AutoCloner

Multiple sequence alignment - TraesCS1B01G383900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G383900	chr1B	100.000	2996	0	0	1	2996	616133630	616130635	0.000000e+00	5533
1	TraesCS1B01G383900	chr1B	94.958	2023	73	13	1	2010	615746196	615744190	0.000000e+00	3144
2	TraesCS1B01G383900	chr1B	86.427	862	90	14	1000	1848	615581738	615582585	0.000000e+00	918
3	TraesCS1B01G383900	chr1B	85.250	861	97	21	1000	1848	615625625	615626467	0.000000e+00	859
4	TraesCS1B01G383900	chr1B	85.736	652	69	10	1394	2024	615732524	615733172	0.000000e+00	667
5	TraesCS1B01G383900	chr1B	97.812	320	7	0	1	320	243752520	243752201	1.210000e-153	553
6	TraesCS1B01G383900	chr1B	84.843	541	62	8	2199	2722	390272586	390273123	7.360000e-146	527
7	TraesCS1B01G383900	chr1B	83.633	501	53	22	792	1278	615731950	615732435	7.620000e-121	444
8	TraesCS1B01G383900	chr1A	86.594	1738	141	45	323	2012	545010166	545008473	0.000000e+00	1834
9	TraesCS1B01G383900	chr1A	89.461	816	61	8	1389	2182	545024903	545024091	0.000000e+00	1007
10	TraesCS1B01G383900	chr1A	85.979	863	94	13	1000	1848	544748298	544749147	0.000000e+00	898
11	TraesCS1B01G383900	chr1A	88.627	466	47	3	1389	1848	544928184	544928649	2.020000e-156	562
12	TraesCS1B01G383900	chr1A	95.975	323	11	2	1	323	449164272	449163952	9.520000e-145	523
13	TraesCS1B01G383900	chr1A	86.071	280	26	7	2724	2996	545024101	545023828	3.780000e-74	289
14	TraesCS1B01G383900	chr1D	84.042	1435	148	47	606	2012	449923967	449922586	0.000000e+00	1306
15	TraesCS1B01G383900	chr1D	79.457	1436	174	68	650	2024	449846523	449847898	0.000000e+00	905
16	TraesCS1B01G383900	chr1D	88.889	765	36	14	1391	2133	449983003	449982266	0.000000e+00	896
17	TraesCS1B01G383900	chr1D	84.634	820	98	17	2199	2996	449982242	449981429	0.000000e+00	791
18	TraesCS1B01G383900	chr1D	83.068	880	79	34	1000	1848	449752638	449753478	0.000000e+00	736
19	TraesCS1B01G383900	chr1D	87.983	466	50	4	1389	1848	449660768	449661233	2.030000e-151	545
20	TraesCS1B01G383900	chr1D	90.210	286	22	3	998	1283	449983436	449983157	4.720000e-98	368
21	TraesCS1B01G383900	chr1D	93.122	189	13	0	323	511	449924195	449924007	8.180000e-71	278
22	TraesCS1B01G383900	chr2B	97.231	325	8	1	1	324	211537431	211537755	1.570000e-152	549
23	TraesCS1B01G383900	chr2B	97.205	322	8	1	1	321	157759088	157758767	7.300000e-151	544
24	TraesCS1B01G383900	chr5B	85.110	544	58	13	2199	2723	67024726	67025265	4.400000e-148	534
25	TraesCS1B01G383900	chr5B	84.023	532	74	9	2199	2722	82441235	82440707	4.460000e-138	501
26	TraesCS1B01G383900	chr5B	83.295	437	61	8	2199	2630	507797383	507796954	2.800000e-105	392
