Multiple sequence alignment - TraesCS1B01G383800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G383800 chr1B 100.000 3515 0 0 1 3515 615746412 615742898 0.000000e+00 6492.0
1 TraesCS1B01G383800 chr1B 95.310 2239 76 13 1 2223 616133846 616131621 0.000000e+00 3526.0
2 TraesCS1B01G383800 chr1B 87.668 892 86 14 1216 2097 615581738 615582615 0.000000e+00 1016.0
3 TraesCS1B01G383800 chr1B 86.839 889 92 19 1216 2096 615625625 615626496 0.000000e+00 970.0
4 TraesCS1B01G383800 chr1B 98.321 536 9 0 1 536 243752736 243752201 0.000000e+00 941.0
5 TraesCS1B01G383800 chr1B 88.661 635 51 6 1610 2223 615732524 615733158 0.000000e+00 754.0
6 TraesCS1B01G383800 chr1B 83.633 501 53 22 1008 1494 615731950 615732435 8.950000e-121 444.0
7 TraesCS1B01G383800 chr1A 87.945 1825 128 43 539 2313 545010166 545008384 0.000000e+00 2067.0
8 TraesCS1B01G383800 chr1A 87.919 894 82 15 1216 2097 544748298 544749177 0.000000e+00 1029.0
9 TraesCS1B01G383800 chr1A 97.032 539 14 2 1 539 449164488 449163952 0.000000e+00 905.0
10 TraesCS1B01G383800 chr1A 82.571 918 102 29 2548 3440 545008104 545007220 0.000000e+00 756.0
11 TraesCS1B01G383800 chr1A 88.254 630 50 7 1615 2223 545000601 545001227 0.000000e+00 732.0
12 TraesCS1B01G383800 chr1A 86.164 636 64 10 1605 2223 545024903 545024275 0.000000e+00 665.0
13 TraesCS1B01G383800 chr1D 86.650 1558 114 52 822 2344 449923967 449922469 0.000000e+00 1639.0
14 TraesCS1B01G383800 chr1D 80.748 1418 157 63 866 2223 449846523 449847884 0.000000e+00 1000.0
15 TraesCS1B01G383800 chr1D 84.396 910 75 30 1216 2097 449752638 449753508 0.000000e+00 832.0
16 TraesCS1B01G383800 chr1D 83.051 944 85 37 2548 3441 449919758 449918840 0.000000e+00 787.0
17 TraesCS1B01G383800 chr1D 86.872 617 66 6 1607 2223 449983003 449982402 0.000000e+00 676.0
18 TraesCS1B01G383800 chr1D 90.946 497 40 4 1605 2097 449660768 449661263 0.000000e+00 664.0
19 TraesCS1B01G383800 chr1D 90.210 286 22 3 1214 1499 449983436 449983157 5.540000e-98 368.0
20 TraesCS1B01G383800 chr1D 92.593 189 14 0 539 727 449924195 449924007 4.470000e-69 272.0
21 TraesCS1B01G383800 chr1D 90.476 126 11 1 2348 2472 449922400 449922275 7.810000e-37 165.0
22 TraesCS1B01G383800 chr1D 90.323 62 6 0 2129 2190 449661352 449661413 8.090000e-12 82.4
23 TraesCS1B01G383800 chr2B 97.597 541 12 1 1 540 211537215 211537755 0.000000e+00 926.0
