Multiple sequence alignment - TraesCS1B01G388000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G388000 chr1B 100.000 2651 0 0 1 2651 622182020 622179370 0.000000e+00 4896.0
1 TraesCS1B01G388000 chr1B 100.000 61 0 0 2954 3014 622158243 622158183 2.460000e-21 113.0
2 TraesCS1B01G388000 chr1B 100.000 61 0 0 2954 3014 622179067 622179007 2.460000e-21 113.0
3 TraesCS1B01G388000 chr1D 92.494 1359 54 36 611 1963 452346302 452347618 0.000000e+00 1901.0
4 TraesCS1B01G388000 chr1D 91.111 270 17 2 142 405 13854619 13854351 2.860000e-95 359.0
5 TraesCS1B01G388000 chr1D 90.370 270 19 2 142 405 14002813 14002545 6.180000e-92 348.0
6 TraesCS1B01G388000 chr1D 89.630 270 20 3 142 405 13971513 13971246 1.340000e-88 337.0
7 TraesCS1B01G388000 chr1D 95.364 151 7 0 1 151 13888775 13888625 1.080000e-59 241.0
8 TraesCS1B01G388000 chr1D 95.364 151 7 0 1 151 13972406 13972256 1.080000e-59 241.0
9 TraesCS1B01G388000 chr1D 95.364 151 7 0 1 151 14003699 14003549 1.080000e-59 241.0
10 TraesCS1B01G388000 chr1D 94.340 106 5 1 142 247 13887882 13887778 8.650000e-36 161.0
11 TraesCS1B01G388000 chr1D 90.476 63 5 1 353 415 33992216 33992277 6.930000e-12 82.4
12 TraesCS1B01G388000 chr1A 96.491 969 28 1 998 1966 547275657 547276619 0.000000e+00 1596.0
13 TraesCS1B01G388000 chr1A 84.967 306 13 16 578 876 547275310 547275589 2.290000e-71 279.0
14 TraesCS1B01G388000 chr3B 91.693 963 80 0 1001 1963 817353612 817352650 0.000000e+00 1336.0
15 TraesCS1B01G388000 chr3B 90.580 966 91 0 998 1963 821978386 821979351 0.000000e+00 1280.0
16 TraesCS1B01G388000 chr3B 90.412 970 85 4 1001 1963 821858260 821857292 0.000000e+00 1269.0
17 TraesCS1B01G388000 chr3B 96.373 579 19 2 2075 2651 708785090 708784512 0.000000e+00 952.0
18 TraesCS1B01G388000 chr3B 95.855 579 20 3 2075 2651 519944723 519945299 0.000000e+00 933.0
19 TraesCS1B01G388000 chr3A 91.116 968 84 2 998 1964 744085713 744084747 0.000000e+00 1310.0
20 TraesCS1B01G388000 chr3A 91.003 967 84 3 998 1963 744195472 744194508 0.000000e+00 1301.0
21 TraesCS1B01G388000 chr3A 90.900 967 86 2 998 1963 744216538 744215573 0.000000e+00 1297.0
22 TraesCS1B01G388000 chr3D 89.907 971 96 2 994 1963 610166175 610167144 0.000000e+00 1249.0
23 TraesCS1B01G388000 chr3D 94.545 55 2 1 353 406 22976432 22976378 1.930000e-12 84.2
24 TraesCS1B01G388000 chr3D 94.444 54 3 0 353 406 566967242 566967295 1.930000e-12 84.2
25 TraesCS1B01G388000 chr4B 96.522 575 19 1 2078 2651 447417597 447417023 0.000000e+00 950.0
26 TraesCS1B01G388000 chr4B 98.361 61 1 0 2954 3014 15508178 15508118 1.140000e-19 108.0
27 TraesCS1B01G388000 chr4B 98.361 61 1 0 2954 3014 17139896 17139956 1.140000e-19 108.0
28 TraesCS1B01G388000 chr4B 98.361 61 1 0 2954 3014 48842753 48842813 1.140000e-19 108.0
29 TraesCS1B01G388000 chr4B 98.361 61 1 0 2954 3014 251874750 251874690 1.140000e-19 108.0
30 TraesCS1B01G388000 chr4B 98.361 61 1 0 2954 3014 251881607 251881547 1.140000e-19 108.0
31 TraesCS1B01G388000 chr4B 98.361 61 1 0 2954 3014 394323604 394323664 1.140000e-19 108.0
32 TraesCS1B01G388000 chr4B 93.443 61 2 2 357 416 600519307 600519366 4.140000e-14 89.8
33 TraesCS1B01G388000 chr4B 94.340 53 3 0 353 405 16385379 16385431 6.930000e-12 82.4
34 TraesCS1B01G388000 chr6B 96.522 575 17 3 2078 2651 20303135 20303707 0.000000e+00 948.0
35 TraesCS1B01G388000 chr6B 96.341 574 20 1 2078 2651 706811946 706811374 0.000000e+00 942.0
36 TraesCS1B01G388000 chr6B 96.341 574 19 2 2078 2651 706818826 706818255 0.000000e+00 942.0
37 TraesCS1B01G388000 chr5A 96.360 577 20 1 2075 2651 424531068 424530493 0.000000e+00 948.0
38 TraesCS1B01G388000 chr5A 90.995 422 28 3 1 412 194741372 194740951 7.300000e-156 560.0
39 TraesCS1B01G388000 chr7B 96.174 575 20 2 2078 2651 92740050 92740623 0.000000e+00 939.0
40 TraesCS1B01G388000 chr7B 84.483 116 17 1 291 406 637610366 637610480 2.460000e-21 113.0
41 TraesCS1B01G388000 chr2A 96.014 577 22 1 2076 2651 404061202 404060626 0.000000e+00 937.0
42 TraesCS1B01G388000 chr5D 92.439 410 25 1 1 404 107148898 107149307 5.600000e-162 580.0
43 TraesCS1B01G388000 chr5B 92.822 404 23 1 1 404 631455608 631455211 5.600000e-162 580.0
44 TraesCS1B01G388000 chr5B 96.744 215 7 0 1 215 361420052 361419838 2.860000e-95 359.0
45 TraesCS1B01G388000 chr5B 92.118 203 16 0 211 413 361406090 361405888 1.370000e-73 287.0
46 TraesCS1B01G388000 chr6A 91.546 414 29 1 1 408 603241724 603241311 1.570000e-157 566.0
47 TraesCS1B01G388000 chr6A 98.148 54 0 1 353 405 91432686 91432739 3.200000e-15 93.5
48 TraesCS1B01G388000 chr4A 90.998 411 30 3 1 404 106900500 106900090 5.680000e-152 547.0
49 TraesCS1B01G388000 chrUn 98.361 61 1 0 2954 3014 305303483 305303543 1.140000e-19 108.0
50 TraesCS1B01G388000 chrUn 98.361 61 1 0 2954 3014 420804642 420804702 1.140000e-19 108.0
51 TraesCS1B01G388000 chrUn 100.000 48 0 0 357 404 37061746 37061699 4.140000e-14 89.8
52 TraesCS1B01G388000 chr6D 86.154 65 9 0 356 420 334231696 334231632 1.500000e-08 71.3
53 TraesCS1B01G388000 chr6D 97.059 34 1 0 355 388 448161735 448161768 1.170000e-04 58.4
54 TraesCS1B01G388000 chr4D 86.207 58 4 2 331 388 88093135 88093188 3.240000e-05 60.2
55 TraesCS1B01G388000 chr4D 92.500 40 3 0 349 388 107690302 107690341 1.170000e-04 58.4
56 TraesCS1B01G388000 chr4D 96.875 32 1 0 357 388 20120165 20120196 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G388000 chr1B 622179007 622182020 3013 True 2504.5 4896 100.000 1 3014 2 chr1B.!!$R2 3013
1 TraesCS1B01G388000 chr1D 452346302 452347618 1316 False 1901.0 1901 92.494 611 1963 1 chr1D.!!$F2 1352
2 TraesCS1B01G388000 chr1D 14002545 14003699 1154 True 294.5 348 92.867 1 405 2 chr1D.!!$R4 404
3 TraesCS1B01G388000 chr1D 13971246 13972406 1160 True 289.0 337 92.497 1 405 2 chr1D.!!$R3 404
4 TraesCS1B01G388000 chr1D 13887778 13888775 997 True 201.0 241 94.852 1 247 2 chr1D.!!$R2 246
5 TraesCS1B01G388000 chr1A 547275310 547276619 1309 False 937.5 1596 90.729 578 1966 2 chr1A.!!$F1 1388
6 TraesCS1B01G388000 chr3B 817352650 817353612 962 True 1336.0 1336 91.693 1001 1963 1 chr3B.!!$R2 962
7 TraesCS1B01G388000 chr3B 821978386 821979351 965 False 1280.0 1280 90.580 998 1963 1 chr3B.!!$F2 965
8 TraesCS1B01G388000 chr3B 821857292 821858260 968 True 1269.0 1269 90.412 1001 1963 1 chr3B.!!$R3 962
9 TraesCS1B01G388000 chr3B 708784512 708785090 578 True 952.0 952 96.373 2075 2651 1 chr3B.!!$R1 576
10 TraesCS1B01G388000 chr3B 519944723 519945299 576 False 933.0 933 95.855 2075 2651 1 chr3B.!!$F1 576
11 TraesCS1B01G388000 chr3A 744084747 744085713 966 True 1310.0 1310 91.116 998 1964 1 chr3A.!!$R1 966
12 TraesCS1B01G388000 chr3A 744194508 744195472 964 True 1301.0 1301 91.003 998 1963 1 chr3A.!!$R2 965
13 TraesCS1B01G388000 chr3A 744215573 744216538 965 True 1297.0 1297 90.900 998 1963 1 chr3A.!!$R3 965
14 TraesCS1B01G388000 chr3D 610166175 610167144 969 False 1249.0 1249 89.907 994 1963 1 chr3D.!!$F2 969
15 TraesCS1B01G388000 chr4B 447417023 447417597 574 True 950.0 950 96.522 2078 2651 1 chr4B.!!$R4 573
16 TraesCS1B01G388000 chr6B 20303135 20303707 572 False 948.0 948 96.522 2078 2651 1 chr6B.!!$F1 573
17 TraesCS1B01G388000 chr6B 706811374 706811946 572 True 942.0 942 96.341 2078 2651 1 chr6B.!!$R1 573
18 TraesCS1B01G388000 chr6B 706818255 706818826 571 True 942.0 942 96.341 2078 2651 1 chr6B.!!$R2 573
19 TraesCS1B01G388000 chr5A 424530493 424531068 575 True 948.0 948 96.360 2075 2651 1 chr5A.!!$R2 576
20 TraesCS1B01G388000 chr7B 92740050 92740623 573 False 939.0 939 96.174 2078 2651 1 chr7B.!!$F1 573
21 TraesCS1B01G388000 chr2A 404060626 404061202 576 True 937.0 937 96.014 2076 2651 1 chr2A.!!$R1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.032815 GGCGTGCTTCCTCCTCTATC 59.967 60.0 0.0 0.0 0.0 2.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2475 0.176219 ACGTTCCCGAACACTTCACA 59.824 50.0 8.23 0.0 41.2 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 0.535553 GAGGTCCGCGGAGATAGAGT 60.536 60.000 31.97 7.85 0.00 3.24
120 121 2.007608 GATGTAGCTTTTCCGTCCACC 58.992 52.381 0.00 0.00 0.00 4.61
133 134 0.675837 GTCCACCGGTTTTAGCTCCC 60.676 60.000 2.97 0.00 0.00 4.30
134 135 1.378119 CCACCGGTTTTAGCTCCCC 60.378 63.158 2.97 0.00 0.00 4.81
135 136 1.743995 CACCGGTTTTAGCTCCCCG 60.744 63.158 2.97 0.00 40.12 5.73
137 138 2.822701 CGGTTTTAGCTCCCCGGC 60.823 66.667 0.00 0.00 36.84 6.13
138 139 2.822701 GGTTTTAGCTCCCCGGCG 60.823 66.667 0.00 0.00 37.29 6.46
139 140 2.046604 GTTTTAGCTCCCCGGCGT 60.047 61.111 6.01 0.00 37.29 5.68
140 141 2.046700 TTTTAGCTCCCCGGCGTG 60.047 61.111 6.01 0.00 37.29 5.34
