0
24	TraesCS1B01G390300	chr2D	78.075	187	37	3	2061	2245	485751557	485751373	5.560000e-22	115.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G390300	chr1B	623913993	623916454	2461	False	4547.000000	4547	100.0000	1	2462	1	chr1B.!!$F4	2461
1	TraesCS1B01G390300	chr1B	623831933	623833559	1626	False	2082.000000	2082	90.1150	1	1606	1	chr1B.!!$F2	1605
2	TraesCS1B01G390300	chr1B	623822491	623822996	505	False	457.000000	457	83.3330	827	1348	1	chr1B.!!$F1	521
3	TraesCS1B01G390300	chr1A	548404094	548408135	4041	False	1016.333333	2250	88.3460	1	2456	3	chr1A.!!$F2	2455
4	TraesCS1B01G390300	chr1D	453475626	453478129	2503	False	1447.000000	2097	87.3065	5	2455	2	chr1D.!!$F3	2450
5	TraesCS1B01G390300	chr1D	453404341	453406296	1955	False	1206.500000	2111	89.9420	2	1880	2	chr1D.!!$F2	1878
6	TraesCS1B01G390300	chr1D	453347566	453348078	512	False	418.000000	418	82.0700	827	1348	1	chr1D.!!$F1	521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
91	92	0.037605	TCTTTCGCCGAGTCCCTTTC	60.038	55.0	0.0	0.0	0.0	2.62	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2019	3676	0.322648	CCGACGGTAGGAAAAGGGTT	59.677	55.0	5.48	0.0	0.0	4.11	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
91	92	0.037605	TCTTTCGCCGAGTCCCTTTC	60.038	55.000	0.00	0.00	0.00	2.62
128	131	3.441496	ACGTCGAAGTTTGGTGAGTTA	57.559	42.857	0.00	0.00	0.00	2.24
133	136	1.193874	GAAGTTTGGTGAGTTACGCGG	59.806	52.381	12.47	0.00	0.00	6.46
134	137	0.105408	AGTTTGGTGAGTTACGCGGT	59.895	50.000	12.47	0.00	0.00	5.68
165	168	7.505585	TCAAGTCCAATTATCAAGAAACTTGGT	59.494	33.333	10.84	7.02	41.50	3.67
177	180	6.708949	TCAAGAAACTTGGTAGACACATTACC	59.291	38.462	10.84	0.00	40.80	2.85
289	292	2.289694	ACCTCAGCGCTTACATCAAGTT	60.290	45.455	7.50	0.00	36.55	2.66
301	304	6.256757	GCTTACATCAAGTTCTAGGATGACAC	59.743	42.308	15.99	4.79	40.61	3.67
307	310	7.437713	TCAAGTTCTAGGATGACACCATATT	57.562	36.000	0.00	0.00	32.09	1.28
323	326	6.151691	CACCATATTTGACCTCACTGTTTTG	58.848	40.000	0.00	0.00	0.00	2.44
402	405	5.382616	TCTAATATCTACTTGCTCCGTCCA	58.617	41.667	0.00	0.00	0.00	4.02
408	411	1.006102	CTTGCTCCGTCCACGAGTT	60.006	57.895	0.00	0.00	43.02	3.01
421	424	5.163824	CGTCCACGAGTTAGTGTACATCTAA	60.164	44.000	0.00	6.35	43.02	2.10
530	533	8.704668	ACTGGATCCTTTTTGAAATGTACTTTT	58.295	29.630	14.23	6.45	0.00	2.27
644	671	1.001068	TGCACTTATTCACGGACGGAA	59.999	47.619	0.00	0.00	0.00	4.30
722	757	3.190744	CCTCGTACTGAGCTTGTCAACTA	59.809	47.826	8.61	0.00	43.82	2.24
738	773	7.136822	TGTCAACTAGGTGCATAGGATTAAT	57.863	36.000	1.76	0.00	0.00	1.40
745	780	9.769677	ACTAGGTGCATAGGATTAATACTATCA	57.230	33.333	16.13	13.87	31.54	2.15