24 TraesCS1B01G383800 chr2B 97.584 538 12 1 1 537 157759304 157758767 0.000000e+00 920.0
25 TraesCS1B01G383800 chr3B 96.269 536 19 1 1 536 57338953 57339487 0.000000e+00 878.0
26 TraesCS1B01G383800 chr7B 96.082 536 21 0 1 536 466744025 466744560 0.000000e+00 874.0
27 TraesCS1B01G383800 chr5A 96.097 538 16 5 1 536 426263300 426263834 0.000000e+00 872.0
28 TraesCS1B01G383800 chr4A 95.539 538 22 2 3 540 413337851 413338386 0.000000e+00 859.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G383800 chr1B 615742898 615746412 3514 True 6492.00 6492 100.0000 1 3515 1 chr1B.!!$R2 3514
1 TraesCS1B01G383800 chr1B 616131621 616133846 2225 True 3526.00 3526 95.3100 1 2223 1 chr1B.!!$R3 2222
2 TraesCS1B01G383800 chr1B 615581738 615582615 877 False 1016.00 1016 87.6680 1216 2097 1 chr1B.!!$F1 881
3 TraesCS1B01G383800 chr1B 615625625 615626496 871 False 970.00 970 86.8390 1216 2096 1 chr1B.!!$F2 880
4 TraesCS1B01G383800 chr1B 243752201 243752736 535 True 941.00 941 98.3210 1 536 1 chr1B.!!$R1 535
5 TraesCS1B01G383800 chr1B 615731950 615733158 1208 False 599.00 754 86.1470 1008 2223 2 chr1B.!!$F3 1215
6 TraesCS1B01G383800 chr1A 545007220 545010166 2946 True 1411.50 2067 85.2580 539 3440 2 chr1A.!!$R3 2901
7 TraesCS1B01G383800 chr1A 544748298 544749177 879 False 1029.00 1029 87.9190 1216 2097 1 chr1A.!!$F1 881
8 TraesCS1B01G383800 chr1A 449163952 449164488 536 True 905.00 905 97.0320 1 539 1 chr1A.!!$R1 538
9 TraesCS1B01G383800 chr1A 545000601 545001227 626 False 732.00 732 88.2540 1615 2223 1 chr1A.!!$F2 608
10 TraesCS1B01G383800 chr1A 545024275 545024903 628 True 665.00 665 86.1640 1605 2223 1 chr1A.!!$R2 618
11 TraesCS1B01G383800 chr1D 449846523 449847884 1361 False 1000.00 1000 80.7480 866 2223 1 chr1D.!!$F2 1357
12 TraesCS1B01G383800 chr1D 449752638 449753508 870 False 832.00 832 84.3960 1216 2097 1 chr1D.!!$F1 881
13 TraesCS1B01G383800 chr1D 449918840 449924195 5355 True 715.75 1639 88.1925 539 3441 4 chr1D.!!$R1 2902
14 TraesCS1B01G383800 chr1D 449982402 449983436 1034 True 522.00 676 88.5410 1214 2223 2 chr1D.!!$R2 1009
15 TraesCS1B01G383800 chr1D 449660768 449661413 645 False 373.20 664 90.6345 1605 2190 2 chr1D.!!$F3 585
16 TraesCS1B01G383800 chr2B 211537215 211537755 540 False 926.00 926 97.5970 1 540 1 chr2B.!!$F1 539
17 TraesCS1B01G383800 chr2B 157758767 157759304 537 True 920.00 920 97.5840 1 537 1 chr2B.!!$R1 536
