Multiple sequence alignment - TraesCS1B01G387900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G387900 chr1B 100.000 2940 0 0 1 2940 622069612 622072551 0.000000e+00 5430.0
1 TraesCS1B01G387900 chr1B 96.758 987 32 0 1954 2940 403530598 403531584 0.000000e+00 1646.0
2 TraesCS1B01G387900 chr1B 96.573 992 29 3 1952 2940 615521450 615520461 0.000000e+00 1639.0
3 TraesCS1B01G387900 chr1B 96.364 990 33 1 1954 2940 169670973 169671962 0.000000e+00 1626.0
4 TraesCS1B01G387900 chr1B 86.647 1011 112 15 1938 2940 508699067 508700062 0.000000e+00 1098.0
5 TraesCS1B01G387900 chr7B 96.970 990 24 2 1954 2940 368802184 368801198 0.000000e+00 1657.0
6 TraesCS1B01G387900 chr7B 89.415 992 86 10 1954 2940 34173387 34174364 0.000000e+00 1232.0
7 TraesCS1B01G387900 chr7B 76.587 252 55 4 397 646 164504298 164504547 5.110000e-28 135.0
8 TraesCS1B01G387900 chr6B 95.556 990 41 1 1954 2940 369031519 369030530 0.000000e+00 1581.0
9 TraesCS1B01G387900 chr6B 87.931 58 6 1 819 875 698046270 698046213 1.890000e-07 67.6
10 TraesCS1B01G387900 chr3B 93.457 1024 29 16 1954 2940 707625724 707626746 0.000000e+00 1485.0
11 TraesCS1B01G387900 chr1D 91.103 1034 51 20 954 1951 452207745 452208773 0.000000e+00 1362.0
12 TraesCS1B01G387900 chr1D 79.726 656 103 15 239 877 452206928 452207570 5.780000e-122 448.0
13 TraesCS1B01G387900 chr4B 87.185 991 102 15 1954 2940 409339173 409338204 0.000000e+00 1103.0
14 TraesCS1B01G387900 chr2B 90.943 795 60 6 2146 2940 768035523 768034741 0.000000e+00 1059.0
15 TraesCS1B01G387900 chr2B 83.750 880 107 17 964 1834 665420633 665419781 0.000000e+00 800.0
16 TraesCS1B01G387900 chr2B 81.836 1002 130 24 964 1943 665446860 665445889 0.000000e+00 795.0
17 TraesCS1B01G387900 chr6A 86.016 994 127 8 1954 2940 84059992 84059004 0.000000e+00 1055.0
18 TraesCS1B01G387900 chr1A 83.556 973 119 19 1001 1943 547004331 547005292 0.000000e+00 872.0
19 TraesCS1B01G387900 chr1A 76.596 282 54 9 355 626 285955105 285955384 8.490000e-31 145.0
20 TraesCS1B01G387900 chr1A 75.630 238 37 16 1600 1819 2075403 2075637 6.710000e-17 99.0
21 TraesCS1B01G387900 chr2A 82.440 1008 122 27 958 1943 697376406 697375432 0.000000e+00 830.0
22 TraesCS1B01G387900 chrUn 83.750 880 107 17 964 1834 329015358 329014506 0.000000e+00 800.0
23 TraesCS1B01G387900 chr7D 79.331 837 140 19 1006 1834 61759690 61760501 9.200000e-155 556.0
24 TraesCS1B01G387900 chr3D 79.538 303 52 9 335 631 7510704 7510406 1.070000e-49 207.0
25 TraesCS1B01G387900 chr3D 77.592 299 63 4 335 632 323255699 323255404 8.370000e-41 178.0
26 TraesCS1B01G387900 chr3D 78.261 276 51 7 357 626 123617118 123617390 5.040000e-38 169.0
27 TraesCS1B01G387900 chr3D 76.950 282 57 6 355 630 607008395 607008116 1.410000e-33 154.0
28 TraesCS1B01G387900 chr3D 75.510 294 64 6 335 623 586327350 586327640 1.420000e-28 137.0
29 TraesCS1B01G387900 chr7A 75.824 273 57 7 376 642 570137226 570136957 2.380000e-26 130.0
30 TraesCS1B01G387900 chr7A 100.000 34 0 0 828 861 685384619 685384586 2.450000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G387900 chr1B 622069612 622072551 2939 False 5430 5430 100.0000 1 2940 1 chr1B.!!$F4 2939
1 TraesCS1B01G387900 chr1B 403530598 403531584 986 False 1646 1646 96.7580 1954 2940 1 chr1B.!!$F2 986
2 TraesCS1B01G387900 chr1B 615520461 615521450 989 True 1639 1639 96.5730 1952 2940 1 chr1B.!!$R1 988
3 TraesCS1B01G387900 chr1B 169670973 169671962 989 False 1626 1626 96.3640 1954 2940 1 chr1B.!!$F1 986
4 TraesCS1B01G387900 chr1B 508699067 508700062 995 False 1098 1098 86.6470 1938 2940 1 chr1B.!!$F3 1002
5 TraesCS1B01G387900 chr7B 368801198 368802184 986 True 1657 1657 96.9700 1954 2940 1 chr7B.!!$R1 986
6 TraesCS1B01G387900 chr7B 34173387 34174364 977 False 1232 1232 89.4150 1954 2940 1 chr7B.!!$F1 986
7 TraesCS1B01G387900 chr6B 369030530 369031519 989 True 1581 1581 95.5560 1954 2940 1 chr6B.!!$R1 986
8 TraesCS1B01G387900 chr3B 707625724 707626746 1022 False 1485 1485 93.4570 1954 2940 1 chr3B.!!$F1 986
9 TraesCS1B01G387900 chr1D 452206928 452208773 1845 False 905 1362 85.4145 239 1951 2 chr1D.!!$F1 1712
10 TraesCS1B01G387900 chr4B 409338204 409339173 969 True 1103 1103 87.1850 1954 2940 1 chr4B.!!$R1 986
11 TraesCS1B01G387900 chr2B 768034741 768035523 782 True 1059 1059 90.9430 2146 2940 1 chr2B.!!$R3 794
12 TraesCS1B01G387900 chr2B 665419781 665420633 852 True 800 800 83.7500 964 1834 1 chr2B.!!$R1 870
13 TraesCS1B01G387900 chr2B 665445889 665446860 971 True 795 795 81.8360 964 1943 1 chr2B.!!$R2 979
14 TraesCS1B01G387900 chr6A 84059004 84059992 988 True 1055 1055 86.0160 1954 2940 1 chr6A.!!$R1 986
15 TraesCS1B01G387900 chr1A 547004331 547005292 961 False 872 872 83.5560 1001 1943 1 chr1A.!!$F3 942
16 TraesCS1B01G387900 chr2A 697375432 697376406 974 True 830 830 82.4400 958 1943 1 chr2A.!!$R1 985
17 TraesCS1B01G387900 chrUn 329014506 329015358 852 True 800 800 83.7500 964 1834 1 chrUn.!!$R1 870
18 TraesCS1B01G387900 chr7D 61759690 61760501 811 False 556 556 79.3310 1006 1834 1 chr7D.!!$F1 828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 925 0.035343 AAACTTAGCTCTTCCCCGCC 60.035 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2826 3097 0.392461 GAGGTCTGGGCAAACGCATA 60.392 55.0 0.0 0.0 38.19 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.649782 AAAATGAGCATTTTCCGAGACAT 57.350 34.783 13.77 0.00 44.98 3.06
35 36 5.649782 AAATGAGCATTTTCCGAGACATT 57.350 34.783 2.74 0.00 37.74 2.71
36 37 6.757897 AAATGAGCATTTTCCGAGACATTA 57.242 33.333 2.74 0.00 37.74 1.90
37 38 6.757897 AATGAGCATTTTCCGAGACATTAA 57.242 33.333 0.00 0.00 0.00 1.40
38 39 6.757897 ATGAGCATTTTCCGAGACATTAAA 57.242 33.333 0.00 0.00 0.00 1.52
39 40 6.567687 TGAGCATTTTCCGAGACATTAAAA 57.432 33.333 0.00 0.00 0.00 1.52
40 41 6.976088 TGAGCATTTTCCGAGACATTAAAAA 58.024 32.000 0.00 0.00 0.00 1.94
41 42 7.601856 TGAGCATTTTCCGAGACATTAAAAAT 58.398 30.769 0.00 0.00 31.54 1.82
