Multiple sequence alignment - TraesCS1B01G387600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G387600 chr1B 100.000 3386 0 0 1 3386 621951186 621954571 0.000000e+00 6253
1 TraesCS1B01G387600 chr1D 94.237 1718 70 10 1065 2780 451952940 451954630 0.000000e+00 2597
2 TraesCS1B01G387600 chr1D 85.225 1022 82 28 1 992 451950371 451951353 0.000000e+00 987
3 TraesCS1B01G387600 chr1D 93.142 627 32 5 2768 3386 451954703 451955326 0.000000e+00 909
4 TraesCS1B01G387600 chr1A 93.150 1708 65 18 1072 2779 546512117 546513772 0.000000e+00 2459
5 TraesCS1B01G387600 chr1A 87.781 622 71 3 29 650 546510749 546511365 0.000000e+00 723
6 TraesCS1B01G387600 chr1A 96.073 331 12 1 2768 3097 546513843 546514173 3.840000e-149 538
7 TraesCS1B01G387600 chr1A 94.444 288 15 1 3099 3386 546514208 546514494 3.100000e-120 442
8 TraesCS1B01G387600 chr1A 87.437 199 24 1 647 844 546511729 546511927 9.450000e-56 228
9 TraesCS1B01G387600 chr6A 84.615 117 15 3 2911 3027 556975499 556975386 2.760000e-21 113
10 TraesCS1B01G387600 chr6B 82.906 117 17 3 2911 3027 620180758 620180645 5.980000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G387600 chr1B 621951186 621954571 3385 False 6253.000000 6253 100.000 1 3386 1 chr1B.!!$F1 3385
1 TraesCS1B01G387600 chr1D 451950371 451955326 4955 False 1497.666667 2597 90.868 1 3386 3 chr1D.!!$F1 3385
2 TraesCS1B01G387600 chr1A 546510749 546514494 3745 False 878.000000 2459 91.777 29 3386 5 chr1A.!!$F1 3357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 1254 0.107214 GGGCAAGGTCGGATGAATGA 60.107 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2426 4349 0.250553 CCCCTAAGGTGACAAACGCA 60.251 55.0 0.0 0.0 0.0 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.268899 ACAACGCGTGCTAGAACTAGT 59.731 47.619 14.98 0.00 35.65 2.57
23 24 2.485426 ACAACGCGTGCTAGAACTAGTA 59.515 45.455 14.98 3.51 35.65 1.82
24 25 3.128242 ACAACGCGTGCTAGAACTAGTAT 59.872 43.478 14.98 0.00 35.65 2.12
33 34 7.078851 CGTGCTAGAACTAGTATCAGTAATGG 58.921 42.308 0.00 0.00 35.65 3.16
95 96 5.276820 GCAATGCTAGAACCAACAACAAAAC 60.277 40.000 0.00 0.00 0.00 2.43
238 239 1.525995 CAACCCTGCTGTTGACGGT 60.526 57.895 8.13 0.00 46.77 4.83
248 249 1.603802 CTGTTGACGGTGAACTGCAAT 59.396 47.619 11.61 0.00 0.00 3.56
273 274 2.351276 GTGCCGGAACCATGGTCT 59.649 61.111 20.07 8.64 0.00 3.85
370 371 1.760029 TGGAACAGGATATGCGCTGTA 59.240 47.619 9.73 1.70 30.86 2.74