18 TraesCS1B01G383800 chr3B 57338953 57339487 534 False 878.00 878 96.2690 1 536 1 chr3B.!!$F1 535
19 TraesCS1B01G383800 chr7B 466744025 466744560 535 False 874.00 874 96.0820 1 536 1 chr7B.!!$F1 535
20 TraesCS1B01G383800 chr5A 426263300 426263834 534 False 872.00 872 96.0970 1 536 1 chr5A.!!$F1 535
21 TraesCS1B01G383800 chr4A 413337851 413338386 535 False 859.00 859 95.5390 3 540 1 chr4A.!!$F1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 317 4.840271 TGATGTCTGCTCACAAGATCAAT 58.160 39.13 0.0 0.0 0.00 2.57 F
2169 2436 0.676151 CCTGCCAAGAACAGAGCCTC 60.676 60.00 0.0 0.0 37.32 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 2376 0.753262 ACGAGAACTTGTGCTCCAGT 59.247 50.0 3.37 0.00 0.00 4.00 R
3051 5888 0.108662 GTAGGTGGCTTTGGCAATGC 60.109 55.0 25.09 25.09 40.46 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 187 8.506437 CAGACAATAATCATTATATGTTGCGGT 58.494 33.333 0.00 0.00 0.00 5.68
315 317 4.840271 TGATGTCTGCTCACAAGATCAAT 58.160 39.130 0.00 0.00 0.00 2.57
2169 2436 0.676151 CCTGCCAAGAACAGAGCCTC 60.676 60.000 0.00 0.00 37.32 4.70
2258 2531 8.950007 ATAAAAACATTTCCCTACTTTCTCCA 57.050 30.769 0.00 0.00 0.00 3.86
2263 2538 7.510675 ACATTTCCCTACTTTCTCCATCTTA 57.489 36.000 0.00 0.00 0.00 2.10
2266 2541 9.061435 CATTTCCCTACTTTCTCCATCTTATTC 57.939 37.037 0.00 0.00 0.00 1.75
2306 2581 4.333926 GCCACTTCAGGTAATTTCTAGCAG 59.666 45.833 0.00 0.00 0.00 4.24
2308 2583 4.033358 CACTTCAGGTAATTTCTAGCAGCG 59.967 45.833 0.00 0.00 0.00 5.18
2313 2588 4.811024 CAGGTAATTTCTAGCAGCGATTCA 59.189 41.667 0.00 0.00 0.00 2.57
2314 2589 4.811557 AGGTAATTTCTAGCAGCGATTCAC 59.188 41.667 0.00 0.00 0.00 3.18
2315 2590 4.024809 GGTAATTTCTAGCAGCGATTCACC 60.025 45.833 0.00 0.00 0.00 4.02
2316 2591 3.550437 ATTTCTAGCAGCGATTCACCT 57.450 42.857 0.00 0.00 0.00 4.00
2344 2627 4.030216 AGGTGAAACAAAACAAGGATGGT 58.970 39.130 0.00 0.00 39.98 3.55
2346 2629 4.041723 GTGAAACAAAACAAGGATGGTCG 58.958 43.478 0.00 0.00 36.32 4.79
2405 2753 5.291971 ACATGAAGTTGAAATTGCAAGACC 58.708 37.500 4.94 0.00 0.00 3.85
2417 2765 5.852282 ATTGCAAGACCAACCAATATACC 57.148 39.130 4.94 0.00 0.00 2.73
2419 2767 2.956333 GCAAGACCAACCAATATACCCC 59.044 50.000 0.00 0.00 0.00 4.95
2428 2776 3.878086 ACCAATATACCCCCTCCGTAAT 58.122 45.455 0.00 0.00 0.00 1.89
2641 5438 3.572196 GACCGCGTGGGGAAACGTA 62.572 63.158 21.14 0.00 45.32 3.57