141 142 4.770874 TTTAGCTCCCCGGCGTGC 62.771 66.667 6.01 5.00 37.29 5.34
150 151 4.821589 CCGGCGTGCTTCCTCCTC 62.822 72.222 6.01 0.00 0.00 3.71
151 152 3.764466 CGGCGTGCTTCCTCCTCT 61.764 66.667 0.00 0.00 0.00 3.69
152 153 2.415608 CGGCGTGCTTCCTCCTCTA 61.416 63.158 0.00 0.00 0.00 2.43
153 154 1.739338 CGGCGTGCTTCCTCCTCTAT 61.739 60.000 0.00 0.00 0.00 1.98
154 155 0.032815 GGCGTGCTTCCTCCTCTATC 59.967 60.000 0.00 0.00 0.00 2.08
155 156 0.032815 GCGTGCTTCCTCCTCTATCC 59.967 60.000 0.00 0.00 0.00 2.59
156 157 0.676736 CGTGCTTCCTCCTCTATCCC 59.323 60.000 0.00 0.00 0.00 3.85
157 158 1.052617 GTGCTTCCTCCTCTATCCCC 58.947 60.000 0.00 0.00 0.00 4.81
158 159 0.470080 TGCTTCCTCCTCTATCCCCG 60.470 60.000 0.00 0.00 0.00 5.73
159 160 1.822114 GCTTCCTCCTCTATCCCCGC 61.822 65.000 0.00 0.00 0.00 6.13
160 161 1.152312 TTCCTCCTCTATCCCCGCC 60.152 63.158 0.00 0.00 0.00 6.13
161 162 2.992114 CCTCCTCTATCCCCGCCG 60.992 72.222 0.00 0.00 0.00 6.46
162 163 2.203509 CTCCTCTATCCCCGCCGT 60.204 66.667 0.00 0.00 0.00 5.68
163 164 2.520982 TCCTCTATCCCCGCCGTG 60.521 66.667 0.00 0.00 0.00 4.94
164 165 4.301027 CCTCTATCCCCGCCGTGC 62.301 72.222 0.00 0.00 0.00 5.34
165 166 4.301027 CTCTATCCCCGCCGTGCC 62.301 72.222 0.00 0.00 0.00 5.01
176 177 3.041940 CCGTGCCGTGTTGTCCTC 61.042 66.667 0.00 0.00 0.00 3.71
177 178 3.403057 CGTGCCGTGTTGTCCTCG 61.403 66.667 0.00 0.00 0.00 4.63
178 179 3.712881 GTGCCGTGTTGTCCTCGC 61.713 66.667 0.00 0.00 0.00 5.03
179 180 4.980805 TGCCGTGTTGTCCTCGCC 62.981 66.667 0.00 0.00 0.00 5.54
180 181 4.980805 GCCGTGTTGTCCTCGCCA 62.981 66.667 0.00 0.00 0.00 5.69
181 182 2.738521 CCGTGTTGTCCTCGCCAG 60.739 66.667 0.00 0.00 0.00 4.85
182 183 2.338620 CGTGTTGTCCTCGCCAGA 59.661 61.111 0.00 0.00 0.00 3.86
183 184 1.734477 CGTGTTGTCCTCGCCAGAG 60.734 63.158 0.00 0.00 43.98 3.35
196 197 4.785512 CAGAGAAGCCGCGACGCT 62.786 66.667 19.02 5.68 42.22 5.07
197 198 4.484258 AGAGAAGCCGCGACGCTC 62.484 66.667 19.02 9.10 38.44 5.03
216 217 3.003173 CCGGAGGCAGGACAAGGA 61.003 66.667 0.00 0.00 46.14 3.36
217 218 2.581354 CGGAGGCAGGACAAGGAG 59.419 66.667 0.00 0.00 0.00 3.69
218 219 1.984570 CGGAGGCAGGACAAGGAGA 60.985 63.158 0.00 0.00 0.00 3.71
219 220 1.904032 GGAGGCAGGACAAGGAGAG 59.096 63.158 0.00 0.00 0.00 3.20
220 221 0.616111 GGAGGCAGGACAAGGAGAGA 60.616 60.000 0.00 0.00 0.00 3.10
221 222 0.823460 GAGGCAGGACAAGGAGAGAG 59.177 60.000 0.00 0.00 0.00 3.20
222 223 0.617249 AGGCAGGACAAGGAGAGAGG 60.617 60.000 0.00 0.00 0.00 3.69
223 224 1.220477 GCAGGACAAGGAGAGAGGC 59.780 63.158 0.00 0.00 0.00 4.70
224 225 1.548357 GCAGGACAAGGAGAGAGGCA 61.548 60.000 0.00 0.00 0.00 4.75
225 226 0.536260 CAGGACAAGGAGAGAGGCAG 59.464 60.000 0.00 0.00 0.00 4.85
226 227 0.411452 AGGACAAGGAGAGAGGCAGA 59.589 55.000 0.00 0.00 0.00 4.26
227 228 0.823460 GGACAAGGAGAGAGGCAGAG 59.177 60.000 0.00 0.00 0.00 3.35
228 229 1.618345 GGACAAGGAGAGAGGCAGAGA 60.618 57.143 0.00 0.00 0.00 3.10
229 230 2.175202 GACAAGGAGAGAGGCAGAGAA 58.825 52.381 0.00 0.00 0.00 2.87
230 231 2.166254 GACAAGGAGAGAGGCAGAGAAG 59.834 54.545 0.00 0.00 0.00 2.85
231 232 2.178580 CAAGGAGAGAGGCAGAGAAGT 58.821 52.381 0.00 0.00 0.00 3.01
232 233 2.143876 AGGAGAGAGGCAGAGAAGTC 57.856 55.000 0.00 0.00 0.00 3.01
233 234 1.111277 GGAGAGAGGCAGAGAAGTCC 58.889 60.000 0.00 0.00 0.00 3.85
234 235 0.738389 GAGAGAGGCAGAGAAGTCCG 59.262 60.000 0.00 0.00 0.00 4.79
235 236 1.140804 GAGAGGCAGAGAAGTCCGC 59.859 63.158 0.00 0.00 0.00 5.54
236 237 2.202676 GAGGCAGAGAAGTCCGCG 60.203 66.667 0.00 0.00 0.00 6.46
237 238 3.708220 GAGGCAGAGAAGTCCGCGG 62.708 68.421 22.12 22.12 0.00 6.46
238 239 3.760035 GGCAGAGAAGTCCGCGGA 61.760 66.667 27.28 27.28 0.00 5.54
239 240 2.202676 GCAGAGAAGTCCGCGGAG 60.203 66.667 31.97 16.50 0.00 4.63
240 241 2.701780 GCAGAGAAGTCCGCGGAGA 61.702 63.158 31.97 4.83 0.00 3.71
241 242 2.010582 GCAGAGAAGTCCGCGGAGAT 62.011 60.000 31.97 21.09 0.00 2.75
242 243 0.248825 CAGAGAAGTCCGCGGAGATG 60.249 60.000 31.97 16.59 0.00 2.90
243 244 1.066587 GAGAAGTCCGCGGAGATGG 59.933 63.158 31.97 0.00 0.00 3.51
244 245 1.379977 AGAAGTCCGCGGAGATGGA 60.380 57.895 31.97 1.85 0.00 3.41
245 246 1.066587 GAAGTCCGCGGAGATGGAG 59.933 63.158 31.97 0.00 34.34 3.86
246 247 1.379977 AAGTCCGCGGAGATGGAGA 60.380 57.895 31.97 0.00 34.34 3.71
247 248 0.970937 AAGTCCGCGGAGATGGAGAA 60.971 55.000 31.97 0.00 34.34 2.87
248 249 1.066587 GTCCGCGGAGATGGAGAAG 59.933 63.158 31.97 0.00 34.34 2.85
249 250 1.076995 TCCGCGGAGATGGAGAAGA 60.077 57.895 27.28 0.00 0.00 2.87
250 251 1.103987 TCCGCGGAGATGGAGAAGAG 61.104 60.000 27.28 0.00 0.00 2.85
251 252 1.103987 CCGCGGAGATGGAGAAGAGA 61.104 60.000 24.07 0.00 0.00 3.10
252 253 0.741326 CGCGGAGATGGAGAAGAGAA 59.259 55.000 0.00 0.00 0.00 2.87
253 254 1.268999 CGCGGAGATGGAGAAGAGAAG 60.269 57.143 0.00 0.00 0.00 2.85
254 255 1.754226 GCGGAGATGGAGAAGAGAAGT 59.246 52.381 0.00 0.00 0.00 3.01
255 256 2.223711 GCGGAGATGGAGAAGAGAAGTC 60.224 54.545 0.00 0.00 0.00 3.01
256 257 2.360801 CGGAGATGGAGAAGAGAAGTCC 59.639 54.545 0.00 0.00 0.00 3.85
257 258 3.370104 GGAGATGGAGAAGAGAAGTCCA 58.630 50.000 0.00 0.00 44.48 4.02
258 259 3.384467 GGAGATGGAGAAGAGAAGTCCAG 59.616 52.174 0.00 0.00 43.61 3.86
259 260 4.277476 GAGATGGAGAAGAGAAGTCCAGA 58.723 47.826 0.00 0.00 43.61 3.86
260 261 4.280819 AGATGGAGAAGAGAAGTCCAGAG 58.719 47.826 0.00 0.00 43.61 3.35
261 262 3.816398 TGGAGAAGAGAAGTCCAGAGA 57.184 47.619 0.00 0.00 35.36 3.10
262 263 3.426615 TGGAGAAGAGAAGTCCAGAGAC 58.573 50.000 0.00 0.00 43.89 3.36
271 272 2.378028 GTCCAGAGACGAAGCATGC 58.622 57.895 10.51 10.51 32.18 4.06
273 274 2.699809 CAGAGACGAAGCATGCGC 59.300 61.111 13.01 0.00 45.20 6.09
274 275 2.882777 AGAGACGAAGCATGCGCG 60.883 61.111 26.72 26.72 45.20 6.86
275 276 3.918220 GAGACGAAGCATGCGCGG 61.918 66.667 29.82 18.39 45.20 6.46
276 277 4.435436 AGACGAAGCATGCGCGGA 62.435 61.111 29.82 5.00 45.20 5.54
277 278 3.264897 GACGAAGCATGCGCGGAT 61.265 61.111 29.82 7.52 45.20 4.18
278 279 3.497407 GACGAAGCATGCGCGGATG 62.497 63.158 32.97 32.97 45.20 3.51
279 280 3.264159 CGAAGCATGCGCGGATGA 61.264 61.111 39.61 0.00 45.49 2.92
280 281 2.630317 GAAGCATGCGCGGATGAG 59.370 61.111 39.61 18.53 45.49 2.90
281 282 1.884464 GAAGCATGCGCGGATGAGA 60.884 57.895 39.61 0.00 45.49 3.27
282 283 1.226686 GAAGCATGCGCGGATGAGAT 61.227 55.000 39.61 25.15 45.49 2.75
283 284 1.504647 AAGCATGCGCGGATGAGATG 61.505 55.000 39.61 18.80 45.49 2.90
284 285 2.249535 GCATGCGCGGATGAGATGT 61.250 57.895 39.61 2.75 0.00 3.06
285 286 1.568025 CATGCGCGGATGAGATGTG 59.432 57.895 33.72 7.83 0.00 3.21
286 287 1.144716 ATGCGCGGATGAGATGTGT 59.855 52.632 13.93 0.00 0.00 3.72
287 288 1.156034 ATGCGCGGATGAGATGTGTG 61.156 55.000 13.93 0.00 0.00 3.82
288 289 1.811266 GCGCGGATGAGATGTGTGT 60.811 57.895 8.83 0.00 0.00 3.72
289 290 2.001357 CGCGGATGAGATGTGTGTG 58.999 57.895 0.00 0.00 0.00 3.82
290 291 1.423721 CGCGGATGAGATGTGTGTGG 61.424 60.000 0.00 0.00 0.00 4.17
291 292 0.108186 GCGGATGAGATGTGTGTGGA 60.108 55.000 0.00 0.00 0.00 4.02
292 293 1.931906 CGGATGAGATGTGTGTGGAG 58.068 55.000 0.00 0.00 0.00 3.86
293 294 1.472201 CGGATGAGATGTGTGTGGAGG 60.472 57.143 0.00 0.00 0.00 4.30
294 295 1.833630 GGATGAGATGTGTGTGGAGGA 59.166 52.381 0.00 0.00 0.00 3.71
295 296 2.158986 GGATGAGATGTGTGTGGAGGAG 60.159 54.545 0.00 0.00 0.00 3.69
296 297 2.309136 TGAGATGTGTGTGGAGGAGA 57.691 50.000 0.00 0.00 0.00 3.71
297 298 2.174360 TGAGATGTGTGTGGAGGAGAG 58.826 52.381 0.00 0.00 0.00 3.20
298 299 2.175202 GAGATGTGTGTGGAGGAGAGT 58.825 52.381 0.00 0.00 0.00 3.24
299 300 3.245264 TGAGATGTGTGTGGAGGAGAGTA 60.245 47.826 0.00 0.00 0.00 2.59
300 301 3.957497 GAGATGTGTGTGGAGGAGAGTAT 59.043 47.826 0.00 0.00 0.00 2.12
301 302 5.130705 AGATGTGTGTGGAGGAGAGTATA 57.869 43.478 0.00 0.00 0.00 1.47
302 303 5.136828 AGATGTGTGTGGAGGAGAGTATAG 58.863 45.833 0.00 0.00 0.00 1.31
303 304 3.632333 TGTGTGTGGAGGAGAGTATAGG 58.368 50.000 0.00 0.00 0.00 2.57
304 305 2.959707 GTGTGTGGAGGAGAGTATAGGG 59.040 54.545 0.00 0.00 0.00 3.53
305 306 2.091278 TGTGTGGAGGAGAGTATAGGGG 60.091 54.545 0.00 0.00 0.00 4.79
306 307 2.177233 GTGTGGAGGAGAGTATAGGGGA 59.823 54.545 0.00 0.00 0.00 4.81
307 308 2.863238 TGTGGAGGAGAGTATAGGGGAA 59.137 50.000 0.00 0.00 0.00 3.97
308 309 3.273886 TGTGGAGGAGAGTATAGGGGAAA 59.726 47.826 0.00 0.00 0.00 3.13
309 310 3.898741 GTGGAGGAGAGTATAGGGGAAAG 59.101 52.174 0.00 0.00 0.00 2.62
310 311 3.797845 TGGAGGAGAGTATAGGGGAAAGA 59.202 47.826 0.00 0.00 0.00 2.52
311 312 4.154176 GGAGGAGAGTATAGGGGAAAGAC 58.846 52.174 0.00 0.00 0.00 3.01
312 313 3.822167 GAGGAGAGTATAGGGGAAAGACG 59.178 52.174 0.00 0.00 0.00 4.18
