Multiple sequence alignment - TraesCS1B01G384900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G384900 chr1B 100.000 3344 0 0 1 3344 618195981 618199324 0.000000e+00 6176.0
1 TraesCS1B01G384900 chr1B 88.432 2118 134 34 774 2793 618316577 618318681 0.000000e+00 2451.0
2 TraesCS1B01G384900 chr1B 87.456 1435 128 24 986 2383 618542988 618544407 0.000000e+00 1605.0
3 TraesCS1B01G384900 chr1B 87.453 1060 119 8 1003 2052 618698914 618697859 0.000000e+00 1208.0
4 TraesCS1B01G384900 chr1B 88.388 999 102 10 995 1989 618908049 618907061 0.000000e+00 1190.0
5 TraesCS1B01G384900 chr1B 89.535 430 30 7 2928 3344 618551549 618551976 6.350000e-147 531.0
6 TraesCS1B01G384900 chr1B 90.533 338 25 2 3014 3344 618387167 618387504 1.100000e-119 440.0
7 TraesCS1B01G384900 chr1B 93.785 177 6 1 438 614 618542367 618542538 9.200000e-66 261.0
8 TraesCS1B01G384900 chr1B 87.719 228 17 6 31 248 618542134 618542360 4.280000e-64 255.0
9 TraesCS1B01G384900 chr1B 93.694 111 2 4 822 930 618542794 618542901 9.600000e-36 161.0
10 TraesCS1B01G384900 chr1B 90.598 117 5 1 2680 2796 618550026 618550136 2.080000e-32 150.0
11 TraesCS1B01G384900 chr1B 82.065 184 22 6 2510 2688 618544447 618544624 2.690000e-31 147.0
12 TraesCS1B01G384900 chr1B 93.220 59 3 1 764 821 618542714 618542772 5.940000e-13 86.1
13 TraesCS1B01G384900 chr1D 88.061 1893 124 29 954 2796 450739194 450741034 0.000000e+00 2150.0
14 TraesCS1B01G384900 chr1D 89.384 1460 127 15 953 2386 450579168 450580625 0.000000e+00 1812.0
15 TraesCS1B01G384900 chr1D 86.368 1137 127 19 1003 2119 450757612 450756484 0.000000e+00 1216.0
16 TraesCS1B01G384900 chr1D 91.960 398 27 3 2951 3344 450582327 450582723 1.360000e-153 553.0
17 TraesCS1B01G384900 chr1D 88.767 365 23 9 2995 3344 450743917 450744278 6.630000e-117 431.0
18 TraesCS1B01G384900 chr1D 91.139 237 12 1 3061 3297 451028398 451028625 2.500000e-81 313.0
19 TraesCS1B01G384900 chr1D 82.317 328 39 11 1 321 450576303 450576618 1.980000e-67 267.0
20 TraesCS1B01G384900 chr1D 87.764 237 18 6 1 227 450738316 450738551 1.980000e-67 267.0
21 TraesCS1B01G384900 chr1D 91.327 196 15 2 387 582 450738578 450738771 1.980000e-67 267.0
22 TraesCS1B01G384900 chr1D 87.192 203 19 4 378 578 450578501 450578698 1.210000e-54 224.0
23 TraesCS1B01G384900 chr1D 82.955 264 16 9 697 942 450738900 450739152 9.400000e-51 211.0
24 TraesCS1B01G384900 chr1D 84.974 193 4 5 764 936 450578926 450579113 4.440000e-39 172.0
25 TraesCS1B01G384900 chr1D 87.023 131 11 4 2926 3054 451028091 451028217 3.480000e-30 143.0
26 TraesCS1B01G384900 chr1D 81.457 151 15 9 3092 3238 450504876 450504735 9.810000e-21 111.0
27 TraesCS1B01G384900 chr1D 89.024 82 7 2 2842 2923 365051921 365052000 2.120000e-17 100.0
28 TraesCS1B01G384900 chr1D 82.400 125 13 5 778 894 451044221 451044098 2.120000e-17 100.0
29 TraesCS1B01G384900 chr1A 85.665 1744 151 43 822 2503 545751837 545753543 0.000000e+00 1744.0
30 TraesCS1B01G384900 chr1A 88.304 1026 101 13 984 1998 545851163 545850146 0.000000e+00 1212.0
31 TraesCS1B01G384900 chr1A 91.071 224 18 1 2573 2796 545753567 545753788 5.420000e-78 302.0
32 TraesCS1B01G384900 chr1A 93.617 188 12 0 3157 3344 545755479 545755666 7.060000e-72 281.0
33 TraesCS1B01G384900 chr1A 93.333 75 5 0 436 510 545751443 545751517 9.810000e-21 111.0
34 TraesCS1B01G384900 chr1A 92.593 54 4 0 768 821 545751762 545751815 9.950000e-11 78.7
35 TraesCS1B01G384900 chr1A 97.561 41 1 0 536 576 545751514 545751554 1.660000e-08 71.3
36 TraesCS1B01G384900 chr1A 100.000 28 0 0 344 371 545751418 545751445 6.000000e-03 52.8
37 TraesCS1B01G384900 chr7A 84.211 95 14 1 2838 2931 552950537 552950631 1.280000e-14 91.6
38 TraesCS1B01G384900 chr2B 85.882 85 12 0 2845 2929 514342161 514342245 1.280000e-14 91.6
39 TraesCS1B01G384900 chr2A 88.462 78 6 3 2855 2930 771885358 771885282 1.280000e-14 91.6