796	831	4.959839	TCATGTGGTGTAGTAATGGCTAGA	59.040	41.667	0.00	0.00	0.00	2.43
920	970	2.025156	CATGCATCGAAAGCCGGC	59.975	61.111	21.89	21.89	39.14	6.13
950	1000	2.869192	GCAAGTAGCTAGCAACTCATCC	59.131	50.000	18.83	0.00	41.15	3.51
969	1019	5.734634	TCATCCATCCATCCATCCATCTATT	59.265	40.000	0.00	0.00	0.00	1.73
970	1020	6.218938	TCATCCATCCATCCATCCATCTATTT	59.781	38.462	0.00	0.00	0.00	1.40
972	1022	6.962182	TCCATCCATCCATCCATCTATTTAC	58.038	40.000	0.00	0.00	0.00	2.01
973	1023	5.819379	CCATCCATCCATCCATCTATTTACG	59.181	44.000	0.00	0.00	0.00	3.18
974	1024	6.352137	CCATCCATCCATCCATCTATTTACGA	60.352	42.308	0.00	0.00	0.00	3.43
975	1025	6.286240	TCCATCCATCCATCTATTTACGAG	57.714	41.667	0.00	0.00	0.00	4.18
976	1026	4.872691	CCATCCATCCATCTATTTACGAGC	59.127	45.833	0.00	0.00	0.00	5.03
1023	1105	2.861006	GCAACGAAACTCGCCCTC	59.139	61.111	0.00	0.00	45.12	4.30
1032	1114	1.668101	AACTCGCCCTCGTCATCCTC	61.668	60.000	0.00	0.00	36.96	3.71
1057	1139	3.706373	CCACGGTAGCCTGCACCT	61.706	66.667	8.43	0.00	33.62	4.00
1097	1185	2.605818	TGTGTGACTACGAGTTTGTTGC	59.394	45.455	0.00	0.00	0.00	4.17
1140	1228	1.142748	GGGCACGGACTCAGATCTG	59.857	63.158	17.07	17.07	0.00	2.90
1350	1445	4.047059	TGCCGTTCCGTCGACCTC	62.047	66.667	10.58	0.00	0.00	3.85
1490	1587	1.078214	CCATGCATGACCAGGACGT	60.078	57.895	28.31	0.00	0.00	4.34
1546	1658	2.824489	TTTGTGGCCGCGTGTGAA	60.824	55.556	12.58	0.00	0.00	3.18
1564	1676	6.290851	CGTGTGAATGTTTTGTTTAGTTTCCG	60.291	38.462	0.00	0.00	0.00	4.30
1615	1727	3.450096	TGTATCTTGTCATCAGCAGCTCT	59.550	43.478	0.00	0.00	0.00	4.09
1617	1729	1.135170	TCTTGTCATCAGCAGCTCTCG	60.135	52.381	0.00	0.00	0.00	4.04
1682	1835	5.398603	TCCATCACTGTTGTGTTTGTTTT	57.601	34.783	0.00	0.00	44.14	2.43
1721	1874	2.891191	AAAATAAGACCCCGCCTTCA	57.109	45.000	0.00	0.00	0.00	3.02
1734	1890	6.130569	ACCCCGCCTTCATGTTTAATTTATA	58.869	36.000	0.00	0.00	0.00	0.98
1763	1919	2.229543	GCTCATTGTTTGCTGTCCATCA	59.770	45.455	0.00	0.00	0.00	3.07
1840	3485	3.919216	TCCAGTTTTGTGTTTGGTGTTG	58.081	40.909	0.00	0.00	32.51	3.33
1883	3528	2.464582	GGAAACAGTCCCTGGAGGT	58.535	57.895	0.00	0.00	41.10	3.85
1884	3529	0.771755	GGAAACAGTCCCTGGAGGTT	59.228	55.000	0.00	0.00	41.10	3.50
1885	3530	1.545651	GGAAACAGTCCCTGGAGGTTG	60.546	57.143	0.00	0.00	41.10	3.77
1887	3532	1.059913	AACAGTCCCTGGAGGTTGAG	58.940	55.000	0.00	0.00	35.51	3.02
1888	3533	0.191064	ACAGTCCCTGGAGGTTGAGA	59.809	55.000	0.00	0.00	35.51	3.27
1928	3582	2.203480	TCCCTGCAAGCCAACACC	60.203	61.111	0.00	0.00	0.00	4.16
1931	3585	2.620112	CCTGCAAGCCAACACCTCG	61.620	63.158	0.00	0.00	0.00	4.63
1972	3626	1.546961	TGGTGTTTTGACCCGTTTGT	58.453	45.000	0.00	0.00	34.79	2.83