2645 5442 0.179129 CGCGTGGGGAAACGTACTAT 60.179 55.000 0.00 0.00 45.32 2.12
2654 5451 4.638865 GGGGAAACGTACTATGCTCAATTT 59.361 41.667 0.00 0.00 0.00 1.82
2656 5453 5.353123 GGGAAACGTACTATGCTCAATTTGA 59.647 40.000 0.00 0.00 0.00 2.69
2735 5543 8.820831 TGGATAAGAAAAATAAAATTGCCAGGA 58.179 29.630 0.00 0.00 0.00 3.86
2738 5546 9.836864 ATAAGAAAAATAAAATTGCCAGGATCC 57.163 29.630 2.48 2.48 0.00 3.36
2748 5556 4.712122 TTGCCAGGATCCGAAAATAAAC 57.288 40.909 5.98 0.00 0.00 2.01
2763 5571 7.041440 CCGAAAATAAACTTGCCAAGGAAAATT 60.041 33.333 9.64 0.68 0.00 1.82
2779 5588 9.806203 CAAGGAAAATTATTTCATACAGCATGA 57.194 29.630 0.00 0.00 45.53 3.07
2972 5806 6.581712 AGAAACACCTACAACAAATTGCAAT 58.418 32.000 5.99 5.99 39.66 3.56
3063 5900 2.287129 CCAACAAAAGCATTGCCAAAGC 60.287 45.455 4.70 0.00 40.48 3.51
3276 6141 8.642908 AGTTTTGATGATATGATGCACAAATG 57.357 30.769 0.00 0.00 0.00 2.32
3316 6183 7.703621 ACAAAGAAAAATGCCATGATCGAATAG 59.296 33.333 0.00 0.00 0.00 1.73
3317 6184 5.766222 AGAAAAATGCCATGATCGAATAGC 58.234 37.500 0.00 0.00 0.00 2.97
3378 6245 6.715347 AGTATTAACAAAATGGCCATCTCC 57.285 37.500 21.08 0.00 0.00 3.71
3415 6283 9.743057 TTGTCATAACAAAACAAAATACAGAGG 57.257 29.630 0.00 0.00 42.34 3.69
3441 6309 5.233957 TGGCACAATCGAAGTGATAAATG 57.766 39.130 21.27 4.63 39.30 2.32
3442 6310 4.699735 TGGCACAATCGAAGTGATAAATGT 59.300 37.500 21.27 0.37 39.30 2.71
3443 6311 5.163764 TGGCACAATCGAAGTGATAAATGTC 60.164 40.000 21.27 5.44 39.30 3.06
3444 6312 5.163764 GGCACAATCGAAGTGATAAATGTCA 60.164 40.000 21.27 0.00 39.30 3.58
3445 6313 5.734498 GCACAATCGAAGTGATAAATGTCAC 59.266 40.000 21.27 2.43 46.90 3.67
3477 6345 7.424227 AAAAATGGTCATGCTGTTTACAATG 57.576 32.000 0.00 0.00 0.00 2.82
3478 6346 5.981088 AATGGTCATGCTGTTTACAATGA 57.019 34.783 0.00 0.00 0.00 2.57
3479 6347 5.981088 ATGGTCATGCTGTTTACAATGAA 57.019 34.783 0.00 0.00 0.00 2.57
3480 6348 5.981088 TGGTCATGCTGTTTACAATGAAT 57.019 34.783 0.00 0.00 0.00 2.57
3481 6349 6.343716 TGGTCATGCTGTTTACAATGAATT 57.656 33.333 0.00 0.00 0.00 2.17
3482 6350 6.757237 TGGTCATGCTGTTTACAATGAATTT 58.243 32.000 0.00 0.00 0.00 1.82
3483 6351 6.645827 TGGTCATGCTGTTTACAATGAATTTG 59.354 34.615 0.00 0.00 41.36 2.32
3484 6352 6.401367 GGTCATGCTGTTTACAATGAATTTGC 60.401 38.462 0.00 0.00 39.03 3.68
3485 6353 5.638657 TCATGCTGTTTACAATGAATTTGCC 59.361 36.000 0.00 0.00 39.03 4.52