40 TraesCS1B01G384900 chr6A 82.075 106 18 1 2837 2942 169203303 169203407 4.600000e-14 89.8
41 TraesCS1B01G384900 chr6A 82.075 106 15 4 2840 2944 15768238 15768136 1.650000e-13 87.9
42 TraesCS1B01G384900 chr6B 82.474 97 17 0 2844 2940 551188220 551188316 5.940000e-13 86.1
43 TraesCS1B01G384900 chr6B 82.474 97 17 0 2844 2940 551443238 551443334 5.940000e-13 86.1
44 TraesCS1B01G384900 chr6B 82.474 97 17 0 2844 2940 551589717 551589813 5.940000e-13 86.1
45 TraesCS1B01G384900 chr6B 82.474 97 17 0 2844 2940 551665701 551665797 5.940000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G384900 chr1B 618195981 618199324 3343 False 6176.000000 6176 100.000000 1 3344 1 chr1B.!!$F1 3343
1 TraesCS1B01G384900 chr1B 618316577 618318681 2104 False 2451.000000 2451 88.432000 774 2793 1 chr1B.!!$F2 2019
2 TraesCS1B01G384900 chr1B 618697859 618698914 1055 True 1208.000000 1208 87.453000 1003 2052 1 chr1B.!!$R1 1049
3 TraesCS1B01G384900 chr1B 618907061 618908049 988 True 1190.000000 1190 88.388000 995 1989 1 chr1B.!!$R2 994
4 TraesCS1B01G384900 chr1B 618542134 618544624 2490 False 419.183333 1605 89.656500 31 2688 6 chr1B.!!$F4 2657
5 TraesCS1B01G384900 chr1B 618550026 618551976 1950 False 340.500000 531 90.066500 2680 3344 2 chr1B.!!$F5 664
6 TraesCS1B01G384900 chr1D 450756484 450757612 1128 True 1216.000000 1216 86.368000 1003 2119 1 chr1D.!!$R2 1116
7 TraesCS1B01G384900 chr1D 450738316 450744278 5962 False 665.200000 2150 87.774800 1 3344 5 chr1D.!!$F3 3343
8 TraesCS1B01G384900 chr1D 450576303 450582723 6420 False 605.600000 1812 87.165400 1 3344 5 chr1D.!!$F2 3343
9 TraesCS1B01G384900 chr1D 451028091 451028625 534 False 228.000000 313 89.081000 2926 3297 2 chr1D.!!$F4 371
10 TraesCS1B01G384900 chr1A 545850146 545851163 1017 True 1212.000000 1212 88.304000 984 1998 1 chr1A.!!$R1 1014
11 TraesCS1B01G384900 chr1A 545751418 545755666 4248 False 377.257143 1744 93.405714 344 3344 7 chr1A.!!$F1 3000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 221 0.233332 GCGCCAGATATTTCACTCGC 59.767 55.0 0.00 0.0 34.61 5.03 F
722 2710 0.300491 CATAATGGACCGCGTGTTCG 59.700 55.0 4.92 0.0 40.37 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 3652 0.606401 CGGTGGCCATCTCAACAACT 60.606 55.0 15.59 0.00 0.00 3.16 R
2720 4923 0.165295 TAGAAGTGCACGACGACGAG 59.835 55.0 15.32 7.39 42.66 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
209 221 0.233332 GCGCCAGATATTTCACTCGC 59.767 55.000 0.00 0.00 34.61 5.03
215 227 4.972440 GCCAGATATTTCACTCGCAATTTC 59.028 41.667 0.00 0.00 0.00 2.17
216 228 5.449041 GCCAGATATTTCACTCGCAATTTCA 60.449 40.000 0.00 0.00 0.00 2.69
219 231 6.635641 CAGATATTTCACTCGCAATTTCATGG 59.364 38.462 0.00 0.00 0.00 3.66
228 240 1.856629 CAATTTCATGGCAGGTCCCT 58.143 50.000 0.00 0.00 0.00 4.20
229 241 1.753073 CAATTTCATGGCAGGTCCCTC 59.247 52.381 0.00 0.00 0.00 4.30
248 274 7.206687 GTCCCTCAACAACATTTTCATTTACA 58.793 34.615 0.00 0.00 0.00 2.41
251 277 7.925483 CCCTCAACAACATTTTCATTTACAAGA 59.075 33.333 0.00 0.00 0.00 3.02
271 297 6.091169 ACAAGAAATGAACAACAAACTTGCTG 59.909 34.615 0.00 0.00 38.77 4.41
272 298 5.723295 AGAAATGAACAACAAACTTGCTGT 58.277 33.333 0.00 0.00 38.99 4.40
273 299 6.165577 AGAAATGAACAACAAACTTGCTGTT 58.834 32.000 10.22 10.22 46.58 3.16
277 303 4.782019 AACAACAAACTTGCTGTTCAGA 57.218 36.364 5.59 0.00 42.01 3.27
278 304 4.096732 ACAACAAACTTGCTGTTCAGAC 57.903 40.909 3.84 0.00 34.07 3.51
279 305 3.100817 CAACAAACTTGCTGTTCAGACG 58.899 45.455 3.84 0.00 38.03 4.18
280 306 1.064060 ACAAACTTGCTGTTCAGACGC 59.936 47.619 3.84 0.00 38.03 5.19
285 311 1.087202 TTGCTGTTCAGACGCGTTGT 61.087 50.000 15.53 0.00 0.00 3.32
287 313 1.068474 GCTGTTCAGACGCGTTGTAT 58.932 50.000 15.53 0.00 0.00 2.29
289 315 2.058798 CTGTTCAGACGCGTTGTATGT 58.941 47.619 15.53 0.00 40.69 2.29