313 314 3.462579 AGGAGAGTATAGGGGAAAGACGA 59.537 47.826 0.00 0.00 0.00 4.20
314 315 4.079327 AGGAGAGTATAGGGGAAAGACGAA 60.079 45.833 0.00 0.00 0.00 3.85
315 316 4.833938 GGAGAGTATAGGGGAAAGACGAAT 59.166 45.833 0.00 0.00 0.00 3.34
316 317 5.279056 GGAGAGTATAGGGGAAAGACGAATG 60.279 48.000 0.00 0.00 0.00 2.67
317 318 4.039366 AGAGTATAGGGGAAAGACGAATGC 59.961 45.833 0.00 0.00 0.00 3.56
318 319 2.240493 ATAGGGGAAAGACGAATGCG 57.760 50.000 0.00 0.00 44.79 4.73
329 330 3.064324 GAATGCGTGCAGGCCCTT 61.064 61.111 27.10 19.99 0.00 3.95
330 331 3.346631 GAATGCGTGCAGGCCCTTG 62.347 63.158 27.10 0.00 0.00 3.61
331 332 4.666253 ATGCGTGCAGGCCCTTGT 62.666 61.111 27.10 6.71 0.00 3.16
334 335 2.906897 CGTGCAGGCCCTTGTGTT 60.907 61.111 0.00 0.00 0.00 3.32
335 336 2.730094 GTGCAGGCCCTTGTGTTG 59.270 61.111 0.00 0.00 0.00 3.33
336 337 3.225798 TGCAGGCCCTTGTGTTGC 61.226 61.111 0.00 0.41 35.42 4.17
337 338 4.347453 GCAGGCCCTTGTGTTGCG 62.347 66.667 0.00 0.00 0.00 4.85
338 339 2.906897 CAGGCCCTTGTGTTGCGT 60.907 61.111 0.00 0.00 0.00 5.24
339 340 2.906897 AGGCCCTTGTGTTGCGTG 60.907 61.111 0.00 0.00 0.00 5.34
340 341 3.977244 GGCCCTTGTGTTGCGTGG 61.977 66.667 0.00 0.00 0.00 4.94
341 342 4.645921 GCCCTTGTGTTGCGTGGC 62.646 66.667 0.00 0.00 0.00 5.01
342 343 4.326766 CCCTTGTGTTGCGTGGCG 62.327 66.667 0.00 0.00 0.00 5.69
343 344 3.582120 CCTTGTGTTGCGTGGCGT 61.582 61.111 0.00 0.00 0.00 5.68
344 345 2.052237 CTTGTGTTGCGTGGCGTC 60.052 61.111 0.00 0.00 0.00 5.19
345 346 3.521308 CTTGTGTTGCGTGGCGTCC 62.521 63.158 0.00 0.00 0.00 4.79
374 375 3.252484 CGACCGGCCGAATCGTTC 61.252 66.667 31.52 16.39 0.00 3.95
396 397 4.736631 GGCGCGCCGTTCTGAAAC 62.737 66.667 37.24 7.78 0.00 2.78
409 410 5.934935 GTTCTGAAACGTTTCCCTATTCA 57.065 39.130 32.14 15.79 36.36 2.57
410 411 6.496338 GTTCTGAAACGTTTCCCTATTCAT 57.504 37.500 32.14 0.00 36.36 2.57
411 412 6.909909 GTTCTGAAACGTTTCCCTATTCATT 58.090 36.000 32.14 0.00 36.36 2.57
412 413 8.036273 GTTCTGAAACGTTTCCCTATTCATTA 57.964 34.615 32.14 12.98 36.36 1.90
413 414 8.674607 GTTCTGAAACGTTTCCCTATTCATTAT 58.325 33.333 32.14 0.00 36.36 1.28
414 415 8.801882 TCTGAAACGTTTCCCTATTCATTATT 57.198 30.769 32.14 0.00 36.36 1.40
415 416 9.893634 TCTGAAACGTTTCCCTATTCATTATTA 57.106 29.630 32.14 11.96 36.36 0.98
417 418 9.675464 TGAAACGTTTCCCTATTCATTATTAGT 57.325 29.630 32.14 0.00 36.36 2.24
432 433 9.842775 TTCATTATTAGTAGAGTAGACCGAAGA 57.157 33.333 0.00 0.00 0.00 2.87
433 434 9.842775 TCATTATTAGTAGAGTAGACCGAAGAA 57.157 33.333 0.00 0.00 0.00 2.52
436 437 9.896645 TTATTAGTAGAGTAGACCGAAGAAGAA 57.103 33.333 0.00 0.00 0.00 2.52
437 438 8.983702 ATTAGTAGAGTAGACCGAAGAAGAAT 57.016 34.615 0.00 0.00 0.00 2.40
438 439 6.687081 AGTAGAGTAGACCGAAGAAGAATG 57.313 41.667 0.00 0.00 0.00 2.67
439 440 4.993029 AGAGTAGACCGAAGAAGAATGG 57.007 45.455 0.00 0.00 0.00 3.16
440 441 3.131400 AGAGTAGACCGAAGAAGAATGGC 59.869 47.826 0.00 0.00 0.00 4.40
441 442 2.168728 AGTAGACCGAAGAAGAATGGCC 59.831 50.000 0.00 0.00 0.00 5.36
442 443 1.280457 AGACCGAAGAAGAATGGCCT 58.720 50.000 3.32 0.00 0.00 5.19
443 444 1.208293 AGACCGAAGAAGAATGGCCTC 59.792 52.381 3.32 0.00 0.00 4.70
444 445 0.984230 ACCGAAGAAGAATGGCCTCA 59.016 50.000 3.32 0.00 0.00 3.86
445 446 1.339151 ACCGAAGAAGAATGGCCTCAC 60.339 52.381 3.32 0.00 0.00 3.51
446 447 1.065854 CCGAAGAAGAATGGCCTCACT 60.066 52.381 3.32 0.00 0.00 3.41
447 448 2.168521 CCGAAGAAGAATGGCCTCACTA 59.831 50.000 3.32 0.00 0.00 2.74
448 449 3.190874 CGAAGAAGAATGGCCTCACTAC 58.809 50.000 3.32 0.00 0.00 2.73
449 450 2.969628 AGAAGAATGGCCTCACTACG 57.030 50.000 3.32 0.00 0.00 3.51
450 451 1.482593 AGAAGAATGGCCTCACTACGG 59.517 52.381 3.32 0.00 0.00 4.02
451 452 0.541863 AAGAATGGCCTCACTACGGG 59.458 55.000 3.32 0.00 0.00 5.28
452 453 1.523938 GAATGGCCTCACTACGGGC 60.524 63.158 3.32 0.00 46.89 6.13
453 454 1.972660 GAATGGCCTCACTACGGGCT 61.973 60.000 3.32 0.00 46.80 5.19
454 455 1.562672 AATGGCCTCACTACGGGCTT 61.563 55.000 3.32 0.00 46.80 4.35
455 456 0.689745 ATGGCCTCACTACGGGCTTA 60.690 55.000 3.32 0.00 46.80 3.09
456 457 1.327690 TGGCCTCACTACGGGCTTAG 61.328 60.000 3.32 0.00 46.80 2.18
457 458 1.442148 GCCTCACTACGGGCTTAGG 59.558 63.158 0.00 0.00 44.48 2.69
458 459 1.328430 GCCTCACTACGGGCTTAGGT 61.328 60.000 0.00 0.00 44.48 3.08
459 460 1.192428 CCTCACTACGGGCTTAGGTT 58.808 55.000 0.00 0.00 0.00 3.50
460 461 1.136500 CCTCACTACGGGCTTAGGTTC 59.864 57.143 0.00 0.00 0.00 3.62
461 462 0.813184 TCACTACGGGCTTAGGTTCG 59.187 55.000 0.00 0.00 0.00 3.95
462 463 0.804933 CACTACGGGCTTAGGTTCGC 60.805 60.000 0.00 0.00 0.00 4.70
463 464 0.969409 ACTACGGGCTTAGGTTCGCT 60.969 55.000 0.00 0.00 0.00 4.93
464 465 0.527817 CTACGGGCTTAGGTTCGCTG 60.528 60.000 0.00 0.00 0.00 5.18
465 466 1.252904 TACGGGCTTAGGTTCGCTGT 61.253 55.000 0.00 0.00 0.00 4.40
466 467 2.100631 CGGGCTTAGGTTCGCTGTG 61.101 63.158 0.00 0.00 0.00 3.66
467 468 1.295423 GGGCTTAGGTTCGCTGTGA 59.705 57.895 0.00 0.00 0.00 3.58
468 469 0.741221 GGGCTTAGGTTCGCTGTGAG 60.741 60.000 0.00 0.00 0.00 3.51
469 470 0.741221 GGCTTAGGTTCGCTGTGAGG 60.741 60.000 0.00 0.00 0.00 3.86
470 471 1.362406 GCTTAGGTTCGCTGTGAGGC 61.362 60.000 0.00 0.00 0.00 4.70
471 472 0.247736 CTTAGGTTCGCTGTGAGGCT 59.752 55.000 0.00 0.00 0.00 4.58
472 473 0.037326 TTAGGTTCGCTGTGAGGCTG 60.037 55.000 0.00 0.00 0.00 4.85
473 474 1.888436 TAGGTTCGCTGTGAGGCTGG 61.888 60.000 0.00 0.00 0.00 4.85
474 475 2.743928 GTTCGCTGTGAGGCTGGG 60.744 66.667 0.00 0.00 0.00 4.45
475 476 4.704833 TTCGCTGTGAGGCTGGGC 62.705 66.667 0.00 0.00 0.00 5.36
479 480 4.007644 CTGTGAGGCTGGGCGTGA 62.008 66.667 0.00 0.00 0.00 4.35
480 481 3.320879 CTGTGAGGCTGGGCGTGAT 62.321 63.158 0.00 0.00 0.00 3.06
481 482 2.512515 GTGAGGCTGGGCGTGATC 60.513 66.667 0.00 0.00 0.00 2.92
482 483 3.002583 TGAGGCTGGGCGTGATCA 61.003 61.111 0.00 0.00 0.00 2.92
483 484 2.512515 GAGGCTGGGCGTGATCAC 60.513 66.667 16.21 16.21 0.00 3.06
484 485 4.101448 AGGCTGGGCGTGATCACC 62.101 66.667 20.03 12.32 0.00 4.02
485 486 4.408821 GGCTGGGCGTGATCACCA 62.409 66.667 20.03 11.49 0.00 4.17
486 487 3.127533 GCTGGGCGTGATCACCAC 61.128 66.667 20.03 13.96 42.30 4.16
487 488 2.347114 CTGGGCGTGATCACCACA 59.653 61.111 20.03 17.49 45.98 4.17
488 489 1.078214 CTGGGCGTGATCACCACAT 60.078 57.895 20.03 0.00 45.98 3.21
489 490 1.371337 CTGGGCGTGATCACCACATG 61.371 60.000 20.03 6.79 45.98 3.21
490 491 1.377202 GGGCGTGATCACCACATGT 60.377 57.895 20.03 0.00 45.98 3.21
491 492 0.960364 GGGCGTGATCACCACATGTT 60.960 55.000 20.03 0.00 45.98 2.71
492 493 0.447801 GGCGTGATCACCACATGTTC 59.552 55.000 20.03 0.00 45.98 3.18
493 494 1.155889 GCGTGATCACCACATGTTCA 58.844 50.000 20.03 0.00 45.98 3.18
494 495 1.739466 GCGTGATCACCACATGTTCAT 59.261 47.619 20.03 0.00 45.98 2.57
495 496 2.476686 GCGTGATCACCACATGTTCATG 60.477 50.000 20.03 10.92 45.98 3.07
496 497 2.743664 CGTGATCACCACATGTTCATGT 59.256 45.455 20.03 11.97 45.98 3.21
497 498 3.189080 CGTGATCACCACATGTTCATGTT 59.811 43.478 20.03 1.82 45.98 2.71
498 499 4.320421 CGTGATCACCACATGTTCATGTTT 60.320 41.667 20.03 3.86 45.98 2.83
499 500 5.531634 GTGATCACCACATGTTCATGTTTT 58.468 37.500 15.31 3.54 45.03 2.43
500 501 5.984926 GTGATCACCACATGTTCATGTTTTT 59.015 36.000 15.31 1.33 45.03 1.94
526 527 7.789273 ATGCAAATTTTGATTCTTGTGAACA 57.211 28.000 13.26 0.00 34.71 3.18
527 528 7.236674 TGCAAATTTTGATTCTTGTGAACAG 57.763 32.000 13.26 0.00 34.71 3.16
528 529 6.817641 TGCAAATTTTGATTCTTGTGAACAGT 59.182 30.769 13.26 0.00 34.71 3.55
529 530 7.978414 TGCAAATTTTGATTCTTGTGAACAGTA 59.022 29.630 13.26 0.00 34.71 2.74
530 531 8.981647 GCAAATTTTGATTCTTGTGAACAGTAT 58.018 29.630 13.26 0.00 34.71 2.12
546 547 4.452890 CAGTATGTACGGCAAATGTAGC 57.547 45.455 0.00 0.00 0.00 3.58
547 548 3.060540 CAGTATGTACGGCAAATGTAGCG 60.061 47.826 0.00 0.00 0.00 4.26
548 549 2.303163 ATGTACGGCAAATGTAGCGA 57.697 45.000 0.00 0.00 0.00 4.93
549 550 2.081725 TGTACGGCAAATGTAGCGAA 57.918 45.000 0.00 0.00 0.00 4.70
550 551 2.623535 TGTACGGCAAATGTAGCGAAT 58.376 42.857 0.00 0.00 0.00 3.34
551 552 3.004171 TGTACGGCAAATGTAGCGAATT 58.996 40.909 0.00 0.00 0.00 2.17
552 553 3.437395 TGTACGGCAAATGTAGCGAATTT 59.563 39.130 0.00 0.00 0.00 1.82
553 554 3.131240 ACGGCAAATGTAGCGAATTTC 57.869 42.857 0.00 0.00 0.00 2.17
554 555 2.747446 ACGGCAAATGTAGCGAATTTCT 59.253 40.909 0.00 0.00 0.00 2.52
555 556 3.181510 ACGGCAAATGTAGCGAATTTCTC 60.182 43.478 0.00 0.00 0.00 2.87
556 557 3.063997 CGGCAAATGTAGCGAATTTCTCT 59.936 43.478 0.00 0.00 0.00 3.10
557 558 4.270084 CGGCAAATGTAGCGAATTTCTCTA 59.730 41.667 0.00 0.00 0.00 2.43
558 559 5.557136 CGGCAAATGTAGCGAATTTCTCTAG 60.557 44.000 0.00 0.00 0.00 2.43
559 560 5.523916 GGCAAATGTAGCGAATTTCTCTAGA 59.476 40.000 0.00 0.00 0.00 2.43
