Multiple sequence alignment - TraesCS1B01G386600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G386600 chr1B 100.000 2077 0 0 629 2705 620899650 620901726 0.000000e+00 3836.0
1 TraesCS1B01G386600 chr1B 87.663 1532 109 46 904 2402 621059162 621060646 0.000000e+00 1709.0
2 TraesCS1B01G386600 chr1B 96.481 682 23 1 874 1555 621272397 621271717 0.000000e+00 1125.0
3 TraesCS1B01G386600 chr1B 93.198 691 44 2 908 1595 610558243 610558933 0.000000e+00 1013.0
4 TraesCS1B01G386600 chr1B 94.753 648 28 5 911 1555 620785975 620786619 0.000000e+00 1003.0
5 TraesCS1B01G386600 chr1B 90.782 716 43 5 1079 1771 620129838 620129123 0.000000e+00 935.0
6 TraesCS1B01G386600 chr1B 100.000 405 0 0 1 405 620899022 620899426 0.000000e+00 749.0
7 TraesCS1B01G386600 chr1B 99.679 312 1 0 1 312 620890829 620891140 3.020000e-159 571.0
8 TraesCS1B01G386600 chr1B 87.791 172 9 6 2534 2705 620552831 620552990 9.890000e-45 191.0
9 TraesCS1B01G386600 chr1B 83.529 85 14 0 2468 2552 620495386 620495302 2.230000e-11 80.5
10 TraesCS1B01G386600 chr1D 93.750 880 26 7 1079 1943 451524632 451525497 0.000000e+00 1293.0
11 TraesCS1B01G386600 chr1D 90.500 800 59 13 908 1694 446434635 446435430 0.000000e+00 1040.0
12 TraesCS1B01G386600 chr1D 93.241 651 35 5 911 1555 451624990 451625637 0.000000e+00 950.0
13 TraesCS1B01G386600 chr1D 89.973 728 47 7 1981 2705 451525498 451526202 0.000000e+00 917.0
14 TraesCS1B01G386600 chr1D 83.333 90 14 1 2457 2545 451293985 451294074 6.210000e-12 82.4
15 TraesCS1B01G386600 chr1A 92.597 770 33 4 1079 1837 546212407 546213163 0.000000e+00 1085.0
16 TraesCS1B01G386600 chr1A 94.290 648 32 3 911 1555 546216297 546216942 0.000000e+00 987.0
17 TraesCS1B01G386600 chr1A 91.137 677 46 7 981 1648 542167879 542168550 0.000000e+00 905.0
18 TraesCS1B01G386600 chr3A 99.359 312 2 0 1 312 319731563 319731874 1.410000e-157 566.0
19 TraesCS1B01G386600 chr3A 99.359 312 2 0 1 312 351651641 351651330 1.410000e-157 566.0
20 TraesCS1B01G386600 chr3A 99.045 314 1 1 1 312 404897713 404898026 1.820000e-156 562.0
21 TraesCS1B01G386600 chr3A 99.038 312 3 0 1 312 351659763 351659452 6.540000e-156 560.0
22 TraesCS1B01G386600 chr3A 99.035 311 3 0 2 312 230662286 230661976 2.350000e-155 558.0
23 TraesCS1B01G386600 chrUn 99.045 314 1 1 1 312 303844532 303844845 1.820000e-156 562.0
24 TraesCS1B01G386600 chr6B 99.042 313 3 0 1 313 378747309 378747621 1.820000e-156 562.0
25 TraesCS1B01G386600 chr4A 99.045 314 1 1 1 312 43803309 43803622 1.820000e-156 562.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G386600 chr1B 620899022 620901726 2704 False 2292.5 3836 100.0000 1 2705 2 chr1B.!!$F6 2704
1 TraesCS1B01G386600 chr1B 621059162 621060646 1484 False 1709.0 1709 87.6630 904 2402 1 chr1B.!!$F5 1498
2 TraesCS1B01G386600 chr1B 621271717 621272397 680 True 1125.0 1125 96.4810 874 1555 1 chr1B.!!$R3 681
3 TraesCS1B01G386600 chr1B 610558243 610558933 690 False 1013.0 1013 93.1980 908 1595 1 chr1B.!!$F1 687
4 TraesCS1B01G386600 chr1B 620785975 620786619 644 False 1003.0 1003 94.7530 911 1555 1 chr1B.!!$F3 644
5 TraesCS1B01G386600 chr1B 620129123 620129838 715 True 935.0 935 90.7820 1079 1771 1 chr1B.!!$R1 692
6 TraesCS1B01G386600 chr1D 451524632 451526202 1570 False 1105.0 1293 91.8615 1079 2705 2 chr1D.!!$F4 1626
7 TraesCS1B01G386600 chr1D 446434635 446435430 795 False 1040.0 1040 90.5000 908 1694 1 chr1D.!!$F1 786
8 TraesCS1B01G386600 chr1D 451624990 451625637 647 False 950.0 950 93.2410 911 1555 1 chr1D.!!$F3 644
9 TraesCS1B01G386600 chr1A 546212407 546216942 4535 False 1036.0 1085 93.4435 911 1837 2 chr1A.!!$F2 926
10 TraesCS1B01G386600 chr1A 542167879 542168550 671 False 905.0 905 91.1370 981 1648 1 chr1A.!!$F1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 780 0.032615 AGTGGCTCTAGGGTCTGGAG 60.033 60.0 0.0 4.26 41.15 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2413 5477 0.038618 TTCACACCGTCTCCATCACG 60.039 55.0 0.0 0.0 36.99 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 5.208463 GTTTAGATCAAAACCCTTGCCAA 57.792 39.130 0.00 0.00 34.02 4.52
136 137 5.606505 GTTTAGATCAAAACCCTTGCCAAA 58.393 37.500 0.00 0.00 34.02 3.28
138 139 4.769345 AGATCAAAACCCTTGCCAAAAA 57.231 36.364 0.00 0.00 0.00 1.94
139 140 5.308976 AGATCAAAACCCTTGCCAAAAAT 57.691 34.783 0.00 0.00 0.00 1.82
140 141 6.432403 AGATCAAAACCCTTGCCAAAAATA 57.568 33.333 0.00 0.00 0.00 1.40
141 142 7.019656 AGATCAAAACCCTTGCCAAAAATAT 57.980 32.000 0.00 0.00 0.00 1.28
142 143 7.460910 AGATCAAAACCCTTGCCAAAAATATT 58.539 30.769 0.00 0.00 0.00 1.28
143 144 8.601546 AGATCAAAACCCTTGCCAAAAATATTA 58.398 29.630 0.00 0.00 0.00 0.98
144 145 9.225436 GATCAAAACCCTTGCCAAAAATATTAA 57.775 29.630 0.00 0.00 0.00 1.40
145 146 8.980481 TCAAAACCCTTGCCAAAAATATTAAA 57.020 26.923 0.00 0.00 0.00 1.52
146 147 8.841300 TCAAAACCCTTGCCAAAAATATTAAAC 58.159 29.630 0.00 0.00 0.00 2.01
147 148 8.624776 CAAAACCCTTGCCAAAAATATTAAACA 58.375 29.630 0.00 0.00 0.00 2.83
148 149 8.932434 AAACCCTTGCCAAAAATATTAAACAT 57.068 26.923 0.00 0.00 0.00 2.71
149 150 8.560355 AACCCTTGCCAAAAATATTAAACATC 57.440 30.769 0.00 0.00 0.00 3.06
150 151 7.917003 ACCCTTGCCAAAAATATTAAACATCT 58.083 30.769 0.00 0.00 0.00 2.90
151 152 9.041354 ACCCTTGCCAAAAATATTAAACATCTA 57.959 29.630 0.00 0.00 0.00 1.98
152 153 9.883142 CCCTTGCCAAAAATATTAAACATCTAA 57.117 29.630 0.00 0.00 0.00 2.10
180 181 9.820725 AAGAACATTTTGAAACAATGAATGAGA 57.179 25.926 12.65 0.00 35.51 3.27
181 182 9.991906 AGAACATTTTGAAACAATGAATGAGAT 57.008 25.926 12.65 3.20 35.51 2.75
188 189 9.709495 TTTGAAACAATGAATGAGATTTTAGGG 57.291 29.630 0.00 0.00 0.00 3.53
189 190 8.421249 TGAAACAATGAATGAGATTTTAGGGT 57.579 30.769 0.00 0.00 0.00 4.34
190 191 8.869109 TGAAACAATGAATGAGATTTTAGGGTT 58.131 29.630 0.00 0.00 0.00 4.11
191 192 9.710900 GAAACAATGAATGAGATTTTAGGGTTT 57.289 29.630 0.00 0.00 0.00 3.27
196 197 6.463360 TGAATGAGATTTTAGGGTTTTTGCC 58.537 36.000 0.00 0.00 0.00 4.52
211 212 6.653320 GGGTTTTTGCCCTTCTTTTATTTAGG 59.347 38.462 0.00 0.00 45.22 2.69
220 221 7.611770 CCCTTCTTTTATTTAGGGTTTTGAGG 58.388 38.462 0.00 0.00 42.03 3.86
221 222 7.097192 CCTTCTTTTATTTAGGGTTTTGAGGC 58.903 38.462 0.00 0.00 0.00 4.70
222 223 7.039011 CCTTCTTTTATTTAGGGTTTTGAGGCT 60.039 37.037 0.00 0.00 0.00 4.58
223 224 7.849322 TCTTTTATTTAGGGTTTTGAGGCTT 57.151 32.000 0.00 0.00 0.00 4.35
224 225 7.892609 TCTTTTATTTAGGGTTTTGAGGCTTC 58.107 34.615 0.00 0.00 0.00 3.86
225 226 7.728532 TCTTTTATTTAGGGTTTTGAGGCTTCT 59.271 33.333 0.00 0.00 0.00 2.85
227 228 4.447138 TTTAGGGTTTTGAGGCTTCTGA 57.553 40.909 0.00 0.00 0.00 3.27
228 229 2.278332 AGGGTTTTGAGGCTTCTGAC 57.722 50.000 0.00 0.00 0.00 3.51
229 230 1.777272 AGGGTTTTGAGGCTTCTGACT 59.223 47.619 0.00 0.00 0.00 3.41
231 232 2.554462 GGGTTTTGAGGCTTCTGACTTC 59.446 50.000 0.00 0.00 0.00 3.01
232 233 2.554462 GGTTTTGAGGCTTCTGACTTCC 59.446 50.000 0.00 0.00 0.00 3.46
233 234 3.481453 GTTTTGAGGCTTCTGACTTCCT 58.519 45.455 0.00 0.00 0.00 3.36
234 235 3.409026 TTTGAGGCTTCTGACTTCCTC 57.591 47.619 10.45 10.45 44.04 3.71
237 238 1.899142 GAGGCTTCTGACTTCCTCAGT 59.101 52.381 11.81 0.00 46.09 3.41
238 239 2.301583 GAGGCTTCTGACTTCCTCAGTT 59.698 50.000 11.81 0.00 46.09 3.16
239 240 2.301583 AGGCTTCTGACTTCCTCAGTTC 59.698 50.000 0.00 0.00 46.09 3.01
240 241 2.037772 GGCTTCTGACTTCCTCAGTTCA 59.962 50.000 0.00 0.00 46.09 3.18
241 242 3.324993 GCTTCTGACTTCCTCAGTTCAG 58.675 50.000 0.00 0.00 46.09 3.02
242 243 3.864160 GCTTCTGACTTCCTCAGTTCAGG 60.864 52.174 0.00 0.00 46.09 3.86
243 244 2.964209 TCTGACTTCCTCAGTTCAGGT 58.036 47.619 0.00 0.00 46.09 4.00
244 245 3.309296 TCTGACTTCCTCAGTTCAGGTT 58.691 45.455 0.00 0.00 46.09 3.50
245 246 3.711704 TCTGACTTCCTCAGTTCAGGTTT 59.288 43.478 0.00 0.00 46.09 3.27
247 248 3.454447 TGACTTCCTCAGTTCAGGTTTCA 59.546 43.478 0.00 0.00 35.01 2.69