305 331 7.010552 GCGTTGTATGTATTCTCTGTTCATTCT 59.989 37.037 0.00 0.00 0.00 2.40
311 337 5.645067 TGTATTCTCTGTTCATTCTTGGCTG 59.355 40.000 0.00 0.00 0.00 4.85
321 347 1.040339 TTCTTGGCTGCCGTTTTGGT 61.040 50.000 14.98 0.00 41.21 3.67
322 348 1.007387 CTTGGCTGCCGTTTTGGTC 60.007 57.895 14.98 0.00 41.21 4.02
323 349 2.731587 CTTGGCTGCCGTTTTGGTCG 62.732 60.000 14.98 0.00 41.21 4.79
324 350 3.284449 GGCTGCCGTTTTGGTCGT 61.284 61.111 1.35 0.00 41.21 4.34
327 353 2.018544 CTGCCGTTTTGGTCGTCAA 58.981 52.632 0.00 0.00 41.21 3.18
329 355 0.378962 TGCCGTTTTGGTCGTCAAAG 59.621 50.000 6.74 0.00 45.00 2.77
330 356 0.317519 GCCGTTTTGGTCGTCAAAGG 60.318 55.000 6.74 7.11 45.00 3.11
331 357 0.309612 CCGTTTTGGTCGTCAAAGGG 59.690 55.000 6.74 8.35 45.00 3.95
332 358 0.317519 CGTTTTGGTCGTCAAAGGGC 60.318 55.000 6.74 0.00 45.00 5.19
338 2215 1.275291 TGGTCGTCAAAGGGCTTCTAG 59.725 52.381 0.00 0.00 0.00 2.43
342 2219 2.168521 TCGTCAAAGGGCTTCTAGATGG 59.831 50.000 7.66 0.00 0.00 3.51
415 2292 0.811281 GCGGGCTTCAGCATAAAAGT 59.189 50.000 0.30 0.00 44.36 2.66
417 2294 2.083774 CGGGCTTCAGCATAAAAGTCA 58.916 47.619 0.30 0.00 44.36 3.41
418 2295 2.096496 CGGGCTTCAGCATAAAAGTCAG 59.904 50.000 0.30 0.00 44.36 3.51
425 2302 6.183360 GCTTCAGCATAAAAGTCAGAGTGTAG 60.183 42.308 0.00 0.00 41.59 2.74
436 2313 4.215827 AGTCAGAGTGTAGAAGTACCAACG 59.784 45.833 0.00 0.00 0.00 4.10
465 2342 0.472734 AGACCCAACTGACCAGCTCT 60.473 55.000 0.00 0.00 0.00 4.09
545 2422 1.748122 ATACGACTCGCGACCCAGT 60.748 57.895 3.71 0.13 44.57 4.00
578 2455 3.241995 CGAGTACGTAAATTGCTTGCTCC 60.242 47.826 0.00 0.00 34.56 4.70
579 2456 3.007635 AGTACGTAAATTGCTTGCTCCC 58.992 45.455 0.00 0.00 0.00 4.30
580 2457 1.173913 ACGTAAATTGCTTGCTCCCC 58.826 50.000 0.00 0.00 0.00 4.81
581 2458 1.271926 ACGTAAATTGCTTGCTCCCCT 60.272 47.619 0.00 0.00 0.00 4.79
582 2459 1.401905 CGTAAATTGCTTGCTCCCCTC 59.598 52.381 0.00 0.00 0.00 4.30
594 2471 1.003051 TCCCCTCCCCTCAAGCTAC 59.997 63.158 0.00 0.00 0.00 3.58
614 2491 1.137086 CCACCTTCCGAGAATCATCGT 59.863 52.381 0.00 0.00 41.12 3.73
637 2539 5.635700 GTGCCATTAGATAGAAATCCGAGAC 59.364 44.000 0.00 0.00 31.98 3.36
642 2544 9.277783 CCATTAGATAGAAATCCGAGACATTTT 57.722 33.333 0.00 0.00 31.98 1.82
664 2566 6.817765 TTTTTGCGAAAGACAGAGGATTAT 57.182 33.333 0.00 0.00 0.00 1.28
683 2665 2.171209 TTAAGCAGAGGCAGAGCGCA 62.171 55.000 11.47 0.00 45.17 6.09
702 2684 2.544486 GCAAAGCTTGGTCTTGTCAAGG 60.544 50.000 12.66 0.00 41.21 3.61
705 2687 1.202976 AGCTTGGTCTTGTCAAGGCAT 60.203 47.619 18.55 0.00 41.21 4.40
706 2688 2.040278 AGCTTGGTCTTGTCAAGGCATA 59.960 45.455 18.55 4.54 41.21 3.14
707 2689 2.819608 GCTTGGTCTTGTCAAGGCATAA 59.180 45.455 18.55 11.61 41.21 1.90
708 2690 3.445096 GCTTGGTCTTGTCAAGGCATAAT 59.555 43.478 18.55 0.00 41.21 1.28
709 2691 4.676196 GCTTGGTCTTGTCAAGGCATAATG 60.676 45.833 18.55 7.23 41.21 1.90
717 2705 1.095228 CAAGGCATAATGGACCGCGT 61.095 55.000 4.92 0.00 0.00 6.01
722 2710 0.300491 CATAATGGACCGCGTGTTCG 59.700 55.000 4.92 0.00 40.37 3.95
740 2728 2.032071 CACTCACCGTCCAACCCC 59.968 66.667 0.00 0.00 0.00 4.95
751 2739 2.275089 CAACCCCATCCATCGCCA 59.725 61.111 0.00 0.00 0.00 5.69
760 2748 0.977627 ATCCATCGCCACAGGAGTCA 60.978 55.000 0.00 0.00 34.40 3.41
763 2751 2.660064 ATCGCCACAGGAGTCACCC 61.660 63.158 0.00 0.00 40.05 4.61
765 2753 3.249189 GCCACAGGAGTCACCCCA 61.249 66.667 0.00 0.00 40.05 4.96
825 2835 1.686587 CTTCCCACGCCTTTTCCTTTT 59.313 47.619 0.00 0.00 0.00 2.27
845 2855 4.264638 GCGCACGCCAAACACCTT 62.265 61.111 0.30 0.00 34.56 3.50
846 2856 2.051345 CGCACGCCAAACACCTTC 60.051 61.111 0.00 0.00 0.00 3.46
847 2857 2.335011 GCACGCCAAACACCTTCC 59.665 61.111 0.00 0.00 0.00 3.46
848 2858 2.637025 CACGCCAAACACCTTCCG 59.363 61.111 0.00 0.00 0.00 4.30
929 2947 1.007387 GCTCACCCGCCACAAAAAG 60.007 57.895 0.00 0.00 0.00 2.27
