Multiple sequence alignment - TraesCS1B01G382700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G382700 chr1B 100.000 4050 0 0 1 4050 614941609 614945658 0.000000e+00 7480.0
1 TraesCS1B01G382700 chr1B 90.625 128 12 0 1022 1149 614967999 614968126 1.940000e-38 171.0
2 TraesCS1B01G382700 chr1B 93.023 86 6 0 3342 3427 662015316 662015231 4.250000e-25 126.0
3 TraesCS1B01G382700 chr1B 84.127 126 13 5 1028 1149 614499972 614500094 9.200000e-22 115.0
4 TraesCS1B01G382700 chr1A 90.594 2307 93 39 991 3252 544487004 544489231 0.000000e+00 2944.0
5 TraesCS1B01G382700 chr1A 85.253 651 62 14 3427 4050 563176640 563177283 1.230000e-179 640.0
6 TraesCS1B01G382700 chr1A 90.909 341 22 4 615 949 544486659 544486996 2.220000e-122 449.0
7 TraesCS1B01G382700 chr1A 83.163 392 57 6 63 445 544475785 544476176 2.320000e-92 350.0
8 TraesCS1B01G382700 chr1A 88.971 136 15 0 1011 1146 544492892 544493027 6.960000e-38 169.0
9 TraesCS1B01G382700 chr1A 78.140 215 45 2 1876 2089 544390254 544390467 7.060000e-28 135.0
10 TraesCS1B01G382700 chr1A 100.000 30 0 0 557 586 36281471 36281442 5.650000e-04 56.5
11 TraesCS1B01G382700 chr1D 88.701 2133 159 37 63 2146 449280866 449282965 0.000000e+00 2529.0
12 TraesCS1B01G382700 chr1D 89.423 936 42 25 2180 3103 449282962 449283852 0.000000e+00 1127.0
13 TraesCS1B01G382700 chr1D 84.058 207 29 2 3756 3958 462874845 462874639 3.190000e-46 196.0
14 TraesCS1B01G382700 chr1D 76.440 382 61 22 1021 1389 449309780 449310145 3.220000e-41 180.0
15 TraesCS1B01G382700 chr1D 77.103 214 49 0 1876 2089 448787604 448787817 1.530000e-24 124.0
16 TraesCS1B01G382700 chr6A 89.908 327 28 5 3726 4047 597849689 597849363 2.250000e-112 416.0
17 TraesCS1B01G382700 chr2A 78.424 533 62 32 3438 3960 753101416 753100927 8.510000e-77 298.0
18 TraesCS1B01G382700 chr6D 81.851 281 40 9 3683 3960 448626453 448626725 4.070000e-55 226.0
19 TraesCS1B01G382700 chr7D 80.132 302 45 10 3662 3960 247886576 247886865 1.140000e-50 211.0
20 TraesCS1B01G382700 chr7D 80.093 216 31 7 3671 3884 247886329 247886534 2.520000e-32 150.0
21 TraesCS1B01G382700 chr4B 82.743 226 32 4 3695 3914 463588012 463587788 1.150000e-45 195.0
22 TraesCS1B01G382700 chr3B 80.000 265 44 7 104 360 733081711 733081448 1.920000e-43 187.0
23 TraesCS1B01G382700 chr3B 77.299 348 55 20 1021 1356 8686887 8686552 2.490000e-42 183.0
24 TraesCS1B01G382700 chr3B 94.186 86 5 0 3342 3427 29097840 29097925 9.130000e-27 132.0
25 TraesCS1B01G382700 chr3B 93.023 86 6 0 3342 3427 41096584 41096499 4.250000e-25 126.0
26 TraesCS1B01G382700 chr3B 93.023 86 6 0 3342 3427 41116766 41116681 4.250000e-25 126.0
27 TraesCS1B01G382700 chr3B 91.304 92 8 0 3336 3427 42226411 42226502 4.250000e-25 126.0
28 TraesCS1B01G382700 chr3A 90.000 130 13 0 1021 1150 13188541 13188670 6.960000e-38 169.0