249 250 4.855340 ACTTCCTCAGTTCAGGTTTCAAA 58.145 39.130 0.00 0.00 34.76 2.69
251 252 5.714806 ACTTCCTCAGTTCAGGTTTCAAAAA 59.285 36.000 0.00 0.00 34.76 1.94
252 253 6.381133 ACTTCCTCAGTTCAGGTTTCAAAAAT 59.619 34.615 0.00 0.00 34.76 1.82
253 254 6.790232 TCCTCAGTTCAGGTTTCAAAAATT 57.210 33.333 0.00 0.00 34.76 1.82
254 255 7.181569 TCCTCAGTTCAGGTTTCAAAAATTT 57.818 32.000 0.00 0.00 34.76 1.82
255 256 8.299990 TCCTCAGTTCAGGTTTCAAAAATTTA 57.700 30.769 0.00 0.00 34.76 1.40
257 258 9.377312 CCTCAGTTCAGGTTTCAAAAATTTAAA 57.623 29.630 0.00 0.00 0.00 1.52
259 260 9.712305 TCAGTTCAGGTTTCAAAAATTTAAACA 57.288 25.926 14.08 0.00 35.33 2.83
265 266 9.384682 CAGGTTTCAAAAATTTAAACATGATGC 57.615 29.630 18.22 2.89 43.73 3.91
266 267 9.341078 AGGTTTCAAAAATTTAAACATGATGCT 57.659 25.926 14.08 2.30 35.33 3.79
267 268 9.597999 GGTTTCAAAAATTTAAACATGATGCTC 57.402 29.630 14.08 0.00 35.33 4.26
270 271 9.761504 TTCAAAAATTTAAACATGATGCTCAGA 57.238 25.926 0.00 0.00 0.00 3.27
271 272 9.932207 TCAAAAATTTAAACATGATGCTCAGAT 57.068 25.926 0.00 0.00 0.00 2.90
272 273 9.967245 CAAAAATTTAAACATGATGCTCAGATG 57.033 29.630 0.00 0.00 0.00 2.90
274 275 7.649533 AATTTAAACATGATGCTCAGATGGA 57.350 32.000 0.00 0.00 0.00 3.41
275 276 7.649533 ATTTAAACATGATGCTCAGATGGAA 57.350 32.000 0.00 0.00 0.00 3.53
276 277 6.688637 TTAAACATGATGCTCAGATGGAAG 57.311 37.500 0.00 0.00 0.00 3.46
277 278 2.573369 ACATGATGCTCAGATGGAAGC 58.427 47.619 0.00 0.00 0.00 3.86
278 279 2.092592 ACATGATGCTCAGATGGAAGCA 60.093 45.455 0.00 0.00 41.73 3.91
279 280 2.793288 TGATGCTCAGATGGAAGCAA 57.207 45.000 0.69 0.00 40.82 3.91
280 281 2.640184 TGATGCTCAGATGGAAGCAAG 58.360 47.619 0.69 0.00 40.82 4.01
281 282 1.334243 GATGCTCAGATGGAAGCAAGC 59.666 52.381 0.69 0.00 40.82 4.01
282 283 0.037160 TGCTCAGATGGAAGCAAGCA 59.963 50.000 0.00 0.00 40.22 3.91
283 284 1.340697 TGCTCAGATGGAAGCAAGCAT 60.341 47.619 0.00 0.00 38.16 3.79
285 286 2.548904 GCTCAGATGGAAGCAAGCATAG 59.451 50.000 0.00 0.00 34.10 2.23
286 287 3.139850 CTCAGATGGAAGCAAGCATAGG 58.860 50.000 0.00 0.00 0.00 2.57
287 288 2.773661 TCAGATGGAAGCAAGCATAGGA 59.226 45.455 0.00 0.00 0.00 2.94
289 290 2.507058 AGATGGAAGCAAGCATAGGACA 59.493 45.455 0.00 0.00 0.00 4.02
290 291 2.408271 TGGAAGCAAGCATAGGACAG 57.592 50.000 0.00 0.00 0.00 3.51
291 292 1.065199 TGGAAGCAAGCATAGGACAGG 60.065 52.381 0.00 0.00 0.00 4.00
292 293 1.020437 GAAGCAAGCATAGGACAGGC 58.980 55.000 0.00 0.00 0.00 4.85
293 294 0.394899 AAGCAAGCATAGGACAGGCC 60.395 55.000 0.00 0.00 33.25 5.19
294 295 1.077501 GCAAGCATAGGACAGGCCA 60.078 57.895 5.01 0.00 40.02 5.36
295 296 1.099879 GCAAGCATAGGACAGGCCAG 61.100 60.000 5.01 0.00 40.02 4.85
297 298 1.065199 CAAGCATAGGACAGGCCAGAA 60.065 52.381 5.01 0.00 40.02 3.02
298 299 0.543749 AGCATAGGACAGGCCAGAAC 59.456 55.000 5.01 0.00 40.02 3.01
299 300 0.543749 GCATAGGACAGGCCAGAACT 59.456 55.000 5.01 3.40 40.02 3.01
300 301 1.762957 GCATAGGACAGGCCAGAACTA 59.237 52.381 5.01 5.76 40.02 2.24
301 302 2.224161 GCATAGGACAGGCCAGAACTAG 60.224 54.545 5.01 0.00 40.02 2.57
302 303 2.160721 TAGGACAGGCCAGAACTAGG 57.839 55.000 5.01 0.00 40.02 3.02
303 304 0.618968 AGGACAGGCCAGAACTAGGG 60.619 60.000 5.01 0.00 40.02 3.53
304 305 0.617820 GGACAGGCCAGAACTAGGGA 60.618 60.000 5.01 0.00 36.34 4.20
306 307 1.139853 GACAGGCCAGAACTAGGGATG 59.860 57.143 5.01 0.00 0.00 3.51
307 308 1.207791 CAGGCCAGAACTAGGGATGT 58.792 55.000 5.01 0.00 0.00 3.06
308 309 1.134280 CAGGCCAGAACTAGGGATGTG 60.134 57.143 5.01 0.00 0.00 3.21
309 310 1.204146 GGCCAGAACTAGGGATGTGA 58.796 55.000 0.00 0.00 0.00 3.58
310 311 1.134371 GGCCAGAACTAGGGATGTGAC 60.134 57.143 0.00 0.00 0.00 3.67
312 313 2.678190 GCCAGAACTAGGGATGTGACAC 60.678 54.545 0.00 0.00 0.00 3.67
314 315 1.825474 AGAACTAGGGATGTGACACCG 59.175 52.381 2.45 0.00 0.00 4.94
316 317 0.902984 ACTAGGGATGTGACACCGCA 60.903 55.000 2.45 0.00 37.19 5.69
317 318 0.249120 CTAGGGATGTGACACCGCAA 59.751 55.000 2.45 0.00 36.26 4.85
318 319 0.249120 TAGGGATGTGACACCGCAAG 59.751 55.000 2.45 0.00 36.26 4.01
319 320 1.003839 GGGATGTGACACCGCAAGA 60.004 57.895 2.45 0.00 43.02 3.02
321 322 1.021390 GGATGTGACACCGCAAGAGG 61.021 60.000 2.45 0.00 43.02 3.69
323 324 0.320771 ATGTGACACCGCAAGAGGTC 60.321 55.000 2.45 0.00 43.89 3.85
325 326 2.197605 TGACACCGCAAGAGGTCGA 61.198 57.895 0.00 0.00 43.89 4.20
328 329 3.292936 ACCGCAAGAGGTCGACGT 61.293 61.111 11.12 11.12 41.46 4.34
329 330 1.968017 ACCGCAAGAGGTCGACGTA 60.968 57.895 11.30 0.00 41.46 3.57
331 332 1.500844 CGCAAGAGGTCGACGTACT 59.499 57.895 11.30 7.48 43.02 2.73
332 333 0.793478 CGCAAGAGGTCGACGTACTG 60.793 60.000 11.30 11.98 43.02 2.74
334 335 1.162698 CAAGAGGTCGACGTACTGGA 58.837 55.000 11.30 0.00 0.00 3.86
337 338 1.065636 AGAGGTCGACGTACTGGATCA 60.066 52.381 11.30 0.00 0.00 2.92
338 339 1.331138 GAGGTCGACGTACTGGATCAG 59.669 57.143 11.30 0.00 37.52 2.90
340 341 0.381089 GTCGACGTACTGGATCAGGG 59.619 60.000 0.00 0.00 35.51 4.45
341 342 0.034767 TCGACGTACTGGATCAGGGT 60.035 55.000 0.00 0.00 35.51 4.34
342 343 0.815734 CGACGTACTGGATCAGGGTT 59.184 55.000 0.00 0.00 35.51 4.11
343 344 1.469251 CGACGTACTGGATCAGGGTTG 60.469 57.143 0.00 0.00 35.51 3.77
344 345 1.549170 GACGTACTGGATCAGGGTTGT 59.451 52.381 0.00 0.00 35.51 3.32
345 346 1.975680 ACGTACTGGATCAGGGTTGTT 59.024 47.619 0.00 0.00 35.51 2.83
347 348 3.194968 ACGTACTGGATCAGGGTTGTTAG 59.805 47.826 0.00 0.00 35.51 2.34
348 349 3.430374 CGTACTGGATCAGGGTTGTTAGG 60.430 52.174 0.00 0.00 35.51 2.69
349 350 1.282157 ACTGGATCAGGGTTGTTAGGC 59.718 52.381 0.00 0.00 35.51 3.93
350 351 0.623723 TGGATCAGGGTTGTTAGGCC 59.376 55.000 0.00 0.00 0.00 5.19
351 352 0.919710 GGATCAGGGTTGTTAGGCCT 59.080 55.000 11.78 11.78 0.00 5.19
353 354 2.104963 GGATCAGGGTTGTTAGGCCTAG 59.895 54.545 13.36 0.00 0.00 3.02
354 355 2.337359 TCAGGGTTGTTAGGCCTAGT 57.663 50.000 13.36 0.00 0.00 2.57
355 356 1.906574 TCAGGGTTGTTAGGCCTAGTG 59.093 52.381 13.36 3.77 0.00 2.74
357 358 0.743345 GGGTTGTTAGGCCTAGTGCG 60.743 60.000 13.36 0.00 42.61 5.34
358 359 1.366854 GGTTGTTAGGCCTAGTGCGC 61.367 60.000 13.36 0.00 42.61 6.09
365 366 2.190578 GCCTAGTGCGCCCTGAAT 59.809 61.111 4.18 0.00 0.00 2.57
366 367 2.182842 GCCTAGTGCGCCCTGAATG 61.183 63.158 4.18 0.00 0.00 2.67
370 371 0.613260 TAGTGCGCCCTGAATGTCTT 59.387 50.000 4.18 0.00 0.00 3.01
371 372 0.613260 AGTGCGCCCTGAATGTCTTA 59.387 50.000 4.18 0.00 0.00 2.10
372 373 0.727398 GTGCGCCCTGAATGTCTTAC 59.273 55.000 4.18 0.00 0.00 2.34
373 374 0.323302 TGCGCCCTGAATGTCTTACA 59.677 50.000 4.18 0.00 0.00 2.41
374 375 0.727398 GCGCCCTGAATGTCTTACAC 59.273 55.000 0.00 0.00 0.00 2.90
375 376 1.676014 GCGCCCTGAATGTCTTACACT 60.676 52.381 0.00 0.00 0.00 3.55
376 377 2.271800 CGCCCTGAATGTCTTACACTC 58.728 52.381 0.00 0.00 0.00 3.51
377 378 2.353704 CGCCCTGAATGTCTTACACTCA 60.354 50.000 0.00 0.00 31.32 3.41
378 379 3.674997 GCCCTGAATGTCTTACACTCAA 58.325 45.455 0.00 0.00 33.69 3.02
379 380 3.686726 GCCCTGAATGTCTTACACTCAAG 59.313 47.826 0.00 0.00 33.69 3.02
381 382 5.738909 CCCTGAATGTCTTACACTCAAGAT 58.261 41.667 0.00 0.00 33.69 2.40
382 383 5.814705 CCCTGAATGTCTTACACTCAAGATC 59.185 44.000 0.00 0.00 33.69 2.75
383 384 6.401394 CCTGAATGTCTTACACTCAAGATCA 58.599 40.000 0.00 0.00 33.69 2.92
384 385 6.875726 CCTGAATGTCTTACACTCAAGATCAA 59.124 38.462 0.00 0.00 33.69 2.57
385 386 7.388776 CCTGAATGTCTTACACTCAAGATCAAA 59.611 37.037 0.00 0.00 33.69 2.69
386 387 8.315391 TGAATGTCTTACACTCAAGATCAAAG 57.685 34.615 0.00 0.00 30.80 2.77
387 388 7.388776 TGAATGTCTTACACTCAAGATCAAAGG 59.611 37.037 0.00 0.00 30.80 3.11
388 389 6.174720 TGTCTTACACTCAAGATCAAAGGT 57.825 37.500 0.00 0.00 36.93 3.50
389 390 5.991606 TGTCTTACACTCAAGATCAAAGGTG 59.008 40.000 0.00 1.60 36.93 4.00
390 391 6.183360 TGTCTTACACTCAAGATCAAAGGTGA 60.183 38.462 13.17 1.08 36.93 4.02
391 392 6.706270 GTCTTACACTCAAGATCAAAGGTGAA 59.294 38.462 13.17 5.45 36.93 3.18