950 2977 1.266718 GAACTCATCGCCACAAGCAAA 59.733 47.619 0.00 0.00 44.04 3.68
1113 3208 3.255379 GCGATCAAGTCCGCCGTC 61.255 66.667 0.00 0.00 45.06 4.79
1644 3739 3.440151 CGGATCGGGTACACGGAT 58.560 61.111 19.08 9.88 41.30 4.18
1657 3752 2.579201 CGGATGCCGTTCCTGAGT 59.421 61.111 0.00 0.00 42.73 3.41
1665 3760 1.562672 CCGTTCCTGAGTTCCCCCAT 61.563 60.000 0.00 0.00 0.00 4.00
1833 3934 4.742201 TCGCCCAAGAGCACGCTC 62.742 66.667 11.14 11.14 43.03 5.03
1983 4108 4.329545 GTGCTCTCCGGGCCAACA 62.330 66.667 4.39 0.00 0.00 3.33
1989 4114 4.697756 TCCGGGCCAACAGAAGCG 62.698 66.667 4.39 0.00 0.00 4.68
2024 4161 1.961277 CCAAGGTGACGACTGGCAC 60.961 63.158 0.00 0.00 0.00 5.01
2034 4171 3.883744 GACTGGCACCACCGTGGAG 62.884 68.421 24.80 17.39 40.96 3.86
2141 4293 0.315251 GCGGACGATGATGAGGATGA 59.685 55.000 0.00 0.00 0.00 2.92
2159 4311 3.887621 TGAATCAGTAGTAGGGCACAC 57.112 47.619 0.00 0.00 0.00 3.82
2186 4341 1.479573 CCAGCCCTCGGAGATTCTAGA 60.480 57.143 6.58 0.00 33.89 2.43
2197 4352 4.022416 CGGAGATTCTAGATTCTCACCAGG 60.022 50.000 31.23 17.97 38.75 4.45
2253 4417 6.545508 CAACAGAATCAGTAATGCAATCGAA 58.454 36.000 0.00 0.00 0.00 3.71
2256 4420 7.765307 ACAGAATCAGTAATGCAATCGAATTT 58.235 30.769 0.00 0.00 0.00 1.82
2378 4556 8.561738 TCCTAGAAAAATTAGGTTGCAACTAG 57.438 34.615 27.64 16.41 39.01 2.57
2399 4585 3.106407 GTCGCGTGGCTGTGAGTC 61.106 66.667 5.77 0.00 0.00 3.36
2400 4586 3.295273 TCGCGTGGCTGTGAGTCT 61.295 61.111 5.77 0.00 0.00 3.24
2446 4632 2.353406 GCATGAATTCACAAGCTTGCCT 60.353 45.455 26.27 4.91 32.77 4.75
2582 4782 1.410850 ATACATGGGTCCGGCAGAGG 61.411 60.000 0.00 0.00 0.00 3.69
2606 4806 2.278857 CCGACGAGGGAATGCGAG 60.279 66.667 0.00 0.00 35.97 5.03
2660 4860 1.207329 AGATTACTTCGCCAGGTGGAC 59.793 52.381 0.00 0.00 37.39 4.02
2739 4948 0.165295 CTCGTCGTCGTGCACTTCTA 59.835 55.000 16.19 0.00 38.33 2.10
2796 5005 3.733077 GCTGCTCCATTGCATGTTTCTAC 60.733 47.826 0.00 0.00 42.48 2.59
2797 5006 3.689347 TGCTCCATTGCATGTTTCTACT 58.311 40.909 0.00 0.00 38.12 2.57
2798 5007 4.842574 TGCTCCATTGCATGTTTCTACTA 58.157 39.130 0.00 0.00 38.12 1.82
2799 5008 4.635765 TGCTCCATTGCATGTTTCTACTAC 59.364 41.667 0.00 0.00 38.12 2.73
2801 5010 3.621268 TCCATTGCATGTTTCTACTACGC 59.379 43.478 0.00 0.00 0.00 4.42
2802 5011 3.373748 CCATTGCATGTTTCTACTACGCA 59.626 43.478 0.00 0.00 0.00 5.24
2803 5012 4.334443 CATTGCATGTTTCTACTACGCAC 58.666 43.478 0.00 0.00 0.00 5.34
2804 5013 3.313012 TGCATGTTTCTACTACGCACT 57.687 42.857 0.00 0.00 0.00 4.40
2806 5015 2.222819 GCATGTTTCTACTACGCACTGC 60.223 50.000 0.00 0.00 0.00 4.40
2864 6930 9.684448 AATACATACTTCGTCAGTCTCATAATG 57.316 33.333 0.00 0.00 36.88 1.90
2866 6932 8.221965 ACATACTTCGTCAGTCTCATAATGTA 57.778 34.615 0.00 0.00 36.88 2.29
2867 6933 8.683615 ACATACTTCGTCAGTCTCATAATGTAA 58.316 33.333 0.00 0.00 36.88 2.41
2868 6934 9.516314 CATACTTCGTCAGTCTCATAATGTAAA 57.484 33.333 0.00 0.00 36.88 2.01
2871 6937 6.864560 TCGTCAGTCTCATAATGTAAAACG 57.135 37.500 0.00 0.00 0.00 3.60
2872 6938 6.384224 TCGTCAGTCTCATAATGTAAAACGT 58.616 36.000 0.00 0.00 0.00 3.99
2873 6939 6.525628 TCGTCAGTCTCATAATGTAAAACGTC 59.474 38.462 0.00 0.00 0.00 4.34
2890 6956 9.224058 GTAAAACGTCTTTTAACACTAATGCAA 57.776 29.630 0.00 0.00 34.33 4.08
2892 6958 7.851822 AACGTCTTTTAACACTAATGCAATG 57.148 32.000 0.00 0.00 0.00 2.82
2894 6960 7.075741 ACGTCTTTTAACACTAATGCAATGTC 58.924 34.615 0.00 0.00 0.00 3.06
2896 6962 7.589587 CGTCTTTTAACACTAATGCAATGTCAA 59.410 33.333 0.00 0.00 0.00 3.18
2897 6963 9.243637 GTCTTTTAACACTAATGCAATGTCAAA 57.756 29.630 0.00 0.00 0.00 2.69
2921 6987 8.827177 AAAAACGTCTTACATTATGAGACAGA 57.173 30.769 12.46 0.91 42.74 3.41
2922 6988 8.827177 AAAACGTCTTACATTATGAGACAGAA 57.173 30.769 12.46 0.00 42.74 3.02
2924 6990 6.565234 ACGTCTTACATTATGAGACAGAAGG 58.435 40.000 12.46 0.00 42.74 3.46
