Multiple sequence alignment - TraesCS1B01G384600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G384600 chr1B 100.000 8685 0 0 1 8685 617831653 617822969 0.000000e+00 16039.0
1 TraesCS1B01G384600 chr1B 83.485 551 78 12 136 683 312028836 312029376 1.300000e-137 501.0
2 TraesCS1B01G384600 chr1B 95.122 205 6 4 2912 3114 33923263 33923061 3.910000e-83 320.0
3 TraesCS1B01G384600 chr1B 86.792 106 11 1 778 880 575641430 575641535 1.980000e-21 115.0
4 TraesCS1B01G384600 chr1B 85.849 106 12 1 778 880 664305567 664305672 9.220000e-20 110.0
5 TraesCS1B01G384600 chr1A 92.160 5689 251 77 3112 8685 545533067 545527459 0.000000e+00 7854.0
6 TraesCS1B01G384600 chr1A 95.813 836 28 4 2097 2931 545533876 545533047 0.000000e+00 1343.0
7 TraesCS1B01G384600 chr1A 93.020 831 42 7 909 1732 545534713 545533892 0.000000e+00 1199.0
8 TraesCS1B01G384600 chr1A 85.577 104 12 2 780 880 558945928 558946031 1.190000e-18 106.0
9 TraesCS1B01G384600 chr1D 97.522 3470 67 4 3112 6566 450229730 450226265 0.000000e+00 5914.0
10 TraesCS1B01G384600 chr1D 92.051 1711 83 19 6569 8234 450226104 450224402 0.000000e+00 2357.0
11 TraesCS1B01G384600 chr1D 96.269 1233 33 7 908 2134 450231671 450230446 0.000000e+00 2010.0
12 TraesCS1B01G384600 chr1D 95.973 745 23 4 2189 2931 450230449 450229710 0.000000e+00 1203.0
13 TraesCS1B01G384600 chr1D 90.691 752 60 7 136 885 450232516 450231773 0.000000e+00 992.0
14 TraesCS1B01G384600 chr1D 96.222 450 12 3 8237 8685 450224365 450223920 0.000000e+00 732.0
15 TraesCS1B01G384600 chr1D 95.588 136 4 2 1 135 450232696 450232562 5.280000e-52 217.0
16 TraesCS1B01G384600 chr4A 83.574 554 78 10 136 686 599912842 599912299 2.800000e-139 507.0
17 TraesCS1B01G384600 chr4A 83.273 550 79 6 136 683 715709625 715709087 2.180000e-135 494.0
18 TraesCS1B01G384600 chr4A 95.098 204 4 5 2932 3130 317089624 317089826 5.060000e-82 316.0
19 TraesCS1B01G384600 chr4A 84.173 139 17 5 1 135 715891211 715891348 7.080000e-26 130.0
20 TraesCS1B01G384600 chr4A 81.818 143 17 5 1 135 715890989 715891130 2.560000e-20 111.0
21 TraesCS1B01G384600 chr4B 82.909 550 83 8 136 682 611689465 611688924 1.310000e-132 484.0
22 TraesCS1B01G384600 chr4B 97.143 35 0 1 57 90 611689580 611689546 3.390000e-04 58.4
23 TraesCS1B01G384600 chr4D 83.431 513 70 11 136 646 261077807 261078306 6.140000e-126 462.0
24 TraesCS1B01G384600 chr6D 81.769 554 86 13 136 683 19355669 19355125 4.780000e-122 449.0
25 TraesCS1B01G384600 chr6D 85.586 111 8 5 5 107 19355965 19355855 9.220000e-20 110.0
26 TraesCS1B01G384600 chr2D 82.443 524 82 7 136 656 620382094 620382610 4.780000e-122 449.0
27 TraesCS1B01G384600 chr5D 82.846 513 72 12 136 646 47328270 47328768 6.190000e-121 446.0
28 TraesCS1B01G384600 chr5D 95.500 200 5 4 2932 3128 50386171 50385973 5.060000e-82 316.0
29 TraesCS1B01G384600 chr5A 97.396 192 3 1 2932 3123 596662164 596662353 8.410000e-85 326.0
30 TraesCS1B01G384600 chr5A 83.516 91 12 3 2 91 189011484 189011396 2.010000e-11 82.4
31 TraesCS1B01G384600 chr7B 96.891 193 5 1 2932 3124 529951840 529951649 1.090000e-83 322.0
32 TraesCS1B01G384600 chr7B 82.243 107 16 3 778 881 334801463 334801569 1.200000e-13 89.8
33 TraesCS1B01G384600 chr7A 96.891 193 3 3 2932 3124 554383133 554383322 3.910000e-83 320.0
34 TraesCS1B01G384600 chr7A 94.258 209 10 2 2932 3140 684095224 684095430 1.410000e-82 318.0
35 TraesCS1B01G384600 chr7A 91.518 224 15 4 2932 3154 448258054 448258274 1.100000e-78 305.0
36 TraesCS1B01G384600 chr6B 96.891 193 3 3 2926 3117 171060964 171060774 3.910000e-83 320.0
37 TraesCS1B01G384600 chr2B 86.792 106 11 2 778 880 631140138 631140243 1.980000e-21 115.0
38 TraesCS1B01G384600 chr2B 85.047 107 11 3 778 881 90026637 90026533 4.290000e-18 104.0
39 TraesCS1B01G384600 chr3D 86.538 104 12 1 778 879 382506076 382505973 7.130000e-21 113.0
40 TraesCS1B01G384600 chr2A 84.158 101 13 3 778 875 660292346 660292446 2.580000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G384600 chr1B 617822969 617831653 8684 True 16039.000000 16039 100.000000 1 8685 1 chr1B.!!$R2 8684
1 TraesCS1B01G384600 chr1B 312028836 312029376 540 False 501.000000 501 83.485000 136 683 1 chr1B.!!$F1 547
2 TraesCS1B01G384600 chr1A 545527459 545534713 7254 True 3465.333333 7854 93.664333 909 8685 3 chr1A.!!$R1 7776
3 TraesCS1B01G384600 chr1D 450223920 450232696 8776 True 1917.857143 5914 94.902286 1 8685 7 chr1D.!!$R1 8684
4 TraesCS1B01G384600 chr4A 599912299 599912842 543 True 507.000000 507 83.574000 136 686 1 chr4A.!!$R1 550
5 TraesCS1B01G384600 chr4A 715709087 715709625 538 True 494.000000 494 83.273000 136 683 1 chr4A.!!$R2 547
6 TraesCS1B01G384600 chr4B 611688924 611689580 656 True 271.200000 484 90.026000 57 682 2 chr4B.!!$R1 625
7 TraesCS1B01G384600 chr6D 19355125 19355965 840 True 279.500000 449 83.677500 5 683 2 chr6D.!!$R1 678
8 TraesCS1B01G384600 chr2D 620382094 620382610 516 False 449.000000 449 82.443000 136 656 1 chr2D.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 970 0.179145 GTCACGTTCCCGTCGATGAT 60.179 55.0 6.11 0.00 46.28 2.45 F
1475 1732 0.392998 ATCAATCTCGGTTGGCGCTT 60.393 50.0 7.64 0.00 0.00 4.68 F
1892 2155 0.930310 CTTGGACACACTCACACACG 59.070 55.0 0.00 0.00 0.00 4.49 F
2966 3231 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.80 4.35 F
2990 3255 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.0 0.00 0.00 0.00 2.69 F
2999 3264 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.0 0.00 0.00 35.79 3.53 F
3046 3311 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.0 0.00 0.00 0.00 4.51 F
4624 4896 0.394192 CGGATTGCTAGGAGATGGCA 59.606 55.0 0.00 0.00 44.70 4.92 F
6013 6294 0.250901 GAAGCCAAGTCCAGCTCCAA 60.251 55.0 0.00 0.00 38.74 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 2106 0.035598 TCCCCTTCACGATTTGCGAA 59.964 50.000 0.0 0.00 44.57 4.70 R