371 372 2.368548 TGGAACAGGATATGCGCTGTAT 59.631 45.455 9.73 7.31 30.86 2.29
373 374 3.815401 GGAACAGGATATGCGCTGTATTT 59.185 43.478 9.73 0.00 30.86 1.40
400 401 1.495951 GATGTTGCGACCGTTGTCC 59.504 57.895 0.45 0.00 38.32 4.02
421 422 0.462047 GAGATGCCGGAACCGAACAT 60.462 55.000 15.07 16.17 42.83 2.71
445 446 4.452733 AGCTCTAACCGGCCACGC 62.453 66.667 0.00 0.00 39.22 5.34
477 478 2.401766 CCAACAGCGGCCTTGCTAG 61.402 63.158 4.69 3.22 45.23 3.42
478 479 1.672356 CAACAGCGGCCTTGCTAGT 60.672 57.895 4.69 3.80 45.23 2.57
564 565 0.541998 ATACCGAGGGATGATCGCCA 60.542 55.000 5.83 0.00 38.84 5.69
703 1071 2.967397 CAAGGGTGCTACGACCGA 59.033 61.111 0.00 0.00 36.80 4.69
708 1076 4.748679 GTGCTACGACCGACGCGT 62.749 66.667 13.85 13.85 46.94 6.01
732 1101 0.387565 GAAGCCCTCGAGATGTCTCC 59.612 60.000 15.71 0.00 39.79 3.71
733 1102 1.388065 AAGCCCTCGAGATGTCTCCG 61.388 60.000 15.71 0.00 39.79 4.63
757 1127 4.096003 CTTCGATGGGGCGGTGGT 62.096 66.667 0.00 0.00 0.00 4.16
832 1212 1.677300 ATCGCAACGATTTGGGGCA 60.677 52.632 0.00 0.00 44.59 5.36
847 1254 0.107214 GGGCAAGGTCGGATGAATGA 60.107 55.000 0.00 0.00 0.00 2.57
852 1259 3.938963 GCAAGGTCGGATGAATGAAGTTA 59.061 43.478 0.00 0.00 0.00 2.24
881 1288 2.426023 GAGCACGTGGTGGAAGGT 59.574 61.111 27.15 0.00 33.64 3.50
886 1293 0.531090 CACGTGGTGGAAGGTCGAAA 60.531 55.000 7.95 0.00 0.00 3.46
888 1295 1.301423 CGTGGTGGAAGGTCGAAAAA 58.699 50.000 0.00 0.00 0.00 1.94
927 1334 3.186047 GTTCCATCGTGCGTCCGG 61.186 66.667 0.00 0.00 0.00 5.14
955 1362 3.990466 GGACGAAATTTGGGCCGA 58.010 55.556 9.56 0.00 0.00 5.54
962 1369 1.373590 AAATTTGGGCCGATCGACCG 61.374 55.000 18.66 0.00 0.00 4.79
967 1376 3.912907 GGCCGATCGACCGACCAT 61.913 66.667 18.66 0.00 32.15 3.55
969 1378 3.116463 CCGATCGACCGACCATGA 58.884 61.111 18.66 0.00 0.00 3.07
970 1379 1.008424 CCGATCGACCGACCATGAG 60.008 63.158 18.66 0.00 0.00 2.90
971 1380 1.725557 CCGATCGACCGACCATGAGT 61.726 60.000 18.66 0.00 0.00 3.41
982 1391 1.405821 GACCATGAGTCTAGTCACCCG 59.594 57.143 0.00 0.00 42.69 5.28
986 1395 3.181489 CCATGAGTCTAGTCACCCGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
1011 2882 6.282930 CAAAACAAGGGAAATGTCAATCACT 58.717 36.000 0.00 0.00 0.00 3.41
1015 2886 5.010012 ACAAGGGAAATGTCAATCACTCAAC 59.990 40.000 0.00 0.00 0.00 3.18
1018 2889 5.598005 AGGGAAATGTCAATCACTCAACAAA 59.402 36.000 0.00 0.00 0.00 2.83
1032 2903 2.292292 TCAACAAAGAAGCGTAAAGGCC 59.708 45.455 0.00 0.00 0.00 5.19