2926 6992 6.915300 CGTCTTACATTATGAGACAGAAGGAG 59.085 42.308 12.46 0.00 42.74 3.69
2927 6993 7.415765 CGTCTTACATTATGAGACAGAAGGAGT 60.416 40.741 12.46 0.00 42.74 3.85
2929 6995 8.904834 TCTTACATTATGAGACAGAAGGAGTAC 58.095 37.037 0.00 0.00 0.00 2.73
2930 6996 8.589701 TTACATTATGAGACAGAAGGAGTACA 57.410 34.615 0.00 0.00 0.00 2.90
2976 8542 8.038944 AGTACTAAAACTGAGACACTTGTTTGA 58.961 33.333 0.00 0.00 33.61 2.69
2982 8548 5.674525 ACTGAGACACTTGTTTGAAGATGA 58.325 37.500 0.00 0.00 0.00 2.92
2990 8556 3.762407 TGTTTGAAGATGACGGGAGAA 57.238 42.857 0.00 0.00 0.00 2.87
3003 8623 4.191544 GACGGGAGAACATTGATCATCAA 58.808 43.478 1.59 1.59 41.09 2.57
3046 8666 4.623595 GTGAACCGTCTGAGAATCTTCTTC 59.376 45.833 0.00 0.00 37.73 2.87
3054 8674 5.585445 GTCTGAGAATCTTCTTCATGCATGT 59.415 40.000 25.43 4.14 37.73 3.21
3056 8676 5.742063 TGAGAATCTTCTTCATGCATGTCT 58.258 37.500 25.43 17.56 37.73 3.41
3057 8677 6.178324 TGAGAATCTTCTTCATGCATGTCTT 58.822 36.000 25.43 9.90 37.73 3.01
3073 8867 5.392703 GCATGTCTTGAAGAGCATTGATCAA 60.393 40.000 11.26 11.26 0.00 2.57
3241 9383 8.906636 TCTAACTAACTAATTAACGAGCACTG 57.093 34.615 0.00 0.00 0.00 3.66
3257 9399 2.685897 GCACTGGGTGTCTTGTTGTTTA 59.314 45.455 0.00 0.00 35.75 2.01
3322 9469 2.265182 AAATCGGGTGTGGTTGGCG 61.265 57.895 0.00 0.00 0.00 5.69
3323 9470 2.684192 AAATCGGGTGTGGTTGGCGA 62.684 55.000 0.00 0.00 0.00 5.54
3331 9478 1.299089 GTGGTTGGCGAACAGTTGC 60.299 57.895 13.86 0.00 33.27 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.296392 CGCACACCAGATTCCCTCA 59.704 57.895 0.00 0.00 0.00 3.86
40 41 1.450312 CCGCACACCAGATTCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
170 180 0.737715 GTCTGTCCTCGGCATCACAC 60.738 60.000 0.00 0.00 0.00 3.82
209 221 1.753073 GAGGGACCTGCCATGAAATTG 59.247 52.381 0.00 0.00 38.95 2.32
215 227 0.251297 TTGTTGAGGGACCTGCCATG 60.251 55.000 0.00 0.00 38.95 3.66
216 228 0.251341 GTTGTTGAGGGACCTGCCAT 60.251 55.000 0.00 0.00 38.95 4.40
219 231 1.620822 AATGTTGTTGAGGGACCTGC 58.379 50.000 0.00 0.00 0.00 4.85
248 274 6.651755 CAGCAAGTTTGTTGTTCATTTCTT 57.348 33.333 1.12 0.00 35.09 2.52
261 287 1.746760 GCGTCTGAACAGCAAGTTTG 58.253 50.000 0.00 0.00 41.51 2.93
262 288 0.304705 CGCGTCTGAACAGCAAGTTT 59.695 50.000 0.00 0.00 41.51 2.66
271 297 4.561606 AGAATACATACAACGCGTCTGAAC 59.438 41.667 14.44 0.00 0.00 3.18
272 298 4.740268 AGAATACATACAACGCGTCTGAA 58.260 39.130 14.44 0.00 0.00 3.02
273 299 4.095932 AGAGAATACATACAACGCGTCTGA 59.904 41.667 14.44 0.00 0.00 3.27
274 300 4.205181 CAGAGAATACATACAACGCGTCTG 59.795 45.833 14.44 15.70 0.00 3.51
275 301 4.142447 ACAGAGAATACATACAACGCGTCT 60.142 41.667 14.44 2.87 0.00 4.18
276 302 4.103357 ACAGAGAATACATACAACGCGTC 58.897 43.478 14.44 0.00 0.00 5.19
277 303 4.106029 ACAGAGAATACATACAACGCGT 57.894 40.909 5.58 5.58 0.00 6.01
278 304 4.561213 TGAACAGAGAATACATACAACGCG 59.439 41.667 3.53 3.53 0.00 6.01
279 305 6.589830 ATGAACAGAGAATACATACAACGC 57.410 37.500 0.00 0.00 0.00 4.84
280 306 8.412608 AGAATGAACAGAGAATACATACAACG 57.587 34.615 0.00 0.00 0.00 4.10
285 311 7.496920 CAGCCAAGAATGAACAGAGAATACATA 59.503 37.037 0.00 0.00 0.00 2.29
287 313 5.645067 CAGCCAAGAATGAACAGAGAATACA 59.355 40.000 0.00 0.00 0.00 2.29
289 315 4.637534 GCAGCCAAGAATGAACAGAGAATA 59.362 41.667 0.00 0.00 0.00 1.75
305 331 2.840066 CGACCAAAACGGCAGCCAA 61.840 57.895 13.30 0.00 39.03 4.52
311 337 0.317519 CCTTTGACGACCAAAACGGC 60.318 55.000 8.52 0.00 43.50 5.68
321 347 2.168521 CCATCTAGAAGCCCTTTGACGA 59.831 50.000 0.00 0.00 0.00 4.20
322 348 2.093447 ACCATCTAGAAGCCCTTTGACG 60.093 50.000 0.00 0.00 0.00 4.35
323 349 3.274288 CACCATCTAGAAGCCCTTTGAC 58.726 50.000 0.00 0.00 0.00 3.18
324 350 2.239654 CCACCATCTAGAAGCCCTTTGA 59.760 50.000 0.00 0.00 0.00 2.69
327 353 1.216990 CCCACCATCTAGAAGCCCTT 58.783 55.000 0.00 0.00 0.00 3.95