2960 3225 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.0 0.00 44.78 4.85 R
2980 3245 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.0 0.00 0.00 4.94 R
4953 5225 0.824109 TGTCTCCATGACCTAAGCGG 59.176 55.000 0.0 0.00 44.75 5.52 R
5232 5504 5.788533 CCCCATACCCCAAGTATATACTTCA 59.211 44.000 22.6 8.46 44.19 3.02 R
5331 5603 5.353123 ACCACATGCTATACTTTTAACGTGG 59.647 40.000 0.0 0.00 44.49 4.94 R
5609 5881 9.590088 CACTCTTTTTGTTATTAAACGGACTAC 57.410 33.333 0.0 0.00 38.53 2.73 R
6811 7267 0.950836 TTATTTCATGCATCCCGCCG 59.049 50.000 0.0 0.00 41.33 6.46 R
8112 8640 0.035056 CAAGGGAGGGCTCGTTTCAT 60.035 55.000 0.0 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 236 4.976540 AATATGTTAGGAGGCCCTGTAC 57.023 45.455 0.00 0.00 44.15 2.90
120 242 0.412244 AGGAGGCCCTGTACTGTACA 59.588 55.000 18.77 18.77 42.42 2.90
143 310 3.328382 TTTTCTACAGACCATGACCCG 57.672 47.619 0.00 0.00 0.00 5.28
161 328 1.000866 GAAAGGCCCCATCCAGCTT 59.999 57.895 0.00 0.00 0.00 3.74
303 472 5.819991 AGCCACTTCAAGAATCAAGGAATA 58.180 37.500 0.00 0.00 0.00 1.75
304 473 5.884792 AGCCACTTCAAGAATCAAGGAATAG 59.115 40.000 0.00 0.00 0.00 1.73
305 474 5.882557 GCCACTTCAAGAATCAAGGAATAGA 59.117 40.000 0.00 0.00 0.00 1.98
306 475 6.038050 GCCACTTCAAGAATCAAGGAATAGAG 59.962 42.308 0.00 0.00 0.00 2.43
338 507 6.605594 AGCGAAGGAATTAAATGGATTTGGTA 59.394 34.615 0.00 0.00 0.00 3.25
359 529 5.587844 GGTATAGCATGGCTAATTGGATCTG 59.412 44.000 1.63 0.00 44.62 2.90
500 675 5.045869 AGTTAATCTTCGGGAGTCCATGAAA 60.046 40.000 12.30 6.21 0.00 2.69
511 686 5.278315 GGGAGTCCATGAAACTTGTGTTAAC 60.278 44.000 12.30 0.00 34.96 2.01
514 689 6.560711 AGTCCATGAAACTTGTGTTAACAAC 58.439 36.000 10.51 5.61 41.41 3.32
591 767 2.747177 ACCTCGACATGTGAATCCCTA 58.253 47.619 1.15 0.00 0.00 3.53
660 836 3.283751 ACGTTTTGGTGGAGATGTCAAA 58.716 40.909 0.00 0.00 0.00 2.69
675 851 7.770897 GGAGATGTCAAATACTTATCCTGTTGT 59.229 37.037 0.00 0.00 39.43 3.32
713 889 7.110043 AGTACTTAGGAACAATGGTAGTAGC 57.890 40.000 0.00 0.00 0.00 3.58
726 903 5.685520 TGGTAGTAGCAACCAATATGTGA 57.314 39.130 0.00 0.00 43.99 3.58
730 907 7.713507 TGGTAGTAGCAACCAATATGTGATTAC 59.286 37.037 0.00 0.00 43.99 1.89
733 910 8.158169 AGTAGCAACCAATATGTGATTACATG 57.842 34.615 13.08 0.00 46.63 3.21
741 918 8.413229 ACCAATATGTGATTACATGGTTAAAGC 58.587 33.333 13.08 0.00 46.63 3.51
753 930 5.880332 ACATGGTTAAAGCGACAGTGATATT 59.120 36.000 0.00 0.00 0.00 1.28
754 931 6.374333 ACATGGTTAAAGCGACAGTGATATTT 59.626 34.615 0.00 0.00 0.00 1.40
758 935 6.128117 GGTTAAAGCGACAGTGATATTTCCAA 60.128 38.462 0.00 0.00 0.00 3.53
759 936 7.415206 GGTTAAAGCGACAGTGATATTTCCAAT 60.415 37.037 0.00 0.00 0.00 3.16
760 937 5.490139 AAGCGACAGTGATATTTCCAATG 57.510 39.130 0.00 0.00 35.92 2.82
762 939 3.313526 GCGACAGTGATATTTCCAATGCT 59.686 43.478 0.00 0.00 33.43 3.79
763 940 4.553547 GCGACAGTGATATTTCCAATGCTC 60.554 45.833 0.00 0.00 33.43 4.26
771 948 2.397044 TTTCCAATGCTCCAGGGTTT 57.603 45.000 0.00 0.00 0.00 3.27
785 962 1.150827 GGGTTTAAGTCACGTTCCCG 58.849 55.000 0.00 0.00 40.83 5.14
793 970 0.179145 GTCACGTTCCCGTCGATGAT 60.179 55.000 6.11 0.00 46.28 2.45
798 975 0.460311 GTTCCCGTCGATGATGAGGT 59.540 55.000 6.11 0.00 0.00 3.85
806 983 1.688735 TCGATGATGAGGTGCCTAAGG 59.311 52.381 0.00 0.00 0.00 2.69
831 1008 7.707035 GGTGACTTCGTAAATCTCAAGATATGT 59.293 37.037 0.00 0.00 33.73 2.29
849 1026 0.522180 GTCGGCTCAGTCTCTCGAAA 59.478 55.000 0.00 0.00 0.00 3.46
852 1029 3.014623 TCGGCTCAGTCTCTCGAAAATA 58.985 45.455 0.00 0.00 0.00 1.40
860 1037 6.730175 TCAGTCTCTCGAAAATACTCATAGC 58.270 40.000 0.00 0.00 0.00 2.97
861 1038 5.623264 CAGTCTCTCGAAAATACTCATAGCG 59.377 44.000 0.00 0.00 0.00 4.26
872 1049 2.305009 ACTCATAGCGGTAGGGTGTAC 58.695 52.381 6.44 0.00 0.00 2.90
881 1058 1.885887 GGTAGGGTGTACGTGTGTGTA 59.114 52.381 0.00 0.00 0.00 2.90
890 1067 2.656137 CGTGTGTGTACGTGTGTGT 58.344 52.632 0.00 0.00 39.13 3.72
891 1068 1.825077 CGTGTGTGTACGTGTGTGTA 58.175 50.000 0.00 0.00 39.13 2.90
892 1069 1.513994 CGTGTGTGTACGTGTGTGTAC 59.486 52.381 0.00 0.00 43.95 2.90
900 1077 1.271549 CGTGTGTGTACGTGTGTGC 59.728 57.895 0.00 0.00 39.13 4.57
901 1078 1.143373 CGTGTGTGTACGTGTGTGCT 61.143 55.000 0.00 0.00 39.13 4.40
902 1079 0.575390 GTGTGTGTACGTGTGTGCTC 59.425 55.000 0.00 0.00 0.00 4.26
903 1080 0.528901 TGTGTGTACGTGTGTGCTCC 60.529 55.000 0.00 0.00 0.00 4.70
904 1081 0.528901 GTGTGTACGTGTGTGCTCCA 60.529 55.000 0.00 0.00 0.00 3.86
906 1083 0.944311 GTGTACGTGTGTGCTCCAGG 60.944 60.000 0.00 0.00 0.00 4.45
933 1189 6.872670 TTTTTGTTTGACGTTCAACCATAC 57.127 33.333 7.99 0.00 35.89 2.39
946 1203 3.005261 TCAACCATACGCATGCAGTTTTT 59.995 39.130 19.57 0.00 0.00 1.94
959 1216 4.054671 TGCAGTTTTTAAAAATGGGAGCG 58.945 39.130 17.50 2.66 0.00 5.03
969 1226 4.927782 TGGGAGCGTGTGTGTGGC 62.928 66.667 0.00 0.00 0.00 5.01
976 1233 2.019951 CGTGTGTGTGGCGGTAGTC 61.020 63.158 0.00 0.00 0.00 2.59
1354 1611 4.882427 GGTAAGGAACCCTAGCTTTGATTC 59.118 45.833 0.00 0.00 43.16 2.52
1372 1629 1.835494 TCGACCGATTCTTCCAGTCT 58.165 50.000 0.00 0.00 0.00 3.24
1406 1663 5.478679 TGGTTGGTACCCTGTTGATTAATTG 59.521 40.000 10.07 0.00 44.35 2.32
1442 1699 4.223923 ACTTGTTCGATCAGATTCTCCCTT 59.776 41.667 0.00 0.00 0.00 3.95
1475 1732 0.392998 ATCAATCTCGGTTGGCGCTT 60.393 50.000 7.64 0.00 0.00 4.68
1620 1883 6.683715 CGAGCTCCCCTTTTTACAATTTTTA 58.316 36.000 8.47 0.00 0.00 1.52
1799 2062 8.783093 TCGACAACTTTTGATGACTTTTATCAT 58.217 29.630 0.00 0.00 42.15 2.45
1843 2106 9.765795 GTTAGTACTTTTAGAGCATCATATGGT 57.234 33.333 0.00 0.00 44.87 3.55
1852 2115 4.214971 AGAGCATCATATGGTTCGCAAATC 59.785 41.667 2.13 0.00 41.77 2.17
1892 2155 0.930310 CTTGGACACACTCACACACG 59.070 55.000 0.00 0.00 0.00 4.49
1961 2224 2.544267 GTGAAGTTCCTTGTCAAGTCGG 59.456 50.000 11.61 0.00 0.00 4.79
