Multiple sequence alignment - TraesCS1B01G388700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G388700 chr1B 100.000 6980 0 0 1 6980 622472426 622465447 0.000000e+00 12890.0
1 TraesCS1B01G388700 chr1A 92.987 1711 84 23 4043 5732 547300771 547299076 0.000000e+00 2462.0
2 TraesCS1B01G388700 chr1A 89.139 1510 91 43 2510 3984 547302343 547300872 0.000000e+00 1812.0
3 TraesCS1B01G388700 chr1A 90.046 653 48 11 5746 6392 547299028 547298387 0.000000e+00 830.0
4 TraesCS1B01G388700 chr1A 83.130 984 58 43 474 1374 547304113 547303155 0.000000e+00 798.0
5 TraesCS1B01G388700 chr1A 89.452 493 26 13 1500 1978 547303024 547302544 3.600000e-167 599.0
6 TraesCS1B01G388700 chr1A 86.943 314 30 6 1 311 547304526 547304221 6.700000e-90 342.0
7 TraesCS1B01G388700 chr1A 89.286 84 5 1 309 392 547304202 547304123 1.240000e-17 102.0
8 TraesCS1B01G388700 chr1D 92.654 1443 81 13 4286 5720 452480001 452478576 0.000000e+00 2054.0
9 TraesCS1B01G388700 chr1D 92.817 1420 75 18 4317 5731 452428686 452430083 0.000000e+00 2032.0
10 TraesCS1B01G388700 chr1D 92.817 1420 75 18 4317 5731 452457772 452456375 0.000000e+00 2032.0
11 TraesCS1B01G388700 chr1D 92.633 1181 53 19 2820 3984 452481635 452480473 0.000000e+00 1668.0
12 TraesCS1B01G388700 chr1D 88.465 1257 80 25 5723 6962 452430113 452431321 0.000000e+00 1458.0
13 TraesCS1B01G388700 chr1D 84.966 1184 67 53 261 1374 452483844 452482702 0.000000e+00 1098.0
14 TraesCS1B01G388700 chr1D 88.308 650 58 11 6343 6980 452420580 452421223 0.000000e+00 763.0
15 TraesCS1B01G388700 chr1D 88.519 601 56 8 6392 6980 452465830 452465231 0.000000e+00 715.0
16 TraesCS1B01G388700 chr1D 85.522 594 37 16 1405 1979 452482700 452482137 6.070000e-160 575.0
17 TraesCS1B01G388700 chr1D 95.170 352 14 3 5723 6073 452456345 452455996 2.850000e-153 553.0
18 TraesCS1B01G388700 chr1D 93.557 357 14 4 5719 6067 452478543 452478188 2.230000e-144 523.0
19 TraesCS1B01G388700 chr1D 89.295 383 29 7 2099 2475 51461861 51461485 2.950000e-128 470.0
20 TraesCS1B01G388700 chr1D 89.295 383 29 7 2099 2475 289024512 289024136 2.950000e-128 470.0
21 TraesCS1B01G388700 chr1D 89.034 383 30 7 2099 2475 232575523 232575147 1.370000e-126 464.0
22 TraesCS1B01G388700 chr1D 93.204 309 11 6 1655 1958 232575891 232575588 4.970000e-121 446.0
23 TraesCS1B01G388700 chr1D 85.995 407 39 9 3549 3952 452427872 452428263 3.010000e-113 420.0
24 TraesCS1B01G388700 chr1D 85.995 407 39 9 3549 3952 452458586 452458195 3.010000e-113 420.0
25 TraesCS1B01G388700 chr1D 91.506 259 19 3 6130 6387 452478180 452477924 3.100000e-93 353.0
26 TraesCS1B01G388700 chr1D 94.907 216 6 2 4037 4252 452480373 452480163 4.030000e-87 333.0
27 TraesCS1B01G388700 chr1D 87.295 244 21 8 3074 3314 452427466 452427702 3.210000e-68 270.0
28 TraesCS1B01G388700 chr1D 87.295 244 21 8 3074 3314 452458992 452458756 3.210000e-68 270.0
29 TraesCS1B01G388700 chr1D 85.455 275 20 9 2510 2781 289024151 289023894 1.150000e-67 268.0
30 TraesCS1B01G388700 chr1D 85.106 282 17 11 2510 2781 452481907 452481641 1.490000e-66 265.0
31 TraesCS1B01G388700 chr1D 86.752 234 16 5 2551 2781 232575131 232574910 5.410000e-61 246.0
32 TraesCS1B01G388700 chr1D 86.325 234 17 5 2551 2781 51461469 51461248 2.520000e-59 241.0
33 TraesCS1B01G388700 chr1D 91.358 162 7 2 53 210 452484012 452483854 1.520000e-51 215.0
34 TraesCS1B01G388700 chr1D 85.987 157 16 4 6197 6353 452455937 452455787 5.600000e-36 163.0
35 TraesCS1B01G388700 chr1D 84.956 113 14 1 3318 3430 452427631 452427740 2.060000e-20 111.0
36 TraesCS1B01G388700 chr1D 84.956 113 14 1 3318 3430 452458827 452458718 2.060000e-20 111.0
37 TraesCS1B01G388700 chr1D 88.889 72 6 1 3318 3387 452481217 452481146 3.470000e-13 87.9
38 TraesCS1B01G388700 chrUn 89.295 383 29 7 2099 2475 427983830 427983454 2.950000e-128 470.0
39 TraesCS1B01G388700 chrUn 89.218 371 28 7 2110 2474 95479088 95479452 2.970000e-123 453.0
40 TraesCS1B01G388700 chrUn 93.182 308 13 5 1655 1958 414412285 414411982 4.970000e-121 446.0
41 TraesCS1B01G388700 chrUn 92.857 308 14 5 1655 1958 95478709 95479012 2.310000e-119 440.0
42 TraesCS1B01G388700 chrUn 83.237 346 50 7 6637 6980 100333938 100334277 1.890000e-80 311.0
43 TraesCS1B01G388700 chrUn 87.179 234 15 5 2551 2781 95479469 95479690 1.160000e-62 252.0
44 TraesCS1B01G388700 chr2D 89.295 383 29 7 2099 2475 73252323 73252699 2.950000e-128 470.0
45 TraesCS1B01G388700 chr2D 87.179 234 15 5 2551 2781 73252715 73252936 1.160000e-62 252.0
46 TraesCS1B01G388700 chr2D 88.028 142 14 3 6466 6604 619364896 619364755 1.560000e-36 165.0
47 TraesCS1B01G388700 chr3D 89.034 383 30 5 2099 2475 71000730 71000354 1.370000e-126 464.0
48 TraesCS1B01G388700 chr3D 89.516 372 27 7 2110 2475 569424752 569424387 1.770000e-125 460.0
49 TraesCS1B01G388700 chr3D 93.182 308 13 5 1655 1958 569425131 569424828 4.970000e-121 446.0
50 TraesCS1B01G388700 chr3D 93.182 308 13 5 1655 1958 574405489 574405792 4.970000e-121 446.0
51 TraesCS1B01G388700 chr3D 92.857 308 14 5 1655 1958 71001098 71000795 2.310000e-119 440.0
52 TraesCS1B01G388700 chr3D 87.179 234 15 5 2551 2781 71000338 71000117 1.160000e-62 252.0
53 TraesCS1B01G388700 chr3D 86.752 234 16 10 2551 2781 569424371 569424150 5.410000e-61 246.0
54 TraesCS1B01G388700 chr3D 86.752 234 16 10 2551 2781 574406249 574406470 5.410000e-61 246.0
55 TraesCS1B01G388700 chr3D 92.000 50 4 0 5955 6004 327464703 327464654 3.490000e-08 71.3
56 TraesCS1B01G388700 chr5D 89.516 372 27 5 2110 2475 522908427 522908062 1.770000e-125 460.0
57 TraesCS1B01G388700 chr5D 93.182 308 13 5 1655 1958 522908806 522908503 4.970000e-121 446.0
58 TraesCS1B01G388700 chr5D 80.822 365 53 10 6468 6818 528767788 528768149 3.210000e-68 270.0
59 TraesCS1B01G388700 chr5D 86.752 234 16 5 2551 2781 522908046 522907825 5.410000e-61 246.0
60 TraesCS1B01G388700 chr5A 81.716 536 76 15 6461 6980 618125472 618124943 1.800000e-115 427.0
61 TraesCS1B01G388700 chr4D 82.946 387 51 11 6605 6980 479413085 479413467 1.120000e-87 335.0
62 TraesCS1B01G388700 chr3A 82.429 387 53 9 6605 6980 581256363 581255981 2.430000e-84 324.0
63 TraesCS1B01G388700 chr2B 82.383 386 53 9 6605 6980 695927568 695927188 8.730000e-84 322.0
64 TraesCS1B01G388700 chr2A 83.237 346 51 7 6637 6980 15946123 15945783 1.890000e-80 311.0
65 TraesCS1B01G388700 chr7D 82.997 347 52 6 6637 6980 46562273 46561931 2.450000e-79 307.0
66 TraesCS1B01G388700 chr3B 83.219 292 49 0 4964 5255 469768187 469767896 1.150000e-67 268.0
67 TraesCS1B01G388700 chr5B 88.732 142 13 3 6466 6604 521001631 521001490 3.350000e-38 171.0
68 TraesCS1B01G388700 chr5B 88.028 142 13 4 6466 6604 591778997 591778857 1.560000e-36 165.0
69 TraesCS1B01G388700 chr7B 88.571 140 14 2 6467 6604 64693550 64693689 1.200000e-37 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G388700 chr1B 622465447 622472426 6979 True 12890.000000 12890 100.000000 1 6980 1 chr1B.!!$R1 6979
1 TraesCS1B01G388700 chr1A 547298387 547304526 6139 True 992.142857 2462 88.711857 1 6392 7 chr1A.!!$R1 6391
2 TraesCS1B01G388700 chr1D 452427466 452431321 3855 False 858.200000 2032 87.905600 3074 6962 5 chr1D.!!$F2 3888
3 TraesCS1B01G388700 chr1D 452420580 452421223 643 False 763.000000 763 88.308000 6343 6980 1 chr1D.!!$F1 637
4 TraesCS1B01G388700 chr1D 452477924 452484012 6088 True 717.190000 2054 90.109800 53 6387 10 chr1D.!!$R6 6334
5 TraesCS1B01G388700 chr1D 452465231 452465830 599 True 715.000000 715 88.519000 6392 6980 1 chr1D.!!$R1 588
6 TraesCS1B01G388700 chr1D 452455787 452458992 3205 True 591.500000 2032 88.703333 3074 6353 6 chr1D.!!$R5 3279
7 TraesCS1B01G388700 chr1D 232574910 232575891 981 True 385.333333 464 89.663333 1655 2781 3 chr1D.!!$R3 1126
8 TraesCS1B01G388700 chr1D 289023894 289024512 618 True 369.000000 470 87.375000 2099 2781 2 chr1D.!!$R4 682
9 TraesCS1B01G388700 chr1D 51461248 51461861 613 True 355.500000 470 87.810000 2099 2781 2 chr1D.!!$R2 682
10 TraesCS1B01G388700 chrUn 95478709 95479690 981 False 381.666667 453 89.751333 1655 2781 3 chrUn.!!$F2 1126
11 TraesCS1B01G388700 chr2D 73252323 73252936 613 False 361.000000 470 88.237000 2099 2781 2 chr2D.!!$F1 682
12 TraesCS1B01G388700 chr3D 71000117 71001098 981 True 385.333333 464 89.690000 1655 2781 3 chr3D.!!$R2 1126
13 TraesCS1B01G388700 chr3D 569424150 569425131 981 True 384.000000 460 89.816667 1655 2781 3 chr3D.!!$R3 1126