393 394 5.296151 ACACTCAAGATCAAAGGTGAAGA 57.704 39.130 13.17 0.00 37.30 2.87
394 395 5.303971 ACACTCAAGATCAAAGGTGAAGAG 58.696 41.667 13.17 0.00 37.30 2.85
395 396 4.153835 CACTCAAGATCAAAGGTGAAGAGC 59.846 45.833 0.00 0.00 37.30 4.09
396 397 4.202398 ACTCAAGATCAAAGGTGAAGAGCA 60.202 41.667 0.00 0.00 37.30 4.26
397 398 4.914983 TCAAGATCAAAGGTGAAGAGCAT 58.085 39.130 0.00 0.00 37.30 3.79
398 399 4.698780 TCAAGATCAAAGGTGAAGAGCATG 59.301 41.667 0.00 0.00 37.30 4.06
399 400 3.618351 AGATCAAAGGTGAAGAGCATGG 58.382 45.455 0.00 0.00 37.30 3.66
401 402 1.202915 TCAAAGGTGAAGAGCATGGCA 60.203 47.619 0.00 0.00 0.00 4.92
646 647 2.868504 GGGGGATCTTGGCCATAGA 58.131 57.895 6.09 13.20 0.00 1.98
648 649 1.283321 GGGGGATCTTGGCCATAGATC 59.717 57.143 30.36 30.36 44.67 2.75
649 650 2.273619 GGGGATCTTGGCCATAGATCT 58.726 52.381 33.21 17.72 44.74 2.75
650 651 3.454858 GGGGATCTTGGCCATAGATCTA 58.545 50.000 33.21 4.57 44.74 1.98
651 652 3.198853 GGGGATCTTGGCCATAGATCTAC 59.801 52.174 33.21 28.47 44.74 2.59
652 653 3.198853 GGGATCTTGGCCATAGATCTACC 59.801 52.174 33.21 27.69 44.74 3.18
653 654 3.118956 GGATCTTGGCCATAGATCTACCG 60.119 52.174 33.21 0.00 44.74 4.02
654 655 2.958818 TCTTGGCCATAGATCTACCGT 58.041 47.619 6.09 0.00 0.00 4.83
656 657 1.244816 TGGCCATAGATCTACCGTCG 58.755 55.000 0.00 0.00 0.00 5.12
657 658 1.202842 TGGCCATAGATCTACCGTCGA 60.203 52.381 0.00 0.00 0.00 4.20
658 659 2.093106 GGCCATAGATCTACCGTCGAT 58.907 52.381 4.10 0.00 0.00 3.59
659 660 2.097791 GGCCATAGATCTACCGTCGATC 59.902 54.545 4.10 5.14 38.01 3.69
660 661 2.097791 GCCATAGATCTACCGTCGATCC 59.902 54.545 4.10 0.00 38.39 3.36
661 662 3.344515 CCATAGATCTACCGTCGATCCA 58.655 50.000 4.10 0.00 38.39 3.41
662 663 3.756963 CCATAGATCTACCGTCGATCCAA 59.243 47.826 4.10 0.27 38.39 3.53
663 664 4.399618 CCATAGATCTACCGTCGATCCAAT 59.600 45.833 4.10 2.30 38.39 3.16
664 665 3.924918 AGATCTACCGTCGATCCAATG 57.075 47.619 8.95 0.00 38.39 2.82
665 666 2.558795 AGATCTACCGTCGATCCAATGG 59.441 50.000 8.95 0.00 38.39 3.16
666 667 1.771565 TCTACCGTCGATCCAATGGT 58.228 50.000 10.60 10.60 39.38 3.55
667 668 1.679680 TCTACCGTCGATCCAATGGTC 59.320 52.381 9.38 0.00 37.25 4.02
668 669 1.407618 CTACCGTCGATCCAATGGTCA 59.592 52.381 9.38 0.00 37.25 4.02
669 670 0.108329 ACCGTCGATCCAATGGTCAC 60.108 55.000 0.00 0.00 29.85 3.67
670 671 0.175760 CCGTCGATCCAATGGTCACT 59.824 55.000 0.00 0.00 0.00 3.41
671 672 1.560923 CGTCGATCCAATGGTCACTC 58.439 55.000 0.00 0.00 0.00 3.51
684 685 3.674997 TGGTCACTCCAGAATTTACAGC 58.325 45.455 0.00 0.00 41.93 4.40
685 686 3.327757 TGGTCACTCCAGAATTTACAGCT 59.672 43.478 0.00 0.00 41.93 4.24
686 687 3.686726 GGTCACTCCAGAATTTACAGCTG 59.313 47.826 13.48 13.48 35.97 4.24
692 693 2.290896 CCAGAATTTACAGCTGGTCCCA 60.291 50.000 19.93 0.00 43.25 4.37
694 695 4.019174 CAGAATTTACAGCTGGTCCCATT 58.981 43.478 19.93 8.48 0.00 3.16
696 697 1.544724 TTTACAGCTGGTCCCATTGC 58.455 50.000 19.93 0.00 0.00 3.56
697 698 0.323360 TTACAGCTGGTCCCATTGCC 60.323 55.000 19.93 0.00 0.00 4.52
698 699 1.496444 TACAGCTGGTCCCATTGCCA 61.496 55.000 19.93 0.00 0.00 4.92
699 700 1.607178 CAGCTGGTCCCATTGCCAA 60.607 57.895 5.57 0.00 33.93 4.52
700 701 1.607467 AGCTGGTCCCATTGCCAAC 60.607 57.895 0.00 0.00 33.93 3.77
701 702 2.649129 GCTGGTCCCATTGCCAACC 61.649 63.158 0.00 0.00 33.93 3.77
702 703 1.077265 CTGGTCCCATTGCCAACCT 59.923 57.895 0.00 0.00 33.93 3.50
703 704 1.228831 TGGTCCCATTGCCAACCTG 60.229 57.895 0.00 0.00 32.82 4.00
704 705 2.649129 GGTCCCATTGCCAACCTGC 61.649 63.158 0.00 0.00 0.00 4.85
705 706 2.283821 TCCCATTGCCAACCTGCC 60.284 61.111 0.00 0.00 0.00 4.85
706 707 2.604079 CCCATTGCCAACCTGCCA 60.604 61.111 0.00 0.00 0.00 4.92
707 708 2.652095 CCCATTGCCAACCTGCCAG 61.652 63.158 0.00 0.00 0.00 4.85
708 709 1.909781 CCATTGCCAACCTGCCAGT 60.910 57.895 0.00 0.00 0.00 4.00
709 710 1.474332 CCATTGCCAACCTGCCAGTT 61.474 55.000 0.00 0.00 0.00 3.16
710 711 1.255882 CATTGCCAACCTGCCAGTTA 58.744 50.000 0.00 0.00 0.00 2.24
712 713 0.184933 TTGCCAACCTGCCAGTTAGT 59.815 50.000 0.00 0.00 0.00 2.24
714 715 1.003118 TGCCAACCTGCCAGTTAGTAG 59.997 52.381 0.00 0.00 0.00 2.57
715 716 1.278127 GCCAACCTGCCAGTTAGTAGA 59.722 52.381 0.00 0.00 0.00 2.59
717 718 2.301870 CCAACCTGCCAGTTAGTAGACA 59.698 50.000 0.00 0.00 0.00 3.41
718 719 3.326747 CAACCTGCCAGTTAGTAGACAC 58.673 50.000 0.00 0.00 0.00 3.67
719 720 1.900486 ACCTGCCAGTTAGTAGACACC 59.100 52.381 0.00 0.00 0.00 4.16
720 721 2.180276 CCTGCCAGTTAGTAGACACCT 58.820 52.381 0.00 0.00 0.00 4.00
721 722 2.567615 CCTGCCAGTTAGTAGACACCTT 59.432 50.000 0.00 0.00 0.00 3.50
722 723 3.589988 CTGCCAGTTAGTAGACACCTTG 58.410 50.000 0.00 0.00 0.00 3.61
723 724 3.236047 TGCCAGTTAGTAGACACCTTGA 58.764 45.455 0.00 0.00 0.00 3.02
724 725 3.644265 TGCCAGTTAGTAGACACCTTGAA 59.356 43.478 0.00 0.00 0.00 2.69
725 726 4.246458 GCCAGTTAGTAGACACCTTGAAG 58.754 47.826 0.00 0.00 0.00 3.02
727 728 5.337652 GCCAGTTAGTAGACACCTTGAAGAT 60.338 44.000 0.00 0.00 0.00 2.40
728 729 6.102663 CCAGTTAGTAGACACCTTGAAGATG 58.897 44.000 0.00 0.00 0.00 2.90
729 730 6.102663 CAGTTAGTAGACACCTTGAAGATGG 58.897 44.000 0.00 0.00 0.00 3.51
730 731 3.618690 AGTAGACACCTTGAAGATGGC 57.381 47.619 0.00 0.00 0.00 4.40
731 732 2.093973 AGTAGACACCTTGAAGATGGCG 60.094 50.000 0.00 0.00 0.00 5.69
733 734 1.002134 ACACCTTGAAGATGGCGGG 60.002 57.895 0.00 0.00 0.00 6.13
734 735 1.750399 CACCTTGAAGATGGCGGGG 60.750 63.158 0.00 0.00 0.00 5.73
735 736 1.923395 ACCTTGAAGATGGCGGGGA 60.923 57.895 0.00 0.00 0.00 4.81
748 749 2.125269 GGGGACGTCCGGATTGTG 60.125 66.667 27.68 5.81 36.71 3.33
749 750 2.660802 GGGACGTCCGGATTGTGT 59.339 61.111 27.68 8.93 36.71 3.72
750 751 1.740296 GGGACGTCCGGATTGTGTG 60.740 63.158 27.68 1.71 36.71 3.82
751 752 1.740296 GGACGTCCGGATTGTGTGG 60.740 63.158 20.85 0.00 0.00 4.17
752 753 1.740296 GACGTCCGGATTGTGTGGG 60.740 63.158 16.07 0.00 0.00 4.61
753 754 2.162338 GACGTCCGGATTGTGTGGGA 62.162 60.000 16.07 0.00 0.00 4.37
755 756 0.462375 CGTCCGGATTGTGTGGGATA 59.538 55.000 7.81 0.00 0.00 2.59
757 758 2.494059 GTCCGGATTGTGTGGGATATG 58.506 52.381 7.81 0.00 0.00 1.78
758 759 1.202758 TCCGGATTGTGTGGGATATGC 60.203 52.381 0.00 0.00 0.00 3.14
760 761 2.296792 CGGATTGTGTGGGATATGCAA 58.703 47.619 0.00 0.00 0.00 4.08
761 762 2.291465 CGGATTGTGTGGGATATGCAAG 59.709 50.000 0.00 0.00 0.00 4.01
762 763 3.290710 GGATTGTGTGGGATATGCAAGT 58.709 45.455 0.00 0.00 0.00 3.16
763 764 3.067180 GGATTGTGTGGGATATGCAAGTG 59.933 47.826 0.00 0.00 0.00 3.16
764 765 2.127271 TGTGTGGGATATGCAAGTGG 57.873 50.000 0.00 0.00 0.00 4.00
769 770 2.104792 GTGGGATATGCAAGTGGCTCTA 59.895 50.000 0.00 0.00 45.15 2.43
771 772 2.289945 GGGATATGCAAGTGGCTCTAGG 60.290 54.545 0.00 0.00 45.15 3.02
772 773 2.289945 GGATATGCAAGTGGCTCTAGGG 60.290 54.545 0.00 0.00 45.15 3.53
773 774 1.879575 TATGCAAGTGGCTCTAGGGT 58.120 50.000 0.00 0.00 45.15 4.34
774 775 0.543749 ATGCAAGTGGCTCTAGGGTC 59.456 55.000 0.00 0.00 45.15 4.46
776 777 0.107945 GCAAGTGGCTCTAGGGTCTG 60.108 60.000 0.00 0.00 40.25 3.51
777 778 0.539051 CAAGTGGCTCTAGGGTCTGG 59.461 60.000 0.00 0.00 0.00 3.86
778 779 0.413832 AAGTGGCTCTAGGGTCTGGA 59.586 55.000 0.00 0.00 0.00 3.86
779 780 0.032615 AGTGGCTCTAGGGTCTGGAG 60.033 60.000 0.00 4.26 41.15 3.86
781 782 1.458588 GGCTCTAGGGTCTGGAGGG 60.459 68.421 9.69 0.00 39.10 4.30
782 783 1.458588 GCTCTAGGGTCTGGAGGGG 60.459 68.421 9.69 0.00 39.10 4.79
784 785 0.105913 CTCTAGGGTCTGGAGGGGTC 60.106 65.000 1.06 0.00 35.81 4.46
788 789 1.236026 AGGGTCTGGAGGGGTCCATA 61.236 60.000 0.00 0.00 39.34 2.74
789 790 1.054978 GGGTCTGGAGGGGTCCATAC 61.055 65.000 0.00 0.00 39.34 2.39
790 791 1.400530 GGTCTGGAGGGGTCCATACG 61.401 65.000 0.00 0.00 37.64 3.06
791 792 0.686769 GTCTGGAGGGGTCCATACGT 60.687 60.000 0.00 0.00 39.34 3.57
793 794 0.178068 CTGGAGGGGTCCATACGTTG 59.822 60.000 0.00 0.00 39.34 4.10