3486 6354 4.953667 TGCTGTTTACAATGAATTTGCCA 58.046 34.783 0.00 0.00 39.03 4.92
3487 6355 5.549347 TGCTGTTTACAATGAATTTGCCAT 58.451 33.333 0.00 0.00 39.03 4.40
3488 6356 5.408909 TGCTGTTTACAATGAATTTGCCATG 59.591 36.000 0.00 0.00 39.03 3.66
3489 6357 5.671825 GCTGTTTACAATGAATTTGCCATGC 60.672 40.000 0.00 0.00 39.03 4.06
3490 6358 4.388165 TGTTTACAATGAATTTGCCATGCG 59.612 37.500 0.00 0.00 39.03 4.73
3491 6359 4.446994 TTACAATGAATTTGCCATGCGA 57.553 36.364 0.00 0.00 39.03 5.10
3492 6360 3.316071 ACAATGAATTTGCCATGCGAA 57.684 38.095 0.00 0.00 39.03 4.70
3493 6361 2.995258 ACAATGAATTTGCCATGCGAAC 59.005 40.909 0.00 0.00 39.03 3.95
3494 6362 2.298411 ATGAATTTGCCATGCGAACC 57.702 45.000 0.00 0.00 34.53 3.62
3495 6363 0.246086 TGAATTTGCCATGCGAACCC 59.754 50.000 0.00 0.00 34.53 4.11
3496 6364 0.246086 GAATTTGCCATGCGAACCCA 59.754 50.000 0.00 0.00 34.53 4.51
3497 6365 0.683973 AATTTGCCATGCGAACCCAA 59.316 45.000 0.00 0.00 34.53 4.12
3498 6366 0.683973 ATTTGCCATGCGAACCCAAA 59.316 45.000 0.00 0.00 34.53 3.28
3499 6367 0.249657 TTTGCCATGCGAACCCAAAC 60.250 50.000 0.00 0.00 0.00 2.93
3500 6368 2.126502 GCCATGCGAACCCAAACG 60.127 61.111 0.00 0.00 0.00 3.60
3501 6369 2.566010 CCATGCGAACCCAAACGG 59.434 61.111 0.00 0.00 37.81 4.44
3502 6370 1.969064 CCATGCGAACCCAAACGGA 60.969 57.895 0.00 0.00 34.64 4.69
3503 6371 1.312371 CCATGCGAACCCAAACGGAT 61.312 55.000 0.00 0.00 40.74 4.18
3504 6372 0.525761 CATGCGAACCCAAACGGATT 59.474 50.000 0.00 0.00 38.37 3.01
3505 6373 0.525761 ATGCGAACCCAAACGGATTG 59.474 50.000 0.00 0.00 37.27 2.67
3506 6374 0.535328 TGCGAACCCAAACGGATTGA 60.535 50.000 0.00 0.00 41.85 2.57
3507 6375 0.109919 GCGAACCCAAACGGATTGAC 60.110 55.000 0.00 0.00 41.85 3.18
3508 6376 0.519961 CGAACCCAAACGGATTGACC 59.480 55.000 0.00 0.00 41.85 4.02
3509 6377 1.611519 GAACCCAAACGGATTGACCA 58.388 50.000 0.00 0.00 41.85 4.02
3510 6378 2.167662 GAACCCAAACGGATTGACCAT 58.832 47.619 0.00 0.00 41.85 3.55
3511 6379 1.544724 ACCCAAACGGATTGACCATG 58.455 50.000 0.00 0.00 41.85 3.66
3512 6380 1.074727 ACCCAAACGGATTGACCATGA 59.925 47.619 0.00 0.00 41.85 3.07
3513 6381 2.291540 ACCCAAACGGATTGACCATGAT 60.292 45.455 0.00 0.00 41.85 2.45
3514 6382 3.053991 ACCCAAACGGATTGACCATGATA 60.054 43.478 0.00 0.00 41.85 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
315 317 5.285401 TCTAACACTCCCCCTAATCAATGA 58.715 41.667 0.00 0.00 0.00 2.57