1037 2908 3.575965 AAGAAGCGTAAAGGCCAATTG 57.424 42.857 5.01 0.00 0.00 2.32
1043 2914 2.780993 CGTAAAGGCCAATTGCGTTAG 58.219 47.619 18.93 0.00 46.76 2.34
1068 2939 2.202878 GAGCTTACGGGCATCGCA 60.203 61.111 0.00 0.00 43.89 5.10
1074 2945 2.607668 TTACGGGCATCGCACTCTCG 62.608 60.000 0.00 0.00 43.89 4.04
1191 3114 1.153745 CCTCAAGTCGCTCCCTTCG 60.154 63.158 0.00 0.00 0.00 3.79
1431 3354 2.737376 GTCTTCTTCCGCGCCGTT 60.737 61.111 0.00 0.00 0.00 4.44
1506 3429 4.673298 TGCAACGGACGCGTGGAT 62.673 61.111 20.70 0.00 0.00 3.41
1797 3720 4.414956 TCCCTCCTGATGCGGGGT 62.415 66.667 0.00 0.00 39.80 4.95
1800 3723 2.801631 CCTCCTGATGCGGGGTCTC 61.802 68.421 0.00 0.00 0.00 3.36
1833 3756 2.383527 GCAGGACGACGCCAAGAAG 61.384 63.158 10.28 0.00 0.00 2.85
1958 3881 2.587194 GCTCTCCGACATGCGCAT 60.587 61.111 19.28 19.28 39.11 4.73
2070 3993 2.548875 GTCGAGATGCAGCTCAAAGAT 58.451 47.619 29.71 0.00 34.56 2.40
2075 3998 1.681793 GATGCAGCTCAAAGATGGCAT 59.318 47.619 0.00 0.00 33.48 4.40
2223 4146 3.058160 CACCTGGCGAAAGGGCTG 61.058 66.667 8.51 0.00 42.11 4.85
2319 4242 4.329545 GGGTGGCGGTCTCTTGCA 62.330 66.667 0.00 0.00 0.00 4.08
2406 4329 2.376518 ACATTTCCAGTCCATGTGAGGT 59.623 45.455 0.00 0.00 29.74 3.85
2415 4338 2.554032 GTCCATGTGAGGTTTTGACAGG 59.446 50.000 0.00 0.00 0.00 4.00
2417 4340 1.270550 CATGTGAGGTTTTGACAGGCC 59.729 52.381 0.00 0.00 0.00 5.19
2433 4356 2.252260 CCTCAGCCGTTGCGTTTG 59.748 61.111 0.00 0.00 44.33 2.93
2434 4357 2.542907 CCTCAGCCGTTGCGTTTGT 61.543 57.895 0.00 0.00 44.33 2.83
2435 4358 1.082756 CTCAGCCGTTGCGTTTGTC 60.083 57.895 0.00 0.00 44.33 3.18
2436 4359 1.771073 CTCAGCCGTTGCGTTTGTCA 61.771 55.000 0.00 0.00 44.33 3.58
2437 4360 1.654137 CAGCCGTTGCGTTTGTCAC 60.654 57.895 0.00 0.00 44.33 3.67
2438 4361 2.353030 GCCGTTGCGTTTGTCACC 60.353 61.111 0.00 0.00 0.00 4.02
2439 4362 2.830285 GCCGTTGCGTTTGTCACCT 61.830 57.895 0.00 0.00 0.00 4.00
2441 4364 0.938713 CCGTTGCGTTTGTCACCTTA 59.061 50.000 0.00 0.00 0.00 2.69
2442 4365 1.070175 CCGTTGCGTTTGTCACCTTAG 60.070 52.381 0.00 0.00 0.00 2.18
2443 4366 1.070175 CGTTGCGTTTGTCACCTTAGG 60.070 52.381 0.00 0.00 0.00 2.69
2444 4367 1.265905 GTTGCGTTTGTCACCTTAGGG 59.734 52.381 2.32 0.00 38.88 3.53
2445 4368 0.250553 TGCGTTTGTCACCTTAGGGG 60.251 55.000 2.32 0.00 41.89 4.79
2446 4369 0.958876 GCGTTTGTCACCTTAGGGGG 60.959 60.000 0.00 0.00 40.03 5.40
2460 4383 4.419921 GGGGGTCGGCGTTTCCAT 62.420 66.667 6.85 0.00 34.01 3.41