27	TraesCS1B01G383900	chr6B	84.954	545	60	11	2199	2724	21063511	21064052	1.580000e-147	532
28	TraesCS1B01G383900	chr6B	83.425	543	68	12	2199	2722	70054682	70054143	4.490000e-133	484
29	TraesCS1B01G383900	chr7B	96.250	320	12	0	1	320	466744241	466744560	2.650000e-145	525
30	TraesCS1B01G383900	chr3B	96.250	320	11	1	1	320	57339169	57339487	9.520000e-145	523
31	TraesCS1B01G383900	chr3B	84.601	539	64	9	2207	2726	758628326	758628864	4.430000e-143	518
32	TraesCS1B01G383900	chr3B	84.007	544	65	11	2199	2723	214543822	214544362	1.240000e-138	503
33	TraesCS1B01G383900	chr5D	84.489	548	63	11	2199	2727	129238971	129239515	3.420000e-144	521
34	TraesCS1B01G383900	chr5D	80.550	545	82	14	2211	2735	446678532	446679072	6.020000e-107	398
35	TraesCS1B01G383900	chr5A	95.342	322	11	4	1	320	426263515	426263834	2.660000e-140	508
36	TraesCS1B01G383900	chr5A	83.948	542	65	11	2199	2722	467004134	467003597	1.600000e-137	499
37	TraesCS1B01G383900	chr5A	83.456	544	67	13	2199	2722	698686598	698687138	4.490000e-133	484
38	TraesCS1B01G383900	chr4A	94.753	324	15	2	1	324	413338065	413338386	1.240000e-138	503
39	TraesCS1B01G383900	chr6D	81.648	534	77	14	2199	2725	263462379	263461860	9.930000e-115	424
40	TraesCS1B01G383900	chr6D	81.321	530	77	12	2211	2722	46942784	46943309	7.730000e-111	411
41	TraesCS1B01G383900	chrUn	80.769	546	77	24	2207	2732	113057296	113057833	4.650000e-108	401

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G383900	chr1B	616130635	616133630	2995	True	5533.0	5533	100.0000	1	2996	1	chr1B.!!$R3	2995
1	TraesCS1B01G383900	chr1B	615744190	615746196	2006	True	3144.0	3144	94.9580	1	2010	1	chr1B.!!$R2	2009
2	TraesCS1B01G383900	chr1B	615581738	615582585	847	False	918.0	918	86.4270	1000	1848	1	chr1B.!!$F2	848
3	TraesCS1B01G383900	chr1B	615625625	615626467	842	False	859.0	859	85.2500	1000	1848	1	chr1B.!!$F3	848
4	TraesCS1B01G383900	chr1B	615731950	615733172	1222	False	555.5	667	84.6845	792	2024	2	chr1B.!!$F4	1232
5	TraesCS1B01G383900	chr1B	390272586	390273123	537	False	527.0	527	84.8430	2199	2722	1	chr1B.!!$F1	523
6	TraesCS1B01G383900	chr1A	545008473	545010166	1693	True	1834.0	1834	86.5940	323	2012	1	chr1A.!!$R2	1689
7	TraesCS1B01G383900	chr1A	544748298	544749147	849	False	898.0	898	85.9790	1000	1848	1	chr1A.!!$F1	848
8	TraesCS1B01G383900	chr1A	545023828	545024903	1075	True	648.0	1007	87.7660	1389	2996	2	chr1A.!!$R3	1607
9	TraesCS1B01G383900	chr1D	449846523	449847898	1375	False	905.0	905	79.4570	650	2024	1	chr1D.!!$F3	1374
10	TraesCS1B01G383900	chr1D	449922586	449924195	1609	True	792.0	1306	88.5820	323	2012	2	chr1D.!!$R1	1689