42 43 7.754924 TGAGCATTTTCCGAGACATTAAAAATC 59.245 33.333 0.00 0.00 29.54 2.17
43 44 7.601856 AGCATTTTCCGAGACATTAAAAATCA 58.398 30.769 0.00 0.00 29.54 2.57
44 45 7.542130 AGCATTTTCCGAGACATTAAAAATCAC 59.458 33.333 0.00 0.00 29.54 3.06
45 46 7.542130 GCATTTTCCGAGACATTAAAAATCACT 59.458 33.333 0.00 0.00 29.54 3.41
46 47 9.410556 CATTTTCCGAGACATTAAAAATCACTT 57.589 29.630 0.00 0.00 29.54 3.16
47 48 9.981114 ATTTTCCGAGACATTAAAAATCACTTT 57.019 25.926 0.00 0.00 0.00 2.66
48 49 9.810545 TTTTCCGAGACATTAAAAATCACTTTT 57.189 25.926 0.00 0.00 40.42 2.27
49 50 9.810545 TTTCCGAGACATTAAAAATCACTTTTT 57.189 25.926 2.12 2.12 44.61 1.94
50 51 8.795786 TCCGAGACATTAAAAATCACTTTTTG 57.204 30.769 6.37 0.00 42.89 2.44
51 52 7.865385 TCCGAGACATTAAAAATCACTTTTTGG 59.135 33.333 6.37 0.00 42.89 3.28
52 53 7.651704 CCGAGACATTAAAAATCACTTTTTGGT 59.348 33.333 6.37 3.00 42.89 3.67
53 54 8.479280 CGAGACATTAAAAATCACTTTTTGGTG 58.521 33.333 6.37 7.14 42.89 4.17
54 55 9.313118 GAGACATTAAAAATCACTTTTTGGTGT 57.687 29.630 6.37 9.51 42.89 4.16
55 56 9.313118 AGACATTAAAAATCACTTTTTGGTGTC 57.687 29.630 20.69 20.69 45.72 3.67
56 57 9.313118 GACATTAAAAATCACTTTTTGGTGTCT 57.687 29.630 20.82 5.35 44.36 3.41
57 58 9.313118 ACATTAAAAATCACTTTTTGGTGTCTC 57.687 29.630 6.37 0.00 42.89 3.36
58 59 9.311916 CATTAAAAATCACTTTTTGGTGTCTCA 57.688 29.630 6.37 0.00 42.89 3.27
59 60 9.883142 ATTAAAAATCACTTTTTGGTGTCTCAA 57.117 25.926 6.37 0.00 42.89 3.02
60 61 7.832503 AAAAATCACTTTTTGGTGTCTCAAG 57.167 32.000 0.00 0.00 41.77 3.02
61 62 6.530019 AAATCACTTTTTGGTGTCTCAAGT 57.470 33.333 0.00 0.00 38.28 3.16
62 63 6.530019 AATCACTTTTTGGTGTCTCAAGTT 57.470 33.333 0.00 0.00 38.28 2.66
63 64 5.975693 TCACTTTTTGGTGTCTCAAGTTT 57.024 34.783 0.00 0.00 38.28 2.66
64 65 6.339587 TCACTTTTTGGTGTCTCAAGTTTT 57.660 33.333 0.00 0.00 38.28 2.43
65 66 7.455641 TCACTTTTTGGTGTCTCAAGTTTTA 57.544 32.000 0.00 0.00 38.28 1.52
66 67 7.309920 TCACTTTTTGGTGTCTCAAGTTTTAC 58.690 34.615 0.00 0.00 38.28 2.01
67 68 7.040340 TCACTTTTTGGTGTCTCAAGTTTTACA 60.040 33.333 0.00 0.00 38.28 2.41
68 69 7.759433 CACTTTTTGGTGTCTCAAGTTTTACAT 59.241 33.333 0.00 0.00 33.04 2.29
69 70 7.973944 ACTTTTTGGTGTCTCAAGTTTTACATC 59.026 33.333 0.00 0.00 0.00 3.06
70 71 7.397892 TTTTGGTGTCTCAAGTTTTACATCA 57.602 32.000 0.00 0.00 31.36 3.07
71 72 7.397892 TTTGGTGTCTCAAGTTTTACATCAA 57.602 32.000 0.00 0.00 40.26 2.57
72 73 6.618287 TGGTGTCTCAAGTTTTACATCAAG 57.382 37.500 0.00 0.00 30.34 3.02
73 74 5.530915 TGGTGTCTCAAGTTTTACATCAAGG 59.469 40.000 0.00 0.00 30.34 3.61
74 75 5.763204 GGTGTCTCAAGTTTTACATCAAGGA 59.237 40.000 0.00 0.00 0.00 3.36
75 76 6.293462 GGTGTCTCAAGTTTTACATCAAGGAC 60.293 42.308 0.00 0.00 0.00 3.85
76 77 6.483640 GTGTCTCAAGTTTTACATCAAGGACT 59.516 38.462 0.00 0.00 0.00 3.85
77 78 7.012421 GTGTCTCAAGTTTTACATCAAGGACTT 59.988 37.037 0.00 0.00 0.00 3.01
78 79 7.556275 TGTCTCAAGTTTTACATCAAGGACTTT 59.444 33.333 0.00 0.00 0.00 2.66
79 80 8.406297 GTCTCAAGTTTTACATCAAGGACTTTT 58.594 33.333 0.00 0.00 0.00 2.27
80 81 8.966868 TCTCAAGTTTTACATCAAGGACTTTTT 58.033 29.630 0.00 0.00 0.00 1.94
81 82 9.237846 CTCAAGTTTTACATCAAGGACTTTTTC 57.762 33.333 0.00 0.00 0.00 2.29
82 83 8.966868 TCAAGTTTTACATCAAGGACTTTTTCT 58.033 29.630 0.00 0.00 0.00 2.52
85 86 8.847196 AGTTTTACATCAAGGACTTTTTCTACC 58.153 33.333 0.00 0.00 0.00 3.18
86 87 7.754851 TTTACATCAAGGACTTTTTCTACCC 57.245 36.000 0.00 0.00 0.00 3.69
87 88 5.584551 ACATCAAGGACTTTTTCTACCCT 57.415 39.130 0.00 0.00 0.00 4.34
88 89 6.697641 ACATCAAGGACTTTTTCTACCCTA 57.302 37.500 0.00 0.00 0.00 3.53
89 90 7.272144 ACATCAAGGACTTTTTCTACCCTAT 57.728 36.000 0.00 0.00 0.00 2.57
90 91 7.699878 ACATCAAGGACTTTTTCTACCCTATT 58.300 34.615 0.00 0.00 0.00 1.73
91 92 8.832735 ACATCAAGGACTTTTTCTACCCTATTA 58.167 33.333 0.00 0.00 0.00 0.98
92 93 9.853177 CATCAAGGACTTTTTCTACCCTATTAT 57.147 33.333 0.00 0.00 0.00 1.28
133 134 9.498176 GGTATACCCTATTATAGGTTGTTGTTG 57.502 37.037 16.25 2.13 44.73 3.33
136 137 7.696992 ACCCTATTATAGGTTGTTGTTGTTG 57.303 36.000 16.25 0.37 44.73 3.33
137 138 7.463431 ACCCTATTATAGGTTGTTGTTGTTGA 58.537 34.615 16.25 0.00 44.73 3.18
138 139 7.945664 ACCCTATTATAGGTTGTTGTTGTTGAA 59.054 33.333 16.25 0.00 44.73 2.69
139 140 8.458843 CCCTATTATAGGTTGTTGTTGTTGAAG 58.541 37.037 16.25 0.00 44.73 3.02
140 141 9.226606 CCTATTATAGGTTGTTGTTGTTGAAGA 57.773 33.333 10.02 0.00 41.18 2.87
143 144 4.045636 AGGTTGTTGTTGTTGAAGATGC 57.954 40.909 0.00 0.00 0.00 3.91
144 145 3.701040 AGGTTGTTGTTGTTGAAGATGCT 59.299 39.130 0.00 0.00 0.00 3.79
145 146 4.044426 GGTTGTTGTTGTTGAAGATGCTC 58.956 43.478 0.00 0.00 0.00 4.26
146 147 4.202050 GGTTGTTGTTGTTGAAGATGCTCT 60.202 41.667 0.00 0.00 0.00 4.09
147 148 5.008613 GGTTGTTGTTGTTGAAGATGCTCTA 59.991 40.000 0.00 0.00 0.00 2.43
148 149 6.459573 GGTTGTTGTTGTTGAAGATGCTCTAA 60.460 38.462 0.00 0.00 0.00 2.10
149 150 6.304356 TGTTGTTGTTGAAGATGCTCTAAG 57.696 37.500 0.00 0.00 0.00 2.18
150 151 5.822519 TGTTGTTGTTGAAGATGCTCTAAGT 59.177 36.000 0.00 0.00 0.00 2.24
151 152 6.989759 TGTTGTTGTTGAAGATGCTCTAAGTA 59.010 34.615 0.00 0.00 0.00 2.24
152 153 7.171508 TGTTGTTGTTGAAGATGCTCTAAGTAG 59.828 37.037 0.00 0.00 0.00 2.57
153 154 6.759272 TGTTGTTGAAGATGCTCTAAGTAGT 58.241 36.000 0.00 0.00 0.00 2.73
154 155 7.892609 TGTTGTTGAAGATGCTCTAAGTAGTA 58.107 34.615 0.00 0.00 0.00 1.82
155 156 7.813148 TGTTGTTGAAGATGCTCTAAGTAGTAC 59.187 37.037 0.00 0.00 0.00 2.73
156 157 7.704578 TGTTGAAGATGCTCTAAGTAGTACT 57.295 36.000 0.00 0.00 0.00 2.73
157 158 8.803397 TGTTGAAGATGCTCTAAGTAGTACTA 57.197 34.615 2.50 0.00 0.00 1.82
158 159 8.675504 TGTTGAAGATGCTCTAAGTAGTACTAC 58.324 37.037 23.03 23.03 36.35 2.73
163 164 9.729281 AAGATGCTCTAAGTAGTACTACTATCC 57.271 37.037 30.89 18.92 44.96 2.59
164 165 9.108111 AGATGCTCTAAGTAGTACTACTATCCT 57.892 37.037 30.89 19.74 44.96 3.24
167 168 9.599056 TGCTCTAAGTAGTACTACTATCCTAGA 57.401 37.037 30.89 28.09 44.96 2.43
179 180 7.994194 ACTACTATCCTAGAAAGGTTTGTACG 58.006 38.462 0.00 0.00 44.09 3.67