2461 4384 2.360726 GGGGTCGGCGTTTCCATT 60.361 61.111 6.85 0.00 34.01 3.16
2462 4385 2.696759 GGGGTCGGCGTTTCCATTG 61.697 63.158 6.85 0.00 34.01 2.82
2463 4386 1.969589 GGGTCGGCGTTTCCATTGT 60.970 57.895 6.85 0.00 34.01 2.71
2464 4387 1.520600 GGGTCGGCGTTTCCATTGTT 61.521 55.000 6.85 0.00 34.01 2.83
2465 4388 0.312729 GGTCGGCGTTTCCATTGTTT 59.687 50.000 6.85 0.00 34.01 2.83
2474 4397 5.276820 GGCGTTTCCATTGTTTTTCTCTTTG 60.277 40.000 0.00 0.00 34.01 2.77
2488 4411 7.624360 TTTTCTCTTTGTCTTGCTTCAGTTA 57.376 32.000 0.00 0.00 0.00 2.24
2492 4415 4.816385 TCTTTGTCTTGCTTCAGTTACAGG 59.184 41.667 0.00 0.00 0.00 4.00
2497 4420 2.169832 TGCTTCAGTTACAGGAGCAC 57.830 50.000 6.64 0.00 0.00 4.40
2500 4423 2.481952 GCTTCAGTTACAGGAGCACTTG 59.518 50.000 3.03 0.00 0.00 3.16
2533 4456 3.119029 GCAAAATGCATAAAGCTCCTGGA 60.119 43.478 0.00 0.00 44.26 3.86
2560 4483 4.400529 TGGCAGATAAAAGATGCGAGTA 57.599 40.909 0.00 0.00 40.90 2.59
2570 4493 3.377346 AGATGCGAGTATTACTGCTGG 57.623 47.619 0.00 0.00 0.00 4.85
2609 4532 2.657372 GCTTCTGTACTGAAGTTCGTCG 59.343 50.000 31.13 14.53 43.74 5.12
2619 4542 4.149396 ACTGAAGTTCGTCGGTTTATTTCG 59.851 41.667 0.00 0.00 33.09 3.46
2653 4576 7.275888 TCTGTGTGCAGTTTATCAATCTTTT 57.724 32.000 0.00 0.00 43.05 2.27
2673 4596 5.689383 TTTCATACCACTTTGAGAACTGC 57.311 39.130 0.00 0.00 0.00 4.40
2708 4631 0.398664 AATAGTCACCGGGGGAGGAG 60.399 60.000 2.42 0.00 34.73 3.69
2710 4633 1.807771 TAGTCACCGGGGGAGGAGTT 61.808 60.000 2.42 0.00 34.73 3.01
2729 4654 2.987149 GTTGCCACCTGTATATCGATCG 59.013 50.000 9.36 9.36 0.00 3.69
2759 4684 6.316140 TCAGAAAGAATGATCCGGTTTATGTG 59.684 38.462 0.00 0.00 0.00 3.21
2813 4824 1.593933 CGTGAGAAACCGAAACCGAAA 59.406 47.619 0.00 0.00 0.00 3.46
3027 5039 4.163427 ACAGGGAGAGAGATGACAAGAAA 58.837 43.478 0.00 0.00 0.00 2.52
3189 5234 3.770263 TCGTAAATTCGACGACCATCT 57.230 42.857 10.55 0.00 43.99 2.90
3242 5287 1.989165 GCAAAGAACAACACACGCAAA 59.011 42.857 0.00 0.00 0.00 3.68
3249 5294 1.179332 CAACACACGCAAACAGTTCG 58.821 50.000 0.00 0.00 0.00 3.95
3372 5417 6.708054 GCCAACTAGCAGTATTTCTCATACAT 59.292 38.462 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.376234 TGATACTAGTTCTAGCACGCGTT 59.624 43.478 10.22 0.00 0.00 4.84
14 15 7.147707 GGTTCCACCATTACTGATACTAGTTCT 60.148 40.741 0.00 0.00 38.42 3.01
22 23 2.158871 GCCGGTTCCACCATTACTGATA 60.159 50.000 1.90 0.00 38.47 2.15
23 24 1.408266 GCCGGTTCCACCATTACTGAT 60.408 52.381 1.90 0.00 38.47 2.90