29 TraesCS1B01G382700 chr3A 84.000 75 12 0 2592 2666 13190180 13190254 5.620000e-09 73.1
30 TraesCS1B01G382700 chr3D 79.752 242 39 7 130 364 555800395 555800633 2.500000e-37 167.0
31 TraesCS1B01G382700 chr3D 76.204 353 59 19 1021 1356 7124579 7124235 3.240000e-36 163.0
32 TraesCS1B01G382700 chr3D 81.176 85 16 0 2592 2676 7122988 7122904 7.260000e-08 69.4
33 TraesCS1B01G382700 chr5B 81.308 214 28 8 127 329 95127332 95127120 3.240000e-36 163.0
34 TraesCS1B01G382700 chr5B 86.239 109 15 0 3319 3427 687928567 687928459 7.110000e-23 119.0
35 TraesCS1B01G382700 chrUn 91.304 92 8 0 3336 3427 38594551 38594642 4.250000e-25 126.0
36 TraesCS1B01G382700 chrUn 81.633 98 8 5 3639 3736 108920525 108920438 5.620000e-09 73.1
37 TraesCS1B01G382700 chr2B 84.375 128 16 4 3300 3427 769484147 769484270 5.500000e-24 122.0
38 TraesCS1B01G382700 chr4A 87.037 108 11 3 3321 3427 70323372 70323477 7.110000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G382700 chr1B 614941609 614945658 4049 False 7480.000000 7480 100.000 1 4050 1 chr1B.!!$F2 4049
1 TraesCS1B01G382700 chr1A 544486659 544493027 6368 False 1187.333333 2944 90.158 615 3252 3 chr1A.!!$F4 2637
2 TraesCS1B01G382700 chr1A 563176640 563177283 643 False 640.000000 640 85.253 3427 4050 1 chr1A.!!$F3 623
3 TraesCS1B01G382700 chr1D 449280866 449283852 2986 False 1828.000000 2529 89.062 63 3103 2 chr1D.!!$F3 3040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.109689 AAGAGAAGCGTCGACGGAAG 60.110 55.0 36.13 11.87 40.23 3.46 F
259 261 0.175760 TAATGTCAGAGCTGTCCCGC 59.824 55.0 0.00 0.00 0.00 6.13 F
1767 1821 0.107312 CAGGATGCTCCCAAGGTGAG 60.107 60.0 0.00 1.60 37.19 3.51 F
1845 1921 0.032952 TCCCTCGTTCACGTTGGAAG 59.967 55.0 13.07 0.00 40.80 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1153 1178 0.030369 GGTGGAGGTATACTGTCGCG 59.970 60.0 0.00 0.00 0.00 5.87 R
1827 1903 0.032952 TCTTCCAACGTGAACGAGGG 59.967 55.0 10.26 10.11 43.02 4.30 R
2710 2813 0.032678 CCGGCAAGCAGAGATCGTAT 59.967 55.0 0.00 0.00 0.00 3.06 R
3394 3534 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.605952 CGATGAAGAGAAGCGTCGA 57.394 52.632 0.00 0.00 44.03 4.20
19 20 1.184349 CGATGAAGAGAAGCGTCGAC 58.816 55.000 5.18 5.18 44.03 4.20
20 21 1.184349 GATGAAGAGAAGCGTCGACG 58.816 55.000 32.57 32.57 43.27 5.12
21 22 0.179161 ATGAAGAGAAGCGTCGACGG 60.179 55.000 36.13 19.71 40.23 4.79
22 23 1.232621 TGAAGAGAAGCGTCGACGGA 61.233 55.000 36.13 0.00 40.23 4.69
23 24 0.109873 GAAGAGAAGCGTCGACGGAA 60.110 55.000 36.13 0.00 40.23 4.30
24 25 0.109689 AAGAGAAGCGTCGACGGAAG 60.110 55.000 36.13 11.87 40.23 3.46
25 26 1.514443 GAGAAGCGTCGACGGAAGG 60.514 63.158 36.13 11.48 40.23 3.46
26 27 1.919956 GAGAAGCGTCGACGGAAGGA 61.920 60.000 36.13 0.00 40.23 3.36
27 28 1.139095 GAAGCGTCGACGGAAGGAT 59.861 57.895 36.13 6.19 40.23 3.24
28 29 0.866483 GAAGCGTCGACGGAAGGATC 60.866 60.000 36.13 19.18 40.23 3.36