560 561 6.037172 GGCAAATGTAGCGAATTTCTCTAGAA 59.963 38.462 0.00 0.00 0.00 2.10
561 562 7.254932 GGCAAATGTAGCGAATTTCTCTAGAAT 60.255 37.037 0.00 0.00 33.54 2.40
562 563 8.125448 GCAAATGTAGCGAATTTCTCTAGAATT 58.875 33.333 0.00 0.00 33.54 2.17
567 568 9.517609 TGTAGCGAATTTCTCTAGAATTACTTC 57.482 33.333 0.00 0.00 33.54 3.01
568 569 7.687005 AGCGAATTTCTCTAGAATTACTTCG 57.313 36.000 14.70 14.70 36.41 3.79
569 570 6.697892 AGCGAATTTCTCTAGAATTACTTCGG 59.302 38.462 18.03 7.26 35.33 4.30
570 571 6.696148 GCGAATTTCTCTAGAATTACTTCGGA 59.304 38.462 18.03 0.00 35.33 4.55
571 572 7.382759 GCGAATTTCTCTAGAATTACTTCGGAT 59.617 37.037 18.03 0.00 35.33 4.18
572 573 9.250624 CGAATTTCTCTAGAATTACTTCGGATT 57.749 33.333 12.62 2.05 36.45 3.01
576 577 8.943909 TTCTCTAGAATTACTTCGGATTTTCC 57.056 34.615 0.00 0.00 36.45 3.13
645 646 1.580942 CACCGGTCAGCAAACCATG 59.419 57.895 2.59 2.30 39.43 3.66
749 755 8.770010 ACTAGTAGTAGCTATTCAACAGGATT 57.230 34.615 0.00 0.00 0.00 3.01
750 756 9.863650 ACTAGTAGTAGCTATTCAACAGGATTA 57.136 33.333 0.00 0.00 0.00 1.75
782 791 5.424121 CTCCAACAAACAAACTGGAGTAG 57.576 43.478 8.51 0.00 46.64 2.57
783 792 4.850680 TCCAACAAACAAACTGGAGTAGT 58.149 39.130 0.00 0.00 42.89 2.73
784 793 5.991861 TCCAACAAACAAACTGGAGTAGTA 58.008 37.500 0.00 0.00 39.18 1.82
785 794 6.053005 TCCAACAAACAAACTGGAGTAGTAG 58.947 40.000 0.00 0.00 39.18 2.57
786 795 5.238650 CCAACAAACAAACTGGAGTAGTAGG 59.761 44.000 0.00 0.00 39.18 3.18
787 796 5.881923 ACAAACAAACTGGAGTAGTAGGA 57.118 39.130 0.00 0.00 39.18 2.94
788 797 5.855045 ACAAACAAACTGGAGTAGTAGGAG 58.145 41.667 0.00 0.00 39.18 3.69
789 798 5.365895 ACAAACAAACTGGAGTAGTAGGAGT 59.634 40.000 0.00 0.00 39.18 3.85
790 799 6.552350 ACAAACAAACTGGAGTAGTAGGAGTA 59.448 38.462 0.00 0.00 39.18 2.59
791 800 7.234988 ACAAACAAACTGGAGTAGTAGGAGTAT 59.765 37.037 0.00 0.00 39.18 2.12
819 829 8.840321 ACTTTTCCTAATCATCATTATCCAACG 58.160 33.333 0.00 0.00 0.00 4.10
823 833 4.997905 AATCATCATTATCCAACGAGCG 57.002 40.909 0.00 0.00 0.00 5.03
824 834 2.754472 TCATCATTATCCAACGAGCGG 58.246 47.619 0.00 0.00 0.00 5.52
855 869 1.407656 TATTCGCCCTTCCGCATCCT 61.408 55.000 0.00 0.00 0.00 3.24
873 887 2.521841 TCCTCCTCCTCCATCTCATTCT 59.478 50.000 0.00 0.00 0.00 2.40
874 888 2.899256 CCTCCTCCTCCATCTCATTCTC 59.101 54.545 0.00 0.00 0.00 2.87
875 889 3.574749 CTCCTCCTCCATCTCATTCTCA 58.425 50.000 0.00 0.00 0.00 3.27
876 890 4.161876 CTCCTCCTCCATCTCATTCTCAT 58.838 47.826 0.00 0.00 0.00 2.90
877 891 4.564799 TCCTCCTCCATCTCATTCTCATT 58.435 43.478 0.00 0.00 0.00 2.57
887 901 7.878644 TCCATCTCATTCTCATTCTCATTCATC 59.121 37.037 0.00 0.00 0.00 2.92
888 902 7.661847 CCATCTCATTCTCATTCTCATTCATCA 59.338 37.037 0.00 0.00 0.00 3.07
889 903 9.057089 CATCTCATTCTCATTCTCATTCATCAA 57.943 33.333 0.00 0.00 0.00 2.57
890 904 8.434733 TCTCATTCTCATTCTCATTCATCAAC 57.565 34.615 0.00 0.00 0.00 3.18
906 920 1.202604 TCAACCAACGTCCTCTCCAAC 60.203 52.381 0.00 0.00 0.00 3.77
907 921 1.129058 AACCAACGTCCTCTCCAACT 58.871 50.000 0.00 0.00 0.00 3.16
908 922 0.680061 ACCAACGTCCTCTCCAACTC 59.320 55.000 0.00 0.00 0.00 3.01
929 943 2.105993 CCAATCTCATCATCCTGCTCCA 59.894 50.000 0.00 0.00 0.00 3.86
933 947 2.842496 TCTCATCATCCTGCTCCAACTT 59.158 45.455 0.00 0.00 0.00 2.66
936 950 3.265221 TCATCATCCTGCTCCAACTTTCT 59.735 43.478 0.00 0.00 0.00 2.52
937 951 4.471025 TCATCATCCTGCTCCAACTTTCTA 59.529 41.667 0.00 0.00 0.00 2.10
938 952 4.478206 TCATCCTGCTCCAACTTTCTAG 57.522 45.455 0.00 0.00 0.00 2.43
939 953 2.770164 TCCTGCTCCAACTTTCTAGC 57.230 50.000 0.00 0.00 35.51 3.42
940 954 1.279271 TCCTGCTCCAACTTTCTAGCC 59.721 52.381 0.00 0.00 33.99 3.93
941 955 1.680249 CCTGCTCCAACTTTCTAGCCC 60.680 57.143 0.00 0.00 33.99 5.19
942 956 1.280421 CTGCTCCAACTTTCTAGCCCT 59.720 52.381 0.00 0.00 33.99 5.19
943 957 2.501723 CTGCTCCAACTTTCTAGCCCTA 59.498 50.000 0.00 0.00 33.99 3.53
944 958 2.501723 TGCTCCAACTTTCTAGCCCTAG 59.498 50.000 0.00 0.00 33.99 3.02
960 977 1.262683 CCTAGCTACCTACGTACGCAC 59.737 57.143 16.72 0.00 0.00 5.34
969 986 4.753131 CGTACGCACGCACGCAAG 62.753 66.667 0.52 0.00 42.05 4.01
1399 1425 2.450502 ACACCTCCAAGGGCCACT 60.451 61.111 6.18 0.00 40.58 4.00
1966 2371 4.340097 TCACCACTCCCAAGTACGTATATG 59.660 45.833 0.00 0.87 33.25 1.78
1968 2373 3.069016 CCACTCCCAAGTACGTATATGCA 59.931 47.826 0.00 0.00 33.25 3.96
1969 2374 4.262463 CCACTCCCAAGTACGTATATGCAT 60.262 45.833 3.79 3.79 33.25 3.96
1970 2375 4.686091 CACTCCCAAGTACGTATATGCATG 59.314 45.833 10.16 0.00 33.25 4.06
1971 2376 3.659786 TCCCAAGTACGTATATGCATGC 58.340 45.455 11.82 11.82 0.00 4.06
1972 2377 2.742053 CCCAAGTACGTATATGCATGCC 59.258 50.000 16.68 0.00 0.00 4.40
1975 2380 3.744238 AGTACGTATATGCATGCCACA 57.256 42.857 16.68 0.00 0.00 4.17
1978 2383 2.483876 ACGTATATGCATGCCACACTC 58.516 47.619 16.68 0.62 0.00 3.51
1979 2384 2.103094 ACGTATATGCATGCCACACTCT 59.897 45.455 16.68 0.00 0.00 3.24
1982 2387 4.319046 CGTATATGCATGCCACACTCTTTC 60.319 45.833 16.68 0.00 0.00 2.62
1983 2388 2.211250 ATGCATGCCACACTCTTTCT 57.789 45.000 16.68 0.00 0.00 2.52
1984 2389 1.985473 TGCATGCCACACTCTTTCTT 58.015 45.000 16.68 0.00 0.00 2.52
1985 2390 1.881973 TGCATGCCACACTCTTTCTTC 59.118 47.619 16.68 0.00 0.00 2.87
1986 2391 1.135859 GCATGCCACACTCTTTCTTCG 60.136 52.381 6.36 0.00 0.00 3.79
1987 2392 1.466167 CATGCCACACTCTTTCTTCGG 59.534 52.381 0.00 0.00 0.00 4.30
1988 2393 0.468226 TGCCACACTCTTTCTTCGGT 59.532 50.000 0.00 0.00 0.00 4.69
1989 2394 1.689813 TGCCACACTCTTTCTTCGGTA 59.310 47.619 0.00 0.00 0.00 4.02
1990 2395 2.301870 TGCCACACTCTTTCTTCGGTAT 59.698 45.455 0.00 0.00 0.00 2.73
1991 2396 3.512329 TGCCACACTCTTTCTTCGGTATA 59.488 43.478 0.00 0.00 0.00 1.47
1992 2397 3.864003 GCCACACTCTTTCTTCGGTATAC 59.136 47.826 0.00 0.00 0.00 1.47
1993 2398 4.381718 GCCACACTCTTTCTTCGGTATACT 60.382 45.833 2.25 0.00 0.00 2.12
1994 2399 5.341617 CCACACTCTTTCTTCGGTATACTC 58.658 45.833 2.25 0.00 0.00 2.59
1995 2400 5.125739 CCACACTCTTTCTTCGGTATACTCT 59.874 44.000 2.25 0.00 0.00 3.24
1996 2401 6.030849 CACACTCTTTCTTCGGTATACTCTG 58.969 44.000 2.25 0.00 0.00 3.35
1997 2402 5.711036 ACACTCTTTCTTCGGTATACTCTGT 59.289 40.000 2.25 0.00 0.00 3.41
1998 2403 6.883217 ACACTCTTTCTTCGGTATACTCTGTA 59.117 38.462 2.25 0.00 0.00 2.74
1999 2404 7.556996 ACACTCTTTCTTCGGTATACTCTGTAT 59.443 37.037 2.25 0.00 0.00 2.29
2000 2405 8.407064 CACTCTTTCTTCGGTATACTCTGTATT 58.593 37.037 2.25 0.00 0.00 1.89
2001 2406 8.968969 ACTCTTTCTTCGGTATACTCTGTATTT 58.031 33.333 2.25 0.00 0.00 1.40
2002 2407 9.239002 CTCTTTCTTCGGTATACTCTGTATTTG 57.761 37.037 2.25 0.00 0.00 2.32
2003 2408 7.705325 TCTTTCTTCGGTATACTCTGTATTTGC 59.295 37.037 2.25 0.00 0.00 3.68
2004 2409 6.710597 TCTTCGGTATACTCTGTATTTGCT 57.289 37.500 2.25 0.00 0.00 3.91
2005 2410 7.812690 TCTTCGGTATACTCTGTATTTGCTA 57.187 36.000 2.25 0.00 0.00 3.49
2006 2411 7.646314 TCTTCGGTATACTCTGTATTTGCTAC 58.354 38.462 2.25 0.00 0.00 3.58
2007 2412 5.993891 TCGGTATACTCTGTATTTGCTACG 58.006 41.667 2.25 0.00 32.61 3.51
2008 2413 4.615961 CGGTATACTCTGTATTTGCTACGC 59.384 45.833 2.25 0.00 32.61 4.42
2009 2414 4.922103 GGTATACTCTGTATTTGCTACGCC 59.078 45.833 2.25 0.00 32.61 5.68
2010 2415 2.311124 ACTCTGTATTTGCTACGCCC 57.689 50.000 0.00 0.00 32.61 6.13
2011 2416 1.831736 ACTCTGTATTTGCTACGCCCT 59.168 47.619 0.00 0.00 32.61 5.19
2012 2417 3.028850 ACTCTGTATTTGCTACGCCCTA 58.971 45.455 0.00 0.00 32.61 3.53
2013 2418 3.068307 ACTCTGTATTTGCTACGCCCTAG 59.932 47.826 0.00 0.00 32.61 3.02
2014 2419 3.293337 TCTGTATTTGCTACGCCCTAGA 58.707 45.455 0.00 0.00 32.61 2.43
2015 2420 3.318275 TCTGTATTTGCTACGCCCTAGAG 59.682 47.826 0.00 0.00 32.61 2.43
2016 2421 2.223971 TGTATTTGCTACGCCCTAGAGC 60.224 50.000 0.00 0.00 36.72 4.09
2017 2422 1.123928 ATTTGCTACGCCCTAGAGCT 58.876 50.000 0.00 0.00 37.12 4.09
2018 2423 0.460311 TTTGCTACGCCCTAGAGCTC 59.540 55.000 5.27 5.27 37.12 4.09
2019 2424 0.395862 TTGCTACGCCCTAGAGCTCT 60.396 55.000 22.17 22.17 37.12 4.09
2020 2425 1.103987 TGCTACGCCCTAGAGCTCTG 61.104 60.000 26.78 15.29 37.12 3.35
2021 2426 1.801309 GCTACGCCCTAGAGCTCTGG 61.801 65.000 26.78 23.10 33.28 3.86
2022 2427 0.179015 CTACGCCCTAGAGCTCTGGA 60.179 60.000 27.18 7.37 0.00 3.86
2023 2428 0.257905 TACGCCCTAGAGCTCTGGAA 59.742 55.000 27.18 6.59 0.00 3.53
2024 2429 1.040339 ACGCCCTAGAGCTCTGGAAG 61.040 60.000 27.18 18.39 0.00 3.46
2032 2437 4.292784 GCTCTGGAAGCCTGACAC 57.707 61.111 0.00 0.00 45.92 3.67
2033 2438 1.739562 GCTCTGGAAGCCTGACACG 60.740 63.158 0.00 0.00 45.92 4.49
2034 2439 1.668294 CTCTGGAAGCCTGACACGT 59.332 57.895 0.00 0.00 0.00 4.49
2035 2440 0.389166 CTCTGGAAGCCTGACACGTC 60.389 60.000 0.00 0.00 0.00 4.34