24 25 0.035820 GCCGGTTCCACCATTACTGA 60.036 55.000 1.90 0.00 38.47 3.41
95 96 1.302192 ACCGTCGGTCCCAACATTG 60.302 57.895 12.23 0.00 0.00 2.82
222 223 1.978455 TTCACCGTCAACAGCAGGGT 61.978 55.000 0.00 0.00 32.03 4.34
238 239 1.866601 CACGTCTGACATTGCAGTTCA 59.133 47.619 8.73 0.00 37.20 3.18
273 274 1.234821 GCTGGTTTCCAACATCACGA 58.765 50.000 0.00 0.00 30.80 4.35
311 312 2.328819 TGCAACAAAATGCCTTGCTT 57.671 40.000 3.50 0.00 45.83 3.91
367 368 3.078097 CAACATCCCACGGTCAAATACA 58.922 45.455 0.00 0.00 0.00 2.29
370 371 0.887933 GCAACATCCCACGGTCAAAT 59.112 50.000 0.00 0.00 0.00 2.32
371 372 1.511318 CGCAACATCCCACGGTCAAA 61.511 55.000 0.00 0.00 0.00 2.69
373 374 2.358125 CGCAACATCCCACGGTCA 60.358 61.111 0.00 0.00 0.00 4.02
421 422 1.038130 GCCGGTTAGAGCTCCTCTGA 61.038 60.000 10.93 0.00 41.37 3.27
445 446 1.966451 GTTGGTTGCAGTCTCCCCG 60.966 63.158 0.00 0.00 0.00 5.73
611 612 2.034687 CACTGCCTCACCCCTTGG 59.965 66.667 0.00 0.00 37.80 3.61
733 1102 2.825836 CCCCATCGAAGCACTGGC 60.826 66.667 0.00 0.00 41.61 4.85
757 1127 2.905075 CATAGAAGCACCGATGAACCA 58.095 47.619 0.00 0.00 0.00 3.67
760 1130 2.988010 AGCATAGAAGCACCGATGAA 57.012 45.000 3.40 0.00 36.85 2.57
763 1133 2.036475 CCACTAGCATAGAAGCACCGAT 59.964 50.000 0.00 0.00 42.77 4.18
812 1192 1.933115 GCCCCAAATCGTTGCGATGT 61.933 55.000 4.75 0.00 46.30 3.06
819 1199 1.241315 CGACCTTGCCCCAAATCGTT 61.241 55.000 0.00 0.00 31.63 3.85
820 1200 1.674322 CGACCTTGCCCCAAATCGT 60.674 57.895 0.00 0.00 31.63 3.73
832 1212 5.104527 TCCATAACTTCATTCATCCGACCTT 60.105 40.000 0.00 0.00 0.00 3.50
847 1254 3.058224 GTGCTCGCAGTTTTCCATAACTT 60.058 43.478 0.00 0.00 36.24 2.66
852 1259 0.884704 ACGTGCTCGCAGTTTTCCAT 60.885 50.000 8.29 0.00 41.18 3.41
888 1295 9.057089 GGAACAAATATAGATCGTTGGATTCTT 57.943 33.333 0.00 0.00 31.51 2.52
927 1334 4.688419 TTCGTCCGGTCGTCGTGC 62.688 66.667 20.21 0.00 37.11 5.34
932 1339 0.952010 CCCAAATTTCGTCCGGTCGT 60.952 55.000 20.21 0.00 0.00 4.34
940 1347 0.391927 TCGATCGGCCCAAATTTCGT 60.392 50.000 16.41 0.00 0.00 3.85
962 1369 1.405821 CGGGTGACTAGACTCATGGTC 59.594 57.143 0.00 6.29 44.80 4.02
967 1376 2.224843 TGGTTACGGGTGACTAGACTCA 60.225 50.000 0.00 0.00 0.00 3.41
969 1378 2.592102 TGGTTACGGGTGACTAGACT 57.408 50.000 0.00 0.00 0.00 3.24
970 1379 3.665745 TTTGGTTACGGGTGACTAGAC 57.334 47.619 0.00 0.00 0.00 2.59
971 1380 3.387374 TGTTTTGGTTACGGGTGACTAGA 59.613 43.478 0.00 0.00 0.00 2.43
982 1391 5.908341 TGACATTTCCCTTGTTTTGGTTAC 58.092 37.500 0.00 0.00 0.00 2.50