14 TraesCS1B01G388700 chr3D 574405489 574406470 981 False 346.000000 446 89.967000 1655 2781 2 chr3D.!!$F1 1126
15 TraesCS1B01G388700 chr5D 522907825 522908806 981 True 384.000000 460 89.816667 1655 2781 3 chr5D.!!$R1 1126
16 TraesCS1B01G388700 chr5A 618124943 618125472 529 True 427.000000 427 81.716000 6461 6980 1 chr5A.!!$R1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 524 0.038159 ACAACGAGCCTGCACTCTAC 60.038 55.000 3.16 0.0 34.35 2.59 F
411 529 0.177604 GAGCCTGCACTCTACTGCAT 59.822 55.000 0.00 0.0 46.05 3.96 F
1991 2304 0.034186 TAGCCACTGCCCCTCAAATG 60.034 55.000 0.00 0.0 38.69 2.32 F
2606 2943 0.253044 TGCTCTGGGTTAGTGGATGC 59.747 55.000 0.00 0.0 0.00 3.91 F
2858 3204 0.889186 GGGCACAACGGTCAGTTCAT 60.889 55.000 0.00 0.0 42.02 2.57 F
3513 3946 1.066002 CACAGTGGTGCTTGTTTCCAG 59.934 52.381 0.00 0.0 38.37 3.86 F
3990 4441 1.074405 TGGCACTCTTGATTGGAGCTT 59.926 47.619 0.00 0.0 34.46 3.74 F
4631 5365 1.133869 CCTTTCCTTTTACGCGCCG 59.866 57.895 5.73 0.0 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1972 2285 0.034186 CATTTGAGGGGCAGTGGCTA 60.034 55.0 17.16 0.0 40.87 3.93 R
2032 2345 0.378962 TGTGTCGGCCAAAGAAAACG 59.621 50.0 2.24 0.0 0.00 3.60 R
2873 3219 0.033366 CGATCCCGATGTATGCCACA 59.967 55.0 0.00 0.0 42.69 4.17 R
4224 4825 0.991146 TGGAAGCAGATTACAGGGCA 59.009 50.0 0.00 0.0 0.00 5.36 R
4584 5318 2.810852 CTGGTTCTGGTTCTTCTTGCTC 59.189 50.0 0.00 0.0 0.00 4.26 R
5358 6116 0.320374 CAGAGCGGGTTTGTCCTGTA 59.680 55.0 0.00 0.0 44.16 2.74 R
5360 6118 0.535102 AACAGAGCGGGTTTGTCCTG 60.535 55.0 3.74 0.0 45.06 3.86 R
6590 7407 0.895559 GCTTGTTGGCTAGGTTGGCT 60.896 55.0 0.00 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.881796 GCTGGTGCTGGGTAAAACTC 59.118 55.000 0.00 0.00 36.03 3.01
35 36 1.156736 CTGGTGCTGGGTAAAACTCG 58.843 55.000 0.00 0.00 0.00 4.18
36 37 0.250553 TGGTGCTGGGTAAAACTCGG 60.251 55.000 0.00 0.00 0.00 4.63
38 39 1.302993 TGCTGGGTAAAACTCGGGC 60.303 57.895 0.00 0.00 0.00 6.13
40 41 1.378119 CTGGGTAAAACTCGGGCCC 60.378 63.158 13.57 13.57 39.73 5.80
41 42 1.848886 CTGGGTAAAACTCGGGCCCT 61.849 60.000 22.43 1.26 39.97 5.19
42 43 1.378119 GGGTAAAACTCGGGCCCTG 60.378 63.158 22.43 15.29 36.49 4.45
43 44 1.681076 GGTAAAACTCGGGCCCTGA 59.319 57.895 22.43 17.72 0.00 3.86
127 132 2.088763 CGGCATAGCACTATCGCCG 61.089 63.158 25.01 25.01 46.07 6.46
168 173 1.893808 GTCACCCACCACACTGCTG 60.894 63.158 0.00 0.00 0.00 4.41
169 174 3.289834 CACCCACCACACTGCTGC 61.290 66.667 0.00 0.00 0.00 5.25
170 175 3.492353 ACCCACCACACTGCTGCT 61.492 61.111 0.00 0.00 0.00 4.24
229 237 4.856607 CCGCTCGTCCCTTCGCTC 62.857 72.222 0.00 0.00 0.00 5.03
230 238 4.856607 CGCTCGTCCCTTCGCTCC 62.857 72.222 0.00 0.00 0.00 4.70
319 353 1.675720 GCACCACCAACAAAGGCTGT 61.676 55.000 0.00 0.00 41.27 4.40
392 510 3.767230 CCGCGACAGCAGACAACG 61.767 66.667 8.23 0.00 45.49 4.10
393 511 2.729491 CGCGACAGCAGACAACGA 60.729 61.111 0.00 0.00 45.49 3.85
394 512 2.710971 CGCGACAGCAGACAACGAG 61.711 63.158 0.00 0.00 45.49 4.18
395 513 3.004734 GCGACAGCAGACAACGAGC 62.005 63.158 0.00 0.00 44.35 5.03
396 514 2.375766 CGACAGCAGACAACGAGCC 61.376 63.158 0.00 0.00 0.00 4.70
397 515 1.005630 GACAGCAGACAACGAGCCT 60.006 57.895 0.00 0.00 0.00 4.58
398 516 1.287730 GACAGCAGACAACGAGCCTG 61.288 60.000 0.00 0.00 0.00 4.85
401 519 3.248029 CAGACAACGAGCCTGCAC 58.752 61.111 0.00 0.00 0.00 4.57
402 520 1.301244 CAGACAACGAGCCTGCACT 60.301 57.895 0.00 0.00 0.00 4.40
403 521 1.005630 AGACAACGAGCCTGCACTC 60.006 57.895 0.00 0.00 0.00 3.51
404 522 1.005630 GACAACGAGCCTGCACTCT 60.006 57.895 3.16 0.00 34.35 3.24
405 523 0.243907 GACAACGAGCCTGCACTCTA 59.756 55.000 3.16 0.00 34.35 2.43
406 524 0.038159 ACAACGAGCCTGCACTCTAC 60.038 55.000 3.16 0.00 34.35 2.59
407 525 0.244994 CAACGAGCCTGCACTCTACT 59.755 55.000 3.16 0.00 34.35 2.57
408 526 0.244994 AACGAGCCTGCACTCTACTG 59.755 55.000 3.16 0.00 34.35 2.74
409 527 1.518133 CGAGCCTGCACTCTACTGC 60.518 63.158 3.16 0.00 37.70 4.40
410 528 1.593787 GAGCCTGCACTCTACTGCA 59.406 57.895 0.00 0.00 45.06 4.41
411 529 0.177604 GAGCCTGCACTCTACTGCAT 59.822 55.000 0.00 0.00 46.05 3.96
412 530 1.410517 GAGCCTGCACTCTACTGCATA 59.589 52.381 0.00 0.00 46.05 3.14
413 531 2.036992 GAGCCTGCACTCTACTGCATAT 59.963 50.000 0.00 0.00 46.05 1.78
414 532 3.234353 AGCCTGCACTCTACTGCATATA 58.766 45.455 0.00 0.00 46.05 0.86
415 533 3.006323 AGCCTGCACTCTACTGCATATAC 59.994 47.826 0.00 0.00 46.05 1.47
416 534 3.243873 GCCTGCACTCTACTGCATATACA 60.244 47.826 0.00 0.00 46.05 2.29
417 535 4.302455 CCTGCACTCTACTGCATATACAC 58.698 47.826 0.00 0.00 46.05 2.90
418 536 4.202151 CCTGCACTCTACTGCATATACACA 60.202 45.833 0.00 0.00 46.05 3.72
419 537 4.936891 TGCACTCTACTGCATATACACAG 58.063 43.478 0.00 2.93 42.36 3.66
420 538 4.644685 TGCACTCTACTGCATATACACAGA 59.355 41.667 10.11 0.00 42.36 3.41
421 539 5.218885 GCACTCTACTGCATATACACAGAG 58.781 45.833 10.11 7.21 37.11 3.35
422 540 5.767269 CACTCTACTGCATATACACAGAGG 58.233 45.833 10.11 3.77 37.35 3.69
423 541 5.532779 CACTCTACTGCATATACACAGAGGA 59.467 44.000 10.11 6.93 37.35 3.71
424 542 6.039829 CACTCTACTGCATATACACAGAGGAA 59.960 42.308 10.11 0.00 37.35 3.36
425 543 6.264292 ACTCTACTGCATATACACAGAGGAAG 59.736 42.308 10.11 5.37 37.35 3.46
426 544 6.365520 TCTACTGCATATACACAGAGGAAGA 58.634 40.000 10.11 5.41 37.35 2.87
427 545 5.939764 ACTGCATATACACAGAGGAAGAA 57.060 39.130 10.11 0.00 37.35 2.52
428 546 6.299805 ACTGCATATACACAGAGGAAGAAA 57.700 37.500 10.11 0.00 37.35 2.52
429 547 6.344500 ACTGCATATACACAGAGGAAGAAAG 58.656 40.000 10.11 0.00 37.35 2.62
430 548 6.155221 ACTGCATATACACAGAGGAAGAAAGA 59.845 38.462 10.11 0.00 37.35 2.52
431 549 6.946340 TGCATATACACAGAGGAAGAAAGAA 58.054 36.000 0.00 0.00 0.00 2.52
432 550 7.394016 TGCATATACACAGAGGAAGAAAGAAA 58.606 34.615 0.00 0.00 0.00 2.52
433 551 7.550551 TGCATATACACAGAGGAAGAAAGAAAG 59.449 37.037 0.00 0.00 0.00 2.62
434 552 7.011857 GCATATACACAGAGGAAGAAAGAAAGG 59.988 40.741 0.00 0.00 0.00 3.11
435 553 3.481453 ACACAGAGGAAGAAAGAAAGGC 58.519 45.455 0.00 0.00 0.00 4.35
436 554 3.117888 ACACAGAGGAAGAAAGAAAGGCA 60.118 43.478 0.00 0.00 0.00 4.75
437 555 3.885297 CACAGAGGAAGAAAGAAAGGCAA 59.115 43.478 0.00 0.00 0.00 4.52
438 556 4.339247 CACAGAGGAAGAAAGAAAGGCAAA 59.661 41.667 0.00 0.00 0.00 3.68
439 557 4.582240 ACAGAGGAAGAAAGAAAGGCAAAG 59.418 41.667 0.00 0.00 0.00 2.77
440 558 4.823989 CAGAGGAAGAAAGAAAGGCAAAGA 59.176 41.667 0.00 0.00 0.00 2.52
441 559 5.300286 CAGAGGAAGAAAGAAAGGCAAAGAA 59.700 40.000 0.00 0.00 0.00 2.52
442 560 5.893824 AGAGGAAGAAAGAAAGGCAAAGAAA 59.106 36.000 0.00 0.00 0.00 2.52
443 561 6.381133 AGAGGAAGAAAGAAAGGCAAAGAAAA 59.619 34.615 0.00 0.00 0.00 2.29
444 562 6.946340 AGGAAGAAAGAAAGGCAAAGAAAAA 58.054 32.000 0.00 0.00 0.00 1.94
445 563 7.044181 AGGAAGAAAGAAAGGCAAAGAAAAAG 58.956 34.615 0.00 0.00 0.00 2.27
446 564 7.041721 GGAAGAAAGAAAGGCAAAGAAAAAGA 58.958 34.615 0.00 0.00 0.00 2.52
447 565 7.549134 GGAAGAAAGAAAGGCAAAGAAAAAGAA 59.451 33.333 0.00 0.00 0.00 2.52
448 566 8.846943 AAGAAAGAAAGGCAAAGAAAAAGAAA 57.153 26.923 0.00 0.00 0.00 2.52
449 567 8.846943 AGAAAGAAAGGCAAAGAAAAAGAAAA 57.153 26.923 0.00 0.00 0.00 2.29
450 568 9.283768 AGAAAGAAAGGCAAAGAAAAAGAAAAA 57.716 25.926 0.00 0.00 0.00 1.94
451 569 9.546909 GAAAGAAAGGCAAAGAAAAAGAAAAAG 57.453 29.630 0.00 0.00 0.00 2.27
452 570 8.846943 AAGAAAGGCAAAGAAAAAGAAAAAGA 57.153 26.923 0.00 0.00 0.00 2.52
453 571 8.846943 AGAAAGGCAAAGAAAAAGAAAAAGAA 57.153 26.923 0.00 0.00 0.00 2.52
454 572 9.283768 AGAAAGGCAAAGAAAAAGAAAAAGAAA 57.716 25.926 0.00 0.00 0.00 2.52
455 573 9.891828 GAAAGGCAAAGAAAAAGAAAAAGAAAA 57.108 25.926 0.00 0.00 0.00 2.29
476 594 4.336889 AAACACACGATCCAAGAGAAGA 57.663 40.909 0.00 0.00 0.00 2.87
478 596 3.157881 ACACACGATCCAAGAGAAGAGA 58.842 45.455 0.00 0.00 0.00 3.10
479 597 3.574396 ACACACGATCCAAGAGAAGAGAA 59.426 43.478 0.00 0.00 0.00 2.87
480 598 4.172505 CACACGATCCAAGAGAAGAGAAG 58.827 47.826 0.00 0.00 0.00 2.85
481 599 4.082517 CACACGATCCAAGAGAAGAGAAGA 60.083 45.833 0.00 0.00 0.00 2.87
482 600 4.157656 ACACGATCCAAGAGAAGAGAAGAG 59.842 45.833 0.00 0.00 0.00 2.85
483 601 3.699038 ACGATCCAAGAGAAGAGAAGAGG 59.301 47.826 0.00 0.00 0.00 3.69
484 602 3.490761 CGATCCAAGAGAAGAGAAGAGGC 60.491 52.174 0.00 0.00 0.00 4.70
525 643 4.256180 ATCCAGCGGGGGATTCGC 62.256 66.667 2.05 0.00 45.42 4.70
532 650 1.743995 CGGGGGATTCGCTTCGTTT 60.744 57.895 0.40 0.00 0.00 3.60