1725 1885 4.120331 GCCATGGGCTTGTGCGTC 62.120 66.667 15.13 0.00 46.69 5.19
1908 2088 4.053526 TACAGTGCGGCCGCGTTA 62.054 61.111 41.73 26.85 45.51 3.18
2126 2375 1.143305 CGAGAACTTGTGCTCCAGTG 58.857 55.000 3.37 0.00 0.00 3.66
2127 2376 0.753262 ACGAGAACTTGTGCTCCAGT 59.247 50.000 3.37 0.00 0.00 4.00
2233 2506 8.950007 TGGAGAAAGTAGGGAAATGTTTTTAT 57.050 30.769 0.00 0.00 0.00 1.40
2234 2507 8.950007 ATGGAGAAAGTAGGGAAATGTTTTTA 57.050 30.769 0.00 0.00 0.00 1.52
2263 2538 6.439058 AGTGGCACTAACTTCTCTCTTAGAAT 59.561 38.462 20.61 0.00 43.32 2.40
2266 2541 5.652994 AGTGGCACTAACTTCTCTCTTAG 57.347 43.478 20.61 0.00 0.00 2.18
2315 2590 9.981114 ATCCTTGTTTTGTTTCACCTATAAAAG 57.019 29.630 0.00 0.00 0.00 2.27
2316 2591 9.757227 CATCCTTGTTTTGTTTCACCTATAAAA 57.243 29.630 0.00 0.00 0.00 1.52
2332 2615 4.010349 GGAGAAATCGACCATCCTTGTTT 58.990 43.478 0.00 0.00 0.00 2.83
2344 2627 6.053650 TCTATAGTTCAGTCGGAGAAATCGA 58.946 40.000 0.00 0.00 39.69 3.59
2346 2629 9.535878 AATTTCTATAGTTCAGTCGGAGAAATC 57.464 33.333 7.26 0.00 39.84 2.17
2383 2731 5.291178 TGGTCTTGCAATTTCAACTTCATG 58.709 37.500 0.00 0.00 0.00 3.07
2405 2753 1.772453 ACGGAGGGGGTATATTGGTTG 59.228 52.381 0.00 0.00 0.00 3.77
2417 2765 7.381323 ACGTCTTATATTAAATTACGGAGGGG 58.619 38.462 0.00 0.00 33.44 4.79
2507 5053 4.697828 GCTGTCTATCTCCATCTATCGACA 59.302 45.833 0.00 0.00 0.00 4.35
2524 5070 3.673597 TCCTCCCCGGAGCTGTCT 61.674 66.667 0.73 0.00 40.69 3.41
2559 5350 4.947147 TGGTTGGACCCGCTGCAC 62.947 66.667 0.00 0.00 37.50 4.57
2611 5408 0.802494 ACGCGGTCCTTATTTTGCTG 59.198 50.000 12.47 0.00 0.00 4.41
2614 5411 0.450184 CCCACGCGGTCCTTATTTTG 59.550 55.000 12.47 0.00 0.00 2.44
2621 5418 4.324991 GTTTCCCCACGCGGTCCT 62.325 66.667 12.47 0.00 0.00 3.85
2735 5543 4.770010 TCCTTGGCAAGTTTATTTTCGGAT 59.230 37.500 24.57 0.00 0.00 4.18
2738 5546 6.836577 TTTTCCTTGGCAAGTTTATTTTCG 57.163 33.333 24.57 7.19 0.00 3.46
2748 5556 9.090692 CTGTATGAAATAATTTTCCTTGGCAAG 57.909 33.333 20.31 20.31 40.49 4.01
2831 5640 8.600449 TGATCGTTTGCCTTTTTAATGAAAAT 57.400 26.923 0.00 0.00 36.68 1.82
2949 5783 6.648502 CATTGCAATTTGTTGTAGGTGTTTC 58.351 36.000 9.83 0.00 0.00 2.78
2990 5824 5.329399 TGTCATATTTTGCCACCTAGGTTT 58.671 37.500 13.15 0.00 40.61 3.27
2991 5825 4.929479 TGTCATATTTTGCCACCTAGGTT 58.071 39.130 13.15 0.00 40.61 3.50
3032 5869 5.859205 ATGCTTTTGTTGGTTTCTTCTCT 57.141 34.783 0.00 0.00 0.00 3.10