794 795 1.153229 GGAGGGGTCCATACGTTGC 60.153 63.158 0.00 0.00 0.00 4.17
795 796 1.600107 GAGGGGTCCATACGTTGCA 59.400 57.895 0.00 0.00 0.00 4.08
797 798 0.322187 AGGGGTCCATACGTTGCAAC 60.322 55.000 19.89 19.89 0.00 4.17
798 799 1.310216 GGGGTCCATACGTTGCAACC 61.310 60.000 23.42 7.71 0.00 3.77
799 800 0.606944 GGGTCCATACGTTGCAACCA 60.607 55.000 23.42 12.20 33.47 3.67
800 801 1.459450 GGTCCATACGTTGCAACCAT 58.541 50.000 23.42 13.95 32.58 3.55
802 803 2.612212 GGTCCATACGTTGCAACCATAG 59.388 50.000 23.42 11.95 32.58 2.23
803 804 3.527533 GTCCATACGTTGCAACCATAGA 58.472 45.455 23.42 12.40 0.00 1.98
804 805 3.936453 GTCCATACGTTGCAACCATAGAA 59.064 43.478 23.42 3.27 0.00 2.10
805 806 4.574828 GTCCATACGTTGCAACCATAGAAT 59.425 41.667 23.42 5.70 0.00 2.40
806 807 4.814234 TCCATACGTTGCAACCATAGAATC 59.186 41.667 23.42 0.00 0.00 2.52
807 808 4.574421 CCATACGTTGCAACCATAGAATCA 59.426 41.667 23.42 0.00 0.00 2.57
808 809 5.501715 CATACGTTGCAACCATAGAATCAC 58.498 41.667 23.42 0.00 0.00 3.06
809 810 2.747446 ACGTTGCAACCATAGAATCACC 59.253 45.455 23.42 0.00 0.00 4.02
810 811 2.097466 CGTTGCAACCATAGAATCACCC 59.903 50.000 23.42 0.00 0.00 4.61
812 813 1.308998 GCAACCATAGAATCACCCGG 58.691 55.000 0.00 0.00 0.00 5.73
814 815 2.487265 GCAACCATAGAATCACCCGGAT 60.487 50.000 0.73 0.00 38.05 4.18
817 818 5.373222 CAACCATAGAATCACCCGGATTTA 58.627 41.667 0.73 0.00 46.17 1.40
818 819 5.843019 ACCATAGAATCACCCGGATTTAT 57.157 39.130 0.73 0.00 46.17 1.40
819 820 5.560724 ACCATAGAATCACCCGGATTTATG 58.439 41.667 0.73 6.35 46.17 1.90
820 821 5.309543 ACCATAGAATCACCCGGATTTATGA 59.690 40.000 0.73 0.00 46.17 2.15
821 822 6.012508 ACCATAGAATCACCCGGATTTATGAT 60.013 38.462 0.73 0.87 46.17 2.45
822 823 6.886459 CCATAGAATCACCCGGATTTATGATT 59.114 38.462 0.73 10.11 46.17 2.57
824 825 8.796475 CATAGAATCACCCGGATTTATGATTTT 58.204 33.333 0.73 8.10 46.17 1.82
825 826 7.660030 AGAATCACCCGGATTTATGATTTTT 57.340 32.000 0.73 1.20 46.17 1.94
826 827 7.491682 AGAATCACCCGGATTTATGATTTTTG 58.508 34.615 0.73 0.00 46.17 2.44
828 829 4.709397 TCACCCGGATTTATGATTTTTGCT 59.291 37.500 0.73 0.00 0.00 3.91
829 830 5.186797 TCACCCGGATTTATGATTTTTGCTT 59.813 36.000 0.73 0.00 0.00 3.91
830 831 5.291614 CACCCGGATTTATGATTTTTGCTTG 59.708 40.000 0.73 0.00 0.00 4.01
831 832 4.810491 CCCGGATTTATGATTTTTGCTTGG 59.190 41.667 0.73 0.00 0.00 3.61
832 833 4.810491 CCGGATTTATGATTTTTGCTTGGG 59.190 41.667 0.00 0.00 0.00 4.12
833 834 4.810491 CGGATTTATGATTTTTGCTTGGGG 59.190 41.667 0.00 0.00 0.00 4.96
834 835 4.576053 GGATTTATGATTTTTGCTTGGGGC 59.424 41.667 0.00 0.00 42.22 5.80
837 838 3.793819 ATGATTTTTGCTTGGGGCTTT 57.206 38.095 0.00 0.00 42.39 3.51
838 839 2.848691 TGATTTTTGCTTGGGGCTTTG 58.151 42.857 0.00 0.00 42.39 2.77
839 840 2.172293 TGATTTTTGCTTGGGGCTTTGT 59.828 40.909 0.00 0.00 42.39 2.83
840 841 2.323968 TTTTTGCTTGGGGCTTTGTC 57.676 45.000 0.00 0.00 42.39 3.18
841 842 1.198713 TTTTGCTTGGGGCTTTGTCA 58.801 45.000 0.00 0.00 42.39 3.58
842 843 1.198713 TTTGCTTGGGGCTTTGTCAA 58.801 45.000 0.00 0.00 42.39 3.18
843 844 0.752054 TTGCTTGGGGCTTTGTCAAG 59.248 50.000 0.00 0.00 42.39 3.02
845 846 0.315251 GCTTGGGGCTTTGTCAAGTC 59.685 55.000 0.00 0.00 39.80 3.01
850 851 2.646121 GGCTTTGTCAAGTCCAGGG 58.354 57.895 0.00 0.00 31.86 4.45
851 852 1.527433 GGCTTTGTCAAGTCCAGGGC 61.527 60.000 0.00 0.00 31.86 5.19
852 853 0.823356 GCTTTGTCAAGTCCAGGGCA 60.823 55.000 0.00 0.00 31.86 5.36
853 854 1.691196 CTTTGTCAAGTCCAGGGCAA 58.309 50.000 0.00 0.00 0.00 4.52
854 855 2.242043 CTTTGTCAAGTCCAGGGCAAT 58.758 47.619 0.00 0.00 0.00 3.56
855 856 3.420893 CTTTGTCAAGTCCAGGGCAATA 58.579 45.455 0.00 0.00 0.00 1.90
856 857 2.489938 TGTCAAGTCCAGGGCAATAC 57.510 50.000 0.00 0.00 0.00 1.89
857 858 1.004277 TGTCAAGTCCAGGGCAATACC 59.996 52.381 0.00 0.00 37.93 2.73
867 868 3.562397 GGCAATACCCCTCGTTCAA 57.438 52.632 0.00 0.00 0.00 2.69
868 869 1.828979 GGCAATACCCCTCGTTCAAA 58.171 50.000 0.00 0.00 0.00 2.69
870 871 1.743394 GCAATACCCCTCGTTCAAAGG 59.257 52.381 0.00 0.00 0.00 3.11
904 905 1.306654 TTCGGGAGTGGGCCATACT 60.307 57.895 10.70 11.30 0.00 2.12
962 3943 3.869272 CAATCAGCGCGCACCTCC 61.869 66.667 35.10 1.61 0.00 4.30
1016 4000 2.044793 TTCCCCACAATCTCAGTCCT 57.955 50.000 0.00 0.00 0.00 3.85
1555 4545 4.877773 AGTTCACATCCTCCTAGACTGAT 58.122 43.478 0.00 0.00 0.00 2.90
1557 4547 4.256983 TCACATCCTCCTAGACTGATGT 57.743 45.455 12.42 12.42 46.41 3.06
1567 4557 1.801913 GACTGATGTCGCGTCGCTT 60.802 57.895 16.36 0.00 33.15 4.68
1568 4558 2.002963 GACTGATGTCGCGTCGCTTG 62.003 60.000 16.36 0.08 33.15 4.01
1569 4559 2.049526 TGATGTCGCGTCGCTTGT 60.050 55.556 16.36 0.00 0.00 3.16
1570 4560 1.617755 CTGATGTCGCGTCGCTTGTT 61.618 55.000 16.36 0.00 0.00 2.83
1571 4561 1.225475 GATGTCGCGTCGCTTGTTG 60.225 57.895 16.36 0.00 0.00 3.33
1572 4562 3.295228 ATGTCGCGTCGCTTGTTGC 62.295 57.895 16.36 0.00 38.57 4.17
1583 4573 2.795121 GCTTGTTGCGACAGATGTAG 57.205 50.000 6.92 2.60 37.04 2.74
1584 4574 2.069273 GCTTGTTGCGACAGATGTAGT 58.931 47.619 6.92 0.00 37.04 2.73
1585 4575 2.480419 GCTTGTTGCGACAGATGTAGTT 59.520 45.455 6.92 0.00 37.04 2.24
1586 4576 3.665323 GCTTGTTGCGACAGATGTAGTTG 60.665 47.826 6.92 0.00 37.04 3.16
1587 4577 2.412870 TGTTGCGACAGATGTAGTTGG 58.587 47.619 1.50 0.00 0.00 3.77
1588 4578 1.128692 GTTGCGACAGATGTAGTTGGC 59.871 52.381 0.00 0.00 0.00 4.52
1589 4579 0.608130 TGCGACAGATGTAGTTGGCT 59.392 50.000 0.00 0.00 0.00 4.75
1590 4580 1.002366 GCGACAGATGTAGTTGGCTG 58.998 55.000 0.00 0.00 34.65 4.85
1591 4581 1.002366 CGACAGATGTAGTTGGCTGC 58.998 55.000 0.00 0.00 31.74 5.25
1744 4789 8.240883 AGTACTAGTACTTTTGCTGAATTTCG 57.759 34.615 26.61 0.00 43.35 3.46
1771 4816 1.871772 GCTGAATGCTTGCTGTCGT 59.128 52.632 0.00 0.00 38.95 4.34
1788 4833 3.187227 TGTCGTCTCGTTGGTAGTAAGAC 59.813 47.826 0.00 0.00 34.40 3.01
1814 4868 5.301551 TGAATTCTGTGGTGCAAACAGTAAT 59.698 36.000 23.22 18.72 44.42 1.89
1820 4874 4.642437 TGTGGTGCAAACAGTAATTCAGAA 59.358 37.500 0.00 0.00 0.00 3.02
1846 4900 5.851720 AGTGATGCATCTCTGTATTGGTAG 58.148 41.667 26.17 0.00 30.22 3.18
1915 4970 5.445540 GCTTTCATTTCTTAGCAATGCAAGC 60.446 40.000 20.18 20.18 46.36 4.01
1918 4973 4.021280 TCATTTCTTAGCAATGCAAGCCAA 60.021 37.500 8.35 6.25 32.49 4.52
1944 4999 2.831333 CAGATTCCTGGTTCTCCATCG 58.169 52.381 0.00 0.00 43.43 3.84
1947 5002 1.639722 TTCCTGGTTCTCCATCGTCA 58.360 50.000 0.00 0.00 43.43 4.35
1948 5003 1.186200 TCCTGGTTCTCCATCGTCAG 58.814 55.000 0.00 0.00 43.43 3.51
1949 5004 0.176680 CCTGGTTCTCCATCGTCAGG 59.823 60.000 0.00 0.00 43.43 3.86
1951 5006 1.276421 CTGGTTCTCCATCGTCAGGTT 59.724 52.381 0.00 0.00 43.43 3.50
1952 5007 1.275291 TGGTTCTCCATCGTCAGGTTC 59.725 52.381 0.00 0.00 39.03 3.62
1953 5008 1.405661 GGTTCTCCATCGTCAGGTTCC 60.406 57.143 0.00 0.00 0.00 3.62
1954 5009 0.530744 TTCTCCATCGTCAGGTTCCG 59.469 55.000 0.00 0.00 0.00 4.30
1956 5011 0.246635 CTCCATCGTCAGGTTCCGTT 59.753 55.000 0.00 0.00 0.00 4.44
1960 5021 1.289109 ATCGTCAGGTTCCGTTTGCG 61.289 55.000 0.00 0.00 37.95 4.85
1966 5027 0.107268 AGGTTCCGTTTGCGTTAGGT 59.893 50.000 0.00 0.00 36.15 3.08
1975 5036 2.111999 TTGCGTTAGGTGCAGAGCCT 62.112 55.000 0.00 0.00 44.28 4.58
1976 5037 1.254975 TGCGTTAGGTGCAGAGCCTA 61.255 55.000 0.00 0.00 37.44 3.93
2013 5074 1.019805 GCGGACTTGGTGAACCTAGC 61.020 60.000 10.36 4.41 41.60 3.42
2038 5099 6.377996 CCTTGTTCAATCCTCCATGATTAACA 59.622 38.462 0.00 0.00 33.27 2.41
2053 5114 8.683615 CCATGATTAACATAGCATATCAGCAAT 58.316 33.333 0.00 0.00 37.46 3.56
2085 5146 7.191551 GTGTTATACATGAGCGTGTTACTCTA 58.808 38.462 0.00 0.00 35.12 2.43
2087 5148 7.699391 TGTTATACATGAGCGTGTTACTCTAAC 59.301 37.037 0.00 3.89 39.11 2.34
2101 5163 4.836125 ACTCTAACAACAGCAAATGTGG 57.164 40.909 0.00 0.00 43.00 4.17
2172 5234 5.362430 ACTGAACAAGATTAGGCTCTAGAGG 59.638 44.000 21.23 3.79 0.00 3.69