533 651 1.303091 CGGGGGATTCGCTTCGTTTT 61.303 55.000 0.40 0.00 0.00 2.43
537 655 1.465856 GGGATTCGCTTCGTTTTGCTC 60.466 52.381 0.00 0.00 0.00 4.26
538 656 1.514136 GATTCGCTTCGTTTTGCTCG 58.486 50.000 0.00 0.00 0.00 5.03
540 658 1.837538 TTCGCTTCGTTTTGCTCGGG 61.838 55.000 0.00 0.00 0.00 5.14
561 687 4.622456 CGCCACCGCAACACCAAC 62.622 66.667 0.00 0.00 34.03 3.77
644 770 2.037136 AGATCAGCAACCGCACAGC 61.037 57.895 0.00 0.00 42.27 4.40
645 771 2.281692 ATCAGCAACCGCACAGCA 60.282 55.556 0.00 0.00 42.27 4.41
646 772 2.249557 GATCAGCAACCGCACAGCAG 62.250 60.000 0.00 0.00 42.27 4.24
647 773 2.736579 ATCAGCAACCGCACAGCAGA 62.737 55.000 0.00 0.00 42.27 4.26
648 774 2.667536 AGCAACCGCACAGCAGAG 60.668 61.111 0.00 0.00 42.27 3.35
649 775 2.666190 GCAACCGCACAGCAGAGA 60.666 61.111 0.00 0.00 38.36 3.10
650 776 2.675056 GCAACCGCACAGCAGAGAG 61.675 63.158 0.00 0.00 38.36 3.20
651 777 1.005748 CAACCGCACAGCAGAGAGA 60.006 57.895 0.00 0.00 0.00 3.10
660 786 1.068281 ACAGCAGAGAGACACACACAG 59.932 52.381 0.00 0.00 0.00 3.66
672 829 0.253044 ACACACAGCACACTCTTGGT 59.747 50.000 0.00 0.00 0.00 3.67
680 837 4.586618 CACTCTTGGTGCTCTCCG 57.413 61.111 0.00 0.00 39.22 4.63
727 903 1.156322 TGGAACCTCCTCCTCCTCCT 61.156 60.000 0.00 0.00 37.46 3.69
728 904 0.397957 GGAACCTCCTCCTCCTCCTC 60.398 65.000 0.00 0.00 32.53 3.71
729 905 0.397957 GAACCTCCTCCTCCTCCTCC 60.398 65.000 0.00 0.00 0.00 4.30
894 1084 2.832661 GCCCAGCCAACACACACA 60.833 61.111 0.00 0.00 0.00 3.72
895 1085 3.119193 CCCAGCCAACACACACAC 58.881 61.111 0.00 0.00 0.00 3.82
935 1125 0.882042 CACACACCAGAGCTCACACC 60.882 60.000 17.77 0.00 0.00 4.16
938 1128 1.344953 ACACCAGAGCTCACACCCAA 61.345 55.000 17.77 0.00 0.00 4.12
939 1129 0.886490 CACCAGAGCTCACACCCAAC 60.886 60.000 17.77 0.00 0.00 3.77
940 1130 1.669115 CCAGAGCTCACACCCAACG 60.669 63.158 17.77 0.00 0.00 4.10
941 1131 1.367471 CAGAGCTCACACCCAACGA 59.633 57.895 17.77 0.00 0.00 3.85
942 1132 0.946221 CAGAGCTCACACCCAACGAC 60.946 60.000 17.77 0.00 0.00 4.34
943 1133 2.022129 GAGCTCACACCCAACGACG 61.022 63.158 9.40 0.00 0.00 5.12
944 1134 2.028484 GCTCACACCCAACGACGA 59.972 61.111 0.00 0.00 0.00 4.20
945 1135 2.308039 GCTCACACCCAACGACGAC 61.308 63.158 0.00 0.00 0.00 4.34
966 1176 1.151587 TCCCCTGCTCCCTTCCTTT 60.152 57.895 0.00 0.00 0.00 3.11
1043 1262 2.270850 TGGTAAGCCCATGCGGTC 59.729 61.111 2.68 0.00 44.33 4.79
1044 1263 2.516225 GGTAAGCCCATGCGGTCC 60.516 66.667 2.68 0.00 44.33 4.46
1046 1265 4.169696 TAAGCCCATGCGGTCCCG 62.170 66.667 0.24 0.24 44.33 5.14
1054 1299 2.322081 ATGCGGTCCCGTTTCGTTG 61.322 57.895 7.66 0.00 42.09 4.10
1055 1300 2.968697 GCGGTCCCGTTTCGTTGT 60.969 61.111 7.66 0.00 42.09 3.32
1084 1329 2.823593 TGATGCCGGCGTTGATGG 60.824 61.111 24.75 0.00 0.00 3.51
1095 1340 1.209275 CGTTGATGGACCTCGATCGC 61.209 60.000 11.09 0.00 34.37 4.58
1112 1357 2.124736 CGTGGCCGATGGGTTGAT 60.125 61.111 0.00 0.00 35.63 2.57
1120 1365 3.057315 GGCCGATGGGTTGATTGATTATG 60.057 47.826 0.00 0.00 34.97 1.90
1121 1366 3.612479 GCCGATGGGTTGATTGATTATGC 60.612 47.826 0.00 0.00 34.97 3.14
1122 1367 3.365264 CCGATGGGTTGATTGATTATGCG 60.365 47.826 0.00 0.00 0.00 4.73
1123 1368 3.250762 CGATGGGTTGATTGATTATGCGT 59.749 43.478 0.00 0.00 0.00 5.24
1124 1369 4.539870 GATGGGTTGATTGATTATGCGTG 58.460 43.478 0.00 0.00 0.00 5.34
1125 1370 3.351740 TGGGTTGATTGATTATGCGTGT 58.648 40.909 0.00 0.00 0.00 4.49
1126 1371 3.128415 TGGGTTGATTGATTATGCGTGTG 59.872 43.478 0.00 0.00 0.00 3.82
1127 1372 3.108144 GGTTGATTGATTATGCGTGTGC 58.892 45.455 0.00 0.00 43.20 4.57
1263 1508 1.984570 CGACAAGGAGGAGAGGCCA 60.985 63.158 5.01 0.00 40.02 5.36
1271 1516 1.076632 AGGAGAGGCCAGAGGTACG 60.077 63.158 5.01 0.00 40.02 3.67
1285 1539 1.134098 AGGTACGGCCAATCATCCTTG 60.134 52.381 2.24 0.00 40.61 3.61
1286 1540 0.663153 GTACGGCCAATCATCCTTGC 59.337 55.000 2.24 0.00 0.00 4.01
1288 1542 0.546122 ACGGCCAATCATCCTTGCTA 59.454 50.000 2.24 0.00 0.00 3.49
1289 1543 1.064758 ACGGCCAATCATCCTTGCTAA 60.065 47.619 2.24 0.00 0.00 3.09
1291 1545 2.227388 CGGCCAATCATCCTTGCTAATC 59.773 50.000 2.24 0.00 0.00 1.75
1292 1546 2.560105 GGCCAATCATCCTTGCTAATCC 59.440 50.000 0.00 0.00 0.00 3.01
1297 1553 3.795688 TCATCCTTGCTAATCCCATCC 57.204 47.619 0.00 0.00 0.00 3.51
1306 1562 3.142597 TGCTAATCCCATCCCATCCATTT 59.857 43.478 0.00 0.00 0.00 2.32
1309 1565 0.178992 TCCCATCCCATCCATTTCGC 60.179 55.000 0.00 0.00 0.00 4.70
1343 1599 2.846039 TCTCGCCGTACATCTTCTTC 57.154 50.000 0.00 0.00 0.00 2.87
1374 1630 5.068723 GGATCCTCACCGTACATCTTTTCTA 59.931 44.000 3.84 0.00 0.00 2.10
1375 1631 5.320549 TCCTCACCGTACATCTTTTCTAC 57.679 43.478 0.00 0.00 0.00 2.59
1376 1632 5.014858 TCCTCACCGTACATCTTTTCTACT 58.985 41.667 0.00 0.00 0.00 2.57
1377 1633 5.125097 TCCTCACCGTACATCTTTTCTACTC 59.875 44.000 0.00 0.00 0.00 2.59
1378 1634 4.978186 TCACCGTACATCTTTTCTACTCG 58.022 43.478 0.00 0.00 0.00 4.18
1379 1635 4.456911 TCACCGTACATCTTTTCTACTCGT 59.543 41.667 0.00 0.00 0.00 4.18
1380 1636 5.643348 TCACCGTACATCTTTTCTACTCGTA 59.357 40.000 0.00 0.00 0.00 3.43
1381 1637 5.736358 CACCGTACATCTTTTCTACTCGTAC 59.264 44.000 0.00 0.00 0.00 3.67
1382 1638 5.412594 ACCGTACATCTTTTCTACTCGTACA 59.587 40.000 0.00 0.00 0.00 2.90
1383 1639 6.094603 ACCGTACATCTTTTCTACTCGTACAT 59.905 38.462 0.00 0.00 0.00 2.29
1384 1640 6.632035 CCGTACATCTTTTCTACTCGTACATC 59.368 42.308 0.00 0.00 0.00 3.06
1385 1641 7.408123 CGTACATCTTTTCTACTCGTACATCT 58.592 38.462 0.00 0.00 0.00 2.90
1386 1642 7.909121 CGTACATCTTTTCTACTCGTACATCTT 59.091 37.037 0.00 0.00 0.00 2.40
1387 1643 9.570488 GTACATCTTTTCTACTCGTACATCTTT 57.430 33.333 0.00 0.00 0.00 2.52
1389 1645 8.926710 ACATCTTTTCTACTCGTACATCTTTTG 58.073 33.333 0.00 0.00 0.00 2.44
1390 1646 8.926710 CATCTTTTCTACTCGTACATCTTTTGT 58.073 33.333 0.00 0.00 42.62 2.83
1391 1647 8.882415 TCTTTTCTACTCGTACATCTTTTGTT 57.118 30.769 0.00 0.00 39.87 2.83
1392 1648 9.321562 TCTTTTCTACTCGTACATCTTTTGTTT 57.678 29.630 0.00 0.00 39.87 2.83
1393 1649 9.931210 CTTTTCTACTCGTACATCTTTTGTTTT 57.069 29.630 0.00 0.00 39.87 2.43
1438 1694 1.284982 CGTGGCACGGAGACAAGAAG 61.285 60.000 31.19 0.00 38.08 2.85
1504 1794 2.320805 TCGTACACTCGTACTGTTGC 57.679 50.000 0.00 0.00 44.97 4.17
1597 1887 4.636435 CCAAACGACGGGTGGCCT 62.636 66.667 3.32 0.00 0.00 5.19
1598 1888 3.047877 CAAACGACGGGTGGCCTC 61.048 66.667 3.32 0.00 0.00 4.70
1599 1889 3.239253 AAACGACGGGTGGCCTCT 61.239 61.111 3.32 0.00 0.00 3.69
1600 1890 3.236003 AAACGACGGGTGGCCTCTC 62.236 63.158 3.32 0.00 0.00 3.20
1603 1893 2.043248 GACGGGTGGCCTCTCCTA 60.043 66.667 3.32 0.00 35.26 2.94
1604 1894 2.042843 ACGGGTGGCCTCTCCTAG 60.043 66.667 3.32 5.64 35.26 3.02
1605 1895 2.279073 CGGGTGGCCTCTCCTAGA 59.721 66.667 3.32 0.00 35.26 2.43
1606 1896 1.152440 CGGGTGGCCTCTCCTAGAT 60.152 63.158 3.32 0.00 35.26 1.98
1652 1953 4.402155 CAGAGGCCCACATGCTAAAAATTA 59.598 41.667 0.00 0.00 0.00 1.40
1654 1955 5.662657 AGAGGCCCACATGCTAAAAATTATT 59.337 36.000 0.00 0.00 0.00 1.40
1658 1959 7.336679 AGGCCCACATGCTAAAAATTATTTTTC 59.663 33.333 17.50 6.86 41.60 2.29
1673 1975 7.759489 ATTATTTTTCCTTTTCTTTTGGGGC 57.241 32.000 0.00 0.00 0.00 5.80
1749 2051 5.279708 CGACTTTCCATATAAGAGCCAGGAT 60.280 44.000 0.00 0.00 0.00 3.24
1864 2177 7.596621 GCTAAATCACCTTTTCCTCTGAAAAAG 59.403 37.037 7.34 7.34 46.76 2.27
1866 2179 3.636764 TCACCTTTTCCTCTGAAAAAGGC 59.363 43.478 23.85 0.00 46.76 4.35
1922 2235 0.759346 GCTATGTGGGGAATCGTCCT 59.241 55.000 0.00 0.00 44.28 3.85
1935 2248 3.652057 ATCGTCCTTGTCCATTTCCAT 57.348 42.857 0.00 0.00 0.00 3.41
1937 2250 2.304470 TCGTCCTTGTCCATTTCCATCA 59.696 45.455 0.00 0.00 0.00 3.07
1938 2251 3.054434 TCGTCCTTGTCCATTTCCATCAT 60.054 43.478 0.00 0.00 0.00 2.45
1939 2252 3.065786 CGTCCTTGTCCATTTCCATCATG 59.934 47.826 0.00 0.00 0.00 3.07
1965 2278 9.727627 GATGATTACAAAAATCCAACTCATCTC 57.272 33.333 0.00 0.00 35.66 2.75
1966 2279 8.868522 TGATTACAAAAATCCAACTCATCTCT 57.131 30.769 0.00 0.00 0.00 3.10
1967 2280 9.958180 TGATTACAAAAATCCAACTCATCTCTA 57.042 29.630 0.00 0.00 0.00 2.43
1976 2289 9.732130 AAATCCAACTCATCTCTAATATTAGCC 57.268 33.333 16.37 0.00 0.00 3.93
1977 2290 7.855784 TCCAACTCATCTCTAATATTAGCCA 57.144 36.000 16.37 6.63 0.00 4.75
1978 2291 7.671302 TCCAACTCATCTCTAATATTAGCCAC 58.329 38.462 16.37 0.00 0.00 5.01
1979 2292 7.510685 TCCAACTCATCTCTAATATTAGCCACT 59.489 37.037 16.37 0.43 0.00 4.00