2036 2441 1.112916 TCTGGAAGCCTGACACGTCA 61.113 55.000 0.00 0.00 38.06 4.35
2044 2449 2.029518 TGACACGTCAGGCTGCTG 59.970 61.111 10.34 6.96 34.14 4.41
2045 2450 3.418068 GACACGTCAGGCTGCTGC 61.418 66.667 10.34 7.10 38.76 5.25
2046 2451 3.873026 GACACGTCAGGCTGCTGCT 62.873 63.158 15.64 0.00 39.59 4.24
2047 2452 3.117171 CACGTCAGGCTGCTGCTC 61.117 66.667 15.64 5.79 39.59 4.26
2048 2453 4.731612 ACGTCAGGCTGCTGCTCG 62.732 66.667 15.64 15.70 39.59 5.03
2071 2476 3.129502 CTGCTGATGGCCGGTGTG 61.130 66.667 1.90 0.00 40.92 3.82
2072 2477 3.907260 CTGCTGATGGCCGGTGTGT 62.907 63.158 1.90 0.00 40.92 3.72
2073 2478 3.434319 GCTGATGGCCGGTGTGTG 61.434 66.667 1.90 0.00 34.27 3.82
2074 2479 2.347114 CTGATGGCCGGTGTGTGA 59.653 61.111 1.90 0.00 0.00 3.58
2075 2480 1.302431 CTGATGGCCGGTGTGTGAA 60.302 57.895 1.90 0.00 0.00 3.18
2076 2481 1.300971 CTGATGGCCGGTGTGTGAAG 61.301 60.000 1.90 0.00 0.00 3.02
2081 2486 1.647084 GCCGGTGTGTGAAGTGTTC 59.353 57.895 1.90 0.00 0.00 3.18
2167 2574 3.634910 GAGAGGGGAGAGTGTTGTCTATC 59.365 52.174 0.00 0.00 0.00 2.08
2210 2617 3.036026 CGCTGACGCAACATAGAGT 57.964 52.632 0.00 0.00 35.30 3.24
2212 2619 2.112522 CGCTGACGCAACATAGAGTAG 58.887 52.381 0.00 0.00 35.30 2.57
2302 2709 1.135489 ACGTACAACTCGATGACGCAT 60.135 47.619 9.41 0.00 37.02 4.73
2417 2824 4.377021 CCTAAGCACCGCTACAATATGAA 58.623 43.478 0.00 0.00 38.25 2.57
2539 2949 4.423209 GTGGAGGAGGGGAGGGCT 62.423 72.222 0.00 0.00 0.00 5.19
2970 3522 4.490266 AGCCCCTCTCTCTTTCCC 57.510 61.111 0.00 0.00 0.00 3.97
2971 3523 1.687493 AGCCCCTCTCTCTTTCCCG 60.687 63.158 0.00 0.00 0.00 5.14
2972 3524 1.990614 GCCCCTCTCTCTTTCCCGT 60.991 63.158 0.00 0.00 0.00 5.28
2973 3525 0.686769 GCCCCTCTCTCTTTCCCGTA 60.687 60.000 0.00 0.00 0.00 4.02
2974 3526 2.035331 GCCCCTCTCTCTTTCCCGTAT 61.035 57.143 0.00 0.00 0.00 3.06
2975 3527 1.689273 CCCCTCTCTCTTTCCCGTATG 59.311 57.143 0.00 0.00 0.00 2.39
2976 3528 1.689273 CCCTCTCTCTTTCCCGTATGG 59.311 57.143 0.00 0.00 0.00 2.74
2977 3529 1.069358 CCTCTCTCTTTCCCGTATGGC 59.931 57.143 0.00 0.00 0.00 4.40
2978 3530 1.069358 CTCTCTCTTTCCCGTATGGCC 59.931 57.143 0.00 0.00 0.00 5.36
2979 3531 0.106894 CTCTCTTTCCCGTATGGCCC 59.893 60.000 0.00 0.00 0.00 5.80
2980 3532 0.619255 TCTCTTTCCCGTATGGCCCA 60.619 55.000 0.00 0.00 0.00 5.36
2981 3533 0.254747 CTCTTTCCCGTATGGCCCAA 59.745 55.000 0.00 0.00 0.00 4.12
2982 3534 0.923358 TCTTTCCCGTATGGCCCAAT 59.077 50.000 0.00 0.00 0.00 3.16
2983 3535 2.105821 CTCTTTCCCGTATGGCCCAATA 59.894 50.000 0.00 0.00 0.00 1.90
2984 3536 2.510382 TCTTTCCCGTATGGCCCAATAA 59.490 45.455 0.00 0.00 0.00 1.40
2985 3537 2.649531 TTCCCGTATGGCCCAATAAG 57.350 50.000 0.00 0.00 0.00 1.73
2986 3538 0.768622 TCCCGTATGGCCCAATAAGG 59.231 55.000 0.00 4.06 33.05 2.69
2998 3550 4.184649 CCCAATAAGGCCCAATACTTCT 57.815 45.455 0.00 0.00 35.39 2.85
2999 3551 4.145052 CCCAATAAGGCCCAATACTTCTC 58.855 47.826 0.00 0.00 35.39 2.87
3000 3552 4.145052 CCAATAAGGCCCAATACTTCTCC 58.855 47.826 0.00 0.00 0.00 3.71
3001 3553 4.145052 CAATAAGGCCCAATACTTCTCCC 58.855 47.826 0.00 0.00 0.00 4.30
3002 3554 0.927029 AAGGCCCAATACTTCTCCCC 59.073 55.000 0.00 0.00 0.00 4.81
3003 3555 0.994050 AGGCCCAATACTTCTCCCCC 60.994 60.000 0.00 0.00 0.00 5.40
3004 3556 1.148498 GCCCAATACTTCTCCCCCG 59.852 63.158 0.00 0.00 0.00 5.73
3005 3557 1.632965 GCCCAATACTTCTCCCCCGT 61.633 60.000 0.00 0.00 0.00 5.28
3006 3558 1.797320 CCCAATACTTCTCCCCCGTA 58.203 55.000 0.00 0.00 0.00 4.02
3007 3559 2.335933 CCCAATACTTCTCCCCCGTAT 58.664 52.381 0.00 0.00 0.00 3.06
3008 3560 2.709397 CCCAATACTTCTCCCCCGTATT 59.291 50.000 0.00 0.00 35.00 1.89
3009 3561 3.496160 CCCAATACTTCTCCCCCGTATTG 60.496 52.174 12.15 12.15 44.87 1.90
3010 3562 3.139077 CAATACTTCTCCCCCGTATTGC 58.861 50.000 8.02 0.00 41.69 3.56
3011 3563 1.125633 TACTTCTCCCCCGTATTGCC 58.874 55.000 0.00 0.00 0.00 4.52
3012 3564 1.227556 CTTCTCCCCCGTATTGCCG 60.228 63.158 0.00 0.00 0.00 5.69
3013 3565 1.968050 CTTCTCCCCCGTATTGCCGT 61.968 60.000 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.107214 CTCTGCCTCTCTCCTCGTCT 60.107 60.000 0.00 0.00 0.00 4.18
66 67 0.253044 CTGCAATTTCTCTCCCCCGA 59.747 55.000 0.00 0.00 0.00 5.14
120 121 2.822701 GCCGGGGAGCTAAAACCG 60.823 66.667 2.18 9.99 45.57 4.44
133 134 4.821589 GAGGAGGAAGCACGCCGG 62.822 72.222 0.00 0.00 0.00 6.13
134 135 1.739338 ATAGAGGAGGAAGCACGCCG 61.739 60.000 0.00 0.00 0.00 6.46
135 136 0.032815 GATAGAGGAGGAAGCACGCC 59.967 60.000 0.00 0.00 0.00 5.68
136 137 0.032815 GGATAGAGGAGGAAGCACGC 59.967 60.000 0.00 0.00 0.00 5.34
137 138 0.676736 GGGATAGAGGAGGAAGCACG 59.323 60.000 0.00 0.00 0.00 5.34
138 139 1.052617 GGGGATAGAGGAGGAAGCAC 58.947 60.000 0.00 0.00 0.00 4.40
139 140 0.470080 CGGGGATAGAGGAGGAAGCA 60.470 60.000 0.00 0.00 0.00 3.91
140 141 1.822114 GCGGGGATAGAGGAGGAAGC 61.822 65.000 0.00 0.00 0.00 3.86
141 142 1.188871 GGCGGGGATAGAGGAGGAAG 61.189 65.000 0.00 0.00 0.00 3.46
142 143 1.152312 GGCGGGGATAGAGGAGGAA 60.152 63.158 0.00 0.00 0.00 3.36
143 144 2.526628 GGCGGGGATAGAGGAGGA 59.473 66.667 0.00 0.00 0.00 3.71
144 145 2.992114 CGGCGGGGATAGAGGAGG 60.992 72.222 0.00 0.00 0.00 4.30
145 146 2.203509 ACGGCGGGGATAGAGGAG 60.204 66.667 13.24 0.00 0.00 3.69
146 147 2.520982 CACGGCGGGGATAGAGGA 60.521 66.667 13.24 0.00 0.00 3.71
147 148 4.301027 GCACGGCGGGGATAGAGG 62.301 72.222 12.74 0.00 0.00 3.69
148 149 4.301027 GGCACGGCGGGGATAGAG 62.301 72.222 12.74 0.00 0.00 2.43
161 162 3.712881 GCGAGGACAACACGGCAC 61.713 66.667 0.00 0.00 0.00 5.01
164 165 2.738521 CTGGCGAGGACAACACGG 60.739 66.667 0.00 0.00 0.00 4.94
165 166 1.734477 CTCTGGCGAGGACAACACG 60.734 63.158 0.00 0.00 33.51 4.49
166 167 0.033504 TTCTCTGGCGAGGACAACAC 59.966 55.000 0.00 0.00 37.86 3.32
167 168 0.318441 CTTCTCTGGCGAGGACAACA 59.682 55.000 0.00 0.00 37.86 3.33
168 169 1.016653 GCTTCTCTGGCGAGGACAAC 61.017 60.000 0.00 0.00 37.86 3.32
169 170 1.293498 GCTTCTCTGGCGAGGACAA 59.707 57.895 0.00 0.00 37.86 3.18
170 171 2.650116 GGCTTCTCTGGCGAGGACA 61.650 63.158 0.00 0.00 37.86 4.02
171 172 2.185608 GGCTTCTCTGGCGAGGAC 59.814 66.667 0.00 0.00 37.86 3.85
179 180 4.785512 AGCGTCGCGGCTTCTCTG 62.786 66.667 9.90 0.00 41.39 3.35
180 181 4.484258 GAGCGTCGCGGCTTCTCT 62.484 66.667 18.44 6.92 44.93 3.10
199 200 3.003173 TCCTTGTCCTGCCTCCGG 61.003 66.667 0.00 0.00 0.00 5.14
200 201 1.954362 CTCTCCTTGTCCTGCCTCCG 61.954 65.000 0.00 0.00 0.00 4.63
201 202 0.616111 TCTCTCCTTGTCCTGCCTCC 60.616 60.000 0.00 0.00 0.00 4.30
202 203 0.823460 CTCTCTCCTTGTCCTGCCTC 59.177 60.000 0.00 0.00 0.00 4.70
203 204 0.617249 CCTCTCTCCTTGTCCTGCCT 60.617 60.000 0.00 0.00 0.00 4.75
204 205 1.904032 CCTCTCTCCTTGTCCTGCC 59.096 63.158 0.00 0.00 0.00 4.85
205 206 1.220477 GCCTCTCTCCTTGTCCTGC 59.780 63.158 0.00 0.00 0.00 4.85
206 207 0.536260 CTGCCTCTCTCCTTGTCCTG 59.464 60.000 0.00 0.00 0.00 3.86
207 208 0.411452 TCTGCCTCTCTCCTTGTCCT 59.589 55.000 0.00 0.00 0.00 3.85
208 209 0.823460 CTCTGCCTCTCTCCTTGTCC 59.177 60.000 0.00 0.00 0.00 4.02
209 210 1.846007 TCTCTGCCTCTCTCCTTGTC 58.154 55.000 0.00 0.00 0.00 3.18
210 211 2.178580 CTTCTCTGCCTCTCTCCTTGT 58.821 52.381 0.00 0.00 0.00 3.16
211 212 2.166254 GACTTCTCTGCCTCTCTCCTTG 59.834 54.545 0.00 0.00 0.00 3.61
212 213 2.456577 GACTTCTCTGCCTCTCTCCTT 58.543 52.381 0.00 0.00 0.00 3.36
213 214 1.341976 GGACTTCTCTGCCTCTCTCCT 60.342 57.143 0.00 0.00 0.00 3.69
214 215 1.111277 GGACTTCTCTGCCTCTCTCC 58.889 60.000 0.00 0.00 0.00 3.71
215 216 0.738389 CGGACTTCTCTGCCTCTCTC 59.262 60.000 0.00 0.00 0.00 3.20
216 217 1.319614 GCGGACTTCTCTGCCTCTCT 61.320 60.000 0.00 0.00 42.36 3.10
217 218 1.140804 GCGGACTTCTCTGCCTCTC 59.859 63.158 0.00 0.00 42.36 3.20
218 219 2.705821 CGCGGACTTCTCTGCCTCT 61.706 63.158 0.00 0.00 45.01 3.69
219 220 2.202676 CGCGGACTTCTCTGCCTC 60.203 66.667 0.00 0.00 45.01 4.70
220 221 3.764466 CCGCGGACTTCTCTGCCT 61.764 66.667 24.07 0.00 45.01 4.75
221 222 3.708220 CTCCGCGGACTTCTCTGCC 62.708 68.421 27.28 0.00 45.01 4.85
222 223 2.010582 ATCTCCGCGGACTTCTCTGC 62.011 60.000 27.28 0.00 44.44 4.26
223 224 0.248825 CATCTCCGCGGACTTCTCTG 60.249 60.000 27.28 13.34 0.00 3.35
224 225 1.388065 CCATCTCCGCGGACTTCTCT 61.388 60.000 27.28 1.87 0.00 3.10
225 226 1.066587 CCATCTCCGCGGACTTCTC 59.933 63.158 27.28 0.00 0.00 2.87
226 227 1.379977 TCCATCTCCGCGGACTTCT 60.380 57.895 27.28 5.92 0.00 2.85
227 228 1.066587 CTCCATCTCCGCGGACTTC 59.933 63.158 27.28 0.00 0.00 3.01
228 229 0.970937 TTCTCCATCTCCGCGGACTT 60.971 55.000 27.28 11.98 0.00 3.01
229 230 1.379977 TTCTCCATCTCCGCGGACT 60.380 57.895 27.28 12.21 0.00 3.85
230 231 1.066587 CTTCTCCATCTCCGCGGAC 59.933 63.158 27.28 0.00 0.00 4.79