180 181 6.218108 ACTATCCTAGAAAGGTTTGTACGG 57.782 41.667 0.00 0.00 44.09 4.02
181 182 5.718607 ACTATCCTAGAAAGGTTTGTACGGT 59.281 40.000 0.00 0.00 44.09 4.83
182 183 6.891908 ACTATCCTAGAAAGGTTTGTACGGTA 59.108 38.462 0.00 0.00 44.09 4.02
183 184 5.391312 TCCTAGAAAGGTTTGTACGGTAC 57.609 43.478 11.33 11.33 44.09 3.34
184 185 4.832266 TCCTAGAAAGGTTTGTACGGTACA 59.168 41.667 16.63 16.63 44.09 2.90
185 186 5.304101 TCCTAGAAAGGTTTGTACGGTACAA 59.696 40.000 25.48 25.48 43.64 2.41
186 187 5.636543 CCTAGAAAGGTTTGTACGGTACAAG 59.363 44.000 26.99 15.64 40.76 3.16
187 188 7.287661 CCTAGAAAGGTTTGTACGGTACAAGG 61.288 46.154 26.99 19.60 40.76 3.61
192 193 2.914695 TTGTACGGTACAAGGCTTGT 57.085 45.000 32.96 32.96 43.23 3.16
193 194 2.914695 TGTACGGTACAAGGCTTGTT 57.085 45.000 35.13 20.87 42.22 2.83
194 195 4.333913 TTGTACGGTACAAGGCTTGTTA 57.666 40.909 35.13 19.85 43.23 2.41
195 196 3.916761 TGTACGGTACAAGGCTTGTTAG 58.083 45.455 35.13 26.43 42.22 2.34
196 197 1.804601 ACGGTACAAGGCTTGTTAGC 58.195 50.000 35.13 25.82 42.22 3.09
197 198 1.346722 ACGGTACAAGGCTTGTTAGCT 59.653 47.619 35.13 14.77 46.90 3.32
198 199 1.732259 CGGTACAAGGCTTGTTAGCTG 59.268 52.381 35.13 24.66 46.90 4.24
199 200 2.779506 GGTACAAGGCTTGTTAGCTGT 58.220 47.619 35.13 14.21 46.90 4.40
200 201 2.484264 GGTACAAGGCTTGTTAGCTGTG 59.516 50.000 35.13 6.85 46.90 3.66
201 202 2.348411 ACAAGGCTTGTTAGCTGTGT 57.652 45.000 26.54 1.61 46.90 3.72
202 203 2.222027 ACAAGGCTTGTTAGCTGTGTC 58.778 47.619 26.54 0.00 46.90 3.67
203 204 2.158755 ACAAGGCTTGTTAGCTGTGTCT 60.159 45.455 26.54 0.00 46.90 3.41
204 205 2.464157 AGGCTTGTTAGCTGTGTCTC 57.536 50.000 0.00 0.00 46.90 3.36
205 206 1.694150 AGGCTTGTTAGCTGTGTCTCA 59.306 47.619 0.00 0.00 46.90 3.27
206 207 2.304180 AGGCTTGTTAGCTGTGTCTCAT 59.696 45.455 0.00 0.00 46.90 2.90
207 208 2.417933 GGCTTGTTAGCTGTGTCTCATG 59.582 50.000 0.00 0.00 46.90 3.07
208 209 2.417933 GCTTGTTAGCTGTGTCTCATGG 59.582 50.000 0.00 0.00 44.27 3.66
209 210 3.866066 GCTTGTTAGCTGTGTCTCATGGA 60.866 47.826 0.00 0.00 44.27 3.41
210 211 4.511527 CTTGTTAGCTGTGTCTCATGGAT 58.488 43.478 0.00 0.00 0.00 3.41
211 212 4.128925 TGTTAGCTGTGTCTCATGGATC 57.871 45.455 0.00 0.00 0.00 3.36
212 213 3.515104 TGTTAGCTGTGTCTCATGGATCA 59.485 43.478 0.00 0.00 0.00 2.92
213 214 2.983907 AGCTGTGTCTCATGGATCAG 57.016 50.000 0.00 4.42 34.46 2.90
214 215 2.186243 AGCTGTGTCTCATGGATCAGT 58.814 47.619 0.00 0.00 34.14 3.41
215 216 2.093606 AGCTGTGTCTCATGGATCAGTG 60.094 50.000 0.00 0.00 34.14 3.66
216 217 2.277969 CTGTGTCTCATGGATCAGTGC 58.722 52.381 0.00 0.00 0.00 4.40
217 218 1.624813 TGTGTCTCATGGATCAGTGCA 59.375 47.619 0.00 0.00 0.00 4.57
218 219 2.237893 TGTGTCTCATGGATCAGTGCAT 59.762 45.455 0.00 0.00 36.78 3.96
219 220 3.451902 TGTGTCTCATGGATCAGTGCATA 59.548 43.478 0.00 0.00 34.32 3.14
220 221 4.102054 TGTGTCTCATGGATCAGTGCATAT 59.898 41.667 0.00 0.00 34.32 1.78
221 222 5.305128 TGTGTCTCATGGATCAGTGCATATA 59.695 40.000 0.00 0.00 34.32 0.86
222 223 6.013984 TGTGTCTCATGGATCAGTGCATATAT 60.014 38.462 0.00 0.00 34.32 0.86
223 224 7.178983 TGTGTCTCATGGATCAGTGCATATATA 59.821 37.037 0.00 0.00 34.32 0.86
224 225 7.490725 GTGTCTCATGGATCAGTGCATATATAC 59.509 40.741 0.00 0.00 34.32 1.47
225 226 7.178983 TGTCTCATGGATCAGTGCATATATACA 59.821 37.037 0.00 0.00 34.32 2.29
226 227 7.490725 GTCTCATGGATCAGTGCATATATACAC 59.509 40.741 7.87 7.87 34.32 2.90
227 228 7.178983 TCTCATGGATCAGTGCATATATACACA 59.821 37.037 16.65 0.00 39.30 3.72
228 229 7.099120 TCATGGATCAGTGCATATATACACAC 58.901 38.462 16.65 10.61 39.30 3.82
229 230 5.793817 TGGATCAGTGCATATATACACACC 58.206 41.667 16.65 13.55 39.30 4.16
230 231 5.178797 GGATCAGTGCATATATACACACCC 58.821 45.833 16.65 8.78 39.30 4.61
231 232 5.046304 GGATCAGTGCATATATACACACCCT 60.046 44.000 16.65 0.82 39.30 4.34
232 233 5.887214 TCAGTGCATATATACACACCCTT 57.113 39.130 16.65 0.00 39.30 3.95
233 234 5.610398 TCAGTGCATATATACACACCCTTG 58.390 41.667 16.65 7.22 39.30 3.61
234 235 5.130311 TCAGTGCATATATACACACCCTTGT 59.870 40.000 16.65 0.00 39.30 3.16
235 236 5.822519 CAGTGCATATATACACACCCTTGTT 59.177 40.000 16.65 0.00 39.30 2.83
236 237 6.989759 CAGTGCATATATACACACCCTTGTTA 59.010 38.462 16.65 0.00 39.30 2.41
237 238 7.661437 CAGTGCATATATACACACCCTTGTTAT 59.339 37.037 16.65 0.00 39.30 1.89
245 246 9.793259 ATATACACACCCTTGTTATTAGATTGG 57.207 33.333 0.00 0.00 31.66 3.16
250 251 5.590259 CACCCTTGTTATTAGATTGGACCAG 59.410 44.000 0.00 0.00 0.00 4.00
252 253 6.058183 CCCTTGTTATTAGATTGGACCAGAG 58.942 44.000 0.00 0.00 0.00 3.35
260 261 6.935240 TTAGATTGGACCAGAGAGAAAAGA 57.065 37.500 0.00 0.00 0.00 2.52
262 263 4.224818 AGATTGGACCAGAGAGAAAAGAGG 59.775 45.833 0.00 0.00 0.00 3.69
271 272 6.502158 ACCAGAGAGAAAAGAGGAATAAAGGA 59.498 38.462 0.00 0.00 0.00 3.36
309 310 3.004419 GCACCCTCGTTTAAGAGCTTTTT 59.996 43.478 0.00 0.00 36.95 1.94
334 335 2.825861 AACGTGGTCGATTTGTAGGT 57.174 45.000 0.00 0.00 40.62 3.08
381 389 7.323895 CAGACGCTCATACATAAGTACATACAC 59.676 40.741 0.00 0.00 31.96 2.90
397 405 6.163135 ACATACACTCACTCCTATAAAGGC 57.837 41.667 0.00 0.00 43.31 4.35
400 408 3.119101 ACACTCACTCCTATAAAGGCACG 60.119 47.826 0.00 0.00 43.31 5.34
402 410 1.828595 TCACTCCTATAAAGGCACGCA 59.171 47.619 0.00 0.00 43.31 5.24
406 414 1.553248 TCCTATAAAGGCACGCACACT 59.447 47.619 0.00 0.00 43.31 3.55
407 415 1.933853 CCTATAAAGGCACGCACACTC 59.066 52.381 0.00 0.00 35.64 3.51
409 417 2.185004 ATAAAGGCACGCACACTCTT 57.815 45.000 0.00 0.00 0.00 2.85
410 418 1.508632 TAAAGGCACGCACACTCTTC 58.491 50.000 0.00 0.00 0.00 2.87
413 421 1.598130 GGCACGCACACTCTTCCTT 60.598 57.895 0.00 0.00 0.00 3.36
422 430 3.126000 GCACACTCTTCCTTTATGAGCAC 59.874 47.826 0.00 0.00 33.62 4.40
423 431 3.686726 CACACTCTTCCTTTATGAGCACC 59.313 47.826 0.00 0.00 33.62 5.01
426 434 4.081198 CACTCTTCCTTTATGAGCACCTCT 60.081 45.833 0.00 0.00 33.62 3.69
431 439 3.703556 TCCTTTATGAGCACCTCTGAGAG 59.296 47.826 6.17 1.57 0.00 3.20
433 441 4.441356 CCTTTATGAGCACCTCTGAGAGAC 60.441 50.000 11.82 0.00 0.00 3.36