3033 5870 5.277011 GCAATGCTTTTGTTGGTTTCTTCTC 60.277 40.000 0.00 0.00 0.00 2.87
3034 5871 4.571984 GCAATGCTTTTGTTGGTTTCTTCT 59.428 37.500 0.00 0.00 0.00 2.85
3035 5872 4.260743 GGCAATGCTTTTGTTGGTTTCTTC 60.261 41.667 4.82 0.00 0.00 2.87
3036 5873 3.627123 GGCAATGCTTTTGTTGGTTTCTT 59.373 39.130 4.82 0.00 0.00 2.52
3037 5874 3.205338 GGCAATGCTTTTGTTGGTTTCT 58.795 40.909 4.82 0.00 0.00 2.52
3051 5888 0.108662 GTAGGTGGCTTTGGCAATGC 60.109 55.000 25.09 25.09 40.46 3.56
3264 6129 5.598769 TGTTCACATTTCATTTGTGCATCA 58.401 33.333 0.00 0.00 43.29 3.07
3265 6130 6.528014 TTGTTCACATTTCATTTGTGCATC 57.472 33.333 0.00 0.00 43.29 3.91
3266 6131 6.922247 TTTGTTCACATTTCATTTGTGCAT 57.078 29.167 0.00 0.00 43.29 3.96
3267 6132 6.148315 TGTTTTGTTCACATTTCATTTGTGCA 59.852 30.769 0.00 0.00 43.29 4.57
3268 6133 6.541086 TGTTTTGTTCACATTTCATTTGTGC 58.459 32.000 0.00 0.00 43.29 4.57
3269 6134 8.945758 TTTGTTTTGTTCACATTTCATTTGTG 57.054 26.923 0.00 0.00 44.62 3.33
3270 6135 8.997323 TCTTTGTTTTGTTCACATTTCATTTGT 58.003 25.926 0.00 0.00 0.00 2.83
3271 6136 9.823098 TTCTTTGTTTTGTTCACATTTCATTTG 57.177 25.926 0.00 0.00 0.00 2.32
3316 6183 9.875675 TTATTTTTACTTGCATCACAATTTTGC 57.124 25.926 0.00 0.00 37.72 3.68
3356 6223 6.463995 TGGAGATGGCCATTTTGTTAATAC 57.536 37.500 21.84 2.32 31.66 1.89
3414 6282 2.487762 TCACTTCGATTGTGCCAATTCC 59.512 45.455 12.46 0.00 35.58 3.01
3415 6283 3.829886 TCACTTCGATTGTGCCAATTC 57.170 42.857 12.46 0.00 35.58 2.17
3453 6321 7.215789 TCATTGTAAACAGCATGACCATTTTT 58.784 30.769 0.00 0.00 39.69 1.94
3454 6322 6.757237 TCATTGTAAACAGCATGACCATTTT 58.243 32.000 0.00 0.00 39.69 1.82
3455 6323 6.343716 TCATTGTAAACAGCATGACCATTT 57.656 33.333 0.00 0.00 39.69 2.32
3456 6324 5.981088 TCATTGTAAACAGCATGACCATT 57.019 34.783 0.00 0.00 39.69 3.16
3457 6325 5.981088 TTCATTGTAAACAGCATGACCAT 57.019 34.783 0.00 0.00 39.69 3.55
3458 6326 5.981088 ATTCATTGTAAACAGCATGACCA 57.019 34.783 0.00 0.00 39.69 4.02
3459 6327 6.401367 GCAAATTCATTGTAAACAGCATGACC 60.401 38.462 0.00 0.00 41.32 4.02
3460 6328 6.401367 GGCAAATTCATTGTAAACAGCATGAC 60.401 38.462 0.00 0.00 41.32 3.06
3461 6329 5.638657 GGCAAATTCATTGTAAACAGCATGA 59.361 36.000 0.00 0.00 41.32 3.07
3462 6330 5.408909 TGGCAAATTCATTGTAAACAGCATG 59.591 36.000 0.00 0.00 41.32 4.06
3463 6331 5.549347 TGGCAAATTCATTGTAAACAGCAT 58.451 33.333 0.00 0.00 41.32 3.79