986 1395 5.466393 GTGATTGACATTTCCCTTGTTTTGG 59.534 40.000 0.00 0.00 0.00 3.28
1011 2882 2.292292 GGCCTTTACGCTTCTTTGTTGA 59.708 45.455 0.00 0.00 0.00 3.18
1015 2886 3.575965 ATTGGCCTTTACGCTTCTTTG 57.424 42.857 3.32 0.00 0.00 2.77
1018 2889 1.202348 GCAATTGGCCTTTACGCTTCT 59.798 47.619 3.32 0.00 36.11 2.85
1050 2921 3.330853 GCGATGCCCGTAAGCTCG 61.331 66.667 0.00 0.00 41.15 5.03
1061 2932 4.854784 TCGGCGAGAGTGCGATGC 62.855 66.667 4.99 0.00 35.06 3.91
1074 2945 2.517450 CGAGTTCGGAAGCATCGGC 61.517 63.158 10.46 0.00 36.51 5.54
1411 3334 2.202756 GGCGCGGAAGAAGACGAT 60.203 61.111 8.83 0.00 0.00 3.73
1833 3756 2.015736 ACTCCATGTCGAACATCAGC 57.984 50.000 0.00 0.00 36.53 4.26
2289 4212 1.389609 GCCACCCTTCTGCATCCATG 61.390 60.000 0.00 0.00 0.00 3.66
2340 4263 1.739562 GAGCTTCACCTCACCTGCG 60.740 63.158 0.00 0.00 0.00 5.18
2415 4338 3.660111 AAACGCAACGGCTGAGGC 61.660 61.111 0.00 0.00 38.10 4.70
2417 4340 1.082756 GACAAACGCAACGGCTGAG 60.083 57.895 0.00 0.00 38.10 3.35
2423 4346 1.070175 CCTAAGGTGACAAACGCAACG 60.070 52.381 0.00 0.00 0.00 4.10
2426 4349 0.250553 CCCCTAAGGTGACAAACGCA 60.251 55.000 0.00 0.00 0.00 5.24
2443 4366 3.931190 AATGGAAACGCCGACCCCC 62.931 63.158 0.00 0.00 40.66 5.40
2444 4367 2.360726 AATGGAAACGCCGACCCC 60.361 61.111 0.00 0.00 40.66 4.95
2445 4368 1.520600 AACAATGGAAACGCCGACCC 61.521 55.000 0.00 0.00 40.66 4.46
2446 4369 0.312729 AAACAATGGAAACGCCGACC 59.687 50.000 0.00 0.00 40.66 4.79
2447 4370 2.128367 AAAACAATGGAAACGCCGAC 57.872 45.000 0.00 0.00 40.66 4.79
2448 4371 2.359531 AGAAAAACAATGGAAACGCCGA 59.640 40.909 0.00 0.00 40.66 5.54
2449 4372 2.724174 GAGAAAAACAATGGAAACGCCG 59.276 45.455 0.00 0.00 40.66 6.46
2450 4373 3.977427 AGAGAAAAACAATGGAAACGCC 58.023 40.909 0.00 0.00 37.10 5.68
2451 4374 5.290885 ACAAAGAGAAAAACAATGGAAACGC 59.709 36.000 0.00 0.00 0.00 4.84
2452 4375 6.751888 AGACAAAGAGAAAAACAATGGAAACG 59.248 34.615 0.00 0.00 0.00 3.60
2453 4376 8.382875 CAAGACAAAGAGAAAAACAATGGAAAC 58.617 33.333 0.00 0.00 0.00 2.78
2454 4377 7.064490 GCAAGACAAAGAGAAAAACAATGGAAA 59.936 33.333 0.00 0.00 0.00 3.13
2455 4378 6.534793 GCAAGACAAAGAGAAAAACAATGGAA 59.465 34.615 0.00 0.00 0.00 3.53
2456 4379 6.042143 GCAAGACAAAGAGAAAAACAATGGA 58.958 36.000 0.00 0.00 0.00 3.41
2457 4380 6.044682 AGCAAGACAAAGAGAAAAACAATGG 58.955 36.000 0.00 0.00 0.00 3.16
2458 4381 7.276218 TGAAGCAAGACAAAGAGAAAAACAATG 59.724 33.333 0.00 0.00 0.00 2.82