435 443 1.543607 TGAGCACCTCTGAGAGACTG 58.456 55.000 11.82 6.88 0.00 3.51
439 447 1.838112 CACCTCTGAGAGACTGAGCT 58.162 55.000 11.82 0.00 41.28 4.09
450 458 3.514706 AGAGACTGAGCTGACACATCATT 59.485 43.478 0.00 0.00 33.22 2.57
453 461 5.798132 AGACTGAGCTGACACATCATTTTA 58.202 37.500 0.00 0.00 33.22 1.52
455 463 6.712095 AGACTGAGCTGACACATCATTTTAAA 59.288 34.615 0.00 0.00 33.22 1.52
456 464 7.229306 AGACTGAGCTGACACATCATTTTAAAA 59.771 33.333 2.51 2.51 33.22 1.52
459 467 9.844790 CTGAGCTGACACATCATTTTAAAATTA 57.155 29.630 10.77 4.00 33.22 1.40
479 487 3.559238 AATGAAGTCATCACAAACGCC 57.441 42.857 0.00 0.00 41.93 5.68
491 499 1.862827 ACAAACGCCTTTGTAGTCGAC 59.137 47.619 7.70 7.70 46.75 4.20
493 501 0.311790 AACGCCTTTGTAGTCGACGA 59.688 50.000 10.46 0.94 0.00 4.20
508 516 2.100603 CGAGAACGTCTCCTCCGC 59.899 66.667 8.73 0.00 40.34 5.54
516 524 1.519719 GTCTCCTCCGCTGAATGCT 59.480 57.895 0.00 0.00 40.11 3.79
522 530 1.829349 CTCCGCTGAATGCTCATCGC 61.829 60.000 0.00 0.00 39.34 4.58
524 532 0.598419 CCGCTGAATGCTCATCGCTA 60.598 55.000 0.00 0.00 39.34 4.26
525 533 1.211743 CGCTGAATGCTCATCGCTAA 58.788 50.000 0.00 0.00 34.74 3.09
534 542 1.064654 GCTCATCGCTAAAAAGCCTGG 59.935 52.381 0.00 0.00 35.14 4.45
542 550 5.890334 TCGCTAAAAAGCCTGGAATAAATG 58.110 37.500 0.00 0.00 0.00 2.32
545 553 5.521372 GCTAAAAAGCCTGGAATAAATGCAG 59.479 40.000 0.00 0.00 46.32 4.41
556 564 7.036996 TGGAATAAATGCAGAAATAATGCGA 57.963 32.000 0.00 0.00 46.87 5.10
576 584 5.038033 GCGAACACCAGTGTGAAATTTAAA 58.962 37.500 3.80 0.00 45.76 1.52
579 587 6.020201 CGAACACCAGTGTGAAATTTAAAACC 60.020 38.462 3.80 0.00 45.76 3.27
581 589 6.337356 ACACCAGTGTGAAATTTAAAACCTG 58.663 36.000 1.88 1.38 45.76 4.00
597 605 2.719739 ACCTGAAATCTGATGTGCTGG 58.280 47.619 0.00 0.64 0.00 4.85
601 609 2.242965 TGAAATCTGATGTGCTGGGGAT 59.757 45.455 0.00 0.00 0.00 3.85
602 610 3.459227 TGAAATCTGATGTGCTGGGGATA 59.541 43.478 0.00 0.00 0.00 2.59
622 630 2.188817 ACCACTGTCCTCCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
631 639 3.455910 TCCTCCTAACCATCCAATCACAG 59.544 47.826 0.00 0.00 0.00 3.66
632 640 3.434167 CCTCCTAACCATCCAATCACAGG 60.434 52.174 0.00 0.00 0.00 4.00
633 641 2.092429 TCCTAACCATCCAATCACAGGC 60.092 50.000 0.00 0.00 0.00 4.85
634 642 2.301346 CTAACCATCCAATCACAGGCC 58.699 52.381 0.00 0.00 0.00 5.19
635 643 0.680921 AACCATCCAATCACAGGCCG 60.681 55.000 0.00 0.00 0.00 6.13
636 644 1.825191 CCATCCAATCACAGGCCGG 60.825 63.158 0.00 0.00 0.00 6.13
640 648 2.398554 CCAATCACAGGCCGGTTCG 61.399 63.158 5.51 0.00 0.00 3.95
646 654 2.892425 CAGGCCGGTTCGCTGATC 60.892 66.667 1.90 0.00 0.00 2.92
675 683 6.461640 CGTAGGTAAATCCAAATAGGTAGGG 58.538 44.000 0.00 0.00 39.02 3.53
684 692 3.181443 CCAAATAGGTAGGGGGTAGCAAG 60.181 52.174 0.00 0.00 0.00 4.01
730 738 6.286240 AGGATTTCCCTTTTATTGCAAGAC 57.714 37.500 4.94 0.00 44.85 3.01
763 771 0.038251 CCCAAAAAGAAAGAGGCGGC 60.038 55.000 0.00 0.00 0.00 6.53
764 772 0.673437 CCAAAAAGAAAGAGGCGGCA 59.327 50.000 13.08 0.00 0.00 5.69
777 785 2.313172 GCGGCATGTATCGGCTCAG 61.313 63.158 0.00 0.00 0.00 3.35
784 792 3.001736 GCATGTATCGGCTCAGTTTCTTC 59.998 47.826 0.00 0.00 0.00 2.87
847 863 6.334202 ACCGAGATTTAATCAAGTCTCAGTC 58.666 40.000 7.74 0.00 43.96 3.51
850 866 7.009999 CCGAGATTTAATCAAGTCTCAGTCAAG 59.990 40.741 7.74 0.00 43.96 3.02
853 869 6.545504 TTTAATCAAGTCTCAGTCAAGTGC 57.454 37.500 0.00 0.00 0.00 4.40
861 878 6.286240 AGTCTCAGTCAAGTGCATAACATA 57.714 37.500 0.00 0.00 0.00 2.29
862 879 6.882656 AGTCTCAGTCAAGTGCATAACATAT 58.117 36.000 0.00 0.00 0.00 1.78
865 882 9.098355 GTCTCAGTCAAGTGCATAACATATAAA 57.902 33.333 0.00 0.00 0.00 1.40
896 913 6.488769 AAACCCTAAAAACCCCAAACTTAG 57.511 37.500 0.00 0.00 0.00 2.18
897 914 3.899360 ACCCTAAAAACCCCAAACTTAGC 59.101 43.478 0.00 0.00 0.00 3.09
898 915 4.157246 CCCTAAAAACCCCAAACTTAGCT 58.843 43.478 0.00 0.00 0.00 3.32
899 916 4.219944 CCCTAAAAACCCCAAACTTAGCTC 59.780 45.833 0.00 0.00 0.00 4.09
900 917 5.077564 CCTAAAAACCCCAAACTTAGCTCT 58.922 41.667 0.00 0.00 0.00 4.09
901 918 5.538813 CCTAAAAACCCCAAACTTAGCTCTT 59.461 40.000 0.00 0.00 0.00 2.85
902 919 5.531122 AAAAACCCCAAACTTAGCTCTTC 57.469 39.130 0.00 0.00 0.00 2.87
904 921 1.354705 ACCCCAAACTTAGCTCTTCCC 59.645 52.381 0.00 0.00 0.00 3.97
906 923 1.679032 CCCAAACTTAGCTCTTCCCCG 60.679 57.143 0.00 0.00 0.00 5.73
907 924 1.087501 CAAACTTAGCTCTTCCCCGC 58.912 55.000 0.00 0.00 0.00 6.13
908 925 0.035343 AAACTTAGCTCTTCCCCGCC 60.035 55.000 0.00 0.00 0.00 6.13
909 926 1.198759 AACTTAGCTCTTCCCCGCCA 61.199 55.000 0.00 0.00 0.00 5.69
910 927 1.198759 ACTTAGCTCTTCCCCGCCAA 61.199 55.000 0.00 0.00 0.00 4.52
912 929 0.402504 TTAGCTCTTCCCCGCCAAAA 59.597 50.000 0.00 0.00 0.00 2.44
913 930 0.402504 TAGCTCTTCCCCGCCAAAAA 59.597 50.000 0.00 0.00 0.00 1.94
929 1074 2.303163 AAAAACCCCGCAAACTTGAC 57.697 45.000 0.00 0.00 0.00 3.18
930 1075 1.187087 AAAACCCCGCAAACTTGACA 58.813 45.000 0.00 0.00 0.00 3.58
931 1076 0.458260 AAACCCCGCAAACTTGACAC 59.542 50.000 0.00 0.00 0.00 3.67
932 1077 1.388837 AACCCCGCAAACTTGACACC 61.389 55.000 0.00 0.00 0.00 4.16
933 1078 1.826054 CCCCGCAAACTTGACACCA 60.826 57.895 0.00 0.00 0.00 4.17
934 1079 1.654220 CCCGCAAACTTGACACCAG 59.346 57.895 0.00 0.00 0.00 4.00
935 1080 1.101049 CCCGCAAACTTGACACCAGT 61.101 55.000 0.00 0.00 0.00 4.00
936 1081 1.588674 CCGCAAACTTGACACCAGTA 58.411 50.000 0.00 0.00 0.00 2.74
937 1082 2.151202 CCGCAAACTTGACACCAGTAT 58.849 47.619 0.00 0.00 0.00 2.12
938 1083 3.331150 CCGCAAACTTGACACCAGTATA 58.669 45.455 0.00 0.00 0.00 1.47
939 1084 3.938963 CCGCAAACTTGACACCAGTATAT 59.061 43.478 0.00 0.00 0.00 0.86
940 1085 4.394920 CCGCAAACTTGACACCAGTATATT 59.605 41.667 0.00 0.00 0.00 1.28
941 1086 5.106317 CCGCAAACTTGACACCAGTATATTT 60.106 40.000 0.00 0.00 0.00 1.40
942 1087 6.378582 CGCAAACTTGACACCAGTATATTTT 58.621 36.000 0.00 0.00 0.00 1.82
943 1088 6.861055 CGCAAACTTGACACCAGTATATTTTT 59.139 34.615 0.00 0.00 0.00 1.94