1980 2293 7.601886 CCAACTCATCTCTAATATTAGCCACTG 59.398 40.741 16.37 11.08 0.00 3.66
1981 2294 6.696411 ACTCATCTCTAATATTAGCCACTGC 58.304 40.000 16.37 0.00 37.95 4.40
1982 2295 6.042638 TCATCTCTAATATTAGCCACTGCC 57.957 41.667 16.37 0.00 38.69 4.85
1983 2296 4.891992 TCTCTAATATTAGCCACTGCCC 57.108 45.455 16.37 0.00 38.69 5.36
1984 2297 3.583086 TCTCTAATATTAGCCACTGCCCC 59.417 47.826 16.37 0.00 38.69 5.80
1985 2298 3.584848 CTCTAATATTAGCCACTGCCCCT 59.415 47.826 16.37 0.00 38.69 4.79
1986 2299 2.959465 AATATTAGCCACTGCCCCTC 57.041 50.000 0.00 0.00 38.69 4.30
1987 2300 1.819753 ATATTAGCCACTGCCCCTCA 58.180 50.000 0.00 0.00 38.69 3.86
1988 2301 1.590591 TATTAGCCACTGCCCCTCAA 58.409 50.000 0.00 0.00 38.69 3.02
1989 2302 0.704076 ATTAGCCACTGCCCCTCAAA 59.296 50.000 0.00 0.00 38.69 2.69
1990 2303 0.704076 TTAGCCACTGCCCCTCAAAT 59.296 50.000 0.00 0.00 38.69 2.32
1991 2304 0.034186 TAGCCACTGCCCCTCAAATG 60.034 55.000 0.00 0.00 38.69 2.32
1992 2305 1.304381 GCCACTGCCCCTCAAATGA 60.304 57.895 0.00 0.00 0.00 2.57
1993 2306 0.899717 GCCACTGCCCCTCAAATGAA 60.900 55.000 0.00 0.00 0.00 2.57
1994 2307 1.856629 CCACTGCCCCTCAAATGAAT 58.143 50.000 0.00 0.00 0.00 2.57
1995 2308 2.949963 GCCACTGCCCCTCAAATGAATA 60.950 50.000 0.00 0.00 0.00 1.75
1996 2309 3.364549 CCACTGCCCCTCAAATGAATAA 58.635 45.455 0.00 0.00 0.00 1.40
1997 2310 3.768757 CCACTGCCCCTCAAATGAATAAA 59.231 43.478 0.00 0.00 0.00 1.40
1998 2311 4.381932 CCACTGCCCCTCAAATGAATAAAC 60.382 45.833 0.00 0.00 0.00 2.01
1999 2312 4.220382 CACTGCCCCTCAAATGAATAAACA 59.780 41.667 0.00 0.00 0.00 2.83
2000 2313 4.837860 ACTGCCCCTCAAATGAATAAACAA 59.162 37.500 0.00 0.00 0.00 2.83
2001 2314 5.306678 ACTGCCCCTCAAATGAATAAACAAA 59.693 36.000 0.00 0.00 0.00 2.83
2002 2315 6.013466 ACTGCCCCTCAAATGAATAAACAAAT 60.013 34.615 0.00 0.00 0.00 2.32
2003 2316 6.405538 TGCCCCTCAAATGAATAAACAAATC 58.594 36.000 0.00 0.00 0.00 2.17
2006 2319 8.257306 GCCCCTCAAATGAATAAACAAATCTAA 58.743 33.333 0.00 0.00 0.00 2.10
2062 2375 1.923864 GGCCGACACAAACAACAAAAG 59.076 47.619 0.00 0.00 0.00 2.27
2064 2377 2.672760 GCCGACACAAACAACAAAAGGT 60.673 45.455 0.00 0.00 0.00 3.50
2066 2379 4.734917 CCGACACAAACAACAAAAGGTTA 58.265 39.130 0.00 0.00 37.72 2.85
2069 2382 5.859648 CGACACAAACAACAAAAGGTTACTT 59.140 36.000 0.00 0.00 37.72 2.24
2070 2383 7.022384 CGACACAAACAACAAAAGGTTACTTA 58.978 34.615 0.00 0.00 37.72 2.24
2071 2384 7.698970 CGACACAAACAACAAAAGGTTACTTAT 59.301 33.333 0.00 0.00 37.72 1.73
2149 2462 5.036916 AGTATGTTGGAAGGGGATCAACTA 58.963 41.667 0.00 0.00 40.75 2.24
2163 2476 7.237471 AGGGGATCAACTAAATGTTTGGATTTT 59.763 33.333 0.00 0.00 36.63 1.82
2192 2505 6.567687 TTCCAACGCTTAATTTCTTGATGA 57.432 33.333 0.00 0.00 0.00 2.92
2193 2506 6.757897 TCCAACGCTTAATTTCTTGATGAT 57.242 33.333 0.00 0.00 0.00 2.45
2194 2507 7.857734 TCCAACGCTTAATTTCTTGATGATA 57.142 32.000 0.00 0.00 0.00 2.15
2195 2508 8.450578 TCCAACGCTTAATTTCTTGATGATAT 57.549 30.769 0.00 0.00 0.00 1.63
2272 2591 4.769688 TCTAGCACATAACTGAACATGGG 58.230 43.478 0.00 0.00 0.00 4.00
2293 2613 2.080286 AGTCAAGTCGTCGAATTGGG 57.920 50.000 28.81 10.36 38.05 4.12
2364 2684 6.776116 AGCTACTGGTGCTACTACACATATAA 59.224 38.462 0.00 0.00 42.55 0.98
2366 2686 7.040617 GCTACTGGTGCTACTACACATATAAGA 60.041 40.741 0.00 0.00 42.55 2.10
2367 2687 7.655521 ACTGGTGCTACTACACATATAAGAA 57.344 36.000 0.00 0.00 42.55 2.52
2403 2723 6.780457 AAAGGCAGCACTATAAAATGACAT 57.220 33.333 0.00 0.00 0.00 3.06
2475 2797 6.058183 GCACCATCCACTTGTAGAGAATATT 58.942 40.000 0.00 0.00 0.00 1.28
2476 2798 6.543831 GCACCATCCACTTGTAGAGAATATTT 59.456 38.462 0.00 0.00 0.00 1.40
2477 2799 7.254932 GCACCATCCACTTGTAGAGAATATTTC 60.255 40.741 0.00 0.00 0.00 2.17
2478 2800 7.227512 CACCATCCACTTGTAGAGAATATTTCC 59.772 40.741 0.00 0.00 0.00 3.13
2479 2801 6.712547 CCATCCACTTGTAGAGAATATTTCCC 59.287 42.308 0.00 0.00 0.00 3.97
2480 2802 7.420680 CCATCCACTTGTAGAGAATATTTCCCT 60.421 40.741 0.00 0.00 0.00 4.20
2481 2803 7.125792 TCCACTTGTAGAGAATATTTCCCTC 57.874 40.000 0.00 0.00 0.00 4.30
2482 2804 6.672218 TCCACTTGTAGAGAATATTTCCCTCA 59.328 38.462 5.67 0.00 0.00 3.86
2483 2805 7.182026 TCCACTTGTAGAGAATATTTCCCTCAA 59.818 37.037 5.67 2.39 0.00 3.02
2484 2806 7.281100 CCACTTGTAGAGAATATTTCCCTCAAC 59.719 40.741 5.67 0.00 0.00 3.18
2485 2807 7.824289 CACTTGTAGAGAATATTTCCCTCAACA 59.176 37.037 5.67 0.00 0.00 3.33
2486 2808 8.383175 ACTTGTAGAGAATATTTCCCTCAACAA 58.617 33.333 5.67 0.00 0.00 2.83
2487 2809 8.561738 TTGTAGAGAATATTTCCCTCAACAAC 57.438 34.615 5.67 0.69 0.00 3.32
2488 2810 7.685481 TGTAGAGAATATTTCCCTCAACAACA 58.315 34.615 5.67 2.62 0.00 3.33
2489 2811 8.160765 TGTAGAGAATATTTCCCTCAACAACAA 58.839 33.333 5.67 0.00 0.00 2.83
2490 2812 7.454260 AGAGAATATTTCCCTCAACAACAAC 57.546 36.000 5.67 0.00 0.00 3.32
2491 2813 7.004086 AGAGAATATTTCCCTCAACAACAACA 58.996 34.615 5.67 0.00 0.00 3.33
2492 2814 7.505585 AGAGAATATTTCCCTCAACAACAACAA 59.494 33.333 5.67 0.00 0.00 2.83
2493 2815 7.433680 AGAATATTTCCCTCAACAACAACAAC 58.566 34.615 0.00 0.00 0.00 3.32
2494 2816 6.723298 ATATTTCCCTCAACAACAACAACA 57.277 33.333 0.00 0.00 0.00 3.33
2495 2817 4.873746 TTTCCCTCAACAACAACAACAA 57.126 36.364 0.00 0.00 0.00 2.83
2496 2818 3.859411 TCCCTCAACAACAACAACAAC 57.141 42.857 0.00 0.00 0.00 3.32
2497 2819 3.157881 TCCCTCAACAACAACAACAACA 58.842 40.909 0.00 0.00 0.00 3.33
2498 2820 3.574396 TCCCTCAACAACAACAACAACAA 59.426 39.130 0.00 0.00 0.00 2.83
2499 2821 3.677596 CCCTCAACAACAACAACAACAAC 59.322 43.478 0.00 0.00 0.00 3.32
2500 2822 4.302455 CCTCAACAACAACAACAACAACA 58.698 39.130 0.00 0.00 0.00 3.33
2501 2823 4.747108 CCTCAACAACAACAACAACAACAA 59.253 37.500 0.00 0.00 0.00 2.83
2502 2824 5.235186 CCTCAACAACAACAACAACAACAAA 59.765 36.000 0.00 0.00 0.00 2.83
2503 2825 6.238211 CCTCAACAACAACAACAACAACAAAA 60.238 34.615 0.00 0.00 0.00 2.44
2504 2826 7.072177 TCAACAACAACAACAACAACAAAAA 57.928 28.000 0.00 0.00 0.00 1.94
2560 2894 5.426504 CTCATTACTGAGCCTGAACTGAAT 58.573 41.667 0.00 0.00 42.36 2.57
2595 2932 3.937706 CACTCTCACTTATTTGCTCTGGG 59.062 47.826 0.00 0.00 0.00 4.45
2606 2943 0.253044 TGCTCTGGGTTAGTGGATGC 59.747 55.000 0.00 0.00 0.00 3.91
2616 2953 3.181445 GGTTAGTGGATGCATATGTGGGA 60.181 47.826 0.00 0.00 0.00 4.37
2620 2957 4.352009 AGTGGATGCATATGTGGGAAAAA 58.648 39.130 0.00 0.00 0.00 1.94
2643 2980 2.918712 AGTGAAAGTGAGTGGTGGAG 57.081 50.000 0.00 0.00 0.00 3.86
2676 3013 5.422970 ACAACAGAACATATTCATGGCCATT 59.577 36.000 17.92 4.22 37.29 3.16
2715 3061 6.821160 CCTTACCATCTTCTTCTTCTTCTTCC 59.179 42.308 0.00 0.00 0.00 3.46
2718 3064 5.045942 ACCATCTTCTTCTTCTTCTTCCTCC 60.046 44.000 0.00 0.00 0.00 4.30
2778 3124 4.615949 ACAGAGCATGAGAACGTCATATC 58.384 43.478 0.00 0.00 44.73 1.63
2779 3125 4.098501 ACAGAGCATGAGAACGTCATATCA 59.901 41.667 0.00 0.00 44.73 2.15
2780 3126 4.443725 CAGAGCATGAGAACGTCATATCAC 59.556 45.833 0.00 0.00 44.73 3.06
2784 3130 4.259970 GCATGAGAACGTCATATCACACAC 60.260 45.833 0.00 0.00 44.73 3.82
2796 3142 6.760298 GTCATATCACACACTGATCATCACTT 59.240 38.462 0.00 0.00 40.38 3.16
2803 3149 5.468072 ACACACTGATCATCACTTCAGAAAC 59.532 40.000 6.91 0.00 41.53 2.78
2815 3161 3.322828 ACTTCAGAAACATGCAGCCAATT 59.677 39.130 0.00 0.00 0.00 2.32
2817 3163 4.439305 TCAGAAACATGCAGCCAATTAC 57.561 40.909 0.00 0.00 0.00 1.89
2831 3177 4.096984 AGCCAATTACTATCACAAAGCAGC 59.903 41.667 0.00 0.00 0.00 5.25
2858 3204 0.889186 GGGCACAACGGTCAGTTCAT 60.889 55.000 0.00 0.00 42.02 2.57
2873 3219 2.026262 AGTTCATGGCCGAAAGTATGGT 60.026 45.455 0.00 0.00 0.00 3.55
2881 3227 2.912771 CCGAAAGTATGGTGTGGCATA 58.087 47.619 0.00 0.00 0.00 3.14
2894 3240 1.741770 GGCATACATCGGGATCGGC 60.742 63.158 0.00 0.00 36.95 5.54
2957 3330 1.568612 GCATAGCGTGCGTGGCATAT 61.569 55.000 1.40 0.00 45.23 1.78
2958 3331 1.708822 CATAGCGTGCGTGGCATATA 58.291 50.000 0.00 0.00 41.91 0.86
3039 3412 2.041301 TATCACCCCTGGACCCGG 60.041 66.667 0.00 0.00 0.00 5.73
3197 3570 1.908793 ATATCGCTAGCCAGCCCGT 60.909 57.895 9.66 0.00 45.64 5.28
3198 3571 1.878656 ATATCGCTAGCCAGCCCGTC 61.879 60.000 9.66 0.00 45.64 4.79
3314 3714 4.913126 GGTACCAAGGAGCAGTCG 57.087 61.111 7.15 0.00 0.00 4.18
3399 3799 2.365370 AGGAGAGGCTGGCAGAGG 60.365 66.667 20.86 0.00 0.00 3.69
3491 3924 6.900568 TTTGTCTAAAATTTTGGCACACAG 57.099 33.333 13.76 1.26 39.29 3.66
3497 3930 3.441496 AATTTTGGCACACAGACACAG 57.559 42.857 0.00 0.00 39.29 3.66
3513 3946 1.066002 CACAGTGGTGCTTGTTTCCAG 59.934 52.381 0.00 0.00 38.37 3.86