11	TraesCS1B01G383900	chr1D	449752638	449753478	840	False	736.0	736	83.0680	1000	1848	1	chr1D.!!$F2	848
12	TraesCS1B01G383900	chr1D	449981429	449983436	2007	True	685.0	896	87.9110	998	2996	3	chr1D.!!$R2	1998
13	TraesCS1B01G383900	chr5B	67024726	67025265	539	False	534.0	534	85.1100	2199	2723	1	chr5B.!!$F1	524
14	TraesCS1B01G383900	chr5B	82440707	82441235	528	True	501.0	501	84.0230	2199	2722	1	chr5B.!!$R1	523
15	TraesCS1B01G383900	chr6B	21063511	21064052	541	False	532.0	532	84.9540	2199	2724	1	chr6B.!!$F1	525
16	TraesCS1B01G383900	chr6B	70054143	70054682	539	True	484.0	484	83.4250	2199	2722	1	chr6B.!!$R1	523
17	TraesCS1B01G383900	chr3B	758628326	758628864	538	False	518.0	518	84.6010	2207	2726	1	chr3B.!!$F3	519
18	TraesCS1B01G383900	chr3B	214543822	214544362	540	False	503.0	503	84.0070	2199	2723	1	chr3B.!!$F2	524
19	TraesCS1B01G383900	chr5D	129238971	129239515	544	False	521.0	521	84.4890	2199	2727	1	chr5D.!!$F1	528
20	TraesCS1B01G383900	chr5D	446678532	446679072	540	False	398.0	398	80.5500	2211	2735	1	chr5D.!!$F2	524
21	TraesCS1B01G383900	chr5A	467003597	467004134	537	True	499.0	499	83.9480	2199	2722	1	chr5A.!!$R1	523
22	TraesCS1B01G383900	chr5A	698686598	698687138	540	False	484.0	484	83.4560	2199	2722	1	chr5A.!!$F2	523
23	TraesCS1B01G383900	chr6D	263461860	263462379	519	True	424.0	424	81.6480	2199	2725	1	chr6D.!!$R1	526
24	TraesCS1B01G383900	chr6D	46942784	46943309	525	False	411.0	411	81.3210	2211	2722	1	chr6D.!!$F1	511
25	TraesCS1B01G383900	chrUn	113057296	113057833	537	False	401.0	401	80.7690	2207	2732	1	chrUn.!!$F1	525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
247	248	3.6363	TGAACAGACACCTTTTCCAATGG	59.364	43.478	0.0	0.0	30.11	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2189	2417	0.038166	TTGTCAGGATCAAGGGCCAC	59.962	55.0	6.18	0.0	0.0	5.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
53	54	4.788075	TCTATCCTCATTTTTCCCACAGGA	59.212	41.667	0.00	0.00	41.88	3.86
99	100	4.251268	TGATGTCTGCTCACAAGATCAAG	58.749	43.478	0.00	0.00	0.00	3.02
247	248	3.636300	TGAACAGACACCTTTTCCAATGG	59.364	43.478	0.00	0.00	30.11	3.16
1626	1795	0.320247	CTCCGAAGCAGCAGACAGTT	60.320	55.000	0.00	0.00	0.00	3.16
1631	1800	2.122564	GAAGCAGCAGACAGTTTTTGC	58.877	47.619	0.00	0.00	38.09	3.68
1740	1912	2.439156	GCAAAGGAGGGCGCAGAT	60.439	61.111	10.83	0.00	0.00	2.90
1807	1979	1.077805	TCGGAGAACCTGGGCTACA	59.922	57.895	0.00	0.00	0.00	2.74
1826	1998	1.446966	GGGAGAGCTCGAGCAACAC	60.447	63.158	36.87	26.07	45.16	3.32
1829	2001	0.319900	GAGAGCTCGAGCAACACCAA	60.320	55.000	36.87	0.00	45.16	3.67
1902	2107	1.077930	GGCAGAGATGGAGCAGCAA	60.078	57.895	0.00	0.00	0.00	3.91