987 1133 6.238374 CCAGTATAAAAAGTACCCAAGCGATG 60.238 42.308 0.00 0.00 0.00 3.84
1004 1156 7.010830 CCAAGCGATGGTATGTAATCATATCTG 59.989 40.741 3.62 0.00 44.85 2.90
1030 1186 1.032657 TCACTCCTAGGCGACAGAGC 61.033 60.000 5.58 0.00 0.00 4.09
1097 1253 2.269241 GCTTCCTTCCACCCTCGG 59.731 66.667 0.00 0.00 0.00 4.63
1129 1285 4.572571 TCCACGGTGGGCCAACAC 62.573 66.667 26.07 8.19 38.32 3.32
1350 1518 0.599204 GAGTCTCGCCAAACCGTCAA 60.599 55.000 0.00 0.00 0.00 3.18
1387 1556 2.179018 CAGGCCGCGACAAATTGG 59.821 61.111 8.23 0.00 0.00 3.16
1464 1633 0.390866 CATCACTCCTTGCTGACGCT 60.391 55.000 0.00 0.00 36.97 5.07
1479 1648 2.900273 GCTGCCACCTACATCGGA 59.100 61.111 0.00 0.00 0.00 4.55
1658 1845 2.186826 GTGTGACCACCACTGCCAC 61.187 63.158 0.00 0.00 45.86 5.01
1862 2078 5.181245 CGGCCGGATGATAATAAAACAGATT 59.819 40.000 20.10 0.00 0.00 2.40
1880 2096 2.973694 TTGAGTGGACGCCTATAACC 57.026 50.000 0.00 0.00 0.00 2.85
1881 2097 1.855295 TGAGTGGACGCCTATAACCA 58.145 50.000 0.00 0.00 0.00 3.67
1889 2105 1.134907 ACGCCTATAACCACGTTCCTG 60.135 52.381 0.00 0.00 34.62 3.86
1894 2110 4.272748 GCCTATAACCACGTTCCTGATTTC 59.727 45.833 0.00 0.00 0.00 2.17
1911 2127 6.417191 TGATTTCGTTTCCTGCTGTTATAC 57.583 37.500 0.00 0.00 0.00 1.47
1982 2198 6.039717 AGACTTTGTAACGTAGTCCAACTGTA 59.960 38.462 10.97 0.00 45.00 2.74
2028 2244 8.851145 CATTATATATACGTGAGATAGGCCACT 58.149 37.037 5.01 0.14 0.00 4.00
2114 2334 1.420138 CTAACCCACCTTCACCACAGT 59.580 52.381 0.00 0.00 0.00 3.55
2826 3097 1.215647 GCGTGGACGACTCTGGAAT 59.784 57.895 2.73 0.00 43.02 3.01
2882 3153 0.165511 CTCTTCGCAGCAAGCTTGAC 59.834 55.000 30.39 19.88 42.61 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 5.649782 AATGTCTCGGAAAATGCTCATTT 57.350 34.783 2.24 2.24 42.35 2.32
15 16 6.757897 TTTAATGTCTCGGAAAATGCTCAT 57.242 33.333 0.00 0.00 0.00 2.90
16 17 6.567687 TTTTAATGTCTCGGAAAATGCTCA 57.432 33.333 0.00 0.00 0.00 4.26
17 18 7.754924 TGATTTTTAATGTCTCGGAAAATGCTC 59.245 33.333 0.00 0.00 32.00 4.26
18 19 7.542130 GTGATTTTTAATGTCTCGGAAAATGCT 59.458 33.333 0.00 0.00 32.00 3.79
19 20 7.542130 AGTGATTTTTAATGTCTCGGAAAATGC 59.458 33.333 0.00 0.00 32.00 3.56
20 21 8.970691 AGTGATTTTTAATGTCTCGGAAAATG 57.029 30.769 0.00 0.00 32.00 2.32
21 22 9.981114 AAAGTGATTTTTAATGTCTCGGAAAAT 57.019 25.926 0.00 0.00 33.87 1.82
22 23 9.810545 AAAAGTGATTTTTAATGTCTCGGAAAA 57.189 25.926 0.00 0.00 37.22 2.29
23 24 9.810545 AAAAAGTGATTTTTAATGTCTCGGAAA 57.189 25.926 0.00 0.00 38.02 3.13
24 25 9.243637 CAAAAAGTGATTTTTAATGTCTCGGAA 57.756 29.630 0.00 0.00 39.20 4.30
25 26 7.865385 CCAAAAAGTGATTTTTAATGTCTCGGA 59.135 33.333 0.00 0.00 39.20 4.55
26 27 7.651704 ACCAAAAAGTGATTTTTAATGTCTCGG 59.348 33.333 0.00 0.00 39.20 4.63
27 28 8.479280 CACCAAAAAGTGATTTTTAATGTCTCG 58.521 33.333 0.00 0.00 39.20 4.04
28 29 9.313118 ACACCAAAAAGTGATTTTTAATGTCTC 57.687 29.630 0.00 0.00 39.20 3.36
29 30 9.313118 GACACCAAAAAGTGATTTTTAATGTCT 57.687 29.630 20.89 4.12 40.39 3.41
30 31 9.313118 AGACACCAAAAAGTGATTTTTAATGTC 57.687 29.630 20.76 20.76 41.80 3.06
31 32 9.313118 GAGACACCAAAAAGTGATTTTTAATGT 57.687 29.630 11.35 11.35 39.20 2.71
32 33 9.311916 TGAGACACCAAAAAGTGATTTTTAATG 57.688 29.630 0.00 3.78 39.20 1.90
33 34 9.883142 TTGAGACACCAAAAAGTGATTTTTAAT 57.117 25.926 0.00 0.00 39.20 1.40
34 35 9.364989 CTTGAGACACCAAAAAGTGATTTTTAA 57.635 29.630 0.00 0.00 39.20 1.52
35 36 8.527810 ACTTGAGACACCAAAAAGTGATTTTTA 58.472 29.630 0.00 0.00 39.20 1.52
36 37 7.386059 ACTTGAGACACCAAAAAGTGATTTTT 58.614 30.769 0.00 0.00 39.20 1.94
37 38 6.935167 ACTTGAGACACCAAAAAGTGATTTT 58.065 32.000 0.00 0.00 41.93 1.82
38 39 6.530019 ACTTGAGACACCAAAAAGTGATTT 57.470 33.333 0.00 0.00 40.34 2.17
39 40 6.530019 AACTTGAGACACCAAAAAGTGATT 57.470 33.333 0.00 0.00 40.34 2.57
40 41 6.530019 AAACTTGAGACACCAAAAAGTGAT 57.470 33.333 0.00 0.00 40.34 3.06
41 42 5.975693 AAACTTGAGACACCAAAAAGTGA 57.024 34.783 0.00 0.00 40.34 3.41
42 43 7.087639 TGTAAAACTTGAGACACCAAAAAGTG 58.912 34.615 0.00 0.00 43.65 3.16
43 44 7.222000 TGTAAAACTTGAGACACCAAAAAGT 57.778 32.000 0.00 0.00 32.60 2.66
44 45 7.973388 TGATGTAAAACTTGAGACACCAAAAAG 59.027 33.333 0.00 0.00 0.00 2.27
45 46 7.831753 TGATGTAAAACTTGAGACACCAAAAA 58.168 30.769 0.00 0.00 0.00 1.94
46 47 7.397892 TGATGTAAAACTTGAGACACCAAAA 57.602 32.000 0.00 0.00 0.00 2.44
47 48 7.397892 TTGATGTAAAACTTGAGACACCAAA 57.602 32.000 0.00 0.00 0.00 3.28
48 49 6.039270 CCTTGATGTAAAACTTGAGACACCAA 59.961 38.462 0.00 0.00 0.00 3.67
49 50 5.530915 CCTTGATGTAAAACTTGAGACACCA 59.469 40.000 0.00 0.00 0.00 4.17
50 51 5.763204 TCCTTGATGTAAAACTTGAGACACC 59.237 40.000 0.00 0.00 0.00 4.16
51 52 6.483640 AGTCCTTGATGTAAAACTTGAGACAC 59.516 38.462 0.00 0.00 0.00 3.67
52 53 6.591935 AGTCCTTGATGTAAAACTTGAGACA 58.408 36.000 0.00 0.00 0.00 3.41
53 54 7.497925 AAGTCCTTGATGTAAAACTTGAGAC 57.502 36.000 0.00 0.00 0.00 3.36
54 55 8.519799 AAAAGTCCTTGATGTAAAACTTGAGA 57.480 30.769 0.00 0.00 29.60 3.27
55 56 9.237846 GAAAAAGTCCTTGATGTAAAACTTGAG 57.762 33.333 0.00 0.00 29.60 3.02
56 57 8.966868 AGAAAAAGTCCTTGATGTAAAACTTGA 58.033 29.630 0.00 0.00 29.60 3.02
59 60 8.847196 GGTAGAAAAAGTCCTTGATGTAAAACT 58.153 33.333 0.00 0.00 0.00 2.66
60 61 8.080417 GGGTAGAAAAAGTCCTTGATGTAAAAC 58.920 37.037 0.00 0.00 0.00 2.43
61 62 8.002459 AGGGTAGAAAAAGTCCTTGATGTAAAA 58.998 33.333 0.00 0.00 0.00 1.52
62 63 7.523415 AGGGTAGAAAAAGTCCTTGATGTAAA 58.477 34.615 0.00 0.00 0.00 2.01
63 64 7.086685 AGGGTAGAAAAAGTCCTTGATGTAA 57.913 36.000 0.00 0.00 0.00 2.41
64 65 6.697641 AGGGTAGAAAAAGTCCTTGATGTA 57.302 37.500 0.00 0.00 0.00 2.29
65 66 5.584551 AGGGTAGAAAAAGTCCTTGATGT 57.415 39.130 0.00 0.00 0.00 3.06
66 67 9.853177 ATAATAGGGTAGAAAAAGTCCTTGATG 57.147 33.333 0.00 0.00 0.00 3.07
107 108 9.498176 CAACAACAACCTATAATAGGGTATACC 57.502 37.037 13.99 13.99 46.43 2.73
110 111 9.403583 CAACAACAACAACCTATAATAGGGTAT 57.596 33.333 0.00 0.00 46.43 2.73
111 112 8.604184 TCAACAACAACAACCTATAATAGGGTA 58.396 33.333 0.00 0.00 46.43 3.69