231 232 1.076995 TCTTCTCCATCTCCGCGGA 60.077 57.895 29.03 29.03 0.00 5.54
232 233 1.103987 TCTCTTCTCCATCTCCGCGG 61.104 60.000 22.12 22.12 0.00 6.46
233 234 0.741326 TTCTCTTCTCCATCTCCGCG 59.259 55.000 0.00 0.00 0.00 6.46
234 235 1.754226 ACTTCTCTTCTCCATCTCCGC 59.246 52.381 0.00 0.00 0.00 5.54
235 236 2.360801 GGACTTCTCTTCTCCATCTCCG 59.639 54.545 0.00 0.00 0.00 4.63
236 237 3.370104 TGGACTTCTCTTCTCCATCTCC 58.630 50.000 0.00 0.00 0.00 3.71
237 238 4.277476 TCTGGACTTCTCTTCTCCATCTC 58.723 47.826 0.00 0.00 33.51 2.75
238 239 4.017591 TCTCTGGACTTCTCTTCTCCATCT 60.018 45.833 0.00 0.00 33.51 2.90
239 240 4.097892 GTCTCTGGACTTCTCTTCTCCATC 59.902 50.000 0.00 0.00 39.24 3.51
240 241 4.023291 GTCTCTGGACTTCTCTTCTCCAT 58.977 47.826 0.00 0.00 39.24 3.41
241 242 3.426615 GTCTCTGGACTTCTCTTCTCCA 58.573 50.000 0.00 0.00 39.24 3.86
242 243 2.422127 CGTCTCTGGACTTCTCTTCTCC 59.578 54.545 0.00 0.00 40.10 3.71
243 244 3.340034 TCGTCTCTGGACTTCTCTTCTC 58.660 50.000 0.00 0.00 40.10 2.87
244 245 3.426787 TCGTCTCTGGACTTCTCTTCT 57.573 47.619 0.00 0.00 40.10 2.85
245 246 3.672241 GCTTCGTCTCTGGACTTCTCTTC 60.672 52.174 0.00 0.00 40.10 2.87
246 247 2.230266 GCTTCGTCTCTGGACTTCTCTT 59.770 50.000 0.00 0.00 40.10 2.85
247 248 1.816224 GCTTCGTCTCTGGACTTCTCT 59.184 52.381 0.00 0.00 40.10 3.10
248 249 1.542030 TGCTTCGTCTCTGGACTTCTC 59.458 52.381 0.00 0.00 40.10 2.87
249 250 1.621992 TGCTTCGTCTCTGGACTTCT 58.378 50.000 0.00 0.00 40.10 2.85
250 251 2.266554 CATGCTTCGTCTCTGGACTTC 58.733 52.381 0.00 0.00 40.10 3.01
251 252 1.674221 GCATGCTTCGTCTCTGGACTT 60.674 52.381 11.37 0.00 40.10 3.01
252 253 0.108424 GCATGCTTCGTCTCTGGACT 60.108 55.000 11.37 0.00 40.10 3.85
253 254 1.416813 CGCATGCTTCGTCTCTGGAC 61.417 60.000 17.13 0.00 38.97 4.02
254 255 1.153765 CGCATGCTTCGTCTCTGGA 60.154 57.895 17.13 0.00 0.00 3.86
255 256 2.806856 GCGCATGCTTCGTCTCTGG 61.807 63.158 17.13 0.00 38.39 3.86
256 257 2.699809 GCGCATGCTTCGTCTCTG 59.300 61.111 17.13 0.00 38.39 3.35
257 258 2.882777 CGCGCATGCTTCGTCTCT 60.883 61.111 17.13 0.00 39.65 3.10
258 259 3.918220 CCGCGCATGCTTCGTCTC 61.918 66.667 17.13 0.00 39.65 3.36
259 260 3.723235 ATCCGCGCATGCTTCGTCT 62.723 57.895 17.13 5.67 39.65 4.18
260 261 3.264897 ATCCGCGCATGCTTCGTC 61.265 61.111 17.13 0.00 39.65 4.20
261 262 3.566853 CATCCGCGCATGCTTCGT 61.567 61.111 17.13 1.55 39.65 3.85
262 263 3.219513 CTCATCCGCGCATGCTTCG 62.220 63.158 17.13 17.88 39.65 3.79
263 264 1.226686 ATCTCATCCGCGCATGCTTC 61.227 55.000 17.13 6.44 39.65 3.86
264 265 1.227764 ATCTCATCCGCGCATGCTT 60.228 52.632 17.13 0.00 39.65 3.91
265 266 1.959738 CATCTCATCCGCGCATGCT 60.960 57.895 17.13 0.00 39.65 3.79
266 267 2.249535 ACATCTCATCCGCGCATGC 61.250 57.895 4.78 7.91 37.91 4.06
267 268 1.156034 ACACATCTCATCCGCGCATG 61.156 55.000 8.75 2.86 0.00 4.06
268 269 1.144716 ACACATCTCATCCGCGCAT 59.855 52.632 8.75 0.00 0.00 4.73
269 270 1.810853 CACACATCTCATCCGCGCA 60.811 57.895 8.75 0.00 0.00 6.09
270 271 1.811266 ACACACATCTCATCCGCGC 60.811 57.895 0.00 0.00 0.00 6.86
271 272 1.423721 CCACACACATCTCATCCGCG 61.424 60.000 0.00 0.00 0.00 6.46
272 273 0.108186 TCCACACACATCTCATCCGC 60.108 55.000 0.00 0.00 0.00 5.54
273 274 1.472201 CCTCCACACACATCTCATCCG 60.472 57.143 0.00 0.00 0.00 4.18
274 275 1.833630 TCCTCCACACACATCTCATCC 59.166 52.381 0.00 0.00 0.00 3.51
275 276 2.762887 TCTCCTCCACACACATCTCATC 59.237 50.000 0.00 0.00 0.00 2.92
276 277 2.765135 CTCTCCTCCACACACATCTCAT 59.235 50.000 0.00 0.00 0.00 2.90
277 278 2.174360 CTCTCCTCCACACACATCTCA 58.826 52.381 0.00 0.00 0.00 3.27
278 279 2.175202 ACTCTCCTCCACACACATCTC 58.825 52.381 0.00 0.00 0.00 2.75
279 280 2.317371 ACTCTCCTCCACACACATCT 57.683 50.000 0.00 0.00 0.00 2.90
280 281 4.279671 CCTATACTCTCCTCCACACACATC 59.720 50.000 0.00 0.00 0.00 3.06
281 282 4.219115 CCTATACTCTCCTCCACACACAT 58.781 47.826 0.00 0.00 0.00 3.21
282 283 3.627492 CCCTATACTCTCCTCCACACACA 60.627 52.174 0.00 0.00 0.00 3.72
283 284 2.959707 CCCTATACTCTCCTCCACACAC 59.040 54.545 0.00 0.00 0.00 3.82
284 285 2.091278 CCCCTATACTCTCCTCCACACA 60.091 54.545 0.00 0.00 0.00 3.72
285 286 2.177233 TCCCCTATACTCTCCTCCACAC 59.823 54.545 0.00 0.00 0.00 3.82
286 287 2.510330 TCCCCTATACTCTCCTCCACA 58.490 52.381 0.00 0.00 0.00 4.17
287 288 3.614568 TTCCCCTATACTCTCCTCCAC 57.385 52.381 0.00 0.00 0.00 4.02
288 289 3.797845 TCTTTCCCCTATACTCTCCTCCA 59.202 47.826 0.00 0.00 0.00 3.86
289 290 4.154176 GTCTTTCCCCTATACTCTCCTCC 58.846 52.174 0.00 0.00 0.00 4.30
290 291 3.822167 CGTCTTTCCCCTATACTCTCCTC 59.178 52.174 0.00 0.00 0.00 3.71
291 292 3.462579 TCGTCTTTCCCCTATACTCTCCT 59.537 47.826 0.00 0.00 0.00 3.69
292 293 3.830121 TCGTCTTTCCCCTATACTCTCC 58.170 50.000 0.00 0.00 0.00 3.71
293 294 5.774630 CATTCGTCTTTCCCCTATACTCTC 58.225 45.833 0.00 0.00 0.00 3.20
294 295 4.039366 GCATTCGTCTTTCCCCTATACTCT 59.961 45.833 0.00 0.00 0.00 3.24
295 296 4.308265 GCATTCGTCTTTCCCCTATACTC 58.692 47.826 0.00 0.00 0.00 2.59
296 297 3.243771 CGCATTCGTCTTTCCCCTATACT 60.244 47.826 0.00 0.00 0.00 2.12
297 298 3.057734 CGCATTCGTCTTTCCCCTATAC 58.942 50.000 0.00 0.00 0.00 1.47
298 299 3.380479 CGCATTCGTCTTTCCCCTATA 57.620 47.619 0.00 0.00 0.00 1.31
299 300 2.240493 CGCATTCGTCTTTCCCCTAT 57.760 50.000 0.00 0.00 0.00 2.57
300 301 3.752796 CGCATTCGTCTTTCCCCTA 57.247 52.632 0.00 0.00 0.00 3.53
301 302 4.617875 CGCATTCGTCTTTCCCCT 57.382 55.556 0.00 0.00 0.00 4.79
312 313 3.064324 AAGGGCCTGCACGCATTC 61.064 61.111 6.92 0.00 0.00 2.67
313 314 3.376078 CAAGGGCCTGCACGCATT 61.376 61.111 6.92 1.31 0.00 3.56
314 315 4.666253 ACAAGGGCCTGCACGCAT 62.666 61.111 6.92 0.00 0.00 4.73
317 318 2.906897 AACACAAGGGCCTGCACG 60.907 61.111 6.92 0.00 0.00 5.34
318 319 2.730094 CAACACAAGGGCCTGCAC 59.270 61.111 6.92 0.00 0.00 4.57
319 320 3.225798 GCAACACAAGGGCCTGCA 61.226 61.111 6.92 0.00 33.19 4.41
320 321 4.347453 CGCAACACAAGGGCCTGC 62.347 66.667 6.92 4.68 0.00 4.85
321 322 2.906897 ACGCAACACAAGGGCCTG 60.907 61.111 6.92 3.83 0.00 4.85
322 323 2.906897 CACGCAACACAAGGGCCT 60.907 61.111 0.00 0.00 0.00 5.19
323 324 3.977244 CCACGCAACACAAGGGCC 61.977 66.667 0.00 0.00 0.00 5.80
324 325 4.645921 GCCACGCAACACAAGGGC 62.646 66.667 0.00 0.00 0.00 5.19
325 326 4.326766 CGCCACGCAACACAAGGG 62.327 66.667 0.00 0.00 0.00 3.95
326 327 3.521308 GACGCCACGCAACACAAGG 62.521 63.158 0.00 0.00 0.00 3.61
327 328 2.052237 GACGCCACGCAACACAAG 60.052 61.111 0.00 0.00 0.00 3.16
328 329 3.578272 GGACGCCACGCAACACAA 61.578 61.111 0.00 0.00 0.00 3.33
357 358 3.252484 GAACGATTCGGCCGGTCG 61.252 66.667 35.46 35.46 40.91 4.79
379 380 4.736631 GTTTCAGAACGGCGCGCC 62.737 66.667 39.82 39.82 0.00 6.53
387 388 5.934935 TGAATAGGGAAACGTTTCAGAAC 57.065 39.130 34.79 23.27 38.92 3.01
388 389 8.801882 ATAATGAATAGGGAAACGTTTCAGAA 57.198 30.769 34.79 22.14 38.92 3.02
389 390 8.801882 AATAATGAATAGGGAAACGTTTCAGA 57.198 30.769 34.79 22.36 38.92 3.27
391 392 9.675464 ACTAATAATGAATAGGGAAACGTTTCA 57.325 29.630 34.79 19.93 38.92 2.69
406 407 9.842775 TCTTCGGTCTACTCTACTAATAATGAA 57.157 33.333 0.00 0.00 0.00 2.57
407 408 9.842775 TTCTTCGGTCTACTCTACTAATAATGA 57.157 33.333 0.00 0.00 0.00 2.57
410 411 9.896645 TTCTTCTTCGGTCTACTCTACTAATAA 57.103 33.333 0.00 0.00 0.00 1.40
412 413 8.842280 CATTCTTCTTCGGTCTACTCTACTAAT 58.158 37.037 0.00 0.00 0.00 1.73
413 414 7.282675 CCATTCTTCTTCGGTCTACTCTACTAA 59.717 40.741 0.00 0.00 0.00 2.24
414 415 6.766944 CCATTCTTCTTCGGTCTACTCTACTA 59.233 42.308 0.00 0.00 0.00 1.82
415 416 5.591067 CCATTCTTCTTCGGTCTACTCTACT 59.409 44.000 0.00 0.00 0.00 2.57
416 417 5.733937 GCCATTCTTCTTCGGTCTACTCTAC 60.734 48.000 0.00 0.00 0.00 2.59
417 418 4.338682 GCCATTCTTCTTCGGTCTACTCTA 59.661 45.833 0.00 0.00 0.00 2.43
418 419 3.131400 GCCATTCTTCTTCGGTCTACTCT 59.869 47.826 0.00 0.00 0.00 3.24
419 420 3.449632 GCCATTCTTCTTCGGTCTACTC 58.550 50.000 0.00 0.00 0.00 2.59
420 421 2.168728 GGCCATTCTTCTTCGGTCTACT 59.831 50.000 0.00 0.00 0.00 2.57
421 422 2.168728 AGGCCATTCTTCTTCGGTCTAC 59.831 50.000 5.01 0.00 29.74 2.59
422 423 2.431057 GAGGCCATTCTTCTTCGGTCTA 59.569 50.000 5.01 0.00 32.36 2.59
423 424 1.208293 GAGGCCATTCTTCTTCGGTCT 59.792 52.381 5.01 0.00 35.78 3.85
424 425 1.066143 TGAGGCCATTCTTCTTCGGTC 60.066 52.381 5.01 0.00 0.00 4.79
425 426 0.984230 TGAGGCCATTCTTCTTCGGT 59.016 50.000 5.01 0.00 0.00 4.69
426 427 1.065854 AGTGAGGCCATTCTTCTTCGG 60.066 52.381 5.01 0.00 0.00 4.30
427 428 2.393271 AGTGAGGCCATTCTTCTTCG 57.607 50.000 5.01 0.00 0.00 3.79
428 429 3.190874 CGTAGTGAGGCCATTCTTCTTC 58.809 50.000 5.01 0.00 0.00 2.87
429 430 2.093447 CCGTAGTGAGGCCATTCTTCTT 60.093 50.000 5.01 0.00 0.00 2.52