1905	2110	2.017623	GCAGAGATGGAGCAGCAACAT	61.018	52.381	0.00	0.00	0.00	2.71
1942	2147	1.795170	GAAGTTTTCGCTGCCCTGCA	61.795	55.000	0.00	0.00	36.92	4.41
1956	2164	0.954449	CCTGCACAGAACAGAGCCTG	60.954	60.000	0.00	1.16	37.32	4.85
1959	2167	0.888285	GCACAGAACAGAGCCTGCTT	60.888	55.000	0.00	0.00	34.37	3.91
1967	2175	1.271656	ACAGAGCCTGCTTGCAAATTC	59.728	47.619	0.00	0.00	34.37	2.17
2096	2312	2.611292	GCTTCATCTAGCACGCTGAAAT	59.389	45.455	0.72	0.00	40.89	2.17
2139	2367	8.814733	TTTCACGTGATTGTATTTTATTAGCG	57.185	30.769	20.80	0.00	0.00	4.26
2176	2404	7.954666	ATGTACATATTTTTAGGGCAGTTGT	57.045	32.000	6.56	0.00	0.00	3.32
2188	2416	2.460330	CAGTTGTGCATCGACTCCC	58.540	57.895	6.30	0.00	38.62	4.30
2189	2417	1.079819	AGTTGTGCATCGACTCCCG	60.080	57.895	0.00	0.00	36.08	5.14
2190	2418	1.374252	GTTGTGCATCGACTCCCGT	60.374	57.895	0.00	0.00	39.75	5.28
2191	2419	1.374125	TTGTGCATCGACTCCCGTG	60.374	57.895	0.00	0.00	39.75	4.94
2192	2420	2.509336	GTGCATCGACTCCCGTGG	60.509	66.667	0.00	0.00	39.75	4.94
2193	2421	4.451150	TGCATCGACTCCCGTGGC	62.451	66.667	0.00	0.00	39.75	5.01
2195	2423	4.530857	CATCGACTCCCGTGGCCC	62.531	72.222	0.00	0.00	39.75	5.80
2196	2424	4.779733	ATCGACTCCCGTGGCCCT	62.780	66.667	0.00	0.00	39.75	5.19
2281	2513	0.036388	TGTCCTGCTTAGAAAGGCGG	60.036	55.000	0.00	0.00	33.25	6.13
2282	2514	0.249398	GTCCTGCTTAGAAAGGCGGA	59.751	55.000	0.00	0.00	37.02	5.54
2283	2515	1.134371	GTCCTGCTTAGAAAGGCGGAT	60.134	52.381	0.00	0.00	37.02	4.18
2284	2516	2.102588	GTCCTGCTTAGAAAGGCGGATA	59.897	50.000	0.00	0.00	37.02	2.59
2350	2583	1.290203	CATTTCGGCAGTGCGTCTAT	58.710	50.000	9.45	0.00	0.00	1.98
2359	2592	2.416547	GCAGTGCGTCTATCATTGTTGT	59.583	45.455	0.00	0.00	0.00	3.32
2396	2629	0.806241	GTCTCCGGCGGATCTATCTC	59.194	60.000	31.23	10.72	0.00	2.75
2399	2632	0.110678	TCCGGCGGATCTATCTCTGT	59.889	55.000	27.46	0.00	0.00	3.41
2417	2650	2.818432	CTGTTGGATTTGCTCAGAGCTT	59.182	45.455	23.15	8.27	42.97	3.74
2437	2670	4.318546	GCTTGTCGTTGTTCGTCTATGTTT	60.319	41.667	0.00	0.00	40.80	2.83
2481	2716	7.223971	CCTTCCGATCTACGTTATTTTTCATCA	59.776	37.037	0.00	0.00	40.78	3.07
2512	2747	1.833630	CTGTTCCTATGAGCTGGTCCA	59.166	52.381	4.17	0.00	0.00	4.02
2537	2772	0.109226	GCCTTAGCACGACGACTTCT	60.109	55.000	0.00	0.00	39.53	2.85
2583	2830	3.797353	GGAGGGGCGATGAAGGCA	61.797	66.667	0.00	0.00	38.57	4.75
2585	2832	1.152881	GAGGGGCGATGAAGGCAAT	60.153	57.895	0.00	0.00	38.57	3.56
2636	2883	1.452651	TCGCTAGGTGGTCTACGGG	60.453	63.158	0.00	0.00	0.00	5.28
2701	2951	8.473358	TGCCATGATTGAAAATGAATAGATCT	57.527	30.769	0.00	0.00	0.00	2.75
2788	3040	4.825085	TCAACATCTTGACCCTTGTTTACC	59.175	41.667	0.00	0.00	31.00	2.85