3464 6332 4.953667 TGGCAAATTCATTGTAAACAGCA 58.046 34.783 0.00 0.00 41.32 4.41
3465 6333 5.671825 GCATGGCAAATTCATTGTAAACAGC 60.672 40.000 0.00 0.00 41.32 4.40
3466 6334 5.444877 CGCATGGCAAATTCATTGTAAACAG 60.445 40.000 0.00 0.00 41.32 3.16
3467 6335 4.388165 CGCATGGCAAATTCATTGTAAACA 59.612 37.500 0.00 0.00 41.32 2.83
3468 6336 4.624882 TCGCATGGCAAATTCATTGTAAAC 59.375 37.500 0.00 0.00 41.32 2.01
3469 6337 4.814147 TCGCATGGCAAATTCATTGTAAA 58.186 34.783 0.00 0.00 41.32 2.01
3470 6338 4.446994 TCGCATGGCAAATTCATTGTAA 57.553 36.364 0.00 0.00 41.32 2.41
3471 6339 4.172505 GTTCGCATGGCAAATTCATTGTA 58.827 39.130 0.00 0.00 41.32 2.41
3472 6340 2.995258 GTTCGCATGGCAAATTCATTGT 59.005 40.909 0.00 0.00 41.32 2.71
3473 6341 2.349275 GGTTCGCATGGCAAATTCATTG 59.651 45.455 0.00 0.00 42.21 2.82
3474 6342 2.620242 GGTTCGCATGGCAAATTCATT 58.380 42.857 0.00 0.00 0.00 2.57
3475 6343 1.134729 GGGTTCGCATGGCAAATTCAT 60.135 47.619 0.00 0.00 0.00 2.57
3476 6344 0.246086 GGGTTCGCATGGCAAATTCA 59.754 50.000 0.00 0.00 0.00 2.57
3477 6345 0.246086 TGGGTTCGCATGGCAAATTC 59.754 50.000 0.00 0.00 0.00 2.17
3478 6346 0.683973 TTGGGTTCGCATGGCAAATT 59.316 45.000 0.00 0.00 0.00 1.82
3479 6347 0.683973 TTTGGGTTCGCATGGCAAAT 59.316 45.000 0.00 0.00 0.00 2.32
3480 6348 0.249657 GTTTGGGTTCGCATGGCAAA 60.250 50.000 0.00 0.00 0.00 3.68
3481 6349 1.365633 GTTTGGGTTCGCATGGCAA 59.634 52.632 0.00 0.00 0.00 4.52
3482 6350 2.913765 CGTTTGGGTTCGCATGGCA 61.914 57.895 0.00 0.00 0.00 4.92
3483 6351 2.126502 CGTTTGGGTTCGCATGGC 60.127 61.111 0.00 0.00 0.00 4.40
3484 6352 1.312371 ATCCGTTTGGGTTCGCATGG 61.312 55.000 0.00 0.00 37.00 3.66
3485 6353 0.525761 AATCCGTTTGGGTTCGCATG 59.474 50.000 0.00 0.00 30.73 4.06
3486 6354 0.525761 CAATCCGTTTGGGTTCGCAT 59.474 50.000 0.00 0.00 36.01 4.73
3487 6355 0.535328 TCAATCCGTTTGGGTTCGCA 60.535 50.000 0.00 0.00 36.01 5.10
3488 6356 0.109919 GTCAATCCGTTTGGGTTCGC 60.110 55.000 0.00 0.00 36.01 4.70
3489 6357 0.519961 GGTCAATCCGTTTGGGTTCG 59.480 55.000 0.00 0.00 36.01 3.95
3490 6358 1.611519 TGGTCAATCCGTTTGGGTTC 58.388 50.000 0.00 0.00 36.01 3.62
3491 6359 1.892474 CATGGTCAATCCGTTTGGGTT 59.108 47.619 0.00 0.00 40.01 4.11
3492 6360 1.074727 TCATGGTCAATCCGTTTGGGT 59.925 47.619 0.00 0.00 39.52 4.51
3493 6361 1.832883 TCATGGTCAATCCGTTTGGG 58.167 50.000 0.00 0.00 39.52 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.