2133 2396 2.223572 GGCGATACCAAGGCTGAATTTG 60.224 50.000 0.00 0.00 38.86 2.32
2242 2505 1.750399 GCACTCGCAATGGGGATGT 60.750 57.895 0.00 0.00 38.36 3.06
2441 2704 4.440112 CGTGAGATTCCACATACTGTGCTA 60.440 45.833 1.71 0.00 46.51 3.49
2446 2709 7.124573 AGATTCCACATACTGTGCTATGTAA 57.875 36.000 1.71 0.00 46.51 2.41
2507 2771 7.812690 TGAATAATCAGCAATGCTAATCTGT 57.187 32.000 7.70 0.00 36.40 3.41
2615 2879 5.226396 AGATTCGTGAGTTCAGACTTTCTG 58.774 41.667 0.00 0.00 45.59 3.02
2715 2980 3.258372 TCTCATTACAGGACGAAACAGCT 59.742 43.478 0.00 0.00 0.00 4.24
2877 3142 9.135189 TCACAGGATCAAATTTTATATCCAAGG 57.865 33.333 19.12 13.10 40.37 3.61
2899 3164 8.834465 CAAGGATTTACTAAGATGAGTTCATGG 58.166 37.037 0.00 0.00 36.57 3.66
2901 3166 8.943085 AGGATTTACTAAGATGAGTTCATGGAT 58.057 33.333 0.00 0.00 36.57 3.41
2933 3198 9.289303 CAGTTTAATTTTATTTGACATCCGAGG 57.711 33.333 0.00 0.00 0.00 4.63
2934 3199 8.466798 AGTTTAATTTTATTTGACATCCGAGGG 58.533 33.333 0.00 0.00 0.00 4.30
2935 3200 5.852282 AATTTTATTTGACATCCGAGGGG 57.148 39.130 0.00 0.00 0.00 4.79
2953 3218 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2954 3219 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2955 3220 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2956 3221 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2957 3222 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2958 3223 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2959 3224 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2964 3229 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2965 3230 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2966 3231 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2967 3232 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2968 3233 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2969 3234 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2970 3235 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2971 3236 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2972 3237 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2973 3238 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2974 3239 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2975 3240 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2976 3241 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2977 3242 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2978 3243 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2988 3253 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
2989 3254 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
2990 3255 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
2991 3256 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
2992 3257 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
2993 3258 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2994 3259 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
2995 3260 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
2996 3261 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
2997 3262 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
2998 3263 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
2999 3264 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
3000 3265 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
3001 3266 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
3002 3267 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
3016 3281 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3017 3282 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3018 3283 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3019 3284 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3020 3285 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3021 3286 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3022 3287 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3023 3288 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3024 3289 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3025 3290 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3026 3291 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3027 3292 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3028 3293 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3029 3294 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3030 3295 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3031 3296 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3032 3297 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3033 3298 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3034 3299 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3035 3300 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3036 3301 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3037 3302 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
3038 3303 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
3039 3304 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
3040 3305 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
3041 3306 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
3042 3307 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
3043 3308 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
3044 3309 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
3045 3310 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
3046 3311 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
3047 3312 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
3048 3313 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
3049 3314 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
3050 3315 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
3051 3316 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