430 431 1.482593 CCGTAGTGAGGCCATTCTTCT 59.517 52.381 5.01 0.75 0.00 2.85
431 432 1.473434 CCCGTAGTGAGGCCATTCTTC 60.473 57.143 5.01 0.00 0.00 2.87
432 433 0.541863 CCCGTAGTGAGGCCATTCTT 59.458 55.000 5.01 0.00 0.00 2.52
433 434 1.972660 GCCCGTAGTGAGGCCATTCT 61.973 60.000 5.01 1.76 43.76 2.40
434 435 1.523938 GCCCGTAGTGAGGCCATTC 60.524 63.158 5.01 0.00 43.76 2.67
435 436 2.590092 GCCCGTAGTGAGGCCATT 59.410 61.111 5.01 0.00 43.76 3.16
440 441 1.136500 GAACCTAAGCCCGTAGTGAGG 59.864 57.143 0.00 0.00 0.00 3.86
441 442 1.202268 CGAACCTAAGCCCGTAGTGAG 60.202 57.143 0.00 0.00 0.00 3.51
442 443 0.813184 CGAACCTAAGCCCGTAGTGA 59.187 55.000 0.00 0.00 0.00 3.41
443 444 0.804933 GCGAACCTAAGCCCGTAGTG 60.805 60.000 0.00 0.00 0.00 2.74
444 445 0.969409 AGCGAACCTAAGCCCGTAGT 60.969 55.000 0.00 0.00 0.00 2.73
445 446 0.527817 CAGCGAACCTAAGCCCGTAG 60.528 60.000 0.00 0.00 0.00 3.51
446 447 1.252904 ACAGCGAACCTAAGCCCGTA 61.253 55.000 0.00 0.00 0.00 4.02
447 448 2.264794 CAGCGAACCTAAGCCCGT 59.735 61.111 0.00 0.00 0.00 5.28
448 449 2.100631 CACAGCGAACCTAAGCCCG 61.101 63.158 0.00 0.00 0.00 6.13
449 450 0.741221 CTCACAGCGAACCTAAGCCC 60.741 60.000 0.00 0.00 0.00 5.19
450 451 0.741221 CCTCACAGCGAACCTAAGCC 60.741 60.000 0.00 0.00 0.00 4.35
451 452 1.362406 GCCTCACAGCGAACCTAAGC 61.362 60.000 0.00 0.00 0.00 3.09
452 453 0.247736 AGCCTCACAGCGAACCTAAG 59.752 55.000 0.00 0.00 38.01 2.18
453 454 0.037326 CAGCCTCACAGCGAACCTAA 60.037 55.000 0.00 0.00 38.01 2.69
454 455 1.591703 CAGCCTCACAGCGAACCTA 59.408 57.895 0.00 0.00 38.01 3.08
455 456 2.345244 CAGCCTCACAGCGAACCT 59.655 61.111 0.00 0.00 38.01 3.50
456 457 2.743928 CCAGCCTCACAGCGAACC 60.744 66.667 0.00 0.00 38.01 3.62
457 458 2.743928 CCCAGCCTCACAGCGAAC 60.744 66.667 0.00 0.00 38.01 3.95
458 459 4.704833 GCCCAGCCTCACAGCGAA 62.705 66.667 0.00 0.00 38.01 4.70
462 463 3.320879 ATCACGCCCAGCCTCACAG 62.321 63.158 0.00 0.00 0.00 3.66
463 464 3.315142 GATCACGCCCAGCCTCACA 62.315 63.158 0.00 0.00 0.00 3.58
464 465 2.512515 GATCACGCCCAGCCTCAC 60.513 66.667 0.00 0.00 0.00 3.51
465 466 3.002583 TGATCACGCCCAGCCTCA 61.003 61.111 0.00 0.00 0.00 3.86
466 467 2.512515 GTGATCACGCCCAGCCTC 60.513 66.667 10.69 0.00 0.00 4.70
467 468 4.101448 GGTGATCACGCCCAGCCT 62.101 66.667 19.33 0.00 40.47 4.58
468 469 4.408821 TGGTGATCACGCCCAGCC 62.409 66.667 19.33 4.57 45.20 4.85
469 470 3.127533 GTGGTGATCACGCCCAGC 61.128 66.667 19.33 5.25 45.20 4.85
500 501 9.322773 TGTTCACAAGAATCAAAATTTGCATAA 57.677 25.926 0.00 0.00 35.92 1.90
501 502 8.883954 TGTTCACAAGAATCAAAATTTGCATA 57.116 26.923 0.00 0.00 35.92 3.14
502 503 7.496591 ACTGTTCACAAGAATCAAAATTTGCAT 59.503 29.630 0.00 0.00 35.92 3.96
503 504 6.817641 ACTGTTCACAAGAATCAAAATTTGCA 59.182 30.769 0.00 0.00 35.92 4.08
504 505 7.237920 ACTGTTCACAAGAATCAAAATTTGC 57.762 32.000 0.00 0.00 35.92 3.68
509 510 8.279800 CGTACATACTGTTCACAAGAATCAAAA 58.720 33.333 0.00 0.00 35.92 2.44
510 511 7.095397 CCGTACATACTGTTCACAAGAATCAAA 60.095 37.037 0.00 0.00 35.92 2.69
511 512 6.367695 CCGTACATACTGTTCACAAGAATCAA 59.632 38.462 0.00 0.00 35.92 2.57
512 513 5.867174 CCGTACATACTGTTCACAAGAATCA 59.133 40.000 0.00 0.00 35.92 2.57
513 514 5.220416 GCCGTACATACTGTTCACAAGAATC 60.220 44.000 0.00 0.00 35.92 2.52
514 515 4.630069 GCCGTACATACTGTTCACAAGAAT 59.370 41.667 0.00 0.00 35.92 2.40
515 516 3.991773 GCCGTACATACTGTTCACAAGAA 59.008 43.478 0.00 0.00 0.00 2.52
516 517 3.006003 TGCCGTACATACTGTTCACAAGA 59.994 43.478 0.00 0.00 0.00 3.02
517 518 3.322369 TGCCGTACATACTGTTCACAAG 58.678 45.455 0.00 0.00 0.00 3.16
518 519 3.388345 TGCCGTACATACTGTTCACAA 57.612 42.857 0.00 0.00 0.00 3.33
519 520 3.388345 TTGCCGTACATACTGTTCACA 57.612 42.857 0.00 0.00 0.00 3.58
520 521 4.153475 ACATTTGCCGTACATACTGTTCAC 59.847 41.667 0.00 0.00 0.00 3.18
521 522 4.320023 ACATTTGCCGTACATACTGTTCA 58.680 39.130 0.00 0.00 0.00 3.18
522 523 4.939509 ACATTTGCCGTACATACTGTTC 57.060 40.909 0.00 0.00 0.00 3.18
523 524 4.331717 GCTACATTTGCCGTACATACTGTT 59.668 41.667 0.00 0.00 0.00 3.16
524 525 3.869246 GCTACATTTGCCGTACATACTGT 59.131 43.478 0.00 0.00 0.00 3.55
525 526 3.060540 CGCTACATTTGCCGTACATACTG 60.061 47.826 0.00 0.00 0.00 2.74
526 527 3.120792 CGCTACATTTGCCGTACATACT 58.879 45.455 0.00 0.00 0.00 2.12
527 528 3.117794 TCGCTACATTTGCCGTACATAC 58.882 45.455 0.00 0.00 0.00 2.39
528 529 3.439895 TCGCTACATTTGCCGTACATA 57.560 42.857 0.00 0.00 0.00 2.29
529 530 2.303163 TCGCTACATTTGCCGTACAT 57.697 45.000 0.00 0.00 0.00 2.29
530 531 2.081725 TTCGCTACATTTGCCGTACA 57.918 45.000 0.00 0.00 0.00 2.90
531 532 3.668596 AATTCGCTACATTTGCCGTAC 57.331 42.857 0.00 0.00 0.00 3.67
532 533 3.936453 AGAAATTCGCTACATTTGCCGTA 59.064 39.130 0.00 0.00 0.00 4.02
533 534 2.747446 AGAAATTCGCTACATTTGCCGT 59.253 40.909 0.00 0.00 0.00 5.68
534 535 3.063997 AGAGAAATTCGCTACATTTGCCG 59.936 43.478 0.00 0.00 0.00 5.69
535 536 4.622701 AGAGAAATTCGCTACATTTGCC 57.377 40.909 0.00 0.00 0.00 4.52
536 537 6.589830 TCTAGAGAAATTCGCTACATTTGC 57.410 37.500 2.32 0.00 0.00 3.68
541 542 9.517609 GAAGTAATTCTAGAGAAATTCGCTACA 57.482 33.333 2.32 0.00 37.61 2.74
542 543 8.683774 CGAAGTAATTCTAGAGAAATTCGCTAC 58.316 37.037 15.61 0.00 37.61 3.58
543 544 7.861372 CCGAAGTAATTCTAGAGAAATTCGCTA 59.139 37.037 19.46 6.31 37.84 4.26
544 545 6.697892 CCGAAGTAATTCTAGAGAAATTCGCT 59.302 38.462 19.46 4.42 37.84 4.93
545 546 6.696148 TCCGAAGTAATTCTAGAGAAATTCGC 59.304 38.462 19.46 0.00 37.84 4.70
546 547 8.804688 ATCCGAAGTAATTCTAGAGAAATTCG 57.195 34.615 18.60 18.60 38.29 3.34
550 551 9.379791 GGAAAATCCGAAGTAATTCTAGAGAAA 57.620 33.333 0.96 0.00 37.61 2.52
551 552 8.759782 AGGAAAATCCGAAGTAATTCTAGAGAA 58.240 33.333 0.96 0.00 42.75 2.87
552 553 8.307582 AGGAAAATCCGAAGTAATTCTAGAGA 57.692 34.615 0.96 0.00 42.75 3.10
553 554 8.821894 CAAGGAAAATCCGAAGTAATTCTAGAG 58.178 37.037 0.96 0.00 42.75 2.43
554 555 7.769044 CCAAGGAAAATCCGAAGTAATTCTAGA 59.231 37.037 0.96 0.00 42.75 2.43
555 556 7.012421 CCCAAGGAAAATCCGAAGTAATTCTAG 59.988 40.741 0.96 0.00 42.75 2.43
556 557 6.826741 CCCAAGGAAAATCCGAAGTAATTCTA 59.173 38.462 0.96 0.00 42.75 2.10
557 558 5.652452 CCCAAGGAAAATCCGAAGTAATTCT 59.348 40.000 0.96 0.00 42.75 2.40
558 559 5.678871 GCCCAAGGAAAATCCGAAGTAATTC 60.679 44.000 0.00 0.00 42.75 2.17
559 560 4.159693 GCCCAAGGAAAATCCGAAGTAATT 59.840 41.667 0.00 0.00 42.75 1.40
560 561 3.699538 GCCCAAGGAAAATCCGAAGTAAT 59.300 43.478 0.00 0.00 42.75 1.89
561 562 3.086282 GCCCAAGGAAAATCCGAAGTAA 58.914 45.455 0.00 0.00 42.75 2.24
562 563 2.619590 GGCCCAAGGAAAATCCGAAGTA 60.620 50.000 0.00 0.00 42.75 2.24
563 564 1.545841 GCCCAAGGAAAATCCGAAGT 58.454 50.000 0.00 0.00 42.75 3.01
564 565 0.817654 GGCCCAAGGAAAATCCGAAG 59.182 55.000 0.00 0.00 42.75 3.79
565 566 0.113385 TGGCCCAAGGAAAATCCGAA 59.887 50.000 0.00 0.00 42.75 4.30
566 567 0.610785 GTGGCCCAAGGAAAATCCGA 60.611 55.000 0.00 0.00 42.75 4.55
567 568 0.897863 TGTGGCCCAAGGAAAATCCG 60.898 55.000 0.00 0.00 42.75 4.18
568 569 1.276138 CTTGTGGCCCAAGGAAAATCC 59.724 52.381 20.40 0.00 45.70 3.01
569 570 2.749280 CTTGTGGCCCAAGGAAAATC 57.251 50.000 20.40 0.00 45.70 2.17
594 595 4.448210 GGTACATACGTGAATCCCATGTT 58.552 43.478 0.00 0.00 42.06 2.71
645 646 7.875316 ATAGAGTATTTGATGACACGTATGC 57.125 36.000 0.00 0.00 0.00 3.14
838 848 3.385749 GAGGATGCGGAAGGGCGAA 62.386 63.158 0.00 0.00 35.06 4.70
855 869 3.695357 TGAGAATGAGATGGAGGAGGA 57.305 47.619 0.00 0.00 0.00 3.71
873 887 5.003160 ACGTTGGTTGATGAATGAGAATGA 58.997 37.500 0.00 0.00 0.00 2.57
874 888 5.300969 ACGTTGGTTGATGAATGAGAATG 57.699 39.130 0.00 0.00 0.00 2.67
875 889 4.396166 GGACGTTGGTTGATGAATGAGAAT 59.604 41.667 0.00 0.00 0.00 2.40
876 890 3.751175 GGACGTTGGTTGATGAATGAGAA 59.249 43.478 0.00 0.00 0.00 2.87
877 891 3.007940 AGGACGTTGGTTGATGAATGAGA 59.992 43.478 0.00 0.00 0.00 3.27
887 901 1.202651 AGTTGGAGAGGACGTTGGTTG 60.203 52.381 0.00 0.00 0.00 3.77
888 902 1.070289 GAGTTGGAGAGGACGTTGGTT 59.930 52.381 0.00 0.00 0.00 3.67
889 903 0.680061 GAGTTGGAGAGGACGTTGGT 59.320 55.000 0.00 0.00 0.00 3.67
890 904 0.037232 GGAGTTGGAGAGGACGTTGG 60.037 60.000 0.00 0.00 0.00 3.77
906 920 3.557475 GGAGCAGGATGATGAGATTGGAG 60.557 52.174 0.00 0.00 39.69 3.86
907 921 2.371179 GGAGCAGGATGATGAGATTGGA 59.629 50.000 0.00 0.00 39.69 3.53
908 922 2.105993 TGGAGCAGGATGATGAGATTGG 59.894 50.000 0.00 0.00 39.69 3.16
938 952 0.871057 CGTACGTAGGTAGCTAGGGC 59.129 60.000 21.81 14.32 39.06 5.19
939 953 0.871057 GCGTACGTAGGTAGCTAGGG 59.129 60.000 21.81 11.29 0.00 3.53
940 954 1.262683 GTGCGTACGTAGGTAGCTAGG 59.737 57.143 17.90 17.67 0.00 3.02
941 955 1.070975 CGTGCGTACGTAGGTAGCTAG 60.071 57.143 18.32 0.00 44.99 3.42