3522 3955 3.066760 GTGCTTGTTTCCAGTGTAGCTTT 59.933 43.478 0.00 0.00 0.00 3.51
3523 3956 4.274950 GTGCTTGTTTCCAGTGTAGCTTTA 59.725 41.667 0.00 0.00 0.00 1.85
3699 4140 2.086054 AGCGTCATCAAGAAGGTGAC 57.914 50.000 0.00 0.00 39.02 3.67
3706 4147 4.402793 GTCATCAAGAAGGTGACCTAGCTA 59.597 45.833 3.68 0.00 37.00 3.32
3707 4148 4.402793 TCATCAAGAAGGTGACCTAGCTAC 59.597 45.833 3.68 0.00 35.72 3.58
3893 4344 3.515502 TCAAGATCGAGGACAACTCCATT 59.484 43.478 0.00 0.00 43.57 3.16
3985 4436 3.498927 GTGAATGGCACTCTTGATTGG 57.501 47.619 0.00 0.00 44.27 3.16
3986 4437 3.084039 GTGAATGGCACTCTTGATTGGA 58.916 45.455 0.00 0.00 44.27 3.53
3987 4438 3.128242 GTGAATGGCACTCTTGATTGGAG 59.872 47.826 0.00 0.00 44.27 3.86
3988 4439 1.760192 ATGGCACTCTTGATTGGAGC 58.240 50.000 0.00 0.00 34.46 4.70
3990 4441 1.074405 TGGCACTCTTGATTGGAGCTT 59.926 47.619 0.00 0.00 34.46 3.74
3992 4443 2.941720 GGCACTCTTGATTGGAGCTTAG 59.058 50.000 0.00 0.00 34.46 2.18
3994 4445 4.256920 GCACTCTTGATTGGAGCTTAGAA 58.743 43.478 0.00 0.00 34.46 2.10
3998 4449 6.822676 CACTCTTGATTGGAGCTTAGAAGAAT 59.177 38.462 0.00 0.00 34.46 2.40
3999 4450 7.336427 CACTCTTGATTGGAGCTTAGAAGAATT 59.664 37.037 0.00 0.00 34.46 2.17
4001 4452 8.048534 TCTTGATTGGAGCTTAGAAGAATTTG 57.951 34.615 0.00 0.00 0.00 2.32
4010 4461 7.371126 AGCTTAGAAGAATTTGCTTCAGTAC 57.629 36.000 8.99 0.00 45.21 2.73
4012 4463 7.445402 AGCTTAGAAGAATTTGCTTCAGTACAA 59.555 33.333 8.99 0.00 45.21 2.41
4015 4466 9.730420 TTAGAAGAATTTGCTTCAGTACAAAAC 57.270 29.630 8.99 0.00 45.21 2.43
4016 4467 7.771183 AGAAGAATTTGCTTCAGTACAAAACA 58.229 30.769 8.99 0.00 45.21 2.83
4017 4468 7.917505 AGAAGAATTTGCTTCAGTACAAAACAG 59.082 33.333 8.99 0.00 45.21 3.16
4018 4469 7.333528 AGAATTTGCTTCAGTACAAAACAGA 57.666 32.000 0.00 0.00 39.09 3.41
4019 4470 7.945134 AGAATTTGCTTCAGTACAAAACAGAT 58.055 30.769 0.00 0.00 39.09 2.90
4020 4471 7.864379 AGAATTTGCTTCAGTACAAAACAGATG 59.136 33.333 0.00 0.00 39.09 2.90
4021 4472 6.449635 TTTGCTTCAGTACAAAACAGATGT 57.550 33.333 0.00 0.00 33.06 3.06
4022 4473 7.561021 TTTGCTTCAGTACAAAACAGATGTA 57.439 32.000 0.00 0.00 33.06 2.29
4039 4490 9.609346 AACAGATGTACAGTACTAACTTTTTGT 57.391 29.630 12.07 2.85 31.97 2.83
4113 4710 3.571401 GTGGGCATATTTTCATCAGGGAG 59.429 47.826 0.00 0.00 0.00 4.30
4209 4809 3.691609 CCAAGGTTAGCACTCCAATTCTC 59.308 47.826 0.00 0.00 0.00 2.87
4267 4868 7.274904 CCATTTGCTACAATTTTCTGTCATCAG 59.725 37.037 0.00 0.00 42.54 2.90
4274 4875 5.183904 ACAATTTTCTGTCATCAGTTAGGCC 59.816 40.000 0.00 0.00 41.91 5.19
4472 5206 6.338146 TCTTTCGTTAAGGACATGGTATCTG 58.662 40.000 0.00 0.00 34.46 2.90
4476 5210 6.280643 TCGTTAAGGACATGGTATCTGATTG 58.719 40.000 0.00 0.00 0.00 2.67
4527 5261 2.481441 TGCCACTCCTATGACCAAGAT 58.519 47.619 0.00 0.00 0.00 2.40
4584 5318 3.693085 AGTGCATTGGAGCTTATGTGAAG 59.307 43.478 0.00 0.00 34.99 3.02
4631 5365 1.133869 CCTTTCCTTTTACGCGCCG 59.866 57.895 5.73 0.00 0.00 6.46
4785 5520 3.378427 GCAGTACAAATCCACTGGAATCC 59.622 47.826 0.66 0.00 42.00 3.01
4820 5555 2.443416 GTGTTTGGGGAGGGTTATGTC 58.557 52.381 0.00 0.00 0.00 3.06
4878 5613 3.243035 TGGCAAACGACTGAATTTCACTG 60.243 43.478 0.00 0.00 0.00 3.66
4909 5644 9.801873 TTTCTTGGAGAAAACACTAAAATTCAG 57.198 29.630 0.88 0.00 40.89 3.02
4910 5645 8.519799 TCTTGGAGAAAACACTAAAATTCAGT 57.480 30.769 0.00 0.00 0.00 3.41
4913 5648 8.463930 TGGAGAAAACACTAAAATTCAGTGAT 57.536 30.769 21.02 10.71 45.10 3.06
4946 5681 7.335924 ACACCATACACTGTTAATAACCATGTC 59.664 37.037 11.18 0.00 32.65 3.06
4948 5683 8.764558 ACCATACACTGTTAATAACCATGTCTA 58.235 33.333 11.18 0.00 32.65 2.59
4951 5686 7.553881 ACACTGTTAATAACCATGTCTATGC 57.446 36.000 0.18 0.00 32.79 3.14
4952 5687 7.338710 ACACTGTTAATAACCATGTCTATGCT 58.661 34.615 0.18 0.00 32.79 3.79
4953 5688 7.280876 ACACTGTTAATAACCATGTCTATGCTG 59.719 37.037 0.18 0.00 32.79 4.41
4955 5690 7.495934 ACTGTTAATAACCATGTCTATGCTGTC 59.504 37.037 0.18 0.00 32.79 3.51
4961 5697 9.578576 AATAACCATGTCTATGCTGTCATAAAT 57.421 29.630 0.00 0.00 34.97 1.40
4977 5713 8.684386 TGTCATAAATAACAGAGACCACAAAA 57.316 30.769 0.00 0.00 0.00 2.44
5286 6034 7.637132 GCAAAGATTTTGACTCATTTTTGTGTG 59.363 33.333 5.77 0.00 0.00 3.82
5305 6058 7.713764 TGTGTGTATAGATGATTGGAAATCG 57.286 36.000 0.00 0.00 0.00 3.34
5313 6066 6.064846 AGATGATTGGAAATCGTTGCATAC 57.935 37.500 0.00 0.00 34.74 2.39
5319 6072 5.384063 TGGAAATCGTTGCATACATTGTT 57.616 34.783 0.00 0.00 28.87 2.83
5357 6115 3.414486 GGTGCACTTGGTTGTACCT 57.586 52.632 17.98 0.00 45.94 3.08
5358 6116 1.687563 GGTGCACTTGGTTGTACCTT 58.312 50.000 17.98 0.00 45.94 3.50
5359 6117 2.853705 GGTGCACTTGGTTGTACCTTA 58.146 47.619 17.98 0.00 45.94 2.69
5360 6118 2.551032 GGTGCACTTGGTTGTACCTTAC 59.449 50.000 17.98 0.00 45.94 2.34
5371 6129 3.775261 TGTACCTTACAGGACAAACCC 57.225 47.619 0.00 0.00 37.67 4.11
5473 6231 1.159285 CGTCAGAGGAATTTGCTGCA 58.841 50.000 0.00 0.00 0.00 4.41
5712 6471 0.031314 CCGACCAGGTGATCATCTCG 59.969 60.000 5.21 7.32 34.51 4.04
5721 6480 2.208431 GTGATCATCTCGCCCTTTGAG 58.792 52.381 0.00 0.00 34.72 3.02
5774 6576 7.919690 TGAATTATACAAGAATTCCTTCAGCG 58.080 34.615 0.65 0.00 40.91 5.18
5802 6610 1.135402 TGATCATCACTGTGGTCGTCG 60.135 52.381 8.11 0.00 31.76 5.12
5985 6793 1.215382 CGCGACCAAGTGATCTGGA 59.785 57.895 0.00 0.00 0.00 3.86
6031 6839 2.762006 GATGATCCGGGAGCAGAGCG 62.762 65.000 20.76 0.00 29.44 5.03
6069 6879 3.477210 AATAAAGAGGATCGGTGCTCC 57.523 47.619 14.21 0.00 43.23 4.70
6109 6919 2.200899 GTGTTGGGTGTGATTGTTTGC 58.799 47.619 0.00 0.00 0.00 3.68
6163 6973 5.185249 GCACCAGGATCCGTAAGATAAGATA 59.815 44.000 5.98 0.00 43.02 1.98
6240 7050 5.449304 GCTTTGTAACGTGCTATTCTGTTT 58.551 37.500 0.00 0.00 0.00 2.83
6267 7077 0.322008 GCCTTCTTCACTCTGGTGGG 60.322 60.000 0.00 0.00 43.17 4.61
6269 7079 1.059913 CTTCTTCACTCTGGTGGGGT 58.940 55.000 0.00 0.00 43.17 4.95
6272 7082 1.420138 TCTTCACTCTGGTGGGGTTTC 59.580 52.381 0.00 0.00 43.17 2.78
6327 7137 7.346751 TCATAATGCTTTAATCCCTCCAAAC 57.653 36.000 0.00 0.00 0.00 2.93
6379 7190 3.134623 AGCCCTTCCTTCAAAACTTTTGG 59.865 43.478 13.20 0.00 0.00 3.28
6380 7191 3.118408 GCCCTTCCTTCAAAACTTTTGGT 60.118 43.478 13.20 0.00 0.00 3.67
6381 7192 4.441792 CCCTTCCTTCAAAACTTTTGGTG 58.558 43.478 13.20 7.21 0.00 4.17
6453 7264 5.689068 CCAAATTTGCTTTGAGAAGAGTGTC 59.311 40.000 12.92 0.00 45.96 3.67
6457 7268 2.062519 GCTTTGAGAAGAGTGTCGGAC 58.937 52.381 0.00 0.00 34.71 4.79
6528 7343 8.992349 TGATTAAGAAGAAGTGAGAATATCCCA 58.008 33.333 0.00 0.00 0.00 4.37
6549 7364 3.254657 CAGTTAATTGGCGGAAAACCAGA 59.745 43.478 0.00 0.00 38.73 3.86
6557 7372 2.619646 GGCGGAAAACCAGACTAAAACA 59.380 45.455 0.00 0.00 0.00 2.83
6590 7407 2.541233 CCATAAAATGGGGGTCACCA 57.459 50.000 0.00 0.00 46.86 4.17
6599 7416 2.228480 GGGGTCACCAGCCAACCTA 61.228 63.158 0.00 0.00 42.66 3.08
6670 7497 2.945668 GAGCTTCGCAAGGGAAATATGT 59.054 45.455 1.22 0.00 38.47 2.29
6701 7528 2.668550 AGCGTGCCCTCCGAAAAC 60.669 61.111 0.00 0.00 0.00 2.43
6733 7560 2.764010 AGCCTGTTATCGTCACCACATA 59.236 45.455 0.00 0.00 0.00 2.29
6739 7567 4.142249 TGTTATCGTCACCACATAGACTGG 60.142 45.833 0.00 0.00 32.68 4.00
6745 7573 1.623311 CACCACATAGACTGGTCCACA 59.377 52.381 0.00 0.00 40.25 4.17
6790 7620 2.010582 GCAACCCACGGAAAAGCACA 62.011 55.000 0.00 0.00 0.00 4.57
6795 7625 2.159382 CCCACGGAAAAGCACATTAGT 58.841 47.619 0.00 0.00 0.00 2.24
6870 7700 2.164219 GACACCATCATCGTTGCCAAAT 59.836 45.455 0.00 0.00 0.00 2.32
6921 7751 2.642700 GCAAACCACGTGGCGAAT 59.357 55.556 34.26 15.38 39.32 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.178534 TTTTACCCAGCACCAGCAGC 61.179 55.000 0.00 0.00 45.49 5.25
18 19 0.958876 CCCGAGTTTTACCCAGCACC 60.959 60.000 0.00 0.00 0.00 5.01
20 21 1.302993 GCCCGAGTTTTACCCAGCA 60.303 57.895 0.00 0.00 0.00 4.41
24 25 1.378119 CAGGGCCCGAGTTTTACCC 60.378 63.158 18.44 0.00 41.17 3.69
38 39 1.448540 CACTGGCGCTTACTCAGGG 60.449 63.158 7.64 2.29 38.53 4.45
40 41 1.016130 CCACACTGGCGCTTACTCAG 61.016 60.000 7.64 8.33 34.91 3.35
41 42 1.005037 CCACACTGGCGCTTACTCA 60.005 57.895 7.64 0.00 0.00 3.41
42 43 1.741770 CCCACACTGGCGCTTACTC 60.742 63.158 7.64 0.00 35.79 2.59
43 44 2.347490 CCCACACTGGCGCTTACT 59.653 61.111 7.64 0.00 35.79 2.24
127 132 2.881352 GACAGTGAGCGCGGCTAC 60.881 66.667 8.83 0.00 39.88 3.58
227 235 4.803426 GTGGCGAGGCGAGTGGAG 62.803 72.222 0.00 0.00 0.00 3.86
230 238 4.803426 GAGGTGGCGAGGCGAGTG 62.803 72.222 0.00 0.00 0.00 3.51