117 118 8.028938 GCATCTTCAACAACAACAACCTATAAT 58.971 33.333 0.00 0.00 0.00 1.28
118 119 7.230510 AGCATCTTCAACAACAACAACCTATAA 59.769 33.333 0.00 0.00 0.00 0.98
119 120 6.714810 AGCATCTTCAACAACAACAACCTATA 59.285 34.615 0.00 0.00 0.00 1.31
120 121 5.536161 AGCATCTTCAACAACAACAACCTAT 59.464 36.000 0.00 0.00 0.00 2.57
121 122 4.887071 AGCATCTTCAACAACAACAACCTA 59.113 37.500 0.00 0.00 0.00 3.08
122 123 3.701040 AGCATCTTCAACAACAACAACCT 59.299 39.130 0.00 0.00 0.00 3.50
123 124 4.044426 GAGCATCTTCAACAACAACAACC 58.956 43.478 0.00 0.00 0.00 3.77
132 133 8.675504 GTAGTACTACTTAGAGCATCTTCAACA 58.324 37.037 23.17 0.00 38.67 3.33
133 134 8.895737 AGTAGTACTACTTAGAGCATCTTCAAC 58.104 37.037 26.61 0.99 43.21 3.18
137 138 9.729281 GGATAGTAGTACTACTTAGAGCATCTT 57.271 37.037 34.30 13.10 43.21 2.40
138 139 9.108111 AGGATAGTAGTACTACTTAGAGCATCT 57.892 37.037 34.30 19.11 46.61 2.90
141 142 9.599056 TCTAGGATAGTAGTACTACTTAGAGCA 57.401 37.037 34.30 19.32 43.35 4.26
153 154 9.113838 CGTACAAACCTTTCTAGGATAGTAGTA 57.886 37.037 0.00 0.00 45.05 1.82
154 155 7.067981 CCGTACAAACCTTTCTAGGATAGTAGT 59.932 40.741 0.00 0.00 45.05 2.73
155 156 7.067981 ACCGTACAAACCTTTCTAGGATAGTAG 59.932 40.741 0.00 0.00 45.05 2.57
156 157 6.891908 ACCGTACAAACCTTTCTAGGATAGTA 59.108 38.462 0.00 0.00 45.05 1.82
157 158 5.718607 ACCGTACAAACCTTTCTAGGATAGT 59.281 40.000 0.00 0.00 45.05 2.12
158 159 6.218108 ACCGTACAAACCTTTCTAGGATAG 57.782 41.667 0.00 0.00 45.05 2.08
159 160 6.663093 TGTACCGTACAAACCTTTCTAGGATA 59.337 38.462 8.99 0.00 38.67 2.59
160 161 5.481473 TGTACCGTACAAACCTTTCTAGGAT 59.519 40.000 8.99 0.00 38.67 3.24
161 162 4.832266 TGTACCGTACAAACCTTTCTAGGA 59.168 41.667 8.99 0.00 38.67 2.94
162 163 5.138125 TGTACCGTACAAACCTTTCTAGG 57.862 43.478 8.99 0.00 40.68 3.02
163 164 5.636543 CCTTGTACCGTACAAACCTTTCTAG 59.363 44.000 21.53 9.17 46.90 2.43
164 165 5.540911 CCTTGTACCGTACAAACCTTTCTA 58.459 41.667 21.53 0.67 46.90 2.10
165 166 4.383173 CCTTGTACCGTACAAACCTTTCT 58.617 43.478 21.53 0.00 46.90 2.52
166 167 3.058708 GCCTTGTACCGTACAAACCTTTC 60.059 47.826 21.53 6.91 46.90 2.62
167 168 2.880268 GCCTTGTACCGTACAAACCTTT 59.120 45.455 21.53 0.00 46.90 3.11
168 169 2.105306 AGCCTTGTACCGTACAAACCTT 59.895 45.455 21.53 8.08 46.90 3.50
169 170 1.695788 AGCCTTGTACCGTACAAACCT 59.304 47.619 21.53 17.21 46.90 3.50
170 171 2.174363 AGCCTTGTACCGTACAAACC 57.826 50.000 21.53 15.64 46.90 3.27
171 172 2.874086 ACAAGCCTTGTACCGTACAAAC 59.126 45.455 21.53 16.88 46.90 2.93
172 173 3.196939 ACAAGCCTTGTACCGTACAAA 57.803 42.857 21.53 8.78 46.90 2.83
173 174 2.914695 ACAAGCCTTGTACCGTACAA 57.085 45.000 20.35 20.35 45.66 2.41
174 175 2.914695 AACAAGCCTTGTACCGTACA 57.085 45.000 11.10 7.32 44.59 2.90
175 176 2.669924 GCTAACAAGCCTTGTACCGTAC 59.330 50.000 11.10 1.40 44.59 3.67
176 177 2.564062 AGCTAACAAGCCTTGTACCGTA 59.436 45.455 11.10 0.00 44.59 4.02
177 178 1.346722 AGCTAACAAGCCTTGTACCGT 59.653 47.619 11.10 0.00 44.59 4.83
178 179 1.732259 CAGCTAACAAGCCTTGTACCG 59.268 52.381 11.10 3.62 44.59 4.02
179 180 2.484264 CACAGCTAACAAGCCTTGTACC 59.516 50.000 11.10 2.43 44.59 3.34
180 181 3.139077 ACACAGCTAACAAGCCTTGTAC 58.861 45.455 11.10 3.88 44.59 2.90
181 182 3.071023 AGACACAGCTAACAAGCCTTGTA 59.929 43.478 11.10 0.00 44.59 2.41
183 184 2.481952 GAGACACAGCTAACAAGCCTTG 59.518 50.000 2.11 2.11 34.90 3.61
184 185 2.104792 TGAGACACAGCTAACAAGCCTT 59.895 45.455 0.00 0.00 34.90 4.35
185 186 1.694150 TGAGACACAGCTAACAAGCCT 59.306 47.619 0.00 0.00 34.90 4.58
186 187 2.169832 TGAGACACAGCTAACAAGCC 57.830 50.000 0.00 0.00 34.90 4.35
187 188 2.417933 CCATGAGACACAGCTAACAAGC 59.582 50.000 0.00 0.00 0.00 4.01
188 189 3.930336 TCCATGAGACACAGCTAACAAG 58.070 45.455 0.00 0.00 0.00 3.16
189 190 4.020307 TGATCCATGAGACACAGCTAACAA 60.020 41.667 0.00 0.00 0.00 2.83
190 191 3.515104 TGATCCATGAGACACAGCTAACA 59.485 43.478 0.00 0.00 0.00 2.41
191 192 4.118410 CTGATCCATGAGACACAGCTAAC 58.882 47.826 0.00 0.00 0.00 2.34
192 193 3.771479 ACTGATCCATGAGACACAGCTAA 59.229 43.478 0.00 0.00 36.37 3.09
193 194 3.131755 CACTGATCCATGAGACACAGCTA 59.868 47.826 0.00 0.00 36.37 3.32
194 195 2.093606 CACTGATCCATGAGACACAGCT 60.094 50.000 0.00 0.00 36.37 4.24
195 196 2.277969 CACTGATCCATGAGACACAGC 58.722 52.381 0.00 0.00 36.37 4.40
196 197 2.277969 GCACTGATCCATGAGACACAG 58.722 52.381 0.00 6.50 37.88 3.66
197 198 1.624813 TGCACTGATCCATGAGACACA 59.375 47.619 0.00 0.00 0.00 3.72
198 199 2.391616 TGCACTGATCCATGAGACAC 57.608 50.000 0.00 0.00 0.00 3.67
199 200 4.968971 ATATGCACTGATCCATGAGACA 57.031 40.909 0.00 0.00 0.00 3.41
200 201 7.490725 GTGTATATATGCACTGATCCATGAGAC 59.509 40.741 22.35 0.00 39.79 3.36
201 202 7.178983 TGTGTATATATGCACTGATCCATGAGA 59.821 37.037 27.35 6.76 42.76 3.27
202 203 7.277319 GTGTGTATATATGCACTGATCCATGAG 59.723 40.741 27.35 0.00 42.76 2.90
203 204 7.099120 GTGTGTATATATGCACTGATCCATGA 58.901 38.462 27.35 7.79 42.76 3.07
204 205 6.314648 GGTGTGTATATATGCACTGATCCATG 59.685 42.308 27.35 0.00 42.76 3.66
205 206 6.409704 GGTGTGTATATATGCACTGATCCAT 58.590 40.000 27.35 0.00 42.76 3.41
206 207 5.279960 GGGTGTGTATATATGCACTGATCCA 60.280 44.000 27.35 9.66 42.76 3.41
207 208 5.046304 AGGGTGTGTATATATGCACTGATCC 60.046 44.000 27.35 20.02 42.76 3.36
208 209 6.042638 AGGGTGTGTATATATGCACTGATC 57.957 41.667 27.35 13.51 42.76 2.92
209 210 6.183361 ACAAGGGTGTGTATATATGCACTGAT 60.183 38.462 27.35 13.00 42.76 2.90
210 211 5.130311 ACAAGGGTGTGTATATATGCACTGA 59.870 40.000 27.35 11.45 42.76 3.41
211 212 5.368145 ACAAGGGTGTGTATATATGCACTG 58.632 41.667 27.35 20.60 42.76 3.66
212 213 5.630415 ACAAGGGTGTGTATATATGCACT 57.370 39.130 27.35 10.54 42.76 4.40
213 214 7.979444 ATAACAAGGGTGTGTATATATGCAC 57.021 36.000 22.72 22.72 42.66 4.57
214 215 9.719355 CTAATAACAAGGGTGTGTATATATGCA 57.281 33.333 0.00 0.00 38.27 3.96
215 216 9.938280 TCTAATAACAAGGGTGTGTATATATGC 57.062 33.333 0.00 0.00 38.27 3.14
219 220 9.793259 CCAATCTAATAACAAGGGTGTGTATAT 57.207 33.333 0.00 0.00 38.27 0.86