2459 4382 7.322664 TGAAGCAAGACAAAGAGAAAAACAAT 58.677 30.769 0.00 0.00 0.00 2.71
2460 4383 6.686630 TGAAGCAAGACAAAGAGAAAAACAA 58.313 32.000 0.00 0.00 0.00 2.83
2461 4384 6.071952 ACTGAAGCAAGACAAAGAGAAAAACA 60.072 34.615 0.00 0.00 0.00 2.83
2462 4385 6.325596 ACTGAAGCAAGACAAAGAGAAAAAC 58.674 36.000 0.00 0.00 0.00 2.43
2463 4386 6.515272 ACTGAAGCAAGACAAAGAGAAAAA 57.485 33.333 0.00 0.00 0.00 1.94
2464 4387 6.515272 AACTGAAGCAAGACAAAGAGAAAA 57.485 33.333 0.00 0.00 0.00 2.29
2465 4388 6.597672 TGTAACTGAAGCAAGACAAAGAGAAA 59.402 34.615 0.00 0.00 0.00 2.52
2474 4397 2.739379 GCTCCTGTAACTGAAGCAAGAC 59.261 50.000 0.00 0.00 0.00 3.01
2488 4411 3.100545 CACAACCAAGTGCTCCTGT 57.899 52.632 0.00 0.00 32.04 4.00
2497 4420 2.021355 TTTTGCCTTGCACAACCAAG 57.979 45.000 0.00 0.00 38.71 3.61
2500 4423 0.587768 GCATTTTGCCTTGCACAACC 59.412 50.000 0.00 0.00 38.71 3.77
2524 4447 3.524826 TCTGCCATTATATCCAGGAGCT 58.475 45.455 0.00 0.00 0.00 4.09
2533 4456 7.826252 ACTCGCATCTTTTATCTGCCATTATAT 59.174 33.333 0.00 0.00 32.24 0.86
2560 4483 4.406972 TGAGCTATCACTTCCAGCAGTAAT 59.593 41.667 0.00 0.00 37.78 1.89
2595 4518 5.343058 CGAAATAAACCGACGAACTTCAGTA 59.657 40.000 0.00 0.00 0.00 2.74
2609 4532 8.718734 ACACAGATTTCTAACTCGAAATAAACC 58.281 33.333 0.00 0.00 42.09 3.27
2653 4576 3.674997 GGCAGTTCTCAAAGTGGTATGA 58.325 45.455 0.00 0.00 36.49 2.15
2687 4610 1.291637 TCCTCCCCCGGTGACTATTTA 59.708 52.381 0.00 0.00 0.00 1.40
2708 4631 2.987149 CGATCGATATACAGGTGGCAAC 59.013 50.000 10.26 0.00 0.00 4.17
2710 4633 1.067846 GCGATCGATATACAGGTGGCA 60.068 52.381 21.57 0.00 0.00 4.92
2729 4654 4.096984 ACCGGATCATTCTTTCTGAAATGC 59.903 41.667 9.46 0.00 38.29 3.56
2759 4684 6.212955 TCAATGGTTTTCAATTCGGTTTCTC 58.787 36.000 0.00 0.00 0.00 2.87
2771 4696 6.915300 CACGTAAACTGAATCAATGGTTTTCA 59.085 34.615 4.77 0.00 34.40 2.69
2813 4824 4.500716 CCCTCGCATTGTTAAGGTTTTTGT 60.501 41.667 0.00 0.00 0.00 2.83
2957 4969 1.906105 TTGGGCTATGACCACCCGTC 61.906 60.000 0.00 0.00 42.46 4.79
3027 5039 3.081061 TCAAAACGCCATTCAGTAGCAT 58.919 40.909 0.00 0.00 0.00 3.79
3189 5234 5.234329 GCATATTTTGCGCTAGTAGACAGAA 59.766 40.000 9.73 0.53 42.54 3.02
3242 5287 0.249911 GTGCCCTTCTGTCGAACTGT 60.250 55.000 0.00 0.00 0.00 3.55
3249 5294 3.565902 GCCATATAAAGTGCCCTTCTGTC 59.434 47.826 0.00 0.00 0.00 3.51
3320 5365 8.668510 ATTTGCCTTATACTCAGATTACACTG 57.331 34.615 0.00 0.00 39.02 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.