1991	3645	4.090761	TGTGAAAGTTCAGCCAGATCTT	57.909	40.909	0.00	0.00	37.98	2.40
1994	3648	4.393371	GTGAAAGTTCAGCCAGATCTTACC	59.607	45.833	0.00	0.00	37.98	2.85
2009	3663	5.880887	AGATCTTACCCTGGTTCGATTTTTC	59.119	40.000	0.00	0.00	0.00	2.29
2032	3689	6.637657	TCTCGAGATTTAACCCTTTTCCTAC	58.362	40.000	12.08	0.00	0.00	3.18
2068	3741	1.536907	TACCGCCAAGACCCTTGGA	60.537	57.895	25.13	5.52	42.06	3.53
2081	3754	1.338136	CCTTGGAGGTAGGGTCGCAT	61.338	60.000	0.00	0.00	0.00	4.73
2085	3758	2.365635	AGGTAGGGTCGCATGCCT	60.366	61.111	13.15	5.73	0.00	4.75
2092	3765	0.107831	GGGTCGCATGCCTTACCATA	59.892	55.000	24.82	0.00	33.46	2.74
2135	3809	2.102438	GCGTTTGTACCCGCCTACC	61.102	63.158	9.69	0.00	43.96	3.18
2147	3821	2.990479	CCTACCACCAGGCACCTC	59.010	66.667	0.00	0.00	39.06	3.85
2149	3823	1.982395	CTACCACCAGGCACCTCGA	60.982	63.158	0.00	0.00	39.06	4.04
2151	3825	3.625897	CCACCAGGCACCTCGACA	61.626	66.667	0.00	0.00	0.00	4.35
2156	3830	1.153745	CAGGCACCTCGACAGTAGC	60.154	63.158	0.00	0.00	0.00	3.58
2227	3901	0.179094	CGCCGATAAGTTGCCTACCA	60.179	55.000	0.00	0.00	0.00	3.25
2229	3903	1.134491	GCCGATAAGTTGCCTACCACT	60.134	52.381	0.00	0.00	0.00	4.00
2239	3913	1.697082	GCCTACCACTAGGGGCCTTC	61.697	65.000	12.22	0.00	40.26	3.46
2245	3919	4.222847	CTAGGGGCCTTCGCGGTC	62.223	72.222	6.13	0.00	36.34	4.79
2268	3942	2.901839	ACCGGTATAACCTATCGCCATT	59.098	45.455	4.49	0.00	35.66	3.16
2269	3943	3.056322	ACCGGTATAACCTATCGCCATTC	60.056	47.826	4.49	0.00	35.66	2.67
2318	3993	6.986231	CCAAGGTCAAATCTGCTTTAACTTTT	59.014	34.615	0.00	0.00	0.00	2.27
2351	4026	1.923356	ACACCAAATTAGGCCACCTG	58.077	50.000	5.01	0.00	34.61	4.00
2437	4112	1.746220	ACACAACGCTTACTGCCAAAA	59.254	42.857	0.00	0.00	38.78	2.44
2458	4133	4.948341	AAAAGTACCCGAATTTTTGCCT	57.052	36.364	0.00	0.00	0.00	4.75
2459	4134	4.514781	AAAGTACCCGAATTTTTGCCTC	57.485	40.909	0.00	0.00	0.00	4.70
2460	4135	3.434940	AGTACCCGAATTTTTGCCTCT	57.565	42.857	0.00	0.00	0.00	3.69
2461	4136	3.081804	AGTACCCGAATTTTTGCCTCTG	58.918	45.455	0.00	0.00	0.00	3.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	0.037590	TAAACTTGCCGGTGCCTGAT	59.962	50.000	1.90	0.00	36.33	2.90
21	22	2.745821	GAGTTCCGCCCGAAATAAACTT	59.254	45.455	0.00	0.00	30.39	2.66
91	92	1.021390	CGTTTGCCTAGTGCCAGGAG	61.021	60.000	0.00	0.00	38.00	3.69
122	125	1.237533	TGACAGTACCGCGTAACTCA	58.762	50.000	4.92	0.75	0.00	3.41
128	131	1.288127	GGACTTGACAGTACCGCGT	59.712	57.895	4.92	0.00	31.22	6.01
133	136	8.547967	TTCTTGATAATTGGACTTGACAGTAC	57.452	34.615	0.00	0.00	33.80	2.73
134	137	8.999431	GTTTCTTGATAATTGGACTTGACAGTA	58.001	33.333	0.00	0.00	31.22	2.74