280 293 2.101380 GTCGCTCTCGCTGTCTCC 59.899 66.667 0.00 0.00 35.26 3.71
283 296 4.838486 CCCGTCGCTCTCGCTGTC 62.838 72.222 0.00 0.00 35.26 3.51
351 389 1.321074 GGGATAGGATAGGCCGGACG 61.321 65.000 5.05 0.00 43.43 4.79
352 390 1.321074 CGGGATAGGATAGGCCGGAC 61.321 65.000 5.05 0.00 43.43 4.79
353 391 1.000019 CGGGATAGGATAGGCCGGA 60.000 63.158 5.05 0.00 43.43 5.14
354 392 2.058595 CCGGGATAGGATAGGCCGG 61.059 68.421 0.00 0.00 43.43 6.13
392 510 4.511636 GCAGTAGAGTGCAGGCTC 57.488 61.111 4.43 0.00 43.41 4.70
398 516 5.188327 TCTGTGTATATGCAGTAGAGTGC 57.812 43.478 2.23 2.23 44.27 4.40
399 517 5.532779 TCCTCTGTGTATATGCAGTAGAGTG 59.467 44.000 22.34 17.01 33.02 3.51
400 518 5.696030 TCCTCTGTGTATATGCAGTAGAGT 58.304 41.667 22.34 0.00 33.02 3.24
401 519 6.488344 TCTTCCTCTGTGTATATGCAGTAGAG 59.512 42.308 19.62 19.62 33.89 2.43
402 520 6.365520 TCTTCCTCTGTGTATATGCAGTAGA 58.634 40.000 0.00 1.02 34.57 2.59
403 521 6.641169 TCTTCCTCTGTGTATATGCAGTAG 57.359 41.667 0.00 0.00 34.57 2.57
404 522 7.342026 TCTTTCTTCCTCTGTGTATATGCAGTA 59.658 37.037 0.00 0.00 34.57 2.74
405 523 5.939764 TTCTTCCTCTGTGTATATGCAGT 57.060 39.130 0.00 0.00 34.57 4.40
406 524 6.577103 TCTTTCTTCCTCTGTGTATATGCAG 58.423 40.000 0.00 0.00 0.00 4.41
407 525 6.544928 TCTTTCTTCCTCTGTGTATATGCA 57.455 37.500 0.00 0.00 0.00 3.96
408 526 7.011857 CCTTTCTTTCTTCCTCTGTGTATATGC 59.988 40.741 0.00 0.00 0.00 3.14
409 527 7.011857 GCCTTTCTTTCTTCCTCTGTGTATATG 59.988 40.741 0.00 0.00 0.00 1.78
410 528 7.051000 GCCTTTCTTTCTTCCTCTGTGTATAT 58.949 38.462 0.00 0.00 0.00 0.86
411 529 6.013725 TGCCTTTCTTTCTTCCTCTGTGTATA 60.014 38.462 0.00 0.00 0.00 1.47
412 530 5.221925 TGCCTTTCTTTCTTCCTCTGTGTAT 60.222 40.000 0.00 0.00 0.00 2.29
413 531 4.102524 TGCCTTTCTTTCTTCCTCTGTGTA 59.897 41.667 0.00 0.00 0.00 2.90
414 532 3.117888 TGCCTTTCTTTCTTCCTCTGTGT 60.118 43.478 0.00 0.00 0.00 3.72
415 533 3.480470 TGCCTTTCTTTCTTCCTCTGTG 58.520 45.455 0.00 0.00 0.00 3.66
416 534 3.864789 TGCCTTTCTTTCTTCCTCTGT 57.135 42.857 0.00 0.00 0.00 3.41
417 535 4.823989 TCTTTGCCTTTCTTTCTTCCTCTG 59.176 41.667 0.00 0.00 0.00 3.35
418 536 5.053978 TCTTTGCCTTTCTTTCTTCCTCT 57.946 39.130 0.00 0.00 0.00 3.69
419 537 5.774498 TTCTTTGCCTTTCTTTCTTCCTC 57.226 39.130 0.00 0.00 0.00 3.71
420 538 6.544928 TTTTCTTTGCCTTTCTTTCTTCCT 57.455 33.333 0.00 0.00 0.00 3.36
421 539 7.041721 TCTTTTTCTTTGCCTTTCTTTCTTCC 58.958 34.615 0.00 0.00 0.00 3.46
422 540 8.479313 TTCTTTTTCTTTGCCTTTCTTTCTTC 57.521 30.769 0.00 0.00 0.00 2.87
423 541 8.846943 TTTCTTTTTCTTTGCCTTTCTTTCTT 57.153 26.923 0.00 0.00 0.00 2.52
424 542 8.846943 TTTTCTTTTTCTTTGCCTTTCTTTCT 57.153 26.923 0.00 0.00 0.00 2.52
425 543 9.546909 CTTTTTCTTTTTCTTTGCCTTTCTTTC 57.453 29.630 0.00 0.00 0.00 2.62
426 544 9.283768 TCTTTTTCTTTTTCTTTGCCTTTCTTT 57.716 25.926 0.00 0.00 0.00 2.52
427 545 8.846943 TCTTTTTCTTTTTCTTTGCCTTTCTT 57.153 26.923 0.00 0.00 0.00 2.52
428 546 8.846943 TTCTTTTTCTTTTTCTTTGCCTTTCT 57.153 26.923 0.00 0.00 0.00 2.52
429 547 9.891828 TTTTCTTTTTCTTTTTCTTTGCCTTTC 57.108 25.926 0.00 0.00 0.00 2.62
453 571 5.123227 TCTTCTCTTGGATCGTGTGTTTTT 58.877 37.500 0.00 0.00 0.00 1.94
454 572 4.703897 TCTTCTCTTGGATCGTGTGTTTT 58.296 39.130 0.00 0.00 0.00 2.43
455 573 4.039245 TCTCTTCTCTTGGATCGTGTGTTT 59.961 41.667 0.00 0.00 0.00 2.83
456 574 3.574396 TCTCTTCTCTTGGATCGTGTGTT 59.426 43.478 0.00 0.00 0.00 3.32
457 575 3.157881 TCTCTTCTCTTGGATCGTGTGT 58.842 45.455 0.00 0.00 0.00 3.72
458 576 3.857549 TCTCTTCTCTTGGATCGTGTG 57.142 47.619 0.00 0.00 0.00 3.82
461 579 3.699038 CCTCTTCTCTTCTCTTGGATCGT 59.301 47.826 0.00 0.00 0.00 3.73
506 624 2.432123 GAATCCCCCGCTGGATCC 59.568 66.667 4.20 4.20 44.49 3.36
525 643 1.912371 GAGGCCCGAGCAAAACGAAG 61.912 60.000 0.00 0.00 42.56 3.79
644 770 1.202452 TGTGCTGTGTGTGTCTCTCTG 60.202 52.381 0.00 0.00 0.00 3.35
645 771 1.114627 TGTGCTGTGTGTGTCTCTCT 58.885 50.000 0.00 0.00 0.00 3.10
646 772 1.202463 AGTGTGCTGTGTGTGTCTCTC 60.202 52.381 0.00 0.00 0.00 3.20
647 773 0.826715 AGTGTGCTGTGTGTGTCTCT 59.173 50.000 0.00 0.00 0.00 3.10
648 774 1.202463 AGAGTGTGCTGTGTGTGTCTC 60.202 52.381 0.00 0.00 0.00 3.36
649 775 0.826715 AGAGTGTGCTGTGTGTGTCT 59.173 50.000 0.00 0.00 0.00 3.41
650 776 1.328680 CAAGAGTGTGCTGTGTGTGTC 59.671 52.381 0.00 0.00 0.00 3.67
651 777 1.372582 CAAGAGTGTGCTGTGTGTGT 58.627 50.000 0.00 0.00 0.00 3.72
675 832 3.881019 AACGACCAGGGAGCGGAGA 62.881 63.158 0.00 0.00 0.00 3.71
676 833 3.358076 GAACGACCAGGGAGCGGAG 62.358 68.421 0.00 0.00 0.00 4.63
677 834 3.379445 GAACGACCAGGGAGCGGA 61.379 66.667 0.00 0.00 0.00 5.54
680 837 3.644399 GACCGAACGACCAGGGAGC 62.644 68.421 0.00 0.00 0.00 4.70
880 1070 1.311651 TGTGGTGTGTGTGTTGGCTG 61.312 55.000 0.00 0.00 0.00 4.85
881 1071 1.001517 TGTGGTGTGTGTGTTGGCT 60.002 52.632 0.00 0.00 0.00 4.75
882 1072 1.138671 GTGTGGTGTGTGTGTTGGC 59.861 57.895 0.00 0.00 0.00 4.52
883 1073 0.679640 AGGTGTGGTGTGTGTGTTGG 60.680 55.000 0.00 0.00 0.00 3.77
884 1074 1.132262 GAAGGTGTGGTGTGTGTGTTG 59.868 52.381 0.00 0.00 0.00 3.33
885 1075 1.004277 AGAAGGTGTGGTGTGTGTGTT 59.996 47.619 0.00 0.00 0.00 3.32
886 1076 0.618458 AGAAGGTGTGGTGTGTGTGT 59.382 50.000 0.00 0.00 0.00 3.72
887 1077 1.750193 AAGAAGGTGTGGTGTGTGTG 58.250 50.000 0.00 0.00 0.00 3.82
888 1078 3.275999 GTTAAGAAGGTGTGGTGTGTGT 58.724 45.455 0.00 0.00 0.00 3.72
889 1079 3.275143 TGTTAAGAAGGTGTGGTGTGTG 58.725 45.455 0.00 0.00 0.00 3.82
890 1080 3.637911 TGTTAAGAAGGTGTGGTGTGT 57.362 42.857 0.00 0.00 0.00 3.72
891 1081 3.692101 TGTTGTTAAGAAGGTGTGGTGTG 59.308 43.478 0.00 0.00 0.00 3.82
892 1082 3.958018 TGTTGTTAAGAAGGTGTGGTGT 58.042 40.909 0.00 0.00 0.00 4.16
893 1083 4.974368 TTGTTGTTAAGAAGGTGTGGTG 57.026 40.909 0.00 0.00 0.00 4.17
894 1084 4.767928 TGTTTGTTGTTAAGAAGGTGTGGT 59.232 37.500 0.00 0.00 0.00 4.16
895 1085 5.099575 GTGTTTGTTGTTAAGAAGGTGTGG 58.900 41.667 0.00 0.00 0.00 4.17
935 1125 2.048503 GGGGAGTGTCGTCGTTGG 60.049 66.667 0.00 0.00 0.00 3.77
938 1128 3.681835 GCAGGGGAGTGTCGTCGT 61.682 66.667 0.00 0.00 0.00 4.34
939 1129 3.343788 GAGCAGGGGAGTGTCGTCG 62.344 68.421 0.00 0.00 0.00 5.12
940 1130 2.574399 GAGCAGGGGAGTGTCGTC 59.426 66.667 0.00 0.00 0.00 4.20
941 1131 2.997897 GGAGCAGGGGAGTGTCGT 60.998 66.667 0.00 0.00 0.00 4.34
942 1132 3.775654 GGGAGCAGGGGAGTGTCG 61.776 72.222 0.00 0.00 0.00 4.35
943 1133 1.904990 GAAGGGAGCAGGGGAGTGTC 61.905 65.000 0.00 0.00 0.00 3.67
944 1134 1.920835 GAAGGGAGCAGGGGAGTGT 60.921 63.158 0.00 0.00 0.00 3.55
945 1135 2.674220 GGAAGGGAGCAGGGGAGTG 61.674 68.421 0.00 0.00 0.00 3.51
966 1176 4.668289 GTTTCAAAGTTTTTCAGAGGCGA 58.332 39.130 0.00 0.00 0.00 5.54
1040 1259 1.153597 ACGAACAACGAAACGGGACC 61.154 55.000 0.00 0.00 45.77 4.46
1042 1261 1.208009 CGACGAACAACGAAACGGGA 61.208 55.000 0.00 0.00 45.77 5.14
1043 1262 1.199859 CGACGAACAACGAAACGGG 59.800 57.895 0.00 0.00 45.77 5.28
1044 1263 1.199859 CCGACGAACAACGAAACGG 59.800 57.895 0.00 0.00 45.77 4.44
1046 1265 0.230515 GACCCGACGAACAACGAAAC 59.769 55.000 0.00 0.00 45.77 2.78
1047 1266 1.208009 CGACCCGACGAACAACGAAA 61.208 55.000 0.00 0.00 45.77 3.46
1048 1267 1.658102 CGACCCGACGAACAACGAA 60.658 57.895 0.00 0.00 45.77 3.85
1054 1299 2.442188 GCATCACGACCCGACGAAC 61.442 63.158 0.00 0.00 37.03 3.95
1055 1300 2.126228 GCATCACGACCCGACGAA 60.126 61.111 0.00 0.00 37.03 3.85
1095 1340 1.748879 AATCAACCCATCGGCCACG 60.749 57.895 2.24 0.00 42.74 4.94
1112 1357 0.179202 GCACGCACACGCATAATCAA 60.179 50.000 0.00 0.00 45.53 2.57
1263 1508 0.759346 GGATGATTGGCCGTACCTCT 59.241 55.000 0.00 0.00 40.22 3.69
1271 1516 2.560105 GGATTAGCAAGGATGATTGGCC 59.440 50.000 0.00 0.00 0.00 5.36
1285 1539 3.463048 AATGGATGGGATGGGATTAGC 57.537 47.619 0.00 0.00 0.00 3.09
1286 1540 4.012374 CGAAATGGATGGGATGGGATTAG 58.988 47.826 0.00 0.00 0.00 1.73
1288 1542 2.880443 CGAAATGGATGGGATGGGATT 58.120 47.619 0.00 0.00 0.00 3.01
1289 1543 1.548582 GCGAAATGGATGGGATGGGAT 60.549 52.381 0.00 0.00 0.00 3.85
1291 1545 0.178981 AGCGAAATGGATGGGATGGG 60.179 55.000 0.00 0.00 0.00 4.00
1292 1546 0.956633 CAGCGAAATGGATGGGATGG 59.043 55.000 0.00 0.00 0.00 3.51
1297 1553 1.065273 GCAGCAGCGAAATGGATGG 59.935 57.895 0.00 0.00 0.00 3.51
1306 1562 1.139654 AGATTAATCTGGCAGCAGCGA 59.860 47.619 17.26 0.00 43.41 4.93
1358 1614 5.412594 TGTACGAGTAGAAAAGATGTACGGT 59.587 40.000 0.00 0.00 34.85 4.83
1391 1647 6.931838 ACGTATCATCACTACTCCTCAAAAA 58.068 36.000 0.00 0.00 0.00 1.94