2792	3044	5.163088	ACATCTTGACCCTTGTTTACCTTCT	60.163	40.000	0.00	0.00	0.00	2.85
2815	3067	0.037303	ATGTGCCTGGGTTCAGTCAG	59.963	55.000	0.00	0.00	39.31	3.51
2830	3082	4.513442	TCAGTCAGGATTTACATTTCCCG	58.487	43.478	0.00	0.00	32.05	5.14
2836	3089	2.223711	GGATTTACATTTCCCGCGCAAT	60.224	45.455	8.75	0.00	0.00	3.56
2895	3150	8.128582	TGATGTGTAGAAAACAAACAGAACATC	58.871	33.333	0.00	0.00	40.63	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
53	54	9.312904	TCATCTTGATAAAGTTTCCTCCAAAAT	57.687	29.630	0.00	0.00	0.00	1.82
99	100	5.918608	TCTAACACTCCTCCTAATCAATGC	58.081	41.667	0.00	0.00	0.00	3.56
111	112	9.975218	ACATGGTTAATTAATTCTAACACTCCT	57.025	29.630	3.39	0.00	30.97	3.69
247	248	6.826741	TGCTATTTATACAAGGGAAAGGACAC	59.173	38.462	0.00	0.00	0.00	3.67
1449	1595	2.620585	GCAGCTGTTCCAGAAGTTCTTT	59.379	45.455	16.64	0.00	32.44	2.52
1558	1727	2.566279	GGGTCTTACGGTCTTCCTCTTT	59.434	50.000	0.00	0.00	0.00	2.52
1621	1790	1.396607	GGGAACGGGGCAAAAACTGT	61.397	55.000	0.00	0.00	0.00	3.55
1623	1792	3.865071	GGGAACGGGGCAAAAACT	58.135	55.556	0.00	0.00	0.00	2.66
1688	1857	1.260561	CATACAATGCCGTAGCGTTCC	59.739	52.381	0.00	0.00	45.22	3.62
1724	1893	1.078214	TCATCTGCGCCCTCCTTTG	60.078	57.895	4.18	0.00	0.00	2.77
1737	1906	3.352338	GAACCCGGCGTCGTCATCT	62.352	63.158	9.28	0.00	33.95	2.90
1807	1979	1.607756	TGTTGCTCGAGCTCTCCCT	60.608	57.895	35.27	0.00	42.66	4.20
1829	2001	1.005394	CCGCCGTAGTTCCAGTTGT	60.005	57.895	0.00	0.00	0.00	3.32
1887	2068	1.558294	TCATGTTGCTGCTCCATCTCT	59.442	47.619	0.00	0.00	0.00	3.10
1902	2107	3.362399	CTCCAGCGGCTCGTCATGT	62.362	63.158	0.00	0.00	0.00	3.21
1923	2128	1.081175	GCAGGGCAGCGAAAACTTC	60.081	57.895	0.00	0.00	0.00	3.01
1942	2147	0.888285	GCAAGCAGGCTCTGTTCTGT	60.888	55.000	0.00	0.00	33.43	3.41
1956	2164	5.535043	AATTGAATTCGGAATTTGCAAGC	57.465	34.783	16.49	4.39	0.00	4.01
1959	2167	5.545588	TCCAAATTGAATTCGGAATTTGCA	58.454	33.333	24.85	15.83	43.57	4.08
1967	2175	6.254281	AGTACTGTTCCAAATTGAATTCGG	57.746	37.500	0.00	0.00	0.00	4.30
1986	2200	9.871299	GAGAAAGAAACAAAAGATCAGAAGTAC	57.129	33.333	0.00	0.00	0.00	2.73
2046	2262	8.480501	AGTAATTTGCCTACTAACTTCCGAATA	58.519	33.333	0.00	0.00	0.00	1.75
2096	2312	4.001652	TGAAAGTTTGTACGTTGTGTCCA	58.998	39.130	0.00	0.00	0.00	4.02
2151	2379	8.250332	CACAACTGCCCTAAAAATATGTACATT	58.750	33.333	14.77	0.00	0.00	2.71
2176	2404	4.451150	GCCACGGGAGTCGATGCA	62.451	66.667	0.00	0.00	44.67	3.96
2179	2407	4.779733	AGGGCCACGGGAGTCGAT	62.780	66.667	6.18	0.00	44.67	3.59
2184	2412	2.190578	GATCAAGGGCCACGGGAG	59.809	66.667	6.18	0.00	0.00	4.30
2185	2413	3.407967	GGATCAAGGGCCACGGGA	61.408	66.667	6.18	0.00	0.00	5.14