3052 3317 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
3053 3318 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
3058 3323 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3059 3324 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3060 3325 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3061 3326 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3062 3327 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3063 3328 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3064 3329 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3065 3330 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3066 3331 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3067 3332 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
3068 3333 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
3069 3334 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
3070 3335 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
3071 3336 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
3072 3337 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3073 3338 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3074 3339 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3075 3340 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3076 3341 2.935481 CCTTCCCCAGACCCTGCA 60.935 66.667 0.00 0.00 0.00 4.41
3077 3342 2.352805 CTTCCCCAGACCCTGCAC 59.647 66.667 0.00 0.00 0.00 4.57
3078 3343 2.449518 TTCCCCAGACCCTGCACA 60.450 61.111 0.00 0.00 0.00 4.57
3079 3344 2.067932 CTTCCCCAGACCCTGCACAA 62.068 60.000 0.00 0.00 0.00 3.33
3080 3345 2.034687 CCCCAGACCCTGCACAAG 59.965 66.667 0.00 0.00 0.00 3.16
3081 3346 2.674380 CCCAGACCCTGCACAAGC 60.674 66.667 0.00 0.00 42.57 4.01
3082 3347 3.052082 CCAGACCCTGCACAAGCG 61.052 66.667 0.00 0.00 46.23 4.68
3083 3348 3.052082 CAGACCCTGCACAAGCGG 61.052 66.667 0.00 0.00 46.23 5.52
3098 3363 3.506096 CGGGAGCTGCATGCACTG 61.506 66.667 18.46 9.68 45.94 3.66
3099 3364 3.138798 GGGAGCTGCATGCACTGG 61.139 66.667 18.46 8.85 45.94 4.00
3100 3365 3.138798 GGAGCTGCATGCACTGGG 61.139 66.667 18.46 8.43 45.94 4.45
3101 3366 3.138798 GAGCTGCATGCACTGGGG 61.139 66.667 18.46 8.01 45.94 4.96
3104 3369 3.449227 CTGCATGCACTGGGGCTG 61.449 66.667 18.46 0.00 34.04 4.85
3149 3414 0.944386 CGGAATTGGGACCTTATGCG 59.056 55.000 0.00 0.00 0.00 4.73
3159 3425 1.544246 GACCTTATGCGTTTGCCCTTT 59.456 47.619 0.00 0.00 41.78 3.11
3294 3560 8.058667 TCTTTATACTCGTTTGGACTGATGTA 57.941 34.615 0.00 0.00 0.00 2.29
3307 3573 5.039333 GGACTGATGTAAAATGCTTCATGC 58.961 41.667 0.00 0.00 43.25 4.06
3433 3699 5.985530 TCAACACTTGAGACACTGATTACTG 59.014 40.000 0.00 0.00 34.08 2.74
3589 3861 4.525874 TGAGACAGCATTCCGATATCATCT 59.474 41.667 3.12 0.00 0.00 2.90
3672 3944 3.859411 AGCTACTAGTGACTTGTGAGC 57.141 47.619 9.88 13.07 0.00 4.26
3710 3982 1.184431 CTGCCCAATAATGGTGCACA 58.816 50.000 20.43 5.24 46.01 4.57
3916 4188 1.264749 ACCGCTCCTTGTATCAGGCA 61.265 55.000 0.00 0.00 33.35 4.75
4027 4299 9.881649 AATATCAAGATGCGTATGATACAAGAT 57.118 29.630 13.37 0.53 38.48 2.40
4205 4477 2.567615 TCCCTAGTTCTTCCAGTCAAGC 59.432 50.000 0.00 0.00 0.00 4.01
4618 4890 1.233019 CAATGCCGGATTGCTAGGAG 58.767 55.000 5.05 0.00 35.26 3.69
4624 4896 0.394192 CGGATTGCTAGGAGATGGCA 59.606 55.000 0.00 0.00 44.70 4.92
4638 4910 2.199535 GGCATTGGGGCTAGCCAT 59.800 61.111 34.09 17.32 46.26 4.40
4798 5070 4.496341 GGCATGGAAATCGTGATAGTGTTG 60.496 45.833 0.00 0.00 34.35 3.33
4803 5075 4.270325 GGAAATCGTGATAGTGTTGCCTAC 59.730 45.833 0.00 0.00 0.00 3.18
4839 5111 6.298361 TGAATCTTTGAGTGGATTCAGAACA 58.702 36.000 12.44 0.00 46.99 3.18
4903 5175 1.927895 GACCAATAGTCAGACAGGCG 58.072 55.000 2.66 0.00 45.55 5.52
4909 5181 3.895232 ATAGTCAGACAGGCGTGAATT 57.105 42.857 14.38 0.00 0.00 2.17
4950 5222 2.858644 ACCTGGGGTGATGGAGATAAA 58.141 47.619 0.00 0.00 32.98 1.40
4953 5225 3.954258 CCTGGGGTGATGGAGATAAAAAC 59.046 47.826 0.00 0.00 0.00 2.43
4986 5258 2.125350 GACAAGGAGGCTCGGCTG 60.125 66.667 8.69 7.90 0.00 4.85
5331 5603 0.800012 TGGACGCATTAAAAGACCGC 59.200 50.000 0.00 0.00 0.00 5.68
5609 5881 4.227134 AGATAGCGGCGGCACCAG 62.227 66.667 19.21 0.00 43.41 4.00
5616 5888 4.814294 GGCGGCACCAGTAGTCCG 62.814 72.222 3.07 0.00 40.20 4.79
5763 6035 7.020010 CAGATGCAAAATCAGTTAGAAGTGAC 58.980 38.462 1.92 0.00 40.86 3.67
5913 6194 2.759560 GGAATGGGCGCAATGGGT 60.760 61.111 10.83 0.00 0.00 4.51
5921 6202 2.495866 CGCAATGGGTGGAATGGC 59.504 61.111 0.00 0.00 0.00 4.40
6013 6294 0.250901 GAAGCCAAGTCCAGCTCCAA 60.251 55.000 0.00 0.00 38.74 3.53
6019 6300 2.233271 CAAGTCCAGCTCCAACAATGT 58.767 47.619 0.00 0.00 0.00 2.71
6387 6683 5.986501 AGACTACCACTCCTTTCTAACTG 57.013 43.478 0.00 0.00 0.00 3.16
6609 7065 4.956075 TCATATAGCAAGATCCGCTCCATA 59.044 41.667 10.35 5.37 40.96 2.74
6797 7253 2.173519 CCATTTCTGGGCATGAACAGT 58.826 47.619 14.32 0.00 39.04 3.55
6805 7261 0.674895 GGCATGAACAGTCTCGCCTT 60.675 55.000 0.00 0.00 38.23 4.35
6811 7267 0.250513 AACAGTCTCGCCTTCCCATC 59.749 55.000 0.00 0.00 0.00 3.51
6848 7304 4.248842 CACACCACGGCAGGTCCA 62.249 66.667 0.00 0.00 40.77 4.02
7163 7620 6.160576 ACAACTTGTTTGAGGCATTTGTAT 57.839 33.333 0.00 0.00 38.73 2.29
7188 7645 7.210873 TCACATAACAACCCAATAACAAAACC 58.789 34.615 0.00 0.00 0.00 3.27
7334 7807 1.921982 TACAACCACGCACCTACCTA 58.078 50.000 0.00 0.00 0.00 3.08
7367 7840 1.403780 GCCACCTACACGAGACGAATT 60.404 52.381 0.00 0.00 0.00 2.17
7597 8079 5.063060 GCGAGGTAAAATAGTTTGTGTCGAT 59.937 40.000 15.14 0.00 30.71 3.59
7668 8164 1.389106 GTCCGCACACGAGTTATGAAC 59.611 52.381 0.00 0.00 43.93 3.18
7687 8183 4.037923 TGAACCTGAAGGACATTTTTCAGC 59.962 41.667 2.62 0.00 45.60 4.26
7753 8249 4.248058 CCAAGCCAAATCAACCAGAATTC 58.752 43.478 0.00 0.00 0.00 2.17
7765 8261 5.692115 AACCAGAATTCTTGGTTTTGGTT 57.308 34.783 24.72 20.84 44.49 3.67