2197 5261 6.145371 GGATGCTTCTTTGTTTTATTTTCGCA 59.855 34.615 0.00 0.00 0.00 5.10
2215 5279 1.972872 CACTGCCCACTGAAGAAACT 58.027 50.000 0.00 0.00 0.00 2.66
2227 5291 5.916883 CACTGAAGAAACTTTACATGCCTTG 59.083 40.000 0.00 0.00 0.00 3.61
2258 5322 1.915489 TGGTGTACCATGGAGCTGAAT 59.085 47.619 21.47 0.00 42.01 2.57
2283 5347 3.476552 TCATCTTGTCCTGTGGTTGAAC 58.523 45.455 0.00 0.00 0.00 3.18
2306 5370 2.358003 GCGTCAGACTTGGCTGCT 60.358 61.111 0.00 0.00 35.86 4.24
2406 5470 0.101759 CCAATACATGTGCAGCTGCC 59.898 55.000 34.64 25.13 41.18 4.85
2407 5471 0.248336 CAATACATGTGCAGCTGCCG 60.248 55.000 34.64 22.01 41.18 5.69
2408 5472 0.392863 AATACATGTGCAGCTGCCGA 60.393 50.000 34.64 21.71 41.18 5.54
2409 5473 0.812811 ATACATGTGCAGCTGCCGAG 60.813 55.000 34.64 23.02 41.18 4.63
2410 5474 4.175489 CATGTGCAGCTGCCGAGC 62.175 66.667 34.64 21.53 46.64 5.03
2424 5488 1.875813 CGAGCTGCGTGATGGAGAC 60.876 63.158 0.00 0.00 38.54 3.36
2435 5499 0.608640 GATGGAGACGGTGTGAAGGT 59.391 55.000 0.00 0.00 0.00 3.50
2441 5505 2.591429 CGGTGTGAAGGTGCAGCA 60.591 61.111 19.63 0.00 33.77 4.41
2450 5514 1.109323 AAGGTGCAGCAGTGGTTTCC 61.109 55.000 19.63 0.00 0.00 3.13
2454 5518 2.281761 CAGCAGTGGTTTCCGCCT 60.282 61.111 0.00 0.00 33.99 5.52
2455 5519 1.003839 CAGCAGTGGTTTCCGCCTA 60.004 57.895 0.00 0.00 33.99 3.93
2458 5522 1.005394 CAGTGGTTTCCGCCTACGT 60.005 57.895 0.00 0.00 37.70 3.57
2469 5533 2.697761 GCCTACGTCGTCTCCTGCA 61.698 63.158 0.00 0.00 0.00 4.41
2481 5545 0.107993 CTCCTGCAGAATCTTCGCCA 60.108 55.000 17.39 0.00 0.00 5.69
2484 5548 1.159285 CTGCAGAATCTTCGCCACAA 58.841 50.000 8.42 0.00 0.00 3.33
2529 5593 2.809861 AAGCTGCAGGACATCCACCG 62.810 60.000 17.12 0.00 38.89 4.94
2532 5596 1.892819 CTGCAGGACATCCACCGAGT 61.893 60.000 5.57 0.00 38.89 4.18
2538 5602 1.592400 GACATCCACCGAGTCGTCCA 61.592 60.000 12.31 0.00 0.00 4.02
2576 5640 8.015658 GGTTGTAAAACAGAGCATACAAGTAAG 58.984 37.037 0.00 0.00 38.51 2.34
2583 5647 6.055588 ACAGAGCATACAAGTAAGTGTGTTT 58.944 36.000 0.00 0.00 33.71 2.83
2599 5663 3.126858 TGTGTTTGCTTCAGTGTCAAGAC 59.873 43.478 0.00 0.00 0.00 3.01
2610 5674 3.305398 GTGTCAAGACCACACTAGGAG 57.695 52.381 0.00 0.00 40.93 3.69
2664 5728 5.451908 TGAATTGCTTTAGAACGCAGAAAG 58.548 37.500 0.00 0.00 37.46 2.62
2668 5732 3.990469 TGCTTTAGAACGCAGAAAGAGAG 59.010 43.478 0.00 0.00 32.94 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 4.864704 TGGCAAGGGTTTTGATCTAAAC 57.135 40.909 20.29 20.29 37.30 2.01
114 115 5.878406 TTTGGCAAGGGTTTTGATCTAAA 57.122 34.783 0.00 0.00 0.00 1.85
115 116 5.878406 TTTTGGCAAGGGTTTTGATCTAA 57.122 34.783 0.00 0.00 0.00 2.10
116 117 5.878406 TTTTTGGCAAGGGTTTTGATCTA 57.122 34.783 0.00 0.00 0.00 1.98
119 120 9.579932 TTTAATATTTTTGGCAAGGGTTTTGAT 57.420 25.926 0.00 0.00 0.00 2.57
120 121 8.841300 GTTTAATATTTTTGGCAAGGGTTTTGA 58.159 29.630 0.00 0.00 0.00 2.69
121 122 8.624776 TGTTTAATATTTTTGGCAAGGGTTTTG 58.375 29.630 0.00 0.00 0.00 2.44
123 124 8.932434 ATGTTTAATATTTTTGGCAAGGGTTT 57.068 26.923 0.00 0.00 0.00 3.27
125 126 7.917003 AGATGTTTAATATTTTTGGCAAGGGT 58.083 30.769 0.00 0.00 0.00 4.34
126 127 9.883142 TTAGATGTTTAATATTTTTGGCAAGGG 57.117 29.630 0.00 0.00 0.00 3.95
152 153 9.820725 TCATTCATTGTTTCAAAATGTTCTTCT 57.179 25.926 0.00 0.00 36.58 2.85
162 163 9.709495 CCCTAAAATCTCATTCATTGTTTCAAA 57.291 29.630 0.00 0.00 0.00 2.69
163 164 8.869109 ACCCTAAAATCTCATTCATTGTTTCAA 58.131 29.630 0.00 0.00 0.00 2.69
164 165 8.421249 ACCCTAAAATCTCATTCATTGTTTCA 57.579 30.769 0.00 0.00 0.00 2.69
165 166 9.710900 AAACCCTAAAATCTCATTCATTGTTTC 57.289 29.630 0.00 0.00 0.00 2.78
168 169 9.492973 CAAAAACCCTAAAATCTCATTCATTGT 57.507 29.630 0.00 0.00 0.00 2.71
169 170 8.445493 GCAAAAACCCTAAAATCTCATTCATTG 58.555 33.333 0.00 0.00 0.00 2.82
171 172 7.105588 GGCAAAAACCCTAAAATCTCATTCAT 58.894 34.615 0.00 0.00 0.00 2.57
172 173 6.463360 GGCAAAAACCCTAAAATCTCATTCA 58.537 36.000 0.00 0.00 0.00 2.57
173 174 6.968131 GGCAAAAACCCTAAAATCTCATTC 57.032 37.500 0.00 0.00 0.00 2.67
187 188 6.653320 CCCTAAATAAAAGAAGGGCAAAAACC 59.347 38.462 0.00 0.00 42.22 3.27
188 189 7.667043 CCCTAAATAAAAGAAGGGCAAAAAC 57.333 36.000 0.00 0.00 42.22 2.43
196 197 7.039011 AGCCTCAAAACCCTAAATAAAAGAAGG 60.039 37.037 0.00 0.00 0.00 3.46
197 198 7.896811 AGCCTCAAAACCCTAAATAAAAGAAG 58.103 34.615 0.00 0.00 0.00 2.85
198 199 7.849322 AGCCTCAAAACCCTAAATAAAAGAA 57.151 32.000 0.00 0.00 0.00 2.52
199 200 7.728532 AGAAGCCTCAAAACCCTAAATAAAAGA 59.271 33.333 0.00 0.00 0.00 2.52
200 201 7.814587 CAGAAGCCTCAAAACCCTAAATAAAAG 59.185 37.037 0.00 0.00 0.00 2.27
201 202 7.507616 TCAGAAGCCTCAAAACCCTAAATAAAA 59.492 33.333 0.00 0.00 0.00 1.52
202 203 7.007723 TCAGAAGCCTCAAAACCCTAAATAAA 58.992 34.615 0.00 0.00 0.00 1.40
203 204 6.433093 GTCAGAAGCCTCAAAACCCTAAATAA 59.567 38.462 0.00 0.00 0.00 1.40
204 205 5.944007 GTCAGAAGCCTCAAAACCCTAAATA 59.056 40.000 0.00 0.00 0.00 1.40
205 206 4.767409 GTCAGAAGCCTCAAAACCCTAAAT 59.233 41.667 0.00 0.00 0.00 1.40
206 207 4.141251 AGTCAGAAGCCTCAAAACCCTAAA 60.141 41.667 0.00 0.00 0.00 1.85
207 208 3.394606 AGTCAGAAGCCTCAAAACCCTAA 59.605 43.478 0.00 0.00 0.00 2.69
208 209 2.979678 AGTCAGAAGCCTCAAAACCCTA 59.020 45.455 0.00 0.00 0.00 3.53
211 212 2.554462 GGAAGTCAGAAGCCTCAAAACC 59.446 50.000 0.00 0.00 0.00 3.27
212 213 3.481453 AGGAAGTCAGAAGCCTCAAAAC 58.519 45.455 0.00 0.00 0.00 2.43
213 214 3.744660 GAGGAAGTCAGAAGCCTCAAAA 58.255 45.455 0.00 0.00 44.91 2.44
225 226 3.454447 TGAAACCTGAACTGAGGAAGTCA 59.546 43.478 0.00 0.00 38.56 3.41
227 228 4.503714 TTGAAACCTGAACTGAGGAAGT 57.496 40.909 0.00 0.00 42.60 3.01
228 229 5.835113 TTTTGAAACCTGAACTGAGGAAG 57.165 39.130 0.00 0.00 36.51 3.46
229 230 6.790232 ATTTTTGAAACCTGAACTGAGGAA 57.210 33.333 0.00 0.00 36.51 3.36
231 232 8.940768 TTAAATTTTTGAAACCTGAACTGAGG 57.059 30.769 0.00 0.00 39.28 3.86
233 234 9.712305 TGTTTAAATTTTTGAAACCTGAACTGA 57.288 25.926 10.91 0.00 33.11 3.41
239 240 9.384682 GCATCATGTTTAAATTTTTGAAACCTG 57.615 29.630 10.91 11.08 33.11 4.00
240 241 9.341078 AGCATCATGTTTAAATTTTTGAAACCT 57.659 25.926 10.91 1.45 33.11 3.50
241 242 9.597999 GAGCATCATGTTTAAATTTTTGAAACC 57.402 29.630 10.91 0.00 31.68 3.27
260 261 6.985286 ATGCTTGCTTCCATCTGAGCATCA 62.985 45.833 3.04 1.87 44.85 3.07
261 262 1.334243 GCTTGCTTCCATCTGAGCATC 59.666 52.381 0.00 0.00 37.13 3.91
262 263 1.340697 TGCTTGCTTCCATCTGAGCAT 60.341 47.619 0.00 0.00 35.43 3.79
263 264 0.037160 TGCTTGCTTCCATCTGAGCA 59.963 50.000 0.00 0.00 37.76 4.26
264 265 1.390565 ATGCTTGCTTCCATCTGAGC 58.609 50.000 0.00 0.00 0.00 4.26
265 266 3.139850 CCTATGCTTGCTTCCATCTGAG 58.860 50.000 0.00 0.00 0.00 3.35
266 267 2.773661 TCCTATGCTTGCTTCCATCTGA 59.226 45.455 0.00 0.00 0.00 3.27
267 268 2.877168 GTCCTATGCTTGCTTCCATCTG 59.123 50.000 0.00 0.00 0.00 2.90
268 269 2.507058 TGTCCTATGCTTGCTTCCATCT 59.493 45.455 0.00 0.00 0.00 2.90
269 270 2.877168 CTGTCCTATGCTTGCTTCCATC 59.123 50.000 0.00 0.00 0.00 3.51
270 271 2.422519 CCTGTCCTATGCTTGCTTCCAT 60.423 50.000 0.00 0.00 0.00 3.41
271 272 1.065199 CCTGTCCTATGCTTGCTTCCA 60.065 52.381 0.00 0.00 0.00 3.53
272 273 1.673168 CCTGTCCTATGCTTGCTTCC 58.327 55.000 0.00 0.00 0.00 3.46
274 275 0.394899 GGCCTGTCCTATGCTTGCTT 60.395 55.000 0.00 0.00 0.00 3.91
275 276 1.225704 GGCCTGTCCTATGCTTGCT 59.774 57.895 0.00 0.00 0.00 3.91
276 277 1.077501 TGGCCTGTCCTATGCTTGC 60.078 57.895 3.32 0.00 35.26 4.01
277 278 0.543277 TCTGGCCTGTCCTATGCTTG 59.457 55.000 3.32 0.00 35.26 4.01
278 279 1.065126 GTTCTGGCCTGTCCTATGCTT 60.065 52.381 3.32 0.00 35.26 3.91
279 280 0.543749 GTTCTGGCCTGTCCTATGCT 59.456 55.000 3.32 0.00 35.26 3.79
280 281 0.543749 AGTTCTGGCCTGTCCTATGC 59.456 55.000 3.32 0.00 35.26 3.14
281 282 2.366916 CCTAGTTCTGGCCTGTCCTATG 59.633 54.545 3.32 2.30 35.26 2.23
282 283 2.683768 CCTAGTTCTGGCCTGTCCTAT 58.316 52.381 3.32 0.00 35.26 2.57