942 956 0.930310 CGTGCGTACGTAGGTAGCTA 59.070 55.000 18.32 0.00 44.99 3.32
943 957 1.717937 CGTGCGTACGTAGGTAGCT 59.282 57.895 18.32 0.00 44.99 3.32
944 958 4.275282 CGTGCGTACGTAGGTAGC 57.725 61.111 18.32 10.43 44.99 3.58
960 977 4.368808 CGGTGGAACTTGCGTGCG 62.369 66.667 0.00 0.00 36.74 5.34
962 979 4.025401 GCCGGTGGAACTTGCGTG 62.025 66.667 1.90 0.00 36.74 5.34
963 980 4.555709 TGCCGGTGGAACTTGCGT 62.556 61.111 1.90 0.00 36.37 5.24
965 982 4.025401 CGTGCCGGTGGAACTTGC 62.025 66.667 1.90 0.00 36.74 4.01
966 983 1.635663 GATCGTGCCGGTGGAACTTG 61.636 60.000 1.90 0.00 36.74 3.16
967 984 1.375523 GATCGTGCCGGTGGAACTT 60.376 57.895 1.90 0.00 36.74 2.66
968 985 2.264794 GATCGTGCCGGTGGAACT 59.735 61.111 1.90 0.00 36.74 3.01
969 986 2.818274 GGATCGTGCCGGTGGAAC 60.818 66.667 1.90 0.00 0.00 3.62
970 987 2.587322 GATGGATCGTGCCGGTGGAA 62.587 60.000 1.90 0.00 0.00 3.53
971 988 3.080765 ATGGATCGTGCCGGTGGA 61.081 61.111 1.90 0.00 0.00 4.02
972 989 2.588877 GATGGATCGTGCCGGTGG 60.589 66.667 1.90 0.00 0.00 4.61
973 990 2.588877 GGATGGATCGTGCCGGTG 60.589 66.667 1.90 0.00 0.00 4.94
974 991 3.080765 TGGATGGATCGTGCCGGT 61.081 61.111 1.90 0.00 0.00 5.28
975 992 2.588877 GTGGATGGATCGTGCCGG 60.589 66.667 0.00 0.00 0.00 6.13
976 993 2.961721 CGTGGATGGATCGTGCCG 60.962 66.667 0.00 0.00 0.00 5.69
977 994 1.883084 GTCGTGGATGGATCGTGCC 60.883 63.158 0.00 0.00 0.00 5.01
978 995 1.883084 GGTCGTGGATGGATCGTGC 60.883 63.158 0.00 0.00 0.00 5.34
979 996 0.806102 GTGGTCGTGGATGGATCGTG 60.806 60.000 0.00 0.00 0.00 4.35
980 997 1.515954 GTGGTCGTGGATGGATCGT 59.484 57.895 0.00 0.00 0.00 3.73
1404 1430 2.597510 AAGTTGGTGAAGCGGCCC 60.598 61.111 0.00 0.00 0.00 5.80
1966 2371 1.135859 CGAAGAAAGAGTGTGGCATGC 60.136 52.381 9.90 9.90 0.00 4.06
1968 2373 1.072331 ACCGAAGAAAGAGTGTGGCAT 59.928 47.619 0.00 0.00 0.00 4.40
1969 2374 0.468226 ACCGAAGAAAGAGTGTGGCA 59.532 50.000 0.00 0.00 0.00 4.92
1970 2375 2.450609 TACCGAAGAAAGAGTGTGGC 57.549 50.000 0.00 0.00 0.00 5.01
1971 2376 5.125739 AGAGTATACCGAAGAAAGAGTGTGG 59.874 44.000 0.00 0.00 0.00 4.17
1972 2377 6.030849 CAGAGTATACCGAAGAAAGAGTGTG 58.969 44.000 0.00 0.00 0.00 3.82
1975 2380 8.522542 AATACAGAGTATACCGAAGAAAGAGT 57.477 34.615 0.00 0.00 0.00 3.24
1978 2383 7.707035 AGCAAATACAGAGTATACCGAAGAAAG 59.293 37.037 0.00 0.00 0.00 2.62
1979 2384 7.553334 AGCAAATACAGAGTATACCGAAGAAA 58.447 34.615 0.00 0.00 0.00 2.52
1982 2387 6.577800 CGTAGCAAATACAGAGTATACCGAAG 59.422 42.308 0.00 0.00 33.65 3.79
1983 2388 6.432936 CGTAGCAAATACAGAGTATACCGAA 58.567 40.000 0.00 0.00 33.65 4.30
1984 2389 5.993891 CGTAGCAAATACAGAGTATACCGA 58.006 41.667 0.00 0.00 33.65 4.69
2003 2408 0.179015 TCCAGAGCTCTAGGGCGTAG 60.179 60.000 17.75 7.90 37.29 3.51
2004 2409 0.257905 TTCCAGAGCTCTAGGGCGTA 59.742 55.000 17.75 1.90 37.29 4.42
2005 2410 1.000486 TTCCAGAGCTCTAGGGCGT 60.000 57.895 17.75 0.00 37.29 5.68
2006 2411 1.739049 CTTCCAGAGCTCTAGGGCG 59.261 63.158 17.75 3.17 37.29 6.13
2016 2421 0.389166 GACGTGTCAGGCTTCCAGAG 60.389 60.000 0.00 0.00 0.00 3.35
2017 2422 1.112916 TGACGTGTCAGGCTTCCAGA 61.113 55.000 0.00 0.00 34.14 3.86
2018 2423 1.367471 TGACGTGTCAGGCTTCCAG 59.633 57.895 0.00 0.00 34.14 3.86
2019 2424 3.544772 TGACGTGTCAGGCTTCCA 58.455 55.556 0.00 0.00 34.14 3.53
2027 2432 2.029518 CAGCAGCCTGACGTGTCA 59.970 61.111 0.00 2.28 41.77 3.58
2028 2433 3.418068 GCAGCAGCCTGACGTGTC 61.418 66.667 0.00 0.00 41.77 3.67
2029 2434 3.873026 GAGCAGCAGCCTGACGTGT 62.873 63.158 0.00 0.00 41.77 4.49
2030 2435 3.117171 GAGCAGCAGCCTGACGTG 61.117 66.667 0.00 0.00 41.77 4.49
2031 2436 4.731612 CGAGCAGCAGCCTGACGT 62.732 66.667 0.00 0.00 41.77 4.34
2054 2459 3.129502 CACACCGGCCATCAGCAG 61.130 66.667 0.00 0.00 46.50 4.24
2055 2460 3.952508 ACACACCGGCCATCAGCA 61.953 61.111 0.00 0.00 46.50 4.41
2056 2461 3.434319 CACACACCGGCCATCAGC 61.434 66.667 0.00 0.00 42.60 4.26
2057 2462 1.300971 CTTCACACACCGGCCATCAG 61.301 60.000 0.00 0.00 0.00 2.90
2058 2463 1.302431 CTTCACACACCGGCCATCA 60.302 57.895 0.00 0.00 0.00 3.07
2059 2464 1.302511 ACTTCACACACCGGCCATC 60.303 57.895 0.00 0.00 0.00 3.51
2060 2465 1.600636 CACTTCACACACCGGCCAT 60.601 57.895 0.00 0.00 0.00 4.40
2061 2466 2.203139 CACTTCACACACCGGCCA 60.203 61.111 0.00 0.00 0.00 5.36
2062 2467 1.782028 GAACACTTCACACACCGGCC 61.782 60.000 0.00 0.00 0.00 6.13
2063 2468 1.647084 GAACACTTCACACACCGGC 59.353 57.895 0.00 0.00 0.00 6.13
2064 2469 1.495584 CCGAACACTTCACACACCGG 61.496 60.000 0.00 0.00 0.00 5.28
2065 2470 1.495584 CCCGAACACTTCACACACCG 61.496 60.000 0.00 0.00 0.00 4.94
2066 2471 0.179067 TCCCGAACACTTCACACACC 60.179 55.000 0.00 0.00 0.00 4.16
2067 2472 1.329599 GTTCCCGAACACTTCACACAC 59.670 52.381 2.69 0.00 40.84 3.82
2068 2473 1.658994 GTTCCCGAACACTTCACACA 58.341 50.000 2.69 0.00 40.84 3.72
2069 2474 0.580104 CGTTCCCGAACACTTCACAC 59.420 55.000 8.23 0.00 41.20 3.82
2070 2475 0.176219 ACGTTCCCGAACACTTCACA 59.824 50.000 8.23 0.00 41.20 3.58
2071 2476 2.056577 CTACGTTCCCGAACACTTCAC 58.943 52.381 8.23 0.00 41.20 3.18
2072 2477 1.682854 ACTACGTTCCCGAACACTTCA 59.317 47.619 8.23 0.00 41.20 3.02
2073 2478 2.428888 ACTACGTTCCCGAACACTTC 57.571 50.000 8.23 0.00 41.20 3.01
2074 2479 4.525912 ATTACTACGTTCCCGAACACTT 57.474 40.909 8.23 0.00 41.20 3.16
2075 2480 4.525912 AATTACTACGTTCCCGAACACT 57.474 40.909 8.23 0.00 41.20 3.55
2076 2481 5.596268 AAAATTACTACGTTCCCGAACAC 57.404 39.130 8.23 0.00 41.20 3.32
2194 2601 3.784701 ACCTACTCTATGTTGCGTCAG 57.215 47.619 0.00 0.00 0.00 3.51
2210 2617 2.738643 CGGGAAGACGTACGACTACCTA 60.739 54.545 24.41 0.00 0.00 3.08
2212 2619 0.375106 CGGGAAGACGTACGACTACC 59.625 60.000 24.41 23.00 0.00 3.18
2302 2709 3.154473 CTGGATCGAAGCCCGGGA 61.154 66.667 29.31 1.71 39.14 5.14
2417 2824 2.621998 CCTCCACGATATTACACCTCGT 59.378 50.000 0.00 0.00 45.73 4.18
2953 3505 1.687493 CGGGAAAGAGAGAGGGGCT 60.687 63.158 0.00 0.00 0.00 5.19
2954 3506 0.686769 TACGGGAAAGAGAGAGGGGC 60.687 60.000 0.00 0.00 0.00 5.80
2955 3507 1.689273 CATACGGGAAAGAGAGAGGGG 59.311 57.143 0.00 0.00 0.00 4.79
2956 3508 1.689273 CCATACGGGAAAGAGAGAGGG 59.311 57.143 0.00 0.00 40.01 4.30
2957 3509 1.069358 GCCATACGGGAAAGAGAGAGG 59.931 57.143 0.00 0.00 40.01 3.69
2958 3510 1.069358 GGCCATACGGGAAAGAGAGAG 59.931 57.143 0.00 0.00 40.01 3.20
2959 3511 1.120530 GGCCATACGGGAAAGAGAGA 58.879 55.000 0.00 0.00 40.01 3.10
2960 3512 0.106894 GGGCCATACGGGAAAGAGAG 59.893 60.000 4.39 0.00 40.01 3.20
2961 3513 0.619255 TGGGCCATACGGGAAAGAGA 60.619 55.000 0.00 0.00 40.01 3.10
2962 3514 0.254747 TTGGGCCATACGGGAAAGAG 59.745 55.000 7.26 0.00 40.01 2.85
2963 3515 0.923358 ATTGGGCCATACGGGAAAGA 59.077 50.000 7.26 0.00 40.01 2.52
2964 3516 2.649531 TATTGGGCCATACGGGAAAG 57.350 50.000 7.26 0.00 40.01 2.62
2965 3517 2.423660 CCTTATTGGGCCATACGGGAAA 60.424 50.000 7.26 0.00 40.01 3.13
2966 3518 1.144093 CCTTATTGGGCCATACGGGAA 59.856 52.381 7.26 0.00 40.01 3.97
2967 3519 0.768622 CCTTATTGGGCCATACGGGA 59.231 55.000 7.26 0.00 40.01 5.14
2968 3520 0.893727 GCCTTATTGGGCCATACGGG 60.894 60.000 7.26 9.39 45.92 5.28
2969 3521 2.641197 GCCTTATTGGGCCATACGG 58.359 57.895 7.26 10.25 45.92 4.02
2977 3529 4.145052 GAGAAGTATTGGGCCTTATTGGG 58.855 47.826 4.53 0.00 36.00 4.12
2978 3530 4.145052 GGAGAAGTATTGGGCCTTATTGG 58.855 47.826 4.53 0.00 39.35 3.16
2979 3531 4.145052 GGGAGAAGTATTGGGCCTTATTG 58.855 47.826 4.53 0.00 0.00 1.90
2980 3532 3.140332 GGGGAGAAGTATTGGGCCTTATT 59.860 47.826 4.53 0.00 0.00 1.40
2981 3533 2.716969 GGGGAGAAGTATTGGGCCTTAT 59.283 50.000 4.53 0.50 0.00 1.73
2982 3534 2.132686 GGGGAGAAGTATTGGGCCTTA 58.867 52.381 4.53 0.00 0.00 2.69
2983 3535 0.927029 GGGGAGAAGTATTGGGCCTT 59.073 55.000 4.53 0.00 0.00 4.35
2984 3536 0.994050 GGGGGAGAAGTATTGGGCCT 60.994 60.000 4.53 0.00 0.00 5.19
2985 3537 1.537172 GGGGGAGAAGTATTGGGCC 59.463 63.158 0.00 0.00 0.00 5.80
2986 3538 1.148498 CGGGGGAGAAGTATTGGGC 59.852 63.158 0.00 0.00 0.00 5.36
2987 3539 1.797320 TACGGGGGAGAAGTATTGGG 58.203 55.000 0.00 0.00 0.00 4.12
2988 3540 3.740115 CAATACGGGGGAGAAGTATTGG 58.260 50.000 15.69 2.82 46.66 3.16
2990 3542 2.105993 GGCAATACGGGGGAGAAGTATT 59.894 50.000 0.00 0.00 40.46 1.89
2991 3543 1.697982 GGCAATACGGGGGAGAAGTAT 59.302 52.381 0.00 0.00 33.00 2.12
2992 3544 1.125633 GGCAATACGGGGGAGAAGTA 58.874 55.000 0.00 0.00 0.00 2.24
2993 3545 1.912971 GGCAATACGGGGGAGAAGT 59.087 57.895 0.00 0.00 0.00 3.01
2994 3546 1.227556 CGGCAATACGGGGGAGAAG 60.228 63.158 0.00 0.00 0.00 2.85
2995 3547 1.991167 ACGGCAATACGGGGGAGAA 60.991 57.895 0.00 0.00 38.39 2.87
2996 3548 2.364579 ACGGCAATACGGGGGAGA 60.365 61.111 0.00 0.00 38.39 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.