7785 8281 4.201881 GGTTGTGTCACTGTTGGTAAGAAC 60.202 45.833 4.27 0.00 0.00 3.01
7846 8343 7.395772 TCAAAATATTGGCAACCATCTGAAGTA 59.604 33.333 0.00 0.00 37.15 2.24
7859 8356 7.099120 ACCATCTGAAGTATCAAAATTTTGCC 58.901 34.615 23.36 14.24 38.05 4.52
7897 8394 1.801771 TGAACCGCATTCTTGGTAACG 59.198 47.619 0.00 0.00 37.54 3.18
7911 8408 2.195922 GGTAACGGTGTAATCGCGAAT 58.804 47.619 15.24 7.65 0.00 3.34
7912 8409 2.034339 GGTAACGGTGTAATCGCGAATG 60.034 50.000 15.24 0.00 0.00 2.67
7913 8410 0.372334 AACGGTGTAATCGCGAATGC 59.628 50.000 15.24 9.62 37.91 3.56
7966 8479 6.671190 TCAACATTGAACAGCAAGTTATGAG 58.329 36.000 10.13 4.85 41.51 2.90
7991 8504 5.528043 TCAGCCAACTTTATTTTTCAGCA 57.472 34.783 0.00 0.00 0.00 4.41
8001 8529 8.816640 ACTTTATTTTTCAGCAGTAACCATTG 57.183 30.769 0.00 0.00 0.00 2.82
8060 8588 4.209307 GAGGATCCTTTTCGACTTTCCT 57.791 45.455 17.42 0.00 34.89 3.36
8068 8596 4.578928 CCTTTTCGACTTTCCTCCTTTTCA 59.421 41.667 0.00 0.00 0.00 2.69
8081 8609 7.954666 TCCTCCTTTTCATTAATTCGGAATT 57.045 32.000 18.97 18.97 34.90 2.17
8083 8611 8.466798 TCCTCCTTTTCATTAATTCGGAATTTC 58.533 33.333 20.04 0.00 32.38 2.17
8113 8641 3.856508 CGTCACGCGTCCTTCAAT 58.143 55.556 9.86 0.00 35.54 2.57
8159 8687 4.466726 TCAAATTTCCATCACCATGCATCA 59.533 37.500 0.00 0.00 0.00 3.07
8211 8739 0.320771 AGCGTCACAAACCCTAGCAG 60.321 55.000 0.00 0.00 0.00 4.24
8223 8751 3.450904 ACCCTAGCAGAAGGTCACAATA 58.549 45.455 0.00 0.00 34.56 1.90
8231 8759 5.189736 AGCAGAAGGTCACAATAGGTTCATA 59.810 40.000 0.00 0.00 0.00 2.15
8234 8762 6.313905 CAGAAGGTCACAATAGGTTCATACAC 59.686 42.308 0.00 0.00 0.00 2.90
8235 8763 4.755411 AGGTCACAATAGGTTCATACACG 58.245 43.478 0.00 0.00 0.00 4.49
8382 8944 9.283768 CAGCCCAATATACAAACAGATATACAA 57.716 33.333 0.00 0.00 0.00 2.41
8407 8970 3.365969 CGCCTTCTTTCCCATACACAAAC 60.366 47.826 0.00 0.00 0.00 2.93
8490 9053 3.630148 GCATGATCGTGGCGACCG 61.630 66.667 16.59 0.00 39.18 4.79
8639 9203 5.044558 GCATTAGTACAGAAGAGGTAGCAC 58.955 45.833 0.00 0.00 0.00 4.40
8675 9240 2.028112 GCAGTACCATCTTCAGGTGTCA 60.028 50.000 0.00 0.00 40.26 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 310 0.258774 TAAGCTGGATGGGGCCTTTC 59.741 55.000 0.84 0.00 0.00 2.62
303 472 2.799126 TTCCTTCGCTCTCTCTCTCT 57.201 50.000 0.00 0.00 0.00 3.10
304 473 5.508200 TTAATTCCTTCGCTCTCTCTCTC 57.492 43.478 0.00 0.00 0.00 3.20
305 474 5.923733 TTTAATTCCTTCGCTCTCTCTCT 57.076 39.130 0.00 0.00 0.00 3.10
306 475 5.465056 CCATTTAATTCCTTCGCTCTCTCTC 59.535 44.000 0.00 0.00 0.00 3.20
338 507 5.509832 TCAGATCCAATTAGCCATGCTAT 57.490 39.130 0.00 0.00 41.01 2.97
467 641 9.110502 GACTCCCGAAGATTAACTCATTAATTT 57.889 33.333 0.00 0.00 40.42 1.82
545 721 5.899631 AACCTACTTCCTCCTTTGTTGTA 57.100 39.130 0.00 0.00 0.00 2.41
591 767 1.302511 GGTGTCACCTCACGGCAAT 60.303 57.895 15.22 0.00 39.00 3.56
660 836 7.552687 CCATGTGTGTTACAACAGGATAAGTAT 59.447 37.037 11.58 0.00 43.77 2.12
675 851 5.953548 TCCTAAGTACTAGCCATGTGTGTTA 59.046 40.000 0.00 0.00 0.00 2.41
720 897 6.819146 TGTCGCTTTAACCATGTAATCACATA 59.181 34.615 0.00 0.00 43.73 2.29
721 898 5.645929 TGTCGCTTTAACCATGTAATCACAT 59.354 36.000 0.00 0.00 46.58 3.21
726 903 5.242434 TCACTGTCGCTTTAACCATGTAAT 58.758 37.500 0.00 0.00 0.00 1.89
730 907 5.991328 ATATCACTGTCGCTTTAACCATG 57.009 39.130 0.00 0.00 0.00 3.66
733 910 5.353123 TGGAAATATCACTGTCGCTTTAACC 59.647 40.000 0.00 0.00 0.00 2.85
738 915 4.201950 GCATTGGAAATATCACTGTCGCTT 60.202 41.667 0.00 0.00 0.00 4.68
740 917 3.313526 AGCATTGGAAATATCACTGTCGC 59.686 43.478 0.00 0.00 0.00 5.19
741 918 4.024556 GGAGCATTGGAAATATCACTGTCG 60.025 45.833 0.00 0.00 0.00 4.35
753 930 3.181423 ACTTAAACCCTGGAGCATTGGAA 60.181 43.478 0.00 0.00 0.00 3.53
754 931 2.378547 ACTTAAACCCTGGAGCATTGGA 59.621 45.455 0.00 0.00 0.00 3.53
758 935 2.615493 CGTGACTTAAACCCTGGAGCAT 60.615 50.000 0.00 0.00 0.00 3.79
759 936 1.270625 CGTGACTTAAACCCTGGAGCA 60.271 52.381 0.00 0.00 0.00 4.26
760 937 1.270678 ACGTGACTTAAACCCTGGAGC 60.271 52.381 0.00 0.00 0.00 4.70
762 939 2.224354 GGAACGTGACTTAAACCCTGGA 60.224 50.000 0.00 0.00 0.00 3.86
763 940 2.148768 GGAACGTGACTTAAACCCTGG 58.851 52.381 0.00 0.00 0.00 4.45
785 962 2.546795 CCTTAGGCACCTCATCATCGAC 60.547 54.545 0.00 0.00 0.00 4.20
793 970 1.623811 GAAGTCACCTTAGGCACCTCA 59.376 52.381 0.00 0.00 0.00 3.86
798 975 4.222145 AGATTTACGAAGTCACCTTAGGCA 59.778 41.667 0.00 0.00 43.93 4.75
806 983 8.635877 ACATATCTTGAGATTTACGAAGTCAC 57.364 34.615 0.00 0.00 37.74 3.67
813 990 5.223382 AGCCGACATATCTTGAGATTTACG 58.777 41.667 0.00 2.24 36.05 3.18
831 1008 1.244816 TTTTCGAGAGACTGAGCCGA 58.755 50.000 0.00 0.00 41.84 5.54
849 1026 3.573695 ACACCCTACCGCTATGAGTATT 58.426 45.455 0.00 0.00 0.00 1.89
852 1029 2.305009 GTACACCCTACCGCTATGAGT 58.695 52.381 0.00 0.00 0.00 3.41
860 1037 0.387622 CACACACGTACACCCTACCG 60.388 60.000 0.00 0.00 0.00 4.02
861 1038 0.675633 ACACACACGTACACCCTACC 59.324 55.000 0.00 0.00 0.00 3.18
885 1062 0.528901 TGGAGCACACACGTACACAC 60.529 55.000 0.00 0.00 0.00 3.82
886 1063 0.249280 CTGGAGCACACACGTACACA 60.249 55.000 0.00 0.00 0.00 3.72
887 1064 0.944311 CCTGGAGCACACACGTACAC 60.944 60.000 0.00 0.00 0.00 2.90
889 1066 1.374252 CCCTGGAGCACACACGTAC 60.374 63.158 0.00 0.00 0.00 3.67
890 1067 1.404479 AACCCTGGAGCACACACGTA 61.404 55.000 0.00 0.00 0.00 3.57
891 1068 2.265467 AAACCCTGGAGCACACACGT 62.265 55.000 0.00 0.00 0.00 4.49
892 1069 1.101049 AAAACCCTGGAGCACACACG 61.101 55.000 0.00 0.00 0.00 4.49
933 1189 4.450419 TCCCATTTTTAAAAACTGCATGCG 59.550 37.500 15.35 10.50 0.00 4.73
946 1203 2.292016 CACACACACGCTCCCATTTTTA 59.708 45.455 0.00 0.00 0.00 1.52
959 1216 0.666577 GAGACTACCGCCACACACAC 60.667 60.000 0.00 0.00 0.00 3.82
969 1226 6.204882 GGGGAAAATATCAAATGAGACTACCG 59.795 42.308 0.00 0.00 0.00 4.02
976 1233 5.009010 CGAGGTGGGGAAAATATCAAATGAG 59.991 44.000 0.00 0.00 0.00 2.90