2186	2414	3.411517	AGGATCAAGGGCCACGGG	61.412	66.667	6.18	0.00	0.00	5.28
2187	2415	2.124570	CAGGATCAAGGGCCACGG	60.125	66.667	6.18	0.00	0.00	4.94
2188	2416	1.450312	GTCAGGATCAAGGGCCACG	60.450	63.158	6.18	0.00	0.00	4.94
2189	2417	0.038166	TTGTCAGGATCAAGGGCCAC	59.962	55.000	6.18	0.00	0.00	5.01
2190	2418	0.329261	CTTGTCAGGATCAAGGGCCA	59.671	55.000	6.18	0.00	38.70	5.36
2191	2419	3.181526	CTTGTCAGGATCAAGGGCC	57.818	57.895	0.00	0.00	38.70	5.80
2195	2423	0.745845	CCGGCCTTGTCAGGATCAAG	60.746	60.000	0.00	0.00	44.19	3.02
2196	2424	1.299648	CCGGCCTTGTCAGGATCAA	59.700	57.895	0.00	0.00	44.19	2.57
2197	2425	2.989639	CCGGCCTTGTCAGGATCA	59.010	61.111	0.00	0.00	44.19	2.92
2281	2513	0.102481	TTCAGAGAGCCGCCGTTATC	59.898	55.000	0.00	0.00	0.00	1.75
2282	2514	0.103208	CTTCAGAGAGCCGCCGTTAT	59.897	55.000	0.00	0.00	0.00	1.89
2283	2515	0.963856	TCTTCAGAGAGCCGCCGTTA	60.964	55.000	0.00	0.00	0.00	3.18
2284	2516	1.608717	ATCTTCAGAGAGCCGCCGTT	61.609	55.000	0.00	0.00	34.85	4.44
2350	2583	0.383590	CACACGCCCAACAACAATGA	59.616	50.000	0.00	0.00	0.00	2.57
2359	2592	3.484806	ACACCTCCACACGCCCAA	61.485	61.111	0.00	0.00	0.00	4.12
2396	2629	2.434428	AGCTCTGAGCAAATCCAACAG	58.566	47.619	29.49	0.00	45.56	3.16
2399	2632	2.816087	GACAAGCTCTGAGCAAATCCAA	59.184	45.455	29.49	0.00	45.56	3.53
2414	2647	2.729882	ACATAGACGAACAACGACAAGC	59.270	45.455	0.00	0.00	45.77	4.01
2417	2650	4.026393	CACAAACATAGACGAACAACGACA	60.026	41.667	0.00	0.00	45.77	4.35
2437	2670	4.162320	GGAAGGATCCAATCTAGACACACA	59.838	45.833	15.82	0.00	45.79	3.72
2498	2733	2.289945	GCCCTATTGGACCAGCTCATAG	60.290	54.545	0.00	0.00	35.39	2.23
2499	2734	1.699634	GCCCTATTGGACCAGCTCATA	59.300	52.381	0.00	0.00	35.39	2.15
2512	2747	0.104304	CGTCGTGCTAAGGCCCTATT	59.896	55.000	0.00	0.00	37.74	1.73
2537	2772	4.662961	CGGGCACTGCACAGTCGA	62.663	66.667	3.69	0.00	40.20	4.20
2659	2909	3.527533	TGGCAGTACAACGGACAATATC	58.472	45.455	0.00	0.00	25.29	1.63
2667	2917	2.355197	TCAATCATGGCAGTACAACGG	58.645	47.619	0.00	0.00	0.00	4.44
2722	2972	2.477375	TGTTCGATTTGGTGCGTAACTC	59.523	45.455	0.00	0.00	0.00	3.01
2727	2977	0.309612	GGTTGTTCGATTTGGTGCGT	59.690	50.000	0.00	0.00	0.00	5.24
2810	3062	3.279434	GCGGGAAATGTAAATCCTGACT	58.721	45.455	4.85	0.00	43.56	3.41
2815	3067	0.736053	TGCGCGGGAAATGTAAATCC	59.264	50.000	8.83	0.00	34.85	3.01
2875	3128	7.268447	GCATACGATGTTCTGTTTGTTTTCTAC	59.732	37.037	0.00	0.00	0.00	2.59
2881	3136	6.165659	GTAGCATACGATGTTCTGTTTGTT	57.834	37.500	0.00	0.00	0.00	2.83
2958	3216	9.528018	TTTCTCAATAAACATGACCAAACTTTC	57.472	29.630	0.00	0.00	0.00	2.62

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.