329 355 1.839894 CCCCACCATCTAGAAGCCC 59.160 63.158 0.00 0.00 0.00 5.19
330 356 1.149401 GCCCCACCATCTAGAAGCC 59.851 63.158 0.00 0.00 0.00 4.35
331 357 0.179034 CTGCCCCACCATCTAGAAGC 60.179 60.000 0.00 0.00 0.00 3.86
332 358 1.139853 GTCTGCCCCACCATCTAGAAG 59.860 57.143 0.00 0.00 0.00 2.85
338 2215 4.408821 TGCGTCTGCCCCACCATC 62.409 66.667 0.00 0.00 41.78 3.51
372 2249 2.567564 ATACTGTACGGTGGTGCGCC 62.568 60.000 17.87 10.11 0.00 6.53
373 2250 0.101040 TATACTGTACGGTGGTGCGC 59.899 55.000 17.87 0.00 0.00 6.09
374 2251 1.862815 GCTATACTGTACGGTGGTGCG 60.863 57.143 17.87 2.82 0.00 5.34
375 2252 1.849097 GCTATACTGTACGGTGGTGC 58.151 55.000 17.87 13.50 0.00 5.01
376 2253 1.268896 CCGCTATACTGTACGGTGGTG 60.269 57.143 17.87 12.72 40.77 4.17
377 2254 1.027357 CCGCTATACTGTACGGTGGT 58.973 55.000 17.87 8.51 40.77 4.16
378 2255 3.859650 CCGCTATACTGTACGGTGG 57.140 57.895 17.87 5.68 40.77 4.61
397 2274 2.083774 TGACTTTTATGCTGAAGCCCG 58.916 47.619 0.00 0.00 41.18 6.13
404 2281 6.870965 ACTTCTACACTCTGACTTTTATGCTG 59.129 38.462 0.00 0.00 0.00 4.41
405 2282 6.998802 ACTTCTACACTCTGACTTTTATGCT 58.001 36.000 0.00 0.00 0.00 3.79
415 2292 3.504906 CCGTTGGTACTTCTACACTCTGA 59.495 47.826 0.00 0.00 0.00 3.27
417 2294 3.255149 CACCGTTGGTACTTCTACACTCT 59.745 47.826 0.00 0.00 32.11 3.24
418 2295 3.572584 CACCGTTGGTACTTCTACACTC 58.427 50.000 0.00 0.00 32.11 3.51
425 2302 1.067071 CCTCTCCACCGTTGGTACTTC 60.067 57.143 0.00 0.00 44.35 3.01
436 2313 0.545548 AGTTGGGTCTCCTCTCCACC 60.546 60.000 0.00 0.00 0.00 4.61
465 2342 3.872603 AGCGGGTGCACCTGAACA 61.873 61.111 42.58 0.00 45.36 3.18
545 2422 3.081741 CGTACTCGTCAAAGTCGCA 57.918 52.632 0.00 0.00 0.00 5.10
578 2455 1.306997 TGGTAGCTTGAGGGGAGGG 60.307 63.158 0.00 0.00 0.00 4.30
579 2456 1.627297 GGTGGTAGCTTGAGGGGAGG 61.627 65.000 0.00 0.00 0.00 4.30
580 2457 0.618968 AGGTGGTAGCTTGAGGGGAG 60.619 60.000 0.00 0.00 0.00 4.30
581 2458 0.178873 AAGGTGGTAGCTTGAGGGGA 60.179 55.000 0.00 0.00 34.21 4.81
582 2459 0.253327 GAAGGTGGTAGCTTGAGGGG 59.747 60.000 0.00 0.00 35.86 4.79
594 2471 1.137086 ACGATGATTCTCGGAAGGTGG 59.863 52.381 0.00 0.00 42.88 4.61
614 2491 5.304357 TGTCTCGGATTTCTATCTAATGGCA 59.696 40.000 0.00 0.00 0.00 4.92
642 2544 6.817765 AATAATCCTCTGTCTTTCGCAAAA 57.182 33.333 0.00 0.00 0.00 2.44
643 2545 7.414098 GCTTAATAATCCTCTGTCTTTCGCAAA 60.414 37.037 0.00 0.00 0.00 3.68
644 2546 6.037172 GCTTAATAATCCTCTGTCTTTCGCAA 59.963 38.462 0.00 0.00 0.00 4.85
645 2547 5.523916 GCTTAATAATCCTCTGTCTTTCGCA 59.476 40.000 0.00 0.00 0.00 5.10
646 2548 5.523916 TGCTTAATAATCCTCTGTCTTTCGC 59.476 40.000 0.00 0.00 0.00 4.70
647 2549 6.980978 TCTGCTTAATAATCCTCTGTCTTTCG 59.019 38.462 0.00 0.00 0.00 3.46
649 2551 7.278875 CCTCTGCTTAATAATCCTCTGTCTTT 58.721 38.462 0.00 0.00 0.00 2.52
650 2552 6.687647 GCCTCTGCTTAATAATCCTCTGTCTT 60.688 42.308 0.00 0.00 33.53 3.01
651 2553 5.221621 GCCTCTGCTTAATAATCCTCTGTCT 60.222 44.000 0.00 0.00 33.53 3.41
652 2554 4.994217 GCCTCTGCTTAATAATCCTCTGTC 59.006 45.833 0.00 0.00 33.53 3.51
653 2555 4.410228 TGCCTCTGCTTAATAATCCTCTGT 59.590 41.667 0.00 0.00 38.71 3.41
654 2556 4.965814 TGCCTCTGCTTAATAATCCTCTG 58.034 43.478 0.00 0.00 38.71 3.35
656 2558 5.220710 TCTGCCTCTGCTTAATAATCCTC 57.779 43.478 0.00 0.00 38.71 3.71
657 2559 4.504689 GCTCTGCCTCTGCTTAATAATCCT 60.505 45.833 0.00 0.00 38.71 3.24
658 2560 3.750652 GCTCTGCCTCTGCTTAATAATCC 59.249 47.826 0.00 0.00 38.71 3.01
659 2561 3.431572 CGCTCTGCCTCTGCTTAATAATC 59.568 47.826 0.00 0.00 38.71 1.75
660 2562 3.397482 CGCTCTGCCTCTGCTTAATAAT 58.603 45.455 0.00 0.00 38.71 1.28
662 2564 1.539065 GCGCTCTGCCTCTGCTTAATA 60.539 52.381 0.00 0.00 38.71 0.98
663 2565 0.813210 GCGCTCTGCCTCTGCTTAAT 60.813 55.000 0.00 0.00 38.71 1.40
664 2566 1.448540 GCGCTCTGCCTCTGCTTAA 60.449 57.895 0.00 0.00 38.71 1.85