1015 1272 1.622607 ATCCAACTCGCCGGGATTGA 61.623 55.000 2.18 0.00 38.22 2.57
1265 1522 4.078516 GGGTAGCTGCGTCCCGTT 62.079 66.667 16.55 0.00 0.00 4.44
1354 1611 1.202582 ACAGACTGGAAGAATCGGTCG 59.797 52.381 7.51 0.00 37.43 4.79
1372 1629 2.512355 TACCAACCAGGCAGCGACA 61.512 57.895 0.00 0.00 43.14 4.35
1442 1699 3.420893 AGATTGATCTTGGGCGTTGAAA 58.579 40.909 0.00 0.00 31.97 2.69
1620 1883 6.715280 ACTCCTGAAACATTCTATCACACAT 58.285 36.000 0.00 0.00 0.00 3.21
1653 1916 8.722394 TGACTATCTATACGACATCTGTGATTC 58.278 37.037 0.00 0.00 0.00 2.52
1766 2029 5.694910 GTCATCAAAAGTTGTCGAGAACCTA 59.305 40.000 20.68 3.92 0.00 3.08
1843 2106 0.035598 TCCCCTTCACGATTTGCGAA 59.964 50.000 0.00 0.00 44.57 4.70
1852 2115 0.602905 GACCTTGTGTCCCCTTCACG 60.603 60.000 0.00 0.00 38.09 4.35
1892 2155 2.283821 TGCAAATGGGGAGGTGGC 60.284 61.111 0.00 0.00 0.00 5.01
1951 2214 1.372499 GTGCTACGCCGACTTGACA 60.372 57.895 0.00 0.00 0.00 3.58
1952 2215 1.372499 TGTGCTACGCCGACTTGAC 60.372 57.895 0.00 0.00 0.00 3.18
1961 2224 3.775661 ATAATTTTGGGTGTGCTACGC 57.224 42.857 2.59 2.59 42.21 4.42
2044 2307 4.700213 CAGGACTATGTTCCAAAAATCCGT 59.300 41.667 0.00 0.00 38.25 4.69
2053 2316 6.000246 TGAATAATGCAGGACTATGTTCCA 58.000 37.500 0.00 0.00 38.25 3.53
2242 2505 1.974028 TGGTGCCTAAGTATTCCCCA 58.026 50.000 0.00 0.00 0.00 4.96
2304 2567 1.592400 CCAGCATCACAACAGGCAGG 61.592 60.000 0.00 0.00 0.00 4.85
2507 2771 7.658575 GGCCTTTCGGACATGTAAAATATAGTA 59.341 37.037 0.00 0.00 38.64 1.82
2539 2803 3.737774 GCTTGCTGCCTTTCTTTAAAGTG 59.262 43.478 14.74 6.83 40.51 3.16
2615 2879 3.139603 ACGCACACAAAAACTTACACC 57.860 42.857 0.00 0.00 0.00 4.16
2715 2980 2.803956 GCTGTGCGAGTACCAAACTAAA 59.196 45.455 0.00 0.00 39.07 1.85
2921 3186 2.367202 GGCTCCCCTCGGATGTCAA 61.367 63.158 0.00 0.00 37.60 3.18
2922 3187 2.764128 GGCTCCCCTCGGATGTCA 60.764 66.667 0.00 0.00 37.60 3.58
2923 3188 2.066999 AAGGCTCCCCTCGGATGTC 61.067 63.158 0.00 0.00 41.90 3.06
2924 3189 2.041265 AAGGCTCCCCTCGGATGT 59.959 61.111 0.00 0.00 41.90 3.06
2925 3190 2.507944 CAAGGCTCCCCTCGGATG 59.492 66.667 0.00 0.00 41.90 3.51
2926 3191 2.770048 CCAAGGCTCCCCTCGGAT 60.770 66.667 0.00 0.00 37.52 4.18
2935 3200 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2936 3201 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2937 3202 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2938 3203 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2939 3204 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2940 3205 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2941 3206 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2942 3207 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2946 3211 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2947 3212 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2948 3213 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2949 3214 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2950 3215 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2951 3216 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2952 3217 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2953 3218 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2954 3219 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2955 3220 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2956 3221 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2957 3222 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2958 3223 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2959 3224 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2960 3225 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2961 3226 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2972 3237 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
2973 3238 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
2974 3239 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
2975 3240 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
2976 3241 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
2977 3242 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
2978 3243 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
2979 3244 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
2980 3245 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
2981 3246 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
2982 3247 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
2983 3248 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2984 3249 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2985 3250 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2986 3251 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2987 3252 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2988 3253 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2989 3254 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2990 3255 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2991 3256 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2992 3257 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2993 3258 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2994 3259 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3006 3271 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3007 3272 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3008 3273 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3009 3274 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3010 3275 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3011 3276 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3012 3277 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3013 3278 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3014 3279 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3015 3280 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3016 3281 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3017 3282 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3018 3283 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