283 284 1.343075 CCCTAGTTCTGGCCTGTCCTA 60.343 57.143 3.32 7.49 35.26 2.94
285 286 0.617820 TCCCTAGTTCTGGCCTGTCC 60.618 60.000 3.32 0.00 0.00 4.02
286 287 1.139853 CATCCCTAGTTCTGGCCTGTC 59.860 57.143 3.32 1.83 0.00 3.51
287 288 1.207791 CATCCCTAGTTCTGGCCTGT 58.792 55.000 3.32 0.00 0.00 4.00
289 290 1.207791 CACATCCCTAGTTCTGGCCT 58.792 55.000 3.32 0.00 0.00 5.19
290 291 1.134371 GTCACATCCCTAGTTCTGGCC 60.134 57.143 0.00 0.00 0.00 5.36
291 292 1.555075 TGTCACATCCCTAGTTCTGGC 59.445 52.381 0.00 0.00 0.00 4.85
292 293 2.093447 GGTGTCACATCCCTAGTTCTGG 60.093 54.545 5.12 0.00 0.00 3.86
293 294 2.417379 CGGTGTCACATCCCTAGTTCTG 60.417 54.545 5.12 0.00 0.00 3.02
294 295 1.825474 CGGTGTCACATCCCTAGTTCT 59.175 52.381 5.12 0.00 0.00 3.01
295 296 1.739371 GCGGTGTCACATCCCTAGTTC 60.739 57.143 5.12 0.00 0.00 3.01
297 298 0.902984 TGCGGTGTCACATCCCTAGT 60.903 55.000 5.12 0.00 0.00 2.57
298 299 0.249120 TTGCGGTGTCACATCCCTAG 59.751 55.000 5.12 0.00 0.00 3.02
299 300 0.249120 CTTGCGGTGTCACATCCCTA 59.751 55.000 5.12 0.00 0.00 3.53
300 301 1.003355 CTTGCGGTGTCACATCCCT 60.003 57.895 5.12 0.00 0.00 4.20
301 302 1.003839 TCTTGCGGTGTCACATCCC 60.004 57.895 5.12 0.00 0.00 3.85
302 303 1.021390 CCTCTTGCGGTGTCACATCC 61.021 60.000 5.12 0.00 0.00 3.51
303 304 0.320771 ACCTCTTGCGGTGTCACATC 60.321 55.000 5.12 0.00 35.52 3.06
304 305 0.320771 GACCTCTTGCGGTGTCACAT 60.321 55.000 5.12 0.00 37.42 3.21
306 307 2.022129 CGACCTCTTGCGGTGTCAC 61.022 63.158 0.00 0.00 37.42 3.67
307 308 2.197605 TCGACCTCTTGCGGTGTCA 61.198 57.895 0.00 0.00 37.42 3.58
308 309 1.733399 GTCGACCTCTTGCGGTGTC 60.733 63.158 3.51 0.00 37.42 3.67
309 310 2.338984 GTCGACCTCTTGCGGTGT 59.661 61.111 3.51 0.00 37.42 4.16
310 311 2.191354 TACGTCGACCTCTTGCGGTG 62.191 60.000 10.58 0.00 37.42 4.94
312 313 1.513586 GTACGTCGACCTCTTGCGG 60.514 63.158 10.58 0.00 0.00 5.69
314 315 0.456312 CCAGTACGTCGACCTCTTGC 60.456 60.000 10.58 0.00 0.00 4.01
316 317 2.015587 GATCCAGTACGTCGACCTCTT 58.984 52.381 10.58 0.00 0.00 2.85
317 318 1.065636 TGATCCAGTACGTCGACCTCT 60.066 52.381 10.58 2.98 0.00 3.69
318 319 1.331138 CTGATCCAGTACGTCGACCTC 59.669 57.143 10.58 0.46 0.00 3.85
319 320 1.380524 CTGATCCAGTACGTCGACCT 58.619 55.000 10.58 0.34 0.00 3.85
321 322 0.381089 CCCTGATCCAGTACGTCGAC 59.619 60.000 5.18 5.18 0.00 4.20
322 323 0.034767 ACCCTGATCCAGTACGTCGA 60.035 55.000 0.00 0.00 0.00 4.20
323 324 0.815734 AACCCTGATCCAGTACGTCG 59.184 55.000 0.00 0.00 0.00 5.12
325 326 1.640917 ACAACCCTGATCCAGTACGT 58.359 50.000 0.00 0.00 0.00 3.57
328 329 2.504175 GCCTAACAACCCTGATCCAGTA 59.496 50.000 0.00 0.00 0.00 2.74
329 330 1.282157 GCCTAACAACCCTGATCCAGT 59.718 52.381 0.00 0.00 0.00 4.00
331 332 0.623723 GGCCTAACAACCCTGATCCA 59.376 55.000 0.00 0.00 0.00 3.41
332 333 0.919710 AGGCCTAACAACCCTGATCC 59.080 55.000 1.29 0.00 0.00 3.36
334 335 2.505819 CACTAGGCCTAACAACCCTGAT 59.494 50.000 14.85 0.00 0.00 2.90
337 338 0.618981 GCACTAGGCCTAACAACCCT 59.381 55.000 14.85 0.00 36.11 4.34
338 339 0.743345 CGCACTAGGCCTAACAACCC 60.743 60.000 14.85 0.00 40.31 4.11
340 341 2.087344 GCGCACTAGGCCTAACAAC 58.913 57.895 14.85 2.90 40.31 3.32
341 342 4.609995 GCGCACTAGGCCTAACAA 57.390 55.556 14.85 0.00 40.31 2.83
348 349 2.182842 CATTCAGGGCGCACTAGGC 61.183 63.158 14.30 0.00 39.90 3.93
349 350 0.811616 GACATTCAGGGCGCACTAGG 60.812 60.000 14.30 0.83 0.00 3.02
350 351 0.176680 AGACATTCAGGGCGCACTAG 59.823 55.000 14.30 7.40 0.00 2.57
351 352 0.613260 AAGACATTCAGGGCGCACTA 59.387 50.000 14.30 0.00 0.00 2.74
353 354 0.727398 GTAAGACATTCAGGGCGCAC 59.273 55.000 10.83 5.15 0.00 5.34
354 355 0.323302 TGTAAGACATTCAGGGCGCA 59.677 50.000 10.83 0.00 0.00 6.09
355 356 0.727398 GTGTAAGACATTCAGGGCGC 59.273 55.000 0.00 0.00 0.00 6.53
357 358 3.334583 TGAGTGTAAGACATTCAGGGC 57.665 47.619 1.12 0.00 39.45 5.19
358 359 5.152623 TCTTGAGTGTAAGACATTCAGGG 57.847 43.478 12.22 7.29 43.94 4.45
361 362 7.388776 CCTTTGATCTTGAGTGTAAGACATTCA 59.611 37.037 1.12 1.12 42.02 2.57
362 363 7.389053 ACCTTTGATCTTGAGTGTAAGACATTC 59.611 37.037 0.00 0.00 39.33 2.67
363 364 7.173907 CACCTTTGATCTTGAGTGTAAGACATT 59.826 37.037 0.00 0.00 39.33 2.71
365 366 5.991606 CACCTTTGATCTTGAGTGTAAGACA 59.008 40.000 0.00 0.00 39.33 3.41
366 367 6.223852 TCACCTTTGATCTTGAGTGTAAGAC 58.776 40.000 0.00 0.00 39.33 3.01
370 371 6.419484 TCTTCACCTTTGATCTTGAGTGTA 57.581 37.500 0.00 0.00 0.00 2.90
371 372 5.296151 TCTTCACCTTTGATCTTGAGTGT 57.704 39.130 0.00 0.00 0.00 3.55
372 373 4.153835 GCTCTTCACCTTTGATCTTGAGTG 59.846 45.833 0.00 0.00 0.00 3.51
373 374 4.202398 TGCTCTTCACCTTTGATCTTGAGT 60.202 41.667 0.00 0.00 0.00 3.41
374 375 4.321718 TGCTCTTCACCTTTGATCTTGAG 58.678 43.478 0.00 0.00 0.00 3.02
375 376 4.356405 TGCTCTTCACCTTTGATCTTGA 57.644 40.909 0.00 0.00 0.00 3.02
376 377 4.142447 CCATGCTCTTCACCTTTGATCTTG 60.142 45.833 0.00 0.00 0.00 3.02
377 378 4.015084 CCATGCTCTTCACCTTTGATCTT 58.985 43.478 0.00 0.00 0.00 2.40
378 379 3.618351 CCATGCTCTTCACCTTTGATCT 58.382 45.455 0.00 0.00 0.00 2.75
379 380 2.098770 GCCATGCTCTTCACCTTTGATC 59.901 50.000 0.00 0.00 0.00 2.92
381 382 1.202915 TGCCATGCTCTTCACCTTTGA 60.203 47.619 0.00 0.00 0.00 2.69
382 383 1.068055 GTGCCATGCTCTTCACCTTTG 60.068 52.381 0.00 0.00 0.00 2.77
383 384 1.251251 GTGCCATGCTCTTCACCTTT 58.749 50.000 0.00 0.00 0.00 3.11
384 385 0.111061 TGTGCCATGCTCTTCACCTT 59.889 50.000 0.00 0.00 0.00 3.50
385 386 0.607489 GTGTGCCATGCTCTTCACCT 60.607 55.000 0.00 0.00 0.00 4.00
386 387 1.878775 GTGTGCCATGCTCTTCACC 59.121 57.895 0.00 0.00 0.00 4.02
628 629 1.283321 GATCTATGGCCAAGATCCCCC 59.717 57.143 29.22 16.26 42.31 5.40
629 630 2.797177 GATCTATGGCCAAGATCCCC 57.203 55.000 29.22 16.49 42.31 4.81
632 633 3.511934 ACGGTAGATCTATGGCCAAGATC 59.488 47.826 30.71 30.71 46.48 2.75
634 635 2.891580 GACGGTAGATCTATGGCCAAGA 59.108 50.000 10.96 14.76 0.00 3.02
635 636 2.351835 CGACGGTAGATCTATGGCCAAG 60.352 54.545 10.96 9.18 0.00 3.61
636 637 1.611977 CGACGGTAGATCTATGGCCAA 59.388 52.381 10.96 0.00 0.00 4.52
638 639 1.531423 TCGACGGTAGATCTATGGCC 58.469 55.000 5.57 0.00 0.00 5.36
639 640 2.097791 GGATCGACGGTAGATCTATGGC 59.902 54.545 24.14 3.27 42.91 4.40
641 642 5.335935 CATTGGATCGACGGTAGATCTATG 58.664 45.833 24.14 21.92 42.91 2.23
643 644 3.756963 CCATTGGATCGACGGTAGATCTA 59.243 47.826 24.14 18.54 42.91 1.98
644 645 2.558795 CCATTGGATCGACGGTAGATCT 59.441 50.000 24.14 0.00 42.91 2.75
645 646 2.296471 ACCATTGGATCGACGGTAGATC 59.704 50.000 19.22 19.22 42.68 2.75
646 647 2.296471 GACCATTGGATCGACGGTAGAT 59.704 50.000 10.37 3.27 0.00 1.98
648 649 1.407618 TGACCATTGGATCGACGGTAG 59.592 52.381 10.37 0.00 0.00 3.18
649 650 1.135527 GTGACCATTGGATCGACGGTA 59.864 52.381 10.37 0.00 0.00 4.02
650 651 0.108329 GTGACCATTGGATCGACGGT 60.108 55.000 10.37 0.00 0.00 4.83
651 652 0.175760 AGTGACCATTGGATCGACGG 59.824 55.000 10.37 0.00 0.00 4.79
652 653 1.560923 GAGTGACCATTGGATCGACG 58.439 55.000 10.37 0.00 0.00 5.12
653 654 1.207089 TGGAGTGACCATTGGATCGAC 59.793 52.381 10.37 0.20 44.64 4.20
654 655 1.567357 TGGAGTGACCATTGGATCGA 58.433 50.000 10.37 0.00 44.64 3.59
664 665 3.686726 CAGCTGTAAATTCTGGAGTGACC 59.313 47.826 5.25 0.00 39.54 4.02
665 666 4.935885 CAGCTGTAAATTCTGGAGTGAC 57.064 45.455 5.25 0.00 0.00 3.67
673 674 4.019174 CAATGGGACCAGCTGTAAATTCT 58.981 43.478 13.81 0.00 0.00 2.40
674 675 3.429410 GCAATGGGACCAGCTGTAAATTC 60.429 47.826 13.81 0.69 0.00 2.17
675 676 2.497273 GCAATGGGACCAGCTGTAAATT 59.503 45.455 13.81 2.52 0.00 1.82
676 677 2.102578 GCAATGGGACCAGCTGTAAAT 58.897 47.619 13.81 0.00 0.00 1.40
677 678 1.544724 GCAATGGGACCAGCTGTAAA 58.455 50.000 13.81 0.00 0.00 2.01
678 679 0.323360 GGCAATGGGACCAGCTGTAA 60.323 55.000 13.81 0.00 0.00 2.41
680 681 2.036256 GGCAATGGGACCAGCTGT 59.964 61.111 13.81 0.11 0.00 4.40
682 683 1.607467 GTTGGCAATGGGACCAGCT 60.607 57.895 1.92 0.00 37.24 4.24