683 2665 1.683385 GCCTTGACAAGACCAAGCTTT 59.317 47.619 16.99 0.00 39.60 3.51
695 2677 2.016604 GCGGTCCATTATGCCTTGACA 61.017 52.381 2.75 0.00 0.00 3.58
702 2684 0.027586 GAACACGCGGTCCATTATGC 59.972 55.000 12.47 0.00 0.00 3.14
705 2687 2.095847 GCGAACACGCGGTCCATTA 61.096 57.895 12.47 0.00 42.84 1.90
706 2688 3.419759 GCGAACACGCGGTCCATT 61.420 61.111 12.47 0.00 42.84 3.16
717 2705 2.028484 GGACGGTGAGTGCGAACA 59.972 61.111 0.00 0.00 0.00 3.18
722 2710 2.668550 GGGTTGGACGGTGAGTGC 60.669 66.667 0.00 0.00 41.99 4.40
740 2728 0.531532 GACTCCTGTGGCGATGGATG 60.532 60.000 0.00 0.00 0.00 3.51
751 2739 3.626924 GCGTGGGGTGACTCCTGT 61.627 66.667 1.86 0.00 36.25 4.00
787 2775 1.035139 AGCAAGCTGTTTGGGTTCTG 58.965 50.000 6.38 0.00 37.26 3.02
825 2835 4.599434 GTGTTTGGCGTGCGCGAA 62.599 61.111 26.19 6.79 43.06 4.70
844 2854 4.023536 GCAAGTTTAGAACATGGAACGGAA 60.024 41.667 0.00 0.00 31.17 4.30
845 2855 3.500680 GCAAGTTTAGAACATGGAACGGA 59.499 43.478 0.00 0.00 31.17 4.69
846 2856 3.252215 TGCAAGTTTAGAACATGGAACGG 59.748 43.478 0.00 0.00 31.17 4.44
847 2857 4.481930 TGCAAGTTTAGAACATGGAACG 57.518 40.909 0.00 0.00 31.17 3.95
848 2858 6.681777 AGATTGCAAGTTTAGAACATGGAAC 58.318 36.000 4.94 0.00 41.79 3.62
929 2947 0.955428 TGCTTGTGGCGATGAGTTCC 60.955 55.000 0.00 0.00 45.43 3.62
950 2977 1.003464 GCTGGTGGCAATTGGGATTTT 59.997 47.619 7.72 0.00 41.35 1.82
1000 3095 1.805254 GCGTCCATTGCTTGCTCAT 59.195 52.632 0.00 0.00 0.00 2.90
1224 3319 0.805614 CGAACTCGAGGAAGAGCTGA 59.194 55.000 18.41 0.00 41.77 4.26
1557 3652 0.606401 CGGTGGCCATCTCAACAACT 60.606 55.000 15.59 0.00 0.00 3.16
1644 3739 2.747686 GGGAACTCAGGAACGGCA 59.252 61.111 0.00 0.00 0.00 5.69
1657 3752 2.770130 GGACAGCCAATGGGGGAA 59.230 61.111 0.00 0.00 37.04 3.97
1684 3779 0.607489 CACCTGGCCAAGAAGTCCTG 60.607 60.000 8.77 0.00 0.00 3.86
1788 3883 1.743252 GCTCTTCACGGCTTCTGGG 60.743 63.158 0.00 0.00 0.00 4.45
1833 3934 2.125552 TCCCAGAATGCAGCGTCG 60.126 61.111 0.00 0.00 31.97 5.12
1839 3940 0.904865 ACTCCGACTCCCAGAATGCA 60.905 55.000 0.00 0.00 31.97 3.96
2034 4171 1.625616 CGTCACTGGTGATAACGTCC 58.374 55.000 6.71 0.00 42.18 4.79
2039 4176 1.893137 ACTCTGCGTCACTGGTGATAA 59.107 47.619 6.71 0.00 42.18 1.75
2125 4277 4.880759 ACTGATTCATCCTCATCATCGTC 58.119 43.478 0.00 0.00 0.00 4.20
2141 4293 3.961408 CCTAGTGTGCCCTACTACTGATT 59.039 47.826 0.00 0.00 0.00 2.57
2186 4341 3.840666 ACATGACACTACCTGGTGAGAAT 59.159 43.478 10.23 0.00 40.13 2.40
2253 4417 4.274602 TGCTTTGGCATGATGAACAAAT 57.725 36.364 13.46 0.00 44.28 2.32
2286 4451 2.683867 GAGAAACAGAGGAGTAGCGCTA 59.316 50.000 14.45 14.45 0.00 4.26
2293 4458 2.603021 TGAGCAGAGAAACAGAGGAGT 58.397 47.619 0.00 0.00 0.00 3.85
2397 4583 2.229062 TCAGTCCATCGAAGTCACAGAC 59.771 50.000 0.00 0.00 0.00 3.51
2398 4584 2.514803 TCAGTCCATCGAAGTCACAGA 58.485 47.619 0.00 0.00 0.00 3.41
2399 4585 3.303881 TTCAGTCCATCGAAGTCACAG 57.696 47.619 0.00 0.00 0.00 3.66
2400 4586 3.744238 TTTCAGTCCATCGAAGTCACA 57.256 42.857 0.00 0.00 0.00 3.58
2446 4632 1.218047 CGACTCCATCCTTTCCGCA 59.782 57.895 0.00 0.00 0.00 5.69
2531 4722 1.279840 GTTCTTGACCGTGCAGCAC 59.720 57.895 16.21 16.21 0.00 4.40
2558 4750 1.677552 CCGGACCCATGTATAGCCC 59.322 63.158 0.00 0.00 0.00 5.19
2601 4801 1.214367 GTGTCGAAAAAGGTCTCGCA 58.786 50.000 0.00 0.00 35.04 5.10
2606 4806 1.595794 TCGCTTGTGTCGAAAAAGGTC 59.404 47.619 0.00 0.00 32.53 3.85
2660 4860 2.281345 GAGGGCGCTGGATGGATG 60.281 66.667 8.56 0.00 0.00 3.51
2683 4886 3.184683 GCAGCGGCGAGAAGACAG 61.185 66.667 12.98 0.00 0.00 3.51
2718 4921 2.453773 GAAGTGCACGACGACGAGGA 62.454 60.000 15.32 4.28 42.66 3.71
2719 4922 2.050351 AAGTGCACGACGACGAGG 60.050 61.111 15.32 6.81 42.66 4.63
2720 4923 0.165295 TAGAAGTGCACGACGACGAG 59.835 55.000 15.32 7.39 42.66 4.18
2721 4924 0.165295 CTAGAAGTGCACGACGACGA 59.835 55.000 15.32 0.00 42.66 4.20