3019 3284 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
3020 3285 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
3021 3286 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
3022 3287 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
3023 3288 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
3024 3289 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
3025 3290 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
3026 3291 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
3027 3292 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
3028 3293 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
3029 3294 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
3030 3295 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
3031 3296 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
3032 3297 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
3042 3307 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3043 3308 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3044 3309 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3045 3310 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3046 3311 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3047 3312 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3048 3313 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3049 3314 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3050 3315 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
3051 3316 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3052 3317 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3053 3318 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3054 3319 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3055 3320 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3056 3321 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3057 3322 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3058 3323 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
3059 3324 2.935481 TGCAGGGTCTGGGGAAGG 60.935 66.667 0.00 0.00 31.21 3.46
3060 3325 2.067932 TTGTGCAGGGTCTGGGGAAG 62.068 60.000 0.00 0.00 31.21 3.46
3061 3326 2.067932 CTTGTGCAGGGTCTGGGGAA 62.068 60.000 0.00 0.00 31.21 3.97
3062 3327 2.449518 TTGTGCAGGGTCTGGGGA 60.450 61.111 0.00 0.00 31.21 4.81
3063 3328 2.034687 CTTGTGCAGGGTCTGGGG 59.965 66.667 0.00 0.00 31.21 4.96
3064 3329 2.674380 GCTTGTGCAGGGTCTGGG 60.674 66.667 0.00 0.00 39.41 4.45
3065 3330 3.052082 CGCTTGTGCAGGGTCTGG 61.052 66.667 0.00 0.00 39.64 3.86
3066 3331 3.052082 CCGCTTGTGCAGGGTCTG 61.052 66.667 0.00 0.00 39.64 3.51
3067 3332 4.335647 CCCGCTTGTGCAGGGTCT 62.336 66.667 0.00 0.00 43.24 3.85
3068 3333 4.329545 TCCCGCTTGTGCAGGGTC 62.330 66.667 7.78 0.00 46.04 4.46
3069 3334 4.335647 CTCCCGCTTGTGCAGGGT 62.336 66.667 7.78 0.00 46.04 4.34
3071 3336 4.711949 AGCTCCCGCTTGTGCAGG 62.712 66.667 0.00 0.00 46.47 4.85
3072 3337 3.429141 CAGCTCCCGCTTGTGCAG 61.429 66.667 0.00 0.00 46.47 4.41
3075 3340 2.749044 ATGCAGCTCCCGCTTGTG 60.749 61.111 0.00 0.00 46.47 3.33
3076 3341 2.749044 CATGCAGCTCCCGCTTGT 60.749 61.111 0.00 0.00 46.47 3.16
3077 3342 4.189188 GCATGCAGCTCCCGCTTG 62.189 66.667 14.21 6.16 46.47 4.01
3078 3343 4.728110 TGCATGCAGCTCCCGCTT 62.728 61.111 18.46 0.00 46.47 4.68
3081 3346 3.506096 CAGTGCATGCAGCTCCCG 61.506 66.667 23.41 6.21 45.94 5.14
3082 3347 3.138798 CCAGTGCATGCAGCTCCC 61.139 66.667 23.41 9.09 45.94 4.30
3083 3348 3.138798 CCCAGTGCATGCAGCTCC 61.139 66.667 23.41 9.52 45.94 4.70
3084 3349 3.138798 CCCCAGTGCATGCAGCTC 61.139 66.667 23.41 9.94 45.94 4.09
3087 3352 3.449227 CAGCCCCAGTGCATGCAG 61.449 66.667 23.41 10.61 0.00 4.41
3099 3364 3.433306 AAAATTAAAAAGGGGCAGCCC 57.567 42.857 24.23 24.23 44.51 5.19
3100 3365 6.657117 TCAAATAAAATTAAAAAGGGGCAGCC 59.343 34.615 1.26 1.26 0.00 4.85
3101 3366 7.174080 TGTCAAATAAAATTAAAAAGGGGCAGC 59.826 33.333 0.00 0.00 0.00 5.25
3102 3367 8.614469 TGTCAAATAAAATTAAAAAGGGGCAG 57.386 30.769 0.00 0.00 0.00 4.85
3103 3368 9.225436 GATGTCAAATAAAATTAAAAAGGGGCA 57.775 29.630 0.00 0.00 0.00 5.36
3104 3369 8.673711 GGATGTCAAATAAAATTAAAAAGGGGC 58.326 33.333 0.00 0.00 0.00 5.80
3105 3370 8.878769 CGGATGTCAAATAAAATTAAAAAGGGG 58.121 33.333 0.00 0.00 0.00 4.79
3106 3371 8.878769 CCGGATGTCAAATAAAATTAAAAAGGG 58.121 33.333 0.00 0.00 0.00 3.95
3107 3372 9.646427 TCCGGATGTCAAATAAAATTAAAAAGG 57.354 29.630 0.00 0.00 0.00 3.11
3112 3377 9.593134 CCAATTCCGGATGTCAAATAAAATTAA 57.407 29.630 4.15 0.00 0.00 1.40
3113 3378 8.200792 CCCAATTCCGGATGTCAAATAAAATTA 58.799 33.333 4.15 0.00 0.00 1.40
3114 3379 7.047271 CCCAATTCCGGATGTCAAATAAAATT 58.953 34.615 4.15 0.00 0.00 1.82
3115 3380 6.382570 TCCCAATTCCGGATGTCAAATAAAAT 59.617 34.615 4.15 0.00 0.00 1.82
3116 3381 5.717178 TCCCAATTCCGGATGTCAAATAAAA 59.283 36.000 4.15 0.00 0.00 1.52
3117 3382 5.126384 GTCCCAATTCCGGATGTCAAATAAA 59.874 40.000 4.15 0.00 0.00 1.40
3118 3383 4.642885 GTCCCAATTCCGGATGTCAAATAA 59.357 41.667 4.15 0.00 0.00 1.40
3119 3384 4.204012 GTCCCAATTCCGGATGTCAAATA 58.796 43.478 4.15 0.00 0.00 1.40
3120 3385 3.023832 GTCCCAATTCCGGATGTCAAAT 58.976 45.455 4.15 0.00 0.00 2.32
3121 3386 2.442413 GTCCCAATTCCGGATGTCAAA 58.558 47.619 4.15 0.00 0.00 2.69
3149 3414 2.803133 GCCTGTCAAAGAAAGGGCAAAC 60.803 50.000 5.44 0.00 37.52 2.93
3159 3425 4.787551 TCCTAAAAACAGCCTGTCAAAGA 58.212 39.130 0.00 0.00 0.00 2.52
3307 3573 6.089476 AGATCATCGTACGAAGCATATCAAG 58.911 40.000 23.56 2.71 0.00 3.02
3433 3699 5.462405 TGTTGGAAAATTTACACGGTATGC 58.538 37.500 0.00 0.00 0.00 3.14