165	168	2.019249	CTCGACGGGGTAATGTGTCTA	58.981	52.381	0.00	0.00	0.00	2.59
177	180	4.271816	CATCGGGAGCTCGACGGG	62.272	72.222	23.48	15.02	42.21	5.28
289	292	5.905331	AGGTCAAATATGGTGTCATCCTAGA	59.095	40.000	0.00	0.00	34.96	2.43
301	304	5.476599	TCCAAAACAGTGAGGTCAAATATGG	59.523	40.000	0.00	0.00	0.00	2.74
307	310	3.358111	TGTCCAAAACAGTGAGGTCAA	57.642	42.857	0.00	0.00	32.81	3.18
462	465	5.824904	ACATGCTGCTACTTTTCCTTATG	57.175	39.130	0.00	0.00	0.00	1.90
466	469	4.878397	GTCATACATGCTGCTACTTTTCCT	59.122	41.667	0.00	0.00	0.00	3.36
507	510	8.887036	ACAAAAGTACATTTCAAAAAGGATCC	57.113	30.769	2.48	2.48	0.00	3.36
644	671	6.037610	CGAATTTGCTTCTTTCCTATACTGCT	59.962	38.462	0.00	0.00	0.00	4.24
722	757	8.043710	GCTTGATAGTATTAATCCTATGCACCT	58.956	37.037	5.36	0.00	0.00	4.00
760	795	4.710375	ACACCACATGAACCTAGTACCTAG	59.290	45.833	0.00	0.00	34.16	3.02
761	796	4.680407	ACACCACATGAACCTAGTACCTA	58.320	43.478	0.00	0.00	0.00	3.08
762	797	3.517612	ACACCACATGAACCTAGTACCT	58.482	45.455	0.00	0.00	0.00	3.08
763	798	3.975168	ACACCACATGAACCTAGTACC	57.025	47.619	0.00	0.00	0.00	3.34
764	799	5.656213	ACTACACCACATGAACCTAGTAC	57.344	43.478	0.00	0.00	0.00	2.73
765	800	7.147794	CCATTACTACACCACATGAACCTAGTA	60.148	40.741	0.00	0.00	0.00	1.82
766	801	6.351881	CCATTACTACACCACATGAACCTAGT	60.352	42.308	0.00	0.29	0.00	2.57
796	831	6.092259	GCTGACTTTTACCATCTATCACGTTT	59.908	38.462	0.00	0.00	0.00	3.60
920	970	2.397252	GCTACTTGCGCTTGCTCG	59.603	61.111	9.73	0.00	40.12	5.03
950	1000	6.643388	TCGTAAATAGATGGATGGATGGATG	58.357	40.000	0.00	0.00	0.00	3.51
969	1019	2.810650	GCTAGCTAGCTTTGCTCGTAA	58.189	47.619	33.71	0.00	45.62	3.18
970	1020	2.493713	GCTAGCTAGCTTTGCTCGTA	57.506	50.000	33.71	0.24	45.62	3.43
1042	1124	4.394712	GCAGGTGCAGGCTACCGT	62.395	66.667	0.85	0.00	43.06	4.83
1057	1139	2.441717	TTGCACCTGGCTGTTGCA	60.442	55.556	12.35	12.35	45.15	4.08
1097	1185	4.158384	CCAATTTTCATTGAACGTCGAGG	58.842	43.478	3.03	3.03	42.35	4.63
1350	1445	1.303091	CCCCGTTCCGCTTTACCAAG	61.303	60.000	0.00	0.00	0.00	3.61
1390	1485	4.849813	TCACCCACTGATTGAAGATGAT	57.150	40.909	0.00	0.00	0.00	2.45
1395	1490	3.187227	CGTCTTTCACCCACTGATTGAAG	59.813	47.826	0.00	0.00	31.11	3.02
1428	1523	2.822255	TGCGCCGGCTTGTATTCC	60.822	61.111	26.68	2.74	40.82	3.01
1546	1658	7.490079	GGAAGAAACGGAAACTAAACAAAACAT	59.510	33.333	0.00	0.00	0.00	2.71
1564	1676	2.041115	GGGAGCTGCCGGAAGAAAC	61.041	63.158	15.89	2.75	37.63	2.78
1615	1727	2.068519	CAAGACACAGCTTATGCACGA	58.931	47.619	3.16	0.00	42.74	4.35
1617	1729	2.807967	TGACAAGACACAGCTTATGCAC	59.192	45.455	3.16	0.00	42.74	4.57
1876	3521	2.353605	GCTCTCAAGTCTCAACCTCCAG	60.354	54.545	0.00	0.00	0.00	3.86