2722 4925 0.165295 TCTAGAAGTGCACGACGACG 59.835 55.000 12.01 5.58 45.75 5.12
2723 4926 2.442424 GATCTAGAAGTGCACGACGAC 58.558 52.381 12.01 2.61 0.00 4.34
2796 5005 4.514577 CGGGGGAGCAGTGCGTAG 62.515 72.222 10.00 0.00 0.00 3.51
2801 5010 0.323629 TTTAAGACGGGGGAGCAGTG 59.676 55.000 0.00 0.00 0.00 3.66
2802 5011 1.061546 TTTTAAGACGGGGGAGCAGT 58.938 50.000 0.00 0.00 0.00 4.40
2803 5012 2.017049 CATTTTAAGACGGGGGAGCAG 58.983 52.381 0.00 0.00 0.00 4.24
2804 5013 1.631388 TCATTTTAAGACGGGGGAGCA 59.369 47.619 0.00 0.00 0.00 4.26
2806 5015 3.270877 CACTCATTTTAAGACGGGGGAG 58.729 50.000 0.00 0.00 0.00 4.30
2846 6912 7.061905 ACGTTTTACATTATGAGACTGACGAAG 59.938 37.037 0.00 0.00 0.00 3.79
2849 6915 6.527023 AGACGTTTTACATTATGAGACTGACG 59.473 38.462 0.00 4.47 0.00 4.35
2850 6916 7.813852 AGACGTTTTACATTATGAGACTGAC 57.186 36.000 0.00 0.00 0.00 3.51
2851 6917 8.827177 AAAGACGTTTTACATTATGAGACTGA 57.173 30.769 0.00 0.00 0.00 3.41
2863 6929 8.396390 TGCATTAGTGTTAAAAGACGTTTTACA 58.604 29.630 2.27 2.27 37.76 2.41
2864 6930 8.770850 TGCATTAGTGTTAAAAGACGTTTTAC 57.229 30.769 0.00 0.00 37.76 2.01
2866 6932 8.751335 CATTGCATTAGTGTTAAAAGACGTTTT 58.249 29.630 0.00 0.00 39.31 2.43
2867 6933 7.918562 ACATTGCATTAGTGTTAAAAGACGTTT 59.081 29.630 0.00 0.00 0.00 3.60
2868 6934 7.422399 ACATTGCATTAGTGTTAAAAGACGTT 58.578 30.769 0.00 0.00 0.00 3.99
2869 6935 6.966021 ACATTGCATTAGTGTTAAAAGACGT 58.034 32.000 0.00 0.00 0.00 4.34
2871 6937 8.795786 TTGACATTGCATTAGTGTTAAAAGAC 57.204 30.769 0.00 0.00 28.26 3.01
2872 6938 9.809096 TTTTGACATTGCATTAGTGTTAAAAGA 57.191 25.926 14.68 2.60 38.57 2.52
2896 6962 8.827177 TCTGTCTCATAATGTAAGACGTTTTT 57.173 30.769 0.00 0.00 41.84 1.94
2897 6963 8.827177 TTCTGTCTCATAATGTAAGACGTTTT 57.173 30.769 0.00 0.00 41.84 2.43
2899 6965 7.036220 CCTTCTGTCTCATAATGTAAGACGTT 58.964 38.462 0.00 0.00 41.84 3.99
2900 6966 6.377429 TCCTTCTGTCTCATAATGTAAGACGT 59.623 38.462 0.00 0.00 41.84 4.34
2901 6967 6.796426 TCCTTCTGTCTCATAATGTAAGACG 58.204 40.000 0.00 0.00 41.84 4.18
2906 6972 8.467598 GTTGTACTCCTTCTGTCTCATAATGTA 58.532 37.037 0.00 0.00 0.00 2.29
2910 6976 7.540474 AAGTTGTACTCCTTCTGTCTCATAA 57.460 36.000 0.00 0.00 0.00 1.90
2911 6977 7.540474 AAAGTTGTACTCCTTCTGTCTCATA 57.460 36.000 0.00 0.00 0.00 2.15
2913 6979 5.871396 AAAGTTGTACTCCTTCTGTCTCA 57.129 39.130 0.00 0.00 0.00 3.27
2914 6980 9.522804 CATATAAAGTTGTACTCCTTCTGTCTC 57.477 37.037 0.00 0.00 0.00 3.36
2916 6982 9.871238 TTCATATAAAGTTGTACTCCTTCTGTC 57.129 33.333 0.00 0.00 0.00 3.51
2947 7013 6.979238 ACAAGTGTCTCAGTTTTAGTACTGTC 59.021 38.462 5.39 0.00 44.62 3.51
2949 7015 7.772332 AACAAGTGTCTCAGTTTTAGTACTG 57.228 36.000 5.39 0.00 45.46 2.74
2951 7017 8.193250 TCAAACAAGTGTCTCAGTTTTAGTAC 57.807 34.615 0.00 0.00 32.34 2.73
2952 7018 8.780846 TTCAAACAAGTGTCTCAGTTTTAGTA 57.219 30.769 0.00 0.00 32.34 1.82
2954 7020 7.974675 TCTTCAAACAAGTGTCTCAGTTTTAG 58.025 34.615 0.00 0.00 32.34 1.85
2971 8537 3.399330 TGTTCTCCCGTCATCTTCAAAC 58.601 45.455 0.00 0.00 0.00 2.93
2976 8542 3.981071 TCAATGTTCTCCCGTCATCTT 57.019 42.857 0.00 0.00 0.00 2.40
2982 8548 3.912496 TGATGATCAATGTTCTCCCGT 57.088 42.857 0.00 0.00 0.00 5.28
3046 8666 4.105486 CAATGCTCTTCAAGACATGCATG 58.895 43.478 25.09 25.09 34.95 4.06
3054 8674 5.065602 CCGAATTGATCAATGCTCTTCAAGA 59.934 40.000 21.39 0.00 32.13 3.02
3056 8676 4.439153 GCCGAATTGATCAATGCTCTTCAA 60.439 41.667 21.39 0.00 33.06 2.69
3057 8677 3.065786 GCCGAATTGATCAATGCTCTTCA 59.934 43.478 21.39 0.00 0.00 3.02
3241 9383 5.310451 TCCTACATAAACAACAAGACACCC 58.690 41.667 0.00 0.00 0.00 4.61
3257 9399 1.141881 CGCTTCGTGGCTCCTACAT 59.858 57.895 0.00 0.00 0.00 2.29
3322 9469 1.197721 CAATCTCGGTGGCAACTGTTC 59.802 52.381 0.00 0.00 34.03 3.18
3323 9470 1.238439 CAATCTCGGTGGCAACTGTT 58.762 50.000 0.00 0.00 34.03 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.