1392 1648 6.525578 ACGTATCATCACTACTCCTCAAAA 57.474 37.500 0.00 0.00 0.00 2.44
1393 1649 6.238293 CGTACGTATCATCACTACTCCTCAAA 60.238 42.308 7.22 0.00 0.00 2.69
1394 1650 5.235831 CGTACGTATCATCACTACTCCTCAA 59.764 44.000 7.22 0.00 0.00 3.02
1395 1651 4.748600 CGTACGTATCATCACTACTCCTCA 59.251 45.833 7.22 0.00 0.00 3.86
1396 1652 4.377226 GCGTACGTATCATCACTACTCCTC 60.377 50.000 17.90 0.00 0.00 3.71
1397 1653 3.497640 GCGTACGTATCATCACTACTCCT 59.502 47.826 17.90 0.00 0.00 3.69
1398 1654 3.663754 CGCGTACGTATCATCACTACTCC 60.664 52.174 17.90 0.00 33.53 3.85
1399 1655 3.467766 CGCGTACGTATCATCACTACTC 58.532 50.000 17.90 0.00 33.53 2.59
1400 1656 3.516681 CGCGTACGTATCATCACTACT 57.483 47.619 17.90 0.00 33.53 2.57
1476 1734 1.336148 ACGAGTGTACGAAAATGGCGA 60.336 47.619 0.00 0.00 37.03 5.54
1477 1735 1.065358 ACGAGTGTACGAAAATGGCG 58.935 50.000 0.00 0.00 37.03 5.69
1491 1752 2.430244 CGCCGCAACAGTACGAGT 60.430 61.111 0.00 0.00 0.00 4.18
1597 1887 3.877559 TGGACGTTAACGATCTAGGAGA 58.122 45.455 33.06 5.98 43.02 3.71
1598 1888 4.096081 ACTTGGACGTTAACGATCTAGGAG 59.904 45.833 33.06 19.19 43.02 3.69
1599 1889 4.012374 ACTTGGACGTTAACGATCTAGGA 58.988 43.478 33.06 10.47 43.02 2.94
1600 1890 4.103357 CACTTGGACGTTAACGATCTAGG 58.897 47.826 33.06 23.35 43.02 3.02
1601 1891 3.546670 GCACTTGGACGTTAACGATCTAG 59.453 47.826 33.06 26.42 43.02 2.43
1602 1892 3.192001 AGCACTTGGACGTTAACGATCTA 59.808 43.478 33.06 20.36 43.02 1.98
1603 1893 2.029290 AGCACTTGGACGTTAACGATCT 60.029 45.455 33.06 12.28 43.02 2.75
1604 1894 2.092211 CAGCACTTGGACGTTAACGATC 59.908 50.000 33.06 23.73 43.02 3.69
1605 1895 2.066262 CAGCACTTGGACGTTAACGAT 58.934 47.619 33.06 17.64 43.02 3.73
1606 1896 1.493772 CAGCACTTGGACGTTAACGA 58.506 50.000 33.06 9.48 43.02 3.85
1652 1953 4.133820 CGCCCCAAAAGAAAAGGAAAAAT 58.866 39.130 0.00 0.00 0.00 1.82
1654 1955 2.502130 ACGCCCCAAAAGAAAAGGAAAA 59.498 40.909 0.00 0.00 0.00 2.29
1658 1959 1.000274 CTGACGCCCCAAAAGAAAAGG 60.000 52.381 0.00 0.00 0.00 3.11
1671 1973 3.643159 AAAAGAAATCCAACTGACGCC 57.357 42.857 0.00 0.00 0.00 5.68
1749 2051 4.008916 ACCTATCAGCCTTTTAGGGAGA 57.991 45.455 0.00 0.00 37.42 3.71
1864 2177 2.231235 CCATTGGTTTACCTGTCAAGCC 59.769 50.000 0.00 0.00 36.82 4.35
1866 2179 2.890311 TGCCATTGGTTTACCTGTCAAG 59.110 45.455 4.26 0.00 36.82 3.02
1922 2235 7.560626 TGTAATCATCATGATGGAAATGGACAA 59.439 33.333 30.54 11.55 37.15 3.18
1935 2248 9.022884 TGAGTTGGATTTTTGTAATCATCATGA 57.977 29.630 0.00 0.00 0.00 3.07
1938 2251 9.246670 AGATGAGTTGGATTTTTGTAATCATCA 57.753 29.630 12.35 0.00 41.75 3.07
1939 2252 9.727627 GAGATGAGTTGGATTTTTGTAATCATC 57.272 33.333 0.00 0.00 40.36 2.92
1965 2278 3.327757 TGAGGGGCAGTGGCTAATATTAG 59.672 47.826 17.16 16.79 40.87 1.73
1966 2279 3.322862 TGAGGGGCAGTGGCTAATATTA 58.677 45.455 17.16 0.00 40.87 0.98
1967 2280 2.135189 TGAGGGGCAGTGGCTAATATT 58.865 47.619 17.16 0.00 40.87 1.28
1968 2281 1.819753 TGAGGGGCAGTGGCTAATAT 58.180 50.000 17.16 0.00 40.87 1.28
1969 2282 1.590591 TTGAGGGGCAGTGGCTAATA 58.409 50.000 17.16 0.00 40.87 0.98
1970 2283 0.704076 TTTGAGGGGCAGTGGCTAAT 59.296 50.000 17.16 2.53 40.87 1.73
1971 2284 0.704076 ATTTGAGGGGCAGTGGCTAA 59.296 50.000 17.16 4.59 40.87 3.09
1972 2285 0.034186 CATTTGAGGGGCAGTGGCTA 60.034 55.000 17.16 0.00 40.87 3.93
1973 2286 1.304713 CATTTGAGGGGCAGTGGCT 60.305 57.895 17.16 0.00 40.87 4.75
1974 2287 0.899717 TTCATTTGAGGGGCAGTGGC 60.900 55.000 8.47 8.47 40.13 5.01
1975 2288 1.856629 ATTCATTTGAGGGGCAGTGG 58.143 50.000 0.00 0.00 0.00 4.00
1976 2289 4.220382 TGTTTATTCATTTGAGGGGCAGTG 59.780 41.667 0.00 0.00 0.00 3.66
1977 2290 4.415596 TGTTTATTCATTTGAGGGGCAGT 58.584 39.130 0.00 0.00 0.00 4.40
1978 2291 5.404466 TTGTTTATTCATTTGAGGGGCAG 57.596 39.130 0.00 0.00 0.00 4.85
1979 2292 5.815233 TTTGTTTATTCATTTGAGGGGCA 57.185 34.783 0.00 0.00 0.00 5.36
1980 2293 6.643388 AGATTTGTTTATTCATTTGAGGGGC 58.357 36.000 0.00 0.00 0.00 5.80
2027 2340 0.808755 CGGCCAAAGAAAACGGCTAT 59.191 50.000 2.24 0.00 45.50 2.97
2032 2345 0.378962 TGTGTCGGCCAAAGAAAACG 59.621 50.000 2.24 0.00 0.00 3.60
2038 2351 1.135257 TGTTGTTTGTGTCGGCCAAAG 60.135 47.619 2.24 0.00 32.79 2.77
2039 2352 0.888619 TGTTGTTTGTGTCGGCCAAA 59.111 45.000 2.24 0.37 0.00 3.28
2083 2396 9.924650 ACAAGACGTTTTAGATCACTATAAAGT 57.075 29.630 0.00 0.00 36.05 2.66
2089 2402 9.754382 ACTTTTACAAGACGTTTTAGATCACTA 57.246 29.630 0.00 0.00 33.72 2.74
2090 2403 8.658499 ACTTTTACAAGACGTTTTAGATCACT 57.342 30.769 0.00 0.00 33.72 3.41
2091 2404 9.712359 AAACTTTTACAAGACGTTTTAGATCAC 57.288 29.630 0.00 0.00 33.72 3.06
2124 2437 5.491078 AGTTGATCCCCTTCCAACATACTTA 59.509 40.000 0.00 0.00 41.72 2.24
2262 2581 3.254060 CGACTTGACTACCCATGTTCAG 58.746 50.000 0.00 0.00 0.00 3.02
2264 2583 3.251571 GACGACTTGACTACCCATGTTC 58.748 50.000 0.00 0.00 0.00 3.18
2272 2591 2.921754 CCCAATTCGACGACTTGACTAC 59.078 50.000 24.48 0.00 0.00 2.73
2293 2613 7.800380 CACAAAATATAAAGATCAGATCACCGC 59.200 37.037 13.14 0.00 0.00 5.68
2364 2684 5.301298 GCTGCCTTTAATGATCTCCATTTCT 59.699 40.000 0.00 0.00 42.55 2.52
2366 2686 4.957954 TGCTGCCTTTAATGATCTCCATTT 59.042 37.500 0.00 0.00 42.55 2.32
2367 2687 4.340381 GTGCTGCCTTTAATGATCTCCATT 59.660 41.667 0.00 0.00 46.52 3.16
2376 2696 8.190122 TGTCATTTTATAGTGCTGCCTTTAATG 58.810 33.333 0.00 0.00 0.00 1.90
2475 2797 3.574396 TGTTGTTGTTGTTGTTGAGGGAA 59.426 39.130 0.00 0.00 0.00 3.97
2476 2798 3.157881 TGTTGTTGTTGTTGTTGAGGGA 58.842 40.909 0.00 0.00 0.00 4.20
2477 2799 3.584406 TGTTGTTGTTGTTGTTGAGGG 57.416 42.857 0.00 0.00 0.00 4.30
2478 2800 4.302455 TGTTGTTGTTGTTGTTGTTGAGG 58.698 39.130 0.00 0.00 0.00 3.86
2479 2801 5.896922 TTGTTGTTGTTGTTGTTGTTGAG 57.103 34.783 0.00 0.00 0.00 3.02
2480 2802 6.662414 TTTTGTTGTTGTTGTTGTTGTTGA 57.338 29.167 0.00 0.00 0.00 3.18
2506 2828 9.561069 ACACTCAAATATTCTCTACAAGTGTTT 57.439 29.630 0.00 0.00 41.29 2.83
2507 2829 8.993121 CACACTCAAATATTCTCTACAAGTGTT 58.007 33.333 0.00 0.00 41.94 3.32
2508 2830 8.150945 ACACACTCAAATATTCTCTACAAGTGT 58.849 33.333 0.00 0.00 43.95 3.55
2509 2831 8.539770 ACACACTCAAATATTCTCTACAAGTG 57.460 34.615 0.00 0.00 38.02 3.16
2510 2832 8.367911 TGACACACTCAAATATTCTCTACAAGT 58.632 33.333 0.00 0.00 0.00 3.16
2511 2833 8.651588 GTGACACACTCAAATATTCTCTACAAG 58.348 37.037 0.00 0.00 0.00 3.16
2512 2834 8.367911 AGTGACACACTCAAATATTCTCTACAA 58.632 33.333 8.59 0.00 41.21 2.41
2513 2835 7.896811 AGTGACACACTCAAATATTCTCTACA 58.103 34.615 8.59 0.00 41.21 2.74
2529 2851 2.996621 GGCTCAGTAATGAGTGACACAC 59.003 50.000 20.40 1.67 38.16 3.82
2541 2863 4.997395 GTCAATTCAGTTCAGGCTCAGTAA 59.003 41.667 0.00 0.00 0.00 2.24
2560 2894 1.699083 TGAGAGTGGCAAGATGGTCAA 59.301 47.619 0.00 0.00 0.00 3.18
2595 2932 4.085357 TCCCACATATGCATCCACTAAC 57.915 45.455 0.19 0.00 0.00 2.34
2620 2957 4.340617 TCCACCACTCACTTTCACTTTTT 58.659 39.130 0.00 0.00 0.00 1.94
2621 2958 3.947834 CTCCACCACTCACTTTCACTTTT 59.052 43.478 0.00 0.00 0.00 2.27
2622 2959 3.199946 TCTCCACCACTCACTTTCACTTT 59.800 43.478 0.00 0.00 0.00 2.66
2643 2980 7.592938 TGAATATGTTCTGTTGTTCCAACATC 58.407 34.615 9.96 3.86 39.58 3.06
2676 3013 2.040012 TGGTAAGGTGCCAATTCCGTTA 59.960 45.455 0.00 0.00 32.29 3.18
2715 3061 2.148446 TGGATGCCATTTTGGAGGAG 57.852 50.000 0.00 0.00 40.96 3.69
2718 3064 1.207811 GGGTTGGATGCCATTTTGGAG 59.792 52.381 0.00 0.00 40.96 3.86
2778 3124 4.563061 TCTGAAGTGATGATCAGTGTGTG 58.437 43.478 3.11 0.00 28.97 3.82
2779 3125 4.879197 TCTGAAGTGATGATCAGTGTGT 57.121 40.909 3.11 0.00 28.97 3.72
2780 3126 5.467735 TGTTTCTGAAGTGATGATCAGTGTG 59.532 40.000 3.11 0.00 28.97 3.82
2784 3130 5.123344 TGCATGTTTCTGAAGTGATGATCAG 59.877 40.000 0.09 0.00 0.00 2.90
2796 3142 4.081406 AGTAATTGGCTGCATGTTTCTGA 58.919 39.130 0.50 0.00 0.00 3.27
2803 3149 5.503662 TTGTGATAGTAATTGGCTGCATG 57.496 39.130 0.50 0.00 0.00 4.06
2815 3161 5.221521 CCTCTATGGCTGCTTTGTGATAGTA 60.222 44.000 0.00 0.00 0.00 1.82
2817 3163 4.063689 CCTCTATGGCTGCTTTGTGATAG 58.936 47.826 0.00 0.00 0.00 2.08
2831 3177 1.153168 CCGTTGTGCCCCTCTATGG 60.153 63.158 0.00 0.00 0.00 2.74
2858 3204 0.322098 CCACACCATACTTTCGGCCA 60.322 55.000 2.24 0.00 0.00 5.36
2863 3209 4.024893 CGATGTATGCCACACCATACTTTC 60.025 45.833 12.01 8.72 44.90 2.62
2873 3219 0.033366 CGATCCCGATGTATGCCACA 59.967 55.000 0.00 0.00 42.69 4.17
2881 3227 2.202878 CGTTGCCGATCCCGATGT 60.203 61.111 0.00 0.00 38.22 3.06