1881	3526	2.550830	TTGGCTCTCAAGTCTCAACC	57.449	50.000	0.00	0.00	0.00	3.77
1882	3527	3.733337	TCTTTGGCTCTCAAGTCTCAAC	58.267	45.455	0.00	0.00	36.62	3.18
1883	3528	4.422073	TTCTTTGGCTCTCAAGTCTCAA	57.578	40.909	0.00	0.00	36.62	3.02
1884	3529	4.384056	CTTTCTTTGGCTCTCAAGTCTCA	58.616	43.478	0.00	0.00	36.62	3.27
1885	3530	3.750652	CCTTTCTTTGGCTCTCAAGTCTC	59.249	47.826	0.00	0.00	36.62	3.36
1887	3532	3.500299	GTCCTTTCTTTGGCTCTCAAGTC	59.500	47.826	0.00	0.00	36.62	3.01
1888	3533	3.481453	GTCCTTTCTTTGGCTCTCAAGT	58.519	45.455	0.00	0.00	36.62	3.16
1919	3573	1.227853	GGTTCACGAGGTGTTGGCT	60.228	57.895	0.00	0.00	34.79	4.75
1928	3582	1.301716	CCCACCACAGGTTCACGAG	60.302	63.158	0.00	0.00	31.02	4.18
1931	3585	1.040339	TTTGCCCACCACAGGTTCAC	61.040	55.000	0.00	0.00	31.02	3.18
1972	3626	4.565652	GGGTAAGATCTGGCTGAACTTTCA	60.566	45.833	19.04	3.18	38.49	2.69
1991	3645	3.592059	CGAGAAAAATCGAACCAGGGTA	58.408	45.455	0.00	0.00	45.56	3.69
2009	3663	5.816258	GGTAGGAAAAGGGTTAAATCTCGAG	59.184	44.000	5.93	5.93	0.00	4.04
2019	3676	0.322648	CCGACGGTAGGAAAAGGGTT	59.677	55.000	5.48	0.00	0.00	4.11
2032	3689	1.471684	GTAGGCAGATATACCCGACGG	59.528	57.143	6.99	6.99	0.00	4.79
2068	3741	0.689745	TAAGGCATGCGACCCTACCT	60.690	55.000	12.44	0.00	0.00	3.08
2099	3772	8.090250	ACAAACGCTGTATTTGATACTTACAA	57.910	30.769	11.17	0.00	39.01	2.41
2101	3774	8.112449	GGTACAAACGCTGTATTTGATACTTAC	58.888	37.037	11.17	4.79	42.50	2.34
2120	3794	1.126329	TGGTGGTAGGCGGGTACAAA	61.126	55.000	0.00	0.00	0.00	2.83
2135	3809	1.532604	TACTGTCGAGGTGCCTGGTG	61.533	60.000	0.00	0.00	0.00	4.17
2147	3821	1.200483	CCTATGCAACGCTACTGTCG	58.800	55.000	0.00	0.00	0.00	4.35
2149	3823	0.537188	AGCCTATGCAACGCTACTGT	59.463	50.000	3.91	0.00	41.13	3.55
2156	3830	3.319904	GCGGTAGCCTATGCAACG	58.680	61.111	0.00	0.00	41.13	4.10
2245	3919	2.036217	TGGCGATAGGTTATACCGGTTG	59.964	50.000	15.04	0.00	44.90	3.77
2246	3920	2.318908	TGGCGATAGGTTATACCGGTT	58.681	47.619	15.04	3.05	44.90	4.44
2249	3923	4.182693	TGAATGGCGATAGGTTATACCG	57.817	45.455	0.00	0.00	44.90	4.02
2256	3930	1.434188	TGGGATGAATGGCGATAGGT	58.566	50.000	0.00	0.00	0.00	3.08
2261	3935	1.455849	GGGATGGGATGAATGGCGA	59.544	57.895	0.00	0.00	0.00	5.54
2287	3961	2.095718	GCAGATTTGACCTTGGTTCGAC	60.096	50.000	0.00	0.00	0.00	4.20
2302	3977	5.691754	CCTTTCGCAAAAGTTAAAGCAGATT	59.308	36.000	0.00	0.00	40.30	2.40
2378	4053	1.953686	ACTTTTTAGGCGCTTCTGCAA	59.046	42.857	7.64	0.00	39.64	4.08
2386	4061	5.705902	TCTTAATTGGAACTTTTTAGGCGC	58.294	37.500	0.00	0.00	0.00	6.53
2437	4112	4.587262	AGAGGCAAAAATTCGGGTACTTTT	59.413	37.500	0.00	0.00	0.00	2.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.