220 221 8.994500 TCCAATCTAATAACAAGGGTGTGTATA 58.006 33.333 0.00 0.00 38.27 1.47
221 222 7.773690 GTCCAATCTAATAACAAGGGTGTGTAT 59.226 37.037 0.00 0.00 38.27 2.29
222 223 7.107542 GTCCAATCTAATAACAAGGGTGTGTA 58.892 38.462 0.00 0.00 38.27 2.90
223 224 5.944007 GTCCAATCTAATAACAAGGGTGTGT 59.056 40.000 0.00 0.00 38.27 3.72
224 225 5.357032 GGTCCAATCTAATAACAAGGGTGTG 59.643 44.000 0.00 0.00 38.27 3.82
225 226 5.014755 TGGTCCAATCTAATAACAAGGGTGT 59.985 40.000 0.00 0.00 40.75 4.16
226 227 5.505780 TGGTCCAATCTAATAACAAGGGTG 58.494 41.667 0.00 0.00 0.00 4.61
227 228 5.491078 TCTGGTCCAATCTAATAACAAGGGT 59.509 40.000 0.00 0.00 0.00 4.34
228 229 6.001449 TCTGGTCCAATCTAATAACAAGGG 57.999 41.667 0.00 0.00 0.00 3.95
229 230 6.889198 TCTCTGGTCCAATCTAATAACAAGG 58.111 40.000 0.00 0.00 0.00 3.61
230 231 7.786030 TCTCTCTGGTCCAATCTAATAACAAG 58.214 38.462 0.00 0.00 0.00 3.16
231 232 7.733773 TCTCTCTGGTCCAATCTAATAACAA 57.266 36.000 0.00 0.00 0.00 2.83
232 233 7.733773 TTCTCTCTGGTCCAATCTAATAACA 57.266 36.000 0.00 0.00 0.00 2.41
233 234 9.103861 CTTTTCTCTCTGGTCCAATCTAATAAC 57.896 37.037 0.00 0.00 0.00 1.89
234 235 9.046846 TCTTTTCTCTCTGGTCCAATCTAATAA 57.953 33.333 0.00 0.00 0.00 1.40
235 236 8.609617 TCTTTTCTCTCTGGTCCAATCTAATA 57.390 34.615 0.00 0.00 0.00 0.98
236 237 7.365473 CCTCTTTTCTCTCTGGTCCAATCTAAT 60.365 40.741 0.00 0.00 0.00 1.73
237 238 6.070538 CCTCTTTTCTCTCTGGTCCAATCTAA 60.071 42.308 0.00 0.00 0.00 2.10
245 246 6.821160 CCTTTATTCCTCTTTTCTCTCTGGTC 59.179 42.308 0.00 0.00 0.00 4.02
277 278 1.519408 ACGAGGGTGCACATTACAAC 58.481 50.000 20.43 0.00 0.00 3.32
278 279 2.264005 AACGAGGGTGCACATTACAA 57.736 45.000 20.43 0.00 0.00 2.41
288 289 4.830826 AAAAAGCTCTTAAACGAGGGTG 57.169 40.909 0.00 0.00 0.00 4.61
309 310 1.722464 CAAATCGACCACGTTAGCGAA 59.278 47.619 5.81 0.00 42.00 4.70
310 311 1.336148 ACAAATCGACCACGTTAGCGA 60.336 47.619 5.81 5.96 42.00 4.93
311 312 1.065358 ACAAATCGACCACGTTAGCG 58.935 50.000 0.00 0.00 44.93 4.26
314 315 3.940209 ACCTACAAATCGACCACGTTA 57.060 42.857 0.00 0.00 40.69 3.18
354 355 4.607955 TGTACTTATGTATGAGCGTCTGC 58.392 43.478 0.00 0.00 43.24 4.26
355 356 7.323895 GTGTATGTACTTATGTATGAGCGTCTG 59.676 40.741 0.00 0.00 0.00 3.51
359 367 7.323895 GTGAGTGTATGTACTTATGTATGAGCG 59.676 40.741 0.00 0.00 0.00 5.03
371 379 7.014422 GCCTTTATAGGAGTGAGTGTATGTACT 59.986 40.741 3.01 0.00 45.05 2.73
381 389 2.159099 TGCGTGCCTTTATAGGAGTGAG 60.159 50.000 3.01 0.00 45.05 3.51
392 400 1.166531 GGAAGAGTGTGCGTGCCTTT 61.167 55.000 0.00 0.00 0.00 3.11
395 403 1.166531 AAAGGAAGAGTGTGCGTGCC 61.167 55.000 0.00 0.00 0.00 5.01
397 405 3.325870 TCATAAAGGAAGAGTGTGCGTG 58.674 45.455 0.00 0.00 0.00 5.34
400 408 3.126000 GTGCTCATAAAGGAAGAGTGTGC 59.874 47.826 0.00 0.00 0.00 4.57
402 410 3.584848 AGGTGCTCATAAAGGAAGAGTGT 59.415 43.478 0.00 0.00 0.00 3.55
406 414 4.096681 TCAGAGGTGCTCATAAAGGAAGA 58.903 43.478 0.00 0.00 32.06 2.87
407 415 4.161189 TCTCAGAGGTGCTCATAAAGGAAG 59.839 45.833 0.00 0.00 32.06 3.46
409 417 3.703556 CTCTCAGAGGTGCTCATAAAGGA 59.296 47.826 0.00 0.00 32.06 3.36
410 418 3.703556 TCTCTCAGAGGTGCTCATAAAGG 59.296 47.826 0.57 0.00 32.06 3.11
413 421 3.698539 CAGTCTCTCAGAGGTGCTCATAA 59.301 47.826 0.57 0.00 32.06 1.90
422 430 1.745087 GTCAGCTCAGTCTCTCAGAGG 59.255 57.143 0.57 0.00 31.57 3.69
423 431 2.162208 GTGTCAGCTCAGTCTCTCAGAG 59.838 54.545 0.00 0.00 33.62 3.35
426 434 1.986882 TGTGTCAGCTCAGTCTCTCA 58.013 50.000 0.00 0.00 0.00 3.27
431 439 6.486253 TTAAAATGATGTGTCAGCTCAGTC 57.514 37.500 0.00 0.00 37.87 3.51
433 441 8.752766 AATTTTAAAATGATGTGTCAGCTCAG 57.247 30.769 14.04 0.00 37.87 3.35
453 461 7.116233 GGCGTTTGTGATGACTTCATTAATTTT 59.884 33.333 0.00 0.00 36.54 1.82
455 463 6.071952 AGGCGTTTGTGATGACTTCATTAATT 60.072 34.615 0.00 0.00 36.54 1.40
456 464 5.415701 AGGCGTTTGTGATGACTTCATTAAT 59.584 36.000 0.00 0.00 36.54 1.40
459 467 3.149196 AGGCGTTTGTGATGACTTCATT 58.851 40.909 0.00 0.00 36.54 2.57
461 469 2.254546 AGGCGTTTGTGATGACTTCA 57.745 45.000 0.00 0.00 0.00 3.02
491 499 2.100603 GCGGAGGAGACGTTCTCG 59.899 66.667 0.00 0.00 44.28 4.04
493 501 0.894184 TTCAGCGGAGGAGACGTTCT 60.894 55.000 0.00 0.00 0.00 3.01
516 524 2.779755 TCCAGGCTTTTTAGCGATGA 57.220 45.000 0.00 0.00 35.24 2.92
522 530 6.866480 TCTGCATTTATTCCAGGCTTTTTAG 58.134 36.000 0.00 0.00 0.00 1.85
524 532 5.743636 TCTGCATTTATTCCAGGCTTTTT 57.256 34.783 0.00 0.00 0.00 1.94
525 533 5.743636 TTCTGCATTTATTCCAGGCTTTT 57.256 34.783 0.00 0.00 0.00 2.27
534 542 8.261908 GTGTTCGCATTATTTCTGCATTTATTC 58.738 33.333 0.00 0.00 39.64 1.75
542 550 3.119849 ACTGGTGTTCGCATTATTTCTGC 60.120 43.478 0.00 0.00 36.26 4.26
545 553 4.083537 TCACACTGGTGTTCGCATTATTTC 60.084 41.667 3.41 0.00 45.45 2.17
546 554 3.818210 TCACACTGGTGTTCGCATTATTT 59.182 39.130 3.41 0.00 45.45 1.40
554 562 6.020201 GGTTTTAAATTTCACACTGGTGTTCG 60.020 38.462 3.41 0.00 45.45 3.95
556 564 6.816140 CAGGTTTTAAATTTCACACTGGTGTT 59.184 34.615 3.41 0.00 45.45 3.32
576 584 3.087031 CCAGCACATCAGATTTCAGGTT 58.913 45.455 0.00 0.00 0.00 3.50
579 587 2.022195 CCCCAGCACATCAGATTTCAG 58.978 52.381 0.00 0.00 0.00 3.02
581 589 2.425143 TCCCCAGCACATCAGATTTC 57.575 50.000 0.00 0.00 0.00 2.17
592 600 1.271840 GGACAGTGGTATCCCCAGCA 61.272 60.000 0.00 0.00 46.45 4.41
597 605 2.699321 GTTAGGAGGACAGTGGTATCCC 59.301 54.545 0.00 0.00 34.82 3.85
601 609 3.371965 GATGGTTAGGAGGACAGTGGTA 58.628 50.000 0.00 0.00 0.00 3.25
602 610 2.188817 GATGGTTAGGAGGACAGTGGT 58.811 52.381 0.00 0.00 0.00 4.16
604 612 2.187958 TGGATGGTTAGGAGGACAGTG 58.812 52.381 0.00 0.00 0.00 3.66
606 614 3.455910 TGATTGGATGGTTAGGAGGACAG 59.544 47.826 0.00 0.00 0.00 3.51
607 615 3.199946 GTGATTGGATGGTTAGGAGGACA 59.800 47.826 0.00 0.00 0.00 4.02
608 616 3.199946 TGTGATTGGATGGTTAGGAGGAC 59.800 47.826 0.00 0.00 0.00 3.85
609 617 3.455910 CTGTGATTGGATGGTTAGGAGGA 59.544 47.826 0.00 0.00 0.00 3.71
622 630 2.398554 CGAACCGGCCTGTGATTGG 61.399 63.158 0.00 0.00 0.00 3.16
646 654 2.589798 TTGGATTTACCTACGGCTCG 57.410 50.000 0.00 0.00 39.86 5.03