683 684 2.649129 GGTTGGCAATGGGACCAGC 61.649 63.158 1.92 0.00 37.24 4.85
684 685 1.077265 AGGTTGGCAATGGGACCAG 59.923 57.895 1.92 0.00 37.24 4.00
685 686 1.228831 CAGGTTGGCAATGGGACCA 60.229 57.895 1.92 0.00 34.60 4.02
686 687 2.649129 GCAGGTTGGCAATGGGACC 61.649 63.158 1.92 0.00 0.00 4.46
696 697 2.301870 TGTCTACTAACTGGCAGGTTGG 59.698 50.000 20.34 14.18 34.55 3.77
697 698 3.326747 GTGTCTACTAACTGGCAGGTTG 58.673 50.000 20.34 16.31 0.00 3.77
698 699 2.302157 GGTGTCTACTAACTGGCAGGTT 59.698 50.000 20.34 12.77 0.00 3.50
699 700 1.900486 GGTGTCTACTAACTGGCAGGT 59.100 52.381 20.34 16.10 0.00 4.00
700 701 2.180276 AGGTGTCTACTAACTGGCAGG 58.820 52.381 20.34 3.36 0.00 4.85
701 702 3.258372 TCAAGGTGTCTACTAACTGGCAG 59.742 47.826 14.16 14.16 0.00 4.85
702 703 3.236047 TCAAGGTGTCTACTAACTGGCA 58.764 45.455 0.00 0.00 0.00 4.92
703 704 3.955650 TCAAGGTGTCTACTAACTGGC 57.044 47.619 0.00 0.00 0.00 4.85
704 705 5.723672 TCTTCAAGGTGTCTACTAACTGG 57.276 43.478 0.00 0.00 0.00 4.00
705 706 6.102663 CCATCTTCAAGGTGTCTACTAACTG 58.897 44.000 0.00 0.00 0.00 3.16
706 707 5.337652 GCCATCTTCAAGGTGTCTACTAACT 60.338 44.000 0.00 0.00 0.00 2.24
707 708 4.870991 GCCATCTTCAAGGTGTCTACTAAC 59.129 45.833 0.00 0.00 0.00 2.34
708 709 4.381612 CGCCATCTTCAAGGTGTCTACTAA 60.382 45.833 0.00 0.00 0.00 2.24
709 710 3.130516 CGCCATCTTCAAGGTGTCTACTA 59.869 47.826 0.00 0.00 0.00 1.82
710 711 2.093973 CGCCATCTTCAAGGTGTCTACT 60.094 50.000 0.00 0.00 0.00 2.57
712 713 1.207089 CCGCCATCTTCAAGGTGTCTA 59.793 52.381 0.00 0.00 33.59 2.59
714 715 1.026718 CCCGCCATCTTCAAGGTGTC 61.027 60.000 0.00 0.00 33.59 3.67
715 716 1.002134 CCCGCCATCTTCAAGGTGT 60.002 57.895 0.00 0.00 33.59 4.16
717 718 1.923395 TCCCCGCCATCTTCAAGGT 60.923 57.895 0.00 0.00 0.00 3.50
718 719 1.452108 GTCCCCGCCATCTTCAAGG 60.452 63.158 0.00 0.00 0.00 3.61
719 720 1.815421 CGTCCCCGCCATCTTCAAG 60.815 63.158 0.00 0.00 0.00 3.02
720 721 2.267642 CGTCCCCGCCATCTTCAA 59.732 61.111 0.00 0.00 0.00 2.69
721 722 3.000819 ACGTCCCCGCCATCTTCA 61.001 61.111 0.00 0.00 37.70 3.02
722 723 2.202892 GACGTCCCCGCCATCTTC 60.203 66.667 3.51 0.00 37.70 2.87
723 724 3.782443 GGACGTCCCCGCCATCTT 61.782 66.667 24.75 0.00 37.70 2.40
731 732 2.125269 CACAATCCGGACGTCCCC 60.125 66.667 28.52 6.07 0.00 4.81
733 734 1.740296 CCACACAATCCGGACGTCC 60.740 63.158 25.28 25.28 0.00 4.79
734 735 1.740296 CCCACACAATCCGGACGTC 60.740 63.158 6.12 7.13 0.00 4.34
735 736 1.550130 ATCCCACACAATCCGGACGT 61.550 55.000 6.12 3.90 0.00 4.34
737 738 2.494059 CATATCCCACACAATCCGGAC 58.506 52.381 6.12 0.00 0.00 4.79
738 739 1.202758 GCATATCCCACACAATCCGGA 60.203 52.381 6.61 6.61 0.00 5.14
739 740 1.238439 GCATATCCCACACAATCCGG 58.762 55.000 0.00 0.00 0.00 5.14
740 741 1.965935 TGCATATCCCACACAATCCG 58.034 50.000 0.00 0.00 0.00 4.18
741 742 3.067180 CACTTGCATATCCCACACAATCC 59.933 47.826 0.00 0.00 0.00 3.01
742 743 3.067180 CCACTTGCATATCCCACACAATC 59.933 47.826 0.00 0.00 0.00 2.67
744 745 2.445427 CCACTTGCATATCCCACACAA 58.555 47.619 0.00 0.00 0.00 3.33
747 748 0.625316 AGCCACTTGCATATCCCACA 59.375 50.000 0.00 0.00 44.83 4.17
748 749 1.133976 AGAGCCACTTGCATATCCCAC 60.134 52.381 0.00 0.00 44.83 4.61
749 750 1.216064 AGAGCCACTTGCATATCCCA 58.784 50.000 0.00 0.00 44.83 4.37
750 751 2.289945 CCTAGAGCCACTTGCATATCCC 60.290 54.545 0.00 0.00 44.83 3.85
751 752 2.289945 CCCTAGAGCCACTTGCATATCC 60.290 54.545 0.00 0.00 44.83 2.59
752 753 2.370189 ACCCTAGAGCCACTTGCATATC 59.630 50.000 0.00 0.00 44.83 1.63
753 754 2.370189 GACCCTAGAGCCACTTGCATAT 59.630 50.000 0.00 0.00 44.83 1.78
755 756 0.543749 GACCCTAGAGCCACTTGCAT 59.456 55.000 0.00 0.00 44.83 3.96
757 758 0.107945 CAGACCCTAGAGCCACTTGC 60.108 60.000 0.00 0.00 41.71 4.01
758 759 0.539051 CCAGACCCTAGAGCCACTTG 59.461 60.000 0.00 0.00 0.00 3.16
760 761 0.032615 CTCCAGACCCTAGAGCCACT 60.033 60.000 0.00 0.00 0.00 4.00
761 762 1.045911 CCTCCAGACCCTAGAGCCAC 61.046 65.000 0.00 0.00 0.00 5.01
762 763 1.311403 CCTCCAGACCCTAGAGCCA 59.689 63.158 0.00 0.00 0.00 4.75
763 764 1.458588 CCCTCCAGACCCTAGAGCC 60.459 68.421 0.00 0.00 0.00 4.70
764 765 1.458588 CCCCTCCAGACCCTAGAGC 60.459 68.421 0.00 0.00 0.00 4.09
769 770 3.208592 TGGACCCCTCCAGACCCT 61.209 66.667 0.00 0.00 42.15 4.34
776 777 1.153229 GCAACGTATGGACCCCTCC 60.153 63.158 0.00 0.00 37.04 4.30
777 778 0.035820 TTGCAACGTATGGACCCCTC 60.036 55.000 0.00 0.00 0.00 4.30
778 779 0.322187 GTTGCAACGTATGGACCCCT 60.322 55.000 14.90 0.00 0.00 4.79
779 780 1.310216 GGTTGCAACGTATGGACCCC 61.310 60.000 22.67 1.48 0.00 4.95
781 782 1.459450 ATGGTTGCAACGTATGGACC 58.541 50.000 22.67 8.23 0.00 4.46
782 783 3.527533 TCTATGGTTGCAACGTATGGAC 58.472 45.455 22.67 8.04 0.00 4.02
784 785 4.574421 TGATTCTATGGTTGCAACGTATGG 59.426 41.667 22.67 19.45 0.00 2.74
788 789 2.747446 GGTGATTCTATGGTTGCAACGT 59.253 45.455 22.67 16.03 0.00 3.99
789 790 2.097466 GGGTGATTCTATGGTTGCAACG 59.903 50.000 22.67 9.52 0.00 4.10
790 791 2.097466 CGGGTGATTCTATGGTTGCAAC 59.903 50.000 21.59 21.59 0.00 4.17
791 792 2.364632 CGGGTGATTCTATGGTTGCAA 58.635 47.619 0.00 0.00 0.00 4.08
793 794 1.134220 TCCGGGTGATTCTATGGTTGC 60.134 52.381 0.00 0.00 0.00 4.17
794 795 3.492102 ATCCGGGTGATTCTATGGTTG 57.508 47.619 0.00 0.00 0.00 3.77
795 796 4.519906 AAATCCGGGTGATTCTATGGTT 57.480 40.909 0.00 0.00 42.97 3.67
797 798 5.804639 TCATAAATCCGGGTGATTCTATGG 58.195 41.667 0.00 0.00 42.97 2.74
798 799 7.928307 AATCATAAATCCGGGTGATTCTATG 57.072 36.000 0.00 6.05 42.97 2.23
799 800 8.940397 AAAATCATAAATCCGGGTGATTCTAT 57.060 30.769 0.00 0.00 42.97 1.98
800 801 8.629158 CAAAAATCATAAATCCGGGTGATTCTA 58.371 33.333 0.00 0.00 42.97 2.10
802 803 6.200854 GCAAAAATCATAAATCCGGGTGATTC 59.799 38.462 0.00 0.00 42.97 2.52
803 804 6.048509 GCAAAAATCATAAATCCGGGTGATT 58.951 36.000 0.00 7.75 45.75 2.57
804 805 5.363580 AGCAAAAATCATAAATCCGGGTGAT 59.636 36.000 0.00 1.53 34.22 3.06
805 806 4.709397 AGCAAAAATCATAAATCCGGGTGA 59.291 37.500 0.00 0.00 0.00 4.02
806 807 5.009854 AGCAAAAATCATAAATCCGGGTG 57.990 39.130 0.00 0.00 0.00 4.61
807 808 5.418676 CAAGCAAAAATCATAAATCCGGGT 58.581 37.500 0.00 0.00 0.00 5.28
808 809 4.810491 CCAAGCAAAAATCATAAATCCGGG 59.190 41.667 0.00 0.00 0.00 5.73
809 810 4.810491 CCCAAGCAAAAATCATAAATCCGG 59.190 41.667 0.00 0.00 0.00 5.14
810 811 4.810491 CCCCAAGCAAAAATCATAAATCCG 59.190 41.667 0.00 0.00 0.00 4.18
812 813 5.739752 GCCCCAAGCAAAAATCATAAATC 57.260 39.130 0.00 0.00 42.97 2.17
826 827 0.315251 GACTTGACAAAGCCCCAAGC 59.685 55.000 0.00 0.00 40.51 4.01
828 829 0.260230 TGGACTTGACAAAGCCCCAA 59.740 50.000 4.12 0.00 35.14 4.12
829 830 0.178992 CTGGACTTGACAAAGCCCCA 60.179 55.000 4.12 0.00 35.14 4.96
830 831 0.895559 CCTGGACTTGACAAAGCCCC 60.896 60.000 0.00 0.00 35.14 5.80
831 832 0.895559 CCCTGGACTTGACAAAGCCC 60.896 60.000 0.00 0.00 36.51 5.19
832 833 1.527433 GCCCTGGACTTGACAAAGCC 61.527 60.000 0.00 0.00 36.84 4.35
833 834 0.823356 TGCCCTGGACTTGACAAAGC 60.823 55.000 0.00 0.00 36.84 3.51
834 835 1.691196 TTGCCCTGGACTTGACAAAG 58.309 50.000 0.00 0.00 39.49 2.77
837 838 1.004277 GGTATTGCCCTGGACTTGACA 59.996 52.381 0.00 0.00 0.00 3.58
838 839 1.751437 GGTATTGCCCTGGACTTGAC 58.249 55.000 0.00 0.00 0.00 3.18
849 850 1.743394 CTTTGAACGAGGGGTATTGCC 59.257 52.381 0.00 0.00 0.00 4.52
850 851 1.743394 CCTTTGAACGAGGGGTATTGC 59.257 52.381 0.00 0.00 0.00 3.56
851 852 5.460742 CATCCCTTTGAACGAGGGGTATTG 61.461 50.000 9.20 3.35 46.30 1.90
852 853 3.371595 CATCCCTTTGAACGAGGGGTATT 60.372 47.826 9.20 0.00 46.30 1.89
853 854 2.172717 CATCCCTTTGAACGAGGGGTAT 59.827 50.000 9.20 0.00 46.30 2.73
854 855 1.557832 CATCCCTTTGAACGAGGGGTA 59.442 52.381 9.20 0.00 46.30 3.69
858 859 1.826385 AAGCATCCCTTTGAACGAGG 58.174 50.000 0.00 0.00 0.00 4.63
866 867 0.606604 CTGCTGCAAAGCATCCCTTT 59.393 50.000 3.02 0.00 44.47 3.11
867 868 0.541296 ACTGCTGCAAAGCATCCCTT 60.541 50.000 3.02 0.00 44.47 3.95