2894 3240 9.314321 ACATAAAGAATACACTATCCTTCGTTG 57.686 33.333 0.00 0.00 0.00 4.10
2905 3257 9.632638 AGCCAAATATCACATAAAGAATACACT 57.367 29.630 0.00 0.00 0.00 3.55
2906 3258 9.669353 CAGCCAAATATCACATAAAGAATACAC 57.331 33.333 0.00 0.00 0.00 2.90
2907 3259 8.352201 GCAGCCAAATATCACATAAAGAATACA 58.648 33.333 0.00 0.00 0.00 2.29
2908 3260 8.352201 TGCAGCCAAATATCACATAAAGAATAC 58.648 33.333 0.00 0.00 0.00 1.89
3005 3378 7.739444 AGGGGTGATAGTTTATATGAGGAATCA 59.261 37.037 0.00 0.00 0.00 2.57
3039 3412 3.423154 CGCCGGAGTTGGTGAAGC 61.423 66.667 5.05 0.00 42.25 3.86
3124 3497 2.717044 TACCACCATGCGGTCCTCG 61.717 63.158 8.22 0.00 44.71 4.63
3197 3570 2.528818 GGGCGATGATGGGATGGGA 61.529 63.158 0.00 0.00 0.00 4.37
3198 3571 2.034687 GGGCGATGATGGGATGGG 59.965 66.667 0.00 0.00 0.00 4.00
3199 3572 1.303074 CAGGGCGATGATGGGATGG 60.303 63.158 0.00 0.00 0.00 3.51
3200 3573 1.970114 GCAGGGCGATGATGGGATG 60.970 63.158 0.00 0.00 0.00 3.51
3201 3574 2.121992 GAGCAGGGCGATGATGGGAT 62.122 60.000 0.00 0.00 0.00 3.85
3290 3690 2.612746 TCCTTGGTACCCTGCCCC 60.613 66.667 10.07 0.00 0.00 5.80
3330 3730 1.021202 AAGCTGATCTCTCTCGACCG 58.979 55.000 0.00 0.00 0.00 4.79
3376 3776 3.041469 GCCAGCCTCTCCTCCTTGG 62.041 68.421 0.00 0.00 37.10 3.61
3389 3789 1.078567 CTCTTCCACCTCTGCCAGC 60.079 63.158 0.00 0.00 0.00 4.85
3491 3924 1.065551 GGAAACAAGCACCACTGTGTC 59.934 52.381 7.08 0.00 44.65 3.67
3497 3930 1.102978 ACACTGGAAACAAGCACCAC 58.897 50.000 0.00 0.00 42.06 4.16
3513 3946 5.175859 TCCACTGCATAAGTAAAGCTACAC 58.824 41.667 0.00 0.00 36.83 2.90
3586 4019 1.446966 GAGCTCCAGCACCGTCTTC 60.447 63.158 0.87 0.00 45.16 2.87
3699 4140 3.055094 TGAGGCAAGAAAAGGTAGCTAGG 60.055 47.826 0.00 0.00 0.00 3.02
3795 4246 2.662006 TTGATCTCCTCGTTCTGCAG 57.338 50.000 7.63 7.63 0.00 4.41
3893 4344 2.029020 CCAGTTGGAGAAGACGATGTCA 60.029 50.000 0.00 0.00 37.39 3.58
3978 4429 6.435277 AGCAAATTCTTCTAAGCTCCAATCAA 59.565 34.615 0.00 0.00 0.00 2.57
3984 4435 5.414144 ACTGAAGCAAATTCTTCTAAGCTCC 59.586 40.000 8.02 0.00 42.15 4.70
3985 4436 6.493449 ACTGAAGCAAATTCTTCTAAGCTC 57.507 37.500 8.02 0.00 42.15 4.09
3986 4437 6.936900 TGTACTGAAGCAAATTCTTCTAAGCT 59.063 34.615 8.02 0.00 42.15 3.74
3987 4438 7.133891 TGTACTGAAGCAAATTCTTCTAAGC 57.866 36.000 8.02 0.00 42.15 3.09
3988 4439 9.950680 TTTTGTACTGAAGCAAATTCTTCTAAG 57.049 29.630 8.02 2.16 42.15 2.18
3990 4441 8.898761 TGTTTTGTACTGAAGCAAATTCTTCTA 58.101 29.630 8.02 0.00 42.15 2.10
3992 4443 7.915397 TCTGTTTTGTACTGAAGCAAATTCTTC 59.085 33.333 0.00 0.94 42.04 2.87
3994 4445 7.333528 TCTGTTTTGTACTGAAGCAAATTCT 57.666 32.000 0.00 0.00 38.83 2.40
3998 4449 6.449635 ACATCTGTTTTGTACTGAAGCAAA 57.550 33.333 0.00 0.00 38.09 3.68
3999 4450 6.540551 TGTACATCTGTTTTGTACTGAAGCAA 59.459 34.615 13.33 0.00 46.16 3.91
4001 4452 6.202954 ACTGTACATCTGTTTTGTACTGAAGC 59.797 38.462 20.45 0.00 46.16 3.86
4023 4474 9.538508 ACCTACAGTAACAAAAAGTTAGTACTG 57.461 33.333 5.39 7.01 42.95 2.74
4027 4478 9.106070 CTCAACCTACAGTAACAAAAAGTTAGT 57.894 33.333 0.00 0.00 45.10 2.24
4028 4479 9.321562 TCTCAACCTACAGTAACAAAAAGTTAG 57.678 33.333 0.00 0.00 43.06 2.34
4029 4480 9.669887 TTCTCAACCTACAGTAACAAAAAGTTA 57.330 29.630 0.00 0.00 41.64 2.24
4031 4482 7.201705 GCTTCTCAACCTACAGTAACAAAAAGT 60.202 37.037 0.00 0.00 0.00 2.66
4038 4489 5.135508 TCAGCTTCTCAACCTACAGTAAC 57.864 43.478 0.00 0.00 0.00 2.50
4039 4490 6.166279 CAATCAGCTTCTCAACCTACAGTAA 58.834 40.000 0.00 0.00 0.00 2.24
4224 4825 0.991146 TGGAAGCAGATTACAGGGCA 59.009 50.000 0.00 0.00 0.00 5.36
4267 4868 8.195436 GGTTTGAATTAAGGAAATAGGCCTAAC 58.805 37.037 18.42 11.18 33.76 2.34
4527 5261 4.082125 GAGAAAGCTCAAAGGAATTCCCA 58.918 43.478 21.22 2.00 40.96 4.37
4584 5318 2.810852 CTGGTTCTGGTTCTTCTTGCTC 59.189 50.000 0.00 0.00 0.00 4.26
4631 5365 7.754924 ACAACACCGATATGAACAAATGATTTC 59.245 33.333 0.00 0.00 0.00 2.17
4820 5555 2.819595 CCGAATCCACCGGTGCTG 60.820 66.667 29.75 16.73 41.91 4.41
4908 5643 7.676947 ACAGTGTATGGTGTAGTAAAATCACT 58.323 34.615 0.00 0.00 33.62 3.41
4909 5644 7.900782 ACAGTGTATGGTGTAGTAAAATCAC 57.099 36.000 0.00 0.00 0.00 3.06
4910 5645 9.999660 TTAACAGTGTATGGTGTAGTAAAATCA 57.000 29.630 0.00 0.00 0.00 2.57
4946 5681 7.928167 TGGTCTCTGTTATTTATGACAGCATAG 59.072 37.037 9.16 3.64 42.24 2.23
4948 5683 6.540189 GTGGTCTCTGTTATTTATGACAGCAT 59.460 38.462 9.16 0.00 42.24 3.79
4951 5686 7.905604 TTGTGGTCTCTGTTATTTATGACAG 57.094 36.000 8.01 8.01 43.42 3.51
4952 5687 8.684386 TTTTGTGGTCTCTGTTATTTATGACA 57.316 30.769 0.00 0.00 0.00 3.58
4953 5688 8.999431 TCTTTTGTGGTCTCTGTTATTTATGAC 58.001 33.333 0.00 0.00 0.00 3.06
4977 5713 3.228188 TCCAGCTTGTCCACAAATTCT 57.772 42.857 0.00 0.00 35.15 2.40
5049 5785 3.327757 AGGTTTCAGCCATGTAGAAGTCA 59.672 43.478 0.00 0.00 0.00 3.41
5269 6005 9.500785 TCATCTATACACACAAAAATGAGTCAA 57.499 29.630 0.00 0.00 0.00 3.18
5286 6034 7.189693 TGCAACGATTTCCAATCATCTATAC 57.810 36.000 0.00 0.00 0.00 1.47
5305 6058 6.783892 ACCATTTGAAACAATGTATGCAAC 57.216 33.333 0.00 0.00 0.00 4.17
5313 6066 6.757947 ACTTGTCAGAACCATTTGAAACAATG 59.242 34.615 0.00 0.00 0.00 2.82
5319 6072 4.097741 CACCACTTGTCAGAACCATTTGAA 59.902 41.667 0.00 0.00 0.00 2.69
5356 6114 1.002087 AGAGCGGGTTTGTCCTGTAAG 59.998 52.381 0.00 0.00 44.16 2.34
5357 6115 1.053424 AGAGCGGGTTTGTCCTGTAA 58.947 50.000 0.00 0.00 44.16 2.41
5358 6116 0.320374 CAGAGCGGGTTTGTCCTGTA 59.680 55.000 0.00 0.00 44.16 2.74
5359 6117 1.071471 CAGAGCGGGTTTGTCCTGT 59.929 57.895 0.00 0.00 44.16 4.00
5360 6118 0.535102 AACAGAGCGGGTTTGTCCTG 60.535 55.000 3.74 0.00 45.06 3.86
5371 6129 3.804325 TGAAGAAGTTTCTGAACAGAGCG 59.196 43.478 4.72 0.00 38.88 5.03
5455 6213 3.691118 TGTATGCAGCAAATTCCTCTGAC 59.309 43.478 0.00 0.00 0.00 3.51
5473 6231 4.837298 TCATAGCCTCTCTGCTTGATGTAT 59.163 41.667 0.00 0.00 42.75 2.29
5506 6264 3.611766 ACCTTTCCATAGGTCTTCACG 57.388 47.619 0.00 0.00 45.44 4.35
5712 6471 1.574263 AGGACTAGGACTCAAAGGGC 58.426 55.000 0.00 0.00 0.00 5.19
5721 6480 4.753610 GGTGTACACAAAAAGGACTAGGAC 59.246 45.833 26.51 0.44 0.00 3.85
5766 6568 2.200067 GATCATGTCAGTCGCTGAAGG 58.800 52.381 10.46 4.84 42.46 3.46
5774 6576 3.869832 CCACAGTGATGATCATGTCAGTC 59.130 47.826 14.30 0.00 40.92 3.51
6006 6814 3.881092 CTCCCGGATCATCGCGTCG 62.881 68.421 0.73 0.00 0.00 5.12
6031 6839 9.717892 CTCTTTATTTATTTCTTAACCGAAGCC 57.282 33.333 0.00 0.00 34.87 4.35
6086 6896 1.398692 ACAATCACACCCAACACCAC 58.601 50.000 0.00 0.00 0.00 4.16
6087 6897 2.151502 AACAATCACACCCAACACCA 57.848 45.000 0.00 0.00 0.00 4.17
6088 6898 2.820330 CAAACAATCACACCCAACACC 58.180 47.619 0.00 0.00 0.00 4.16
6163 6973 2.746269 ACAGCACGTACGTACACATTT 58.254 42.857 22.34 0.00 0.00 2.32
6240 7050 1.544691 GAGTGAAGAAGGCCACGTAGA 59.455 52.381 5.01 0.00 38.26 2.59
6327 7137 7.273381 CGGTTGTTAATTCCTCAAAGCTAAATG 59.727 37.037 0.00 0.00 0.00 2.32
6397 7208 6.316390 GTCGGTATGTTTTGGAGAATGAGAAT 59.684 38.462 0.00 0.00 0.00 2.40
6400 7211 4.935205 TGTCGGTATGTTTTGGAGAATGAG 59.065 41.667 0.00 0.00 0.00 2.90
6480 7294 6.580788 TCAATGAAAATGGCAAGTCTTTTGA 58.419 32.000 1.54 6.02 0.00 2.69
6523 7338 2.818751 TTCCGCCAATTAACTGGGAT 57.181 45.000 4.90 0.00 36.92 3.85
6524 7339 2.559231 GTTTTCCGCCAATTAACTGGGA 59.441 45.455 4.90 0.00 36.92 4.37
6528 7343 3.254903 GTCTGGTTTTCCGCCAATTAACT 59.745 43.478 0.00 0.00 44.36 2.24
6549 7364 5.074804 GGGTTGGGTTGTATCTGTTTTAGT 58.925 41.667 0.00 0.00 0.00 2.24
6557 7372 5.660864 CCATTTTATGGGTTGGGTTGTATCT 59.339 40.000 0.00 0.00 46.86 1.98
6583 7400 1.377333 GCTAGGTTGGCTGGTGACC 60.377 63.158 0.00 0.00 0.00 4.02
6585 7402 1.422977 TTGGCTAGGTTGGCTGGTGA 61.423 55.000 0.00 0.00 0.00 4.02
6590 7407 0.895559 GCTTGTTGGCTAGGTTGGCT 60.896 55.000 0.00 0.00 0.00 4.75
6599 7416 0.963962 CATCTGTTGGCTTGTTGGCT 59.036 50.000 0.00 0.00 42.34 4.75
6697 7524 1.301479 GGCTCTCGGTGGTCGTTTT 60.301 57.895 0.00 0.00 40.32 2.43
6701 7528 1.592400 TAACAGGCTCTCGGTGGTCG 61.592 60.000 0.00 0.00 40.90 4.79
6733 7560 1.825281 GAGCTGCTGTGGACCAGTCT 61.825 60.000 7.01 0.00 43.55 3.24
6739 7567 2.433318 GTCGGAGCTGCTGTGGAC 60.433 66.667 7.01 7.72 0.00 4.02
6745 7573 0.952984 GCTTTGAAGTCGGAGCTGCT 60.953 55.000 0.00 0.00 32.54 4.24
6790 7620 1.137675 GGTCTTCCCGGCGTAACTAAT 59.862 52.381 6.01 0.00 0.00 1.73
6870 7700 1.618876 TTCGGGGGCGCTGATTTCTA 61.619 55.000 14.33 0.00 0.00 2.10
6921 7751 3.056458 CCGGTAGATGGCGGCATA 58.944 61.111 25.86 7.49 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.