649 657 4.711399 ACCTATTTGGATTTACCTACGGC 58.289 43.478 0.00 0.00 39.71 5.68
658 666 4.105858 GCTACCCCCTACCTATTTGGATTT 59.894 45.833 0.00 0.00 39.71 2.17
660 668 3.257578 GCTACCCCCTACCTATTTGGAT 58.742 50.000 0.00 0.00 39.71 3.41
664 672 3.974642 CTCTTGCTACCCCCTACCTATTT 59.025 47.826 0.00 0.00 0.00 1.40
665 673 3.588569 CTCTTGCTACCCCCTACCTATT 58.411 50.000 0.00 0.00 0.00 1.73
669 677 1.697082 GCCTCTTGCTACCCCCTACC 61.697 65.000 0.00 0.00 36.87 3.18
670 678 0.981277 TGCCTCTTGCTACCCCCTAC 60.981 60.000 0.00 0.00 42.00 3.18
674 682 0.464554 GTGATGCCTCTTGCTACCCC 60.465 60.000 0.00 0.00 42.00 4.95
675 683 0.253044 TGTGATGCCTCTTGCTACCC 59.747 55.000 0.00 0.00 42.00 3.69
684 692 4.152625 GCGCGTGTGTGATGCCTC 62.153 66.667 8.43 0.00 32.28 4.70
726 734 3.087370 GGGAATAGCAACCCAAGTCTT 57.913 47.619 0.00 0.00 44.96 3.01
763 771 4.183865 TGAAGAAACTGAGCCGATACATG 58.816 43.478 0.00 0.00 0.00 3.21
764 772 4.471904 TGAAGAAACTGAGCCGATACAT 57.528 40.909 0.00 0.00 0.00 2.29
808 816 0.322648 TCGGTCGACTCCTAGTCACA 59.677 55.000 16.46 0.00 45.30 3.58
812 820 2.713863 AATCTCGGTCGACTCCTAGT 57.286 50.000 16.46 0.00 0.00 2.57
825 837 7.543868 ACTTGACTGAGACTTGATTAAATCTCG 59.456 37.037 4.51 2.72 40.45 4.04
828 840 7.095060 TGCACTTGACTGAGACTTGATTAAATC 60.095 37.037 0.00 0.00 0.00 2.17
875 892 3.899360 GCTAAGTTTGGGGTTTTTAGGGT 59.101 43.478 0.00 0.00 0.00 4.34
876 893 4.157246 AGCTAAGTTTGGGGTTTTTAGGG 58.843 43.478 0.00 0.00 0.00 3.53
877 894 5.077564 AGAGCTAAGTTTGGGGTTTTTAGG 58.922 41.667 0.00 0.00 0.00 2.69
878 895 6.294564 GGAAGAGCTAAGTTTGGGGTTTTTAG 60.295 42.308 0.00 0.00 0.00 1.85
879 896 5.537295 GGAAGAGCTAAGTTTGGGGTTTTTA 59.463 40.000 0.00 0.00 0.00 1.52
880 897 4.344102 GGAAGAGCTAAGTTTGGGGTTTTT 59.656 41.667 0.00 0.00 0.00 1.94
881 898 3.895656 GGAAGAGCTAAGTTTGGGGTTTT 59.104 43.478 0.00 0.00 0.00 2.43
882 899 3.497332 GGAAGAGCTAAGTTTGGGGTTT 58.503 45.455 0.00 0.00 0.00 3.27
883 900 2.225041 GGGAAGAGCTAAGTTTGGGGTT 60.225 50.000 0.00 0.00 0.00 4.11
884 901 1.354705 GGGAAGAGCTAAGTTTGGGGT 59.645 52.381 0.00 0.00 0.00 4.95
885 902 1.341089 GGGGAAGAGCTAAGTTTGGGG 60.341 57.143 0.00 0.00 0.00 4.96
886 903 1.679032 CGGGGAAGAGCTAAGTTTGGG 60.679 57.143 0.00 0.00 0.00 4.12
888 905 1.087501 GCGGGGAAGAGCTAAGTTTG 58.912 55.000 0.00 0.00 0.00 2.93
889 906 0.035343 GGCGGGGAAGAGCTAAGTTT 60.035 55.000 0.00 0.00 0.00 2.66
891 908 1.198759 TTGGCGGGGAAGAGCTAAGT 61.199 55.000 0.00 0.00 30.50 2.24
896 913 3.771978 TTTTTGGCGGGGAAGAGC 58.228 55.556 0.00 0.00 0.00 4.09
910 927 1.550976 TGTCAAGTTTGCGGGGTTTTT 59.449 42.857 0.00 0.00 0.00 1.94
912 929 0.458260 GTGTCAAGTTTGCGGGGTTT 59.542 50.000 0.00 0.00 0.00 3.27
913 930 1.388837 GGTGTCAAGTTTGCGGGGTT 61.389 55.000 0.00 0.00 0.00 4.11
914 931 1.826487 GGTGTCAAGTTTGCGGGGT 60.826 57.895 0.00 0.00 0.00 4.95
915 932 1.795170 CTGGTGTCAAGTTTGCGGGG 61.795 60.000 0.00 0.00 0.00 5.73
916 933 1.101049 ACTGGTGTCAAGTTTGCGGG 61.101 55.000 0.00 0.00 0.00 6.13
942 1087 4.287552 TGGTGCCAAGTTACCCTTAAAAA 58.712 39.130 0.00 0.00 36.10 1.94
943 1088 3.892588 CTGGTGCCAAGTTACCCTTAAAA 59.107 43.478 0.00 0.00 36.10 1.52
944 1089 3.117436 ACTGGTGCCAAGTTACCCTTAAA 60.117 43.478 0.00 0.00 36.10 1.52
945 1090 2.444010 ACTGGTGCCAAGTTACCCTTAA 59.556 45.455 0.00 0.00 36.10 1.85
946 1091 2.059490 ACTGGTGCCAAGTTACCCTTA 58.941 47.619 0.00 0.00 36.10 2.69
947 1092 0.850784 ACTGGTGCCAAGTTACCCTT 59.149 50.000 0.00 0.00 36.10 3.95
948 1093 1.737199 TACTGGTGCCAAGTTACCCT 58.263 50.000 0.00 0.00 36.10 4.34
949 1094 2.801077 ATACTGGTGCCAAGTTACCC 57.199 50.000 0.00 0.00 36.10 3.69
950 1095 6.208007 ACTTTTTATACTGGTGCCAAGTTACC 59.792 38.462 0.00 0.00 37.48 2.85
951 1096 7.210718 ACTTTTTATACTGGTGCCAAGTTAC 57.789 36.000 0.00 0.00 0.00 2.50
952 1097 7.391275 GGTACTTTTTATACTGGTGCCAAGTTA 59.609 37.037 0.00 0.00 33.87 2.24
953 1098 6.208007 GGTACTTTTTATACTGGTGCCAAGTT 59.792 38.462 0.00 0.00 33.87 2.66
954 1099 5.708697 GGTACTTTTTATACTGGTGCCAAGT 59.291 40.000 0.00 0.00 33.87 3.16
955 1100 5.124936 GGGTACTTTTTATACTGGTGCCAAG 59.875 44.000 0.00 0.00 35.03 3.61
956 1101 5.011586 GGGTACTTTTTATACTGGTGCCAA 58.988 41.667 0.00 0.00 35.03 4.52
987 1133 7.657354 TGACAAGCACAGATATGATTACATACC 59.343 37.037 0.00 0.00 41.03 2.73
988 1134 8.491152 GTGACAAGCACAGATATGATTACATAC 58.509 37.037 0.00 0.00 46.91 2.39
1030 1186 1.730902 CGGCACCTCGATATCGCTG 60.731 63.158 20.34 14.94 39.60 5.18
1097 1253 0.744771 GTGGAGAATTGGGAGGACGC 60.745 60.000 0.00 0.00 0.00 5.19
1129 1285 3.103911 GGCACGAACTCGACCACG 61.104 66.667 6.05 0.00 43.02 4.94
1133 1289 2.432628 CAGGGGCACGAACTCGAC 60.433 66.667 6.05 0.00 43.02 4.20
1231 1390 3.984186 CTCAGGGCTCCGGGGAAGA 62.984 68.421 4.80 0.00 0.00 2.87
1384 1553 0.600518 TCGCAAAATCGACGGTCCAA 60.601 50.000 1.91 0.00 33.02 3.53
1464 1633 1.676678 GCTCTCCGATGTAGGTGGCA 61.677 60.000 0.00 0.00 0.00 4.92
1567 1736 0.183492 TGCAGGAACTTGGAAGCTGT 59.817 50.000 0.00 0.00 34.60 4.40
1856 2072 1.557099 TAGGCGTCCACTCAATCTGT 58.443 50.000 0.00 0.00 0.00 3.41
1862 2078 1.479323 GTGGTTATAGGCGTCCACTCA 59.521 52.381 7.54 0.00 44.57 3.41
1880 2096 2.806244 AGGAAACGAAATCAGGAACGTG 59.194 45.455 0.00 0.00 38.92 4.49
1881 2097 2.806244 CAGGAAACGAAATCAGGAACGT 59.194 45.455 0.00 0.00 40.64 3.99
1889 2105 6.417191 TGTATAACAGCAGGAAACGAAATC 57.583 37.500 0.00 0.00 0.00 2.17
1894 2110 6.478673 TCATGTATGTATAACAGCAGGAAACG 59.521 38.462 0.00 0.00 29.65 3.60
1943 2159 7.459348 CGTTACAAAGTCTAACAATCGTCTACG 60.459 40.741 0.00 0.00 41.45 3.51
2028 2244 1.742308 ACTGGCTCAACCCTTTAGGA 58.258 50.000 0.00 0.00 39.89 2.94
2033 2249 1.360393 TGGGAACTGGCTCAACCCTT 61.360 55.000 0.00 0.00 40.98 3.95
2700 2971 2.913578 TACCCACAGACGGTGCGT 60.914 61.111 0.00 0.71 46.50 5.24
2826 3097 0.392461 GAGGTCTGGGCAAACGCATA 60.392 55.000 0.00 0.00 38.19 3.14
2882 3153 4.256920 AGGAATCCAGTTTCTTGACATCG 58.743 43.478 0.61 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.