868 869 0.541296 AACTGCTGCAAAGCATCCCT 60.541 50.000 3.02 0.00 44.47 4.20
870 871 0.455633 CGAACTGCTGCAAAGCATCC 60.456 55.000 3.02 0.00 44.47 3.51
871 872 0.455633 CCGAACTGCTGCAAAGCATC 60.456 55.000 3.02 0.00 44.47 3.91
872 873 1.582968 CCGAACTGCTGCAAAGCAT 59.417 52.632 3.02 0.00 44.47 3.79
873 874 2.554636 CCCGAACTGCTGCAAAGCA 61.555 57.895 3.02 0.27 43.22 3.91
874 875 2.192608 CTCCCGAACTGCTGCAAAGC 62.193 60.000 3.02 0.00 0.00 3.51
875 876 0.886490 ACTCCCGAACTGCTGCAAAG 60.886 55.000 3.02 0.00 0.00 2.77
890 891 1.144057 CGACAGTATGGCCCACTCC 59.856 63.158 0.00 0.00 46.22 3.85
1016 4000 1.630126 GCTGGAGGCAGGGAAGATGA 61.630 60.000 0.00 0.00 41.35 2.92
1555 4545 3.995669 GCAACAAGCGACGCGACA 61.996 61.111 15.93 0.00 0.00 4.35
1567 4557 2.412870 CCAACTACATCTGTCGCAACA 58.587 47.619 0.00 0.00 0.00 3.33
1568 4558 1.128692 GCCAACTACATCTGTCGCAAC 59.871 52.381 0.00 0.00 0.00 4.17
1569 4559 1.001974 AGCCAACTACATCTGTCGCAA 59.998 47.619 0.00 0.00 0.00 4.85
1570 4560 0.608130 AGCCAACTACATCTGTCGCA 59.392 50.000 0.00 0.00 0.00 5.10
1571 4561 1.002366 CAGCCAACTACATCTGTCGC 58.998 55.000 0.00 0.00 0.00 5.19
1572 4562 1.002366 GCAGCCAACTACATCTGTCG 58.998 55.000 0.00 0.00 0.00 4.35
1573 4563 2.005451 CAGCAGCCAACTACATCTGTC 58.995 52.381 0.00 0.00 0.00 3.51
1574 4564 1.349026 ACAGCAGCCAACTACATCTGT 59.651 47.619 0.00 0.00 0.00 3.41
1575 4565 2.105006 ACAGCAGCCAACTACATCTG 57.895 50.000 0.00 0.00 0.00 2.90
1576 4566 2.224621 ACAACAGCAGCCAACTACATCT 60.225 45.455 0.00 0.00 0.00 2.90
1577 4567 2.154462 ACAACAGCAGCCAACTACATC 58.846 47.619 0.00 0.00 0.00 3.06
1578 4568 2.154462 GACAACAGCAGCCAACTACAT 58.846 47.619 0.00 0.00 0.00 2.29
1579 4569 1.140852 AGACAACAGCAGCCAACTACA 59.859 47.619 0.00 0.00 0.00 2.74
1580 4570 1.801178 GAGACAACAGCAGCCAACTAC 59.199 52.381 0.00 0.00 0.00 2.73
1581 4571 1.270839 GGAGACAACAGCAGCCAACTA 60.271 52.381 0.00 0.00 0.00 2.24
1582 4572 0.536006 GGAGACAACAGCAGCCAACT 60.536 55.000 0.00 0.00 0.00 3.16
1583 4573 0.536006 AGGAGACAACAGCAGCCAAC 60.536 55.000 0.00 0.00 0.00 3.77
1584 4574 0.535780 CAGGAGACAACAGCAGCCAA 60.536 55.000 0.00 0.00 0.00 4.52
1585 4575 1.071987 CAGGAGACAACAGCAGCCA 59.928 57.895 0.00 0.00 0.00 4.75
1586 4576 0.536006 AACAGGAGACAACAGCAGCC 60.536 55.000 0.00 0.00 0.00 4.85
1587 4577 2.072298 CTAACAGGAGACAACAGCAGC 58.928 52.381 0.00 0.00 0.00 5.25
1588 4578 3.062763 CACTAACAGGAGACAACAGCAG 58.937 50.000 0.00 0.00 0.00 4.24
1589 4579 2.224281 CCACTAACAGGAGACAACAGCA 60.224 50.000 0.00 0.00 0.00 4.41
1590 4580 2.224305 ACCACTAACAGGAGACAACAGC 60.224 50.000 0.00 0.00 0.00 4.40
1591 4581 3.654414 GACCACTAACAGGAGACAACAG 58.346 50.000 0.00 0.00 0.00 3.16
1674 4710 3.279434 ACTTCAGTTCTCACAACCAACC 58.721 45.455 0.00 0.00 0.00 3.77
1723 4765 6.307155 CCACGAAATTCAGCAAAAGTACTAG 58.693 40.000 0.00 0.00 0.00 2.57
1771 4816 4.025040 TCAGGTCTTACTACCAACGAGA 57.975 45.455 0.00 0.00 42.40 4.04
1788 4833 2.361757 TGTTTGCACCACAGAATTCAGG 59.638 45.455 8.44 8.96 0.00 3.86
1814 4868 6.647229 ACAGAGATGCATCACTATTTCTGAA 58.353 36.000 31.93 0.00 37.59 3.02
1820 4874 6.835174 ACCAATACAGAGATGCATCACTATT 58.165 36.000 27.81 19.52 0.00 1.73
1846 4900 7.921214 GCTTAAGCCCCTAGTAAAAATCAAATC 59.079 37.037 17.00 0.00 34.31 2.17
1915 4970 2.242043 ACCAGGAATCTGCAAACTTGG 58.758 47.619 0.00 0.00 39.61 3.61
1918 4973 3.416156 GAGAACCAGGAATCTGCAAACT 58.584 45.455 0.00 0.00 39.61 2.66
1944 4999 1.193874 CTAACGCAAACGGAACCTGAC 59.806 52.381 0.00 0.00 46.04 3.51
1947 5002 0.107268 ACCTAACGCAAACGGAACCT 59.893 50.000 0.00 0.00 46.04 3.50
1948 5003 0.236449 CACCTAACGCAAACGGAACC 59.764 55.000 0.00 0.00 46.04 3.62
1949 5004 0.385098 GCACCTAACGCAAACGGAAC 60.385 55.000 0.00 0.00 46.04 3.62
1951 5006 1.225376 CTGCACCTAACGCAAACGGA 61.225 55.000 0.00 0.00 46.04 4.69
1952 5007 1.206578 CTGCACCTAACGCAAACGG 59.793 57.895 0.00 0.00 46.04 4.44
1954 5009 0.110192 GCTCTGCACCTAACGCAAAC 60.110 55.000 0.00 0.00 39.30 2.93
1956 5011 1.671054 GGCTCTGCACCTAACGCAA 60.671 57.895 0.00 0.00 39.30 4.85
1960 5021 3.892588 AGACTATAGGCTCTGCACCTAAC 59.107 47.826 0.83 0.12 42.93 2.34
1966 5027 3.769300 TGAACAAGACTATAGGCTCTGCA 59.231 43.478 9.04 0.00 0.00 4.41
1975 5036 4.461431 TCCGCAAGACTGAACAAGACTATA 59.539 41.667 0.00 0.00 43.02 1.31
1976 5037 3.258372 TCCGCAAGACTGAACAAGACTAT 59.742 43.478 0.00 0.00 43.02 2.12
2002 5063 2.561478 TGAACAAGGCTAGGTTCACC 57.439 50.000 23.06 6.44 46.01 4.02
2013 5074 6.377996 TGTTAATCATGGAGGATTGAACAAGG 59.622 38.462 0.00 0.00 37.98 3.61
2053 5114 4.142026 ACGCTCATGTATAACACCAAGCTA 60.142 41.667 0.00 0.00 31.80 3.32
2085 5146 2.165437 ACGAACCACATTTGCTGTTGTT 59.835 40.909 0.00 0.00 44.10 2.83
2087 5148 2.490328 ACGAACCACATTTGCTGTTG 57.510 45.000 0.00 0.00 35.29 3.33
2090 5151 2.549754 AGAGAACGAACCACATTTGCTG 59.450 45.455 0.00 0.00 0.00 4.41
2101 5163 7.803189 TGCATTTCATTTTTCTAGAGAACGAAC 59.197 33.333 0.00 0.00 33.13 3.95
2102 5164 7.870826 TGCATTTCATTTTTCTAGAGAACGAA 58.129 30.769 0.00 0.00 33.13 3.85
2104 5166 7.805071 ACTTGCATTTCATTTTTCTAGAGAACG 59.195 33.333 0.00 0.00 33.13 3.95
2160 5222 2.448961 AGAAGCATCCCTCTAGAGCCTA 59.551 50.000 14.73 1.90 0.00 3.93
2172 5234 6.145371 TGCGAAAATAAAACAAAGAAGCATCC 59.855 34.615 0.00 0.00 0.00 3.51
2197 5261 2.736670 AAGTTTCTTCAGTGGGCAGT 57.263 45.000 0.00 0.00 0.00 4.40
2215 5279 2.027385 TGTGCACACAAGGCATGTAAA 58.973 42.857 17.42 0.00 44.11 2.01
2258 5322 4.777366 TCAACCACAGGACAAGATGATAGA 59.223 41.667 0.00 0.00 0.00 1.98
2283 5347 1.080995 GCCAAGTCTGACGCTGCTAG 61.081 60.000 1.52 0.00 0.00 3.42
2376 5440 5.534278 TGCACATGTATTGGACTTTGAAGAA 59.466 36.000 0.00 0.00 0.00 2.52
2406 5470 1.875813 GTCTCCATCACGCAGCTCG 60.876 63.158 4.36 4.36 45.38 5.03
2407 5471 1.875813 CGTCTCCATCACGCAGCTC 60.876 63.158 0.00 0.00 0.00 4.09
2408 5472 2.182791 CGTCTCCATCACGCAGCT 59.817 61.111 0.00 0.00 0.00 4.24
2409 5473 2.887568 CCGTCTCCATCACGCAGC 60.888 66.667 0.00 0.00 35.87 5.25
2410 5474 1.807165 CACCGTCTCCATCACGCAG 60.807 63.158 0.00 0.00 35.87 5.18
2411 5475 2.261361 CACCGTCTCCATCACGCA 59.739 61.111 0.00 0.00 35.87 5.24
2412 5476 2.094659 CACACCGTCTCCATCACGC 61.095 63.158 0.00 0.00 35.87 5.34
2413 5477 0.038618 TTCACACCGTCTCCATCACG 60.039 55.000 0.00 0.00 36.99 4.35
2424 5488 2.591429 TGCTGCACCTTCACACCG 60.591 61.111 0.00 0.00 0.00 4.94
2435 5499 3.286751 GCGGAAACCACTGCTGCA 61.287 61.111 0.88 0.88 38.89 4.41
2441 5505 1.291272 GACGTAGGCGGAAACCACT 59.709 57.895 0.00 0.00 43.45 4.00
2450 5514 2.403987 CAGGAGACGACGTAGGCG 59.596 66.667 0.00 0.00 44.93 5.52
2454 5518 1.400846 GATTCTGCAGGAGACGACGTA 59.599 52.381 15.13 0.00 0.00 3.57
2455 5519 0.171455 GATTCTGCAGGAGACGACGT 59.829 55.000 15.13 0.00 0.00 4.34
2458 5522 1.133216 CGAAGATTCTGCAGGAGACGA 59.867 52.381 15.13 0.00 0.00 4.20
2469 5533 1.148310 CACGTTGTGGCGAAGATTCT 58.852 50.000 0.00 0.00 35.59 2.40
2481 5545 3.513680 TGGCGACTATAATCACGTTGT 57.486 42.857 0.00 0.00 0.00 3.32
2484 5548 3.513680 TGTTGGCGACTATAATCACGT 57.486 42.857 6.41 0.00 0.00 4.49
2529 5593 1.080025 CGGTTTCCCTGGACGACTC 60.080 63.158 0.00 0.00 0.00 3.36
2532 5596 1.594833 CATCGGTTTCCCTGGACGA 59.405 57.895 0.00 0.63 38.00 4.20
2538 5602 3.512219 TTTACAACCATCGGTTTCCCT 57.488 42.857 0.00 0.00 44.33 4.20
2552 5616 8.556194 CACTTACTTGTATGCTCTGTTTTACAA 58.444 33.333 0.00 0.00 34.41 2.41
2576 5640 3.126858 TCTTGACACTGAAGCAAACACAC 59.873 43.478 0.00 0.00 0.00 3.82
2583 5647 1.209261 TGTGGTCTTGACACTGAAGCA 59.791 47.619 3.08 0.00 39.52 3.91
2599 5663 4.339247 CCAAATTAATGCCTCCTAGTGTGG 59.661 45.833 0.00 0.00 0.00 4.17
2610 5674 5.876460 AGCAAAAGATGACCAAATTAATGCC 59.124 36.000 0.00 0.00 0.00 4.40
2664 5728 5.047802 TGAAAATTGGCAAAGGTGATCTCTC 60.048 40.000 3.01 0.00 0.00 3.20
2668 5732 3.681417 GCTGAAAATTGGCAAAGGTGATC 59.319 43.478 3.01 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.