3770 4042 4.441792 TCACATCAGTGCGCAAGTATAAT 58.558 39.130 14.00 0.00 45.49 1.28
3821 4093 3.825143 ATTAAATGGCATCCCAAGCAC 57.175 42.857 0.00 0.00 46.14 4.40
3831 4103 8.986847 CACACAACAAATAAGAATTAAATGGCA 58.013 29.630 0.00 0.00 32.17 4.92
3867 4139 8.915813 TGGATACATAATAGGGAATCAGATGA 57.084 34.615 0.00 0.00 46.17 2.92
3916 4188 4.327680 GTGTAAGCCACTCTCCAATCTTT 58.672 43.478 0.00 0.00 41.11 2.52
3949 4221 9.176181 GCGTATTAAACAAGAACATTCTGAAAA 57.824 29.630 0.00 0.00 37.65 2.29
3971 4243 2.896168 CCTGAAAAAGGGATACGCGTA 58.104 47.619 22.94 22.94 43.15 4.42
4027 4299 7.386848 GCGGTTAATACTTGAGGCAATATCTAA 59.613 37.037 0.00 0.00 0.00 2.10
4205 4477 7.364585 GGGATTCTATATCATCTGGTCCAGAAG 60.365 44.444 25.37 20.76 44.04 2.85
4329 4601 3.045601 ACATCCGACTCAAGAGGTTTG 57.954 47.619 1.73 0.00 0.00 2.93
4618 4890 1.905354 GGCTAGCCCCAATGCCATC 60.905 63.158 24.19 0.00 44.34 3.51
4624 4896 1.458209 GCCAATGGCTAGCCCCAAT 60.458 57.895 30.81 15.22 46.69 3.16
4798 5070 2.579410 TCAACTTCCTTTGGGTAGGC 57.421 50.000 0.00 0.00 34.78 3.93
4803 5075 5.302823 ACTCAAAGATTCAACTTCCTTTGGG 59.697 40.000 10.85 10.85 46.78 4.12
4839 5111 5.933463 CCAAATACCACATGCAACTTTCATT 59.067 36.000 0.00 0.00 0.00 2.57
4903 5175 4.273318 AGCTTCCTGGATACCAAATTCAC 58.727 43.478 0.00 0.00 30.80 3.18
4909 5181 5.670361 AGGTAAATAGCTTCCTGGATACCAA 59.330 40.000 18.02 0.00 35.19 3.67
4953 5225 0.824109 TGTCTCCATGACCTAAGCGG 59.176 55.000 0.00 0.00 44.75 5.52
5232 5504 5.788533 CCCCATACCCCAAGTATATACTTCA 59.211 44.000 22.60 8.46 44.19 3.02
5331 5603 5.353123 ACCACATGCTATACTTTTAACGTGG 59.647 40.000 0.00 0.00 44.49 4.94
5609 5881 9.590088 CACTCTTTTTGTTATTAAACGGACTAC 57.410 33.333 0.00 0.00 38.53 2.73
5913 6194 1.147608 CCCATTCCCATAGCCATTCCA 59.852 52.381 0.00 0.00 0.00 3.53
5921 6202 2.718609 ACTCCCATTCCCATTCCCATAG 59.281 50.000 0.00 0.00 0.00 2.23
6013 6294 3.136763 CAGACAGAGCACTTGACATTGT 58.863 45.455 0.00 0.00 0.00 2.71
6019 6300 5.294306 CACTTTTAACAGACAGAGCACTTGA 59.706 40.000 0.00 0.00 0.00 3.02
6387 6683 9.722056 CCAATAAAGAGTTCAAGTTGCATATAC 57.278 33.333 0.00 0.00 0.00 1.47
6609 7065 8.408601 GCATCCACTAATACAGATCAACAAAAT 58.591 33.333 0.00 0.00 0.00 1.82
6736 7192 1.416401 TGCCCGGTGAGATATTTCTCC 59.584 52.381 10.25 4.62 46.67 3.71
6754 7210 1.067142 TCCGGTGAATGACTACACTGC 60.067 52.381 0.00 0.00 40.68 4.40
6797 7253 3.849951 GCCGATGGGAAGGCGAGA 61.850 66.667 0.00 0.00 44.22 4.04
6811 7267 0.950836 TTATTTCATGCATCCCGCCG 59.049 50.000 0.00 0.00 41.33 6.46
6848 7304 3.117888 CCATCCAAGTTACCCATGCTAGT 60.118 47.826 0.00 0.00 0.00 2.57
7163 7620 7.210873 GGTTTTGTTATTGGGTTGTTATGTGA 58.789 34.615 0.00 0.00 0.00 3.58
7200 7657 4.711399 AGAACCGTAAGTAAATATGCCCC 58.289 43.478 0.00 0.00 0.00 5.80
7272 7737 1.079256 CTCCCTCCACCACTCCTCA 59.921 63.158 0.00 0.00 0.00 3.86
7367 7840 3.736100 CCAAGCATCAACGGCGCA 61.736 61.111 10.83 0.00 36.08 6.09
7597 8079 9.976511 ATACTTTCTCGAATTATATTTGTCCGA 57.023 29.630 0.00 0.00 0.00 4.55
7668 8164 3.571401 ACTGCTGAAAAATGTCCTTCAGG 59.429 43.478 12.37 1.63 45.71 3.86
7753 8249 3.056891 ACAGTGACACAACCAAAACCAAG 60.057 43.478 8.59 0.00 0.00 3.61
7765 8261 4.209307 TGTTCTTACCAACAGTGACACA 57.791 40.909 8.59 0.00 32.36 3.72
7785 8281 5.541845 TCCATAGCCAATTCTAGTTCGATG 58.458 41.667 0.00 0.00 0.00 3.84
7815 8311 5.543507 TGGTTGCCAATATTTTGACACTT 57.456 34.783 0.00 0.00 34.60 3.16
7816 8312 5.481473 AGATGGTTGCCAATATTTTGACACT 59.519 36.000 0.00 0.00 36.95 3.55
7819 8315 5.964758 TCAGATGGTTGCCAATATTTTGAC 58.035 37.500 0.00 0.00 36.95 3.18
7840 8336 5.695816 GCACAGGCAAAATTTTGATACTTCA 59.304 36.000 30.40 0.00 40.55 3.02
7841 8337 6.156932 GCACAGGCAAAATTTTGATACTTC 57.843 37.500 30.40 13.71 40.55 3.01
7859 8356 4.860907 GGTTCAGCTTCATAATTTGCACAG 59.139 41.667 0.00 0.00 0.00 3.66
7911 8408 1.227438 GCGGCCTTATTACCTCGCA 60.227 57.895 0.00 0.00 42.27 5.10
7912 8409 0.602905 ATGCGGCCTTATTACCTCGC 60.603 55.000 0.00 0.00 42.90 5.03
7913 8410 1.148310 CATGCGGCCTTATTACCTCG 58.852 55.000 0.00 0.00 0.00 4.63
7914 8411 1.523758 CCATGCGGCCTTATTACCTC 58.476 55.000 0.00 0.00 0.00 3.85
7936 8449 5.048921 ACTTGCTGTTCAATGTTGAGATGAG 60.049 40.000 0.00 0.00 38.61 2.90
7991 8504 5.304686 TGTCTTGGTCTTCAATGGTTACT 57.695 39.130 0.00 0.00 34.45 2.24
8001 8529 5.669164 AGAGTATCCTTGTCTTGGTCTTC 57.331 43.478 0.00 0.00 33.66 2.87
8039 8567 4.185394 GAGGAAAGTCGAAAAGGATCCTC 58.815 47.826 16.52 1.51 43.17 3.71
8060 8588 7.094118 ACCGAAATTCCGAATTAATGAAAAGGA 60.094 33.333 6.79 0.00 0.00 3.36
8068 8596 8.705134 GTTCAAAAACCGAAATTCCGAATTAAT 58.295 29.630 6.79 0.00 0.00 1.40
8081 8609 2.474196 CGTGACGTGTTCAAAAACCGAA 60.474 45.455 0.00 0.00 35.39 4.30
8083 8611 1.448722 CGTGACGTGTTCAAAAACCG 58.551 50.000 0.00 0.00 35.39 4.44
8106 8634 1.740025 GAGGGCTCGTTTCATTGAAGG 59.260 52.381 0.00 0.00 0.00 3.46
8112 8640 0.035056 CAAGGGAGGGCTCGTTTCAT 60.035 55.000 0.00 0.00 0.00 2.57
8113 8641 1.374947 CAAGGGAGGGCTCGTTTCA 59.625 57.895 0.00 0.00 0.00 2.69
8159 8687 5.856126 TGTCGCATCTTTTTAATTCGACT 57.144 34.783 12.06 0.00 43.35 4.18
8211 8739 5.291128 CGTGTATGAACCTATTGTGACCTTC 59.709 44.000 0.00 0.00 0.00 3.46
8382 8944 1.349688 TGTATGGGAAAGAAGGCGTGT 59.650 47.619 0.00 0.00 0.00 4.49
8407 8970 4.625311 TGTCGTGAGTGTAAATGCATGTAG 59.375 41.667 0.00 0.00 0.00 2.74
8490 9053 5.295787 TGGTGCGTAAATACTGGAATTGATC 59.704 40.000 0.00 0.00 0.00 2.92
8548 9112 0.888619 AGGAGCTTTGACGACGATGA 59.111 50.000 0.00 0.00 0.00 2.92
8549 9113 1.272781 GAGGAGCTTTGACGACGATG 58.727 55.000 0.00 0.00 0.00 3.84
8559 9123 3.717452 ATTCTGCTTCTGAGGAGCTTT 57.283 42.857 14.82 0.00 40.81 3.51
8610 9174 1.588404 CTTCTGTACTAATGCGTGCCG 59.412 52.381 0.00 0.00 0.00 5.69
8639 9203 4.192317 GGTACTGCCATCTTAAGGTCTTG 58.808 47.826 1.85 0.00 37.17 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.