29 30 2.278661 GCGTCGACGGAAGGATCC 60.279 66.667 36.13 15.40 42.80 3.36
30 31 3.060020 GCGTCGACGGAAGGATCCA 62.060 63.158 36.13 0.00 46.97 3.41
31 32 1.509463 CGTCGACGGAAGGATCCAA 59.491 57.895 29.70 0.00 46.97 3.53
32 33 0.801067 CGTCGACGGAAGGATCCAAC 60.801 60.000 29.70 7.09 46.97 3.77
33 34 0.459759 GTCGACGGAAGGATCCAACC 60.460 60.000 15.82 15.18 46.97 3.77
34 35 0.613853 TCGACGGAAGGATCCAACCT 60.614 55.000 15.82 6.70 46.97 3.50
35 36 0.460284 CGACGGAAGGATCCAACCTG 60.460 60.000 15.82 14.01 46.97 4.00
36 37 0.613777 GACGGAAGGATCCAACCTGT 59.386 55.000 15.82 16.70 46.97 4.00
37 38 1.829222 GACGGAAGGATCCAACCTGTA 59.171 52.381 15.82 0.00 46.97 2.74
38 39 1.831736 ACGGAAGGATCCAACCTGTAG 59.168 52.381 15.82 6.44 46.97 2.74
39 40 2.108168 CGGAAGGATCCAACCTGTAGA 58.892 52.381 15.82 0.00 46.97 2.59
40 41 2.159085 CGGAAGGATCCAACCTGTAGAC 60.159 54.545 15.82 0.00 46.97 2.59
41 42 2.838202 GGAAGGATCCAACCTGTAGACA 59.162 50.000 15.82 0.00 45.79 3.41
42 43 3.369576 GGAAGGATCCAACCTGTAGACAC 60.370 52.174 15.82 0.00 45.79 3.67
43 44 2.902608 AGGATCCAACCTGTAGACACA 58.097 47.619 15.82 0.00 39.01 3.72
44 45 2.567615 AGGATCCAACCTGTAGACACAC 59.432 50.000 15.82 0.00 39.01 3.82
45 46 2.301870 GGATCCAACCTGTAGACACACA 59.698 50.000 6.95 0.00 0.00 3.72
46 47 3.055094 GGATCCAACCTGTAGACACACAT 60.055 47.826 6.95 0.00 0.00 3.21
47 48 4.161565 GGATCCAACCTGTAGACACACATA 59.838 45.833 6.95 0.00 0.00 2.29
48 49 4.530710 TCCAACCTGTAGACACACATAC 57.469 45.455 0.00 0.00 0.00 2.39
49 50 3.057104 TCCAACCTGTAGACACACATACG 60.057 47.826 0.00 0.00 0.00 3.06
50 51 3.305813 CCAACCTGTAGACACACATACGT 60.306 47.826 0.00 0.00 0.00 3.57
51 52 4.082625 CCAACCTGTAGACACACATACGTA 60.083 45.833 0.00 0.00 0.00 3.57
52 53 5.463286 CAACCTGTAGACACACATACGTAA 58.537 41.667 0.00 0.00 0.00 3.18
53 54 5.710513 ACCTGTAGACACACATACGTAAA 57.289 39.130 0.00 0.00 0.00 2.01
54 55 5.464168 ACCTGTAGACACACATACGTAAAC 58.536 41.667 0.00 0.00 0.00 2.01
55 56 4.556135 CCTGTAGACACACATACGTAAACG 59.444 45.833 0.00 0.04 46.33 3.60
56 57 5.355467 TGTAGACACACATACGTAAACGA 57.645 39.130 9.86 0.00 43.02 3.85
57 58 5.756849 TGTAGACACACATACGTAAACGAA 58.243 37.500 9.86 0.00 43.02 3.85
58 59 5.624900 TGTAGACACACATACGTAAACGAAC 59.375 40.000 9.86 0.00 43.02 3.95
60 61 3.626977 ACACACATACGTAAACGAACGA 58.373 40.909 9.86 2.05 45.68 3.85
61 62 4.041049 ACACACATACGTAAACGAACGAA 58.959 39.130 9.86 0.00 45.68 3.85
66 67 0.845768 ACGTAAACGAACGAACACCG 59.154 50.000 9.86 0.00 45.68 4.94
78 79 0.935196 GAACACCGAAGACAAACGCT 59.065 50.000 0.00 0.00 0.00 5.07
81 82 0.508641 CACCGAAGACAAACGCTGAG 59.491 55.000 0.00 0.00 0.00 3.35
83 84 1.221466 CCGAAGACAAACGCTGAGCA 61.221 55.000 4.88 0.00 0.00 4.26
98 99 1.554617 TGAGCAAATCCCACGAGATCA 59.445 47.619 0.00 0.00 0.00 2.92
101 102 1.745141 GCAAATCCCACGAGATCAGCT 60.745 52.381 0.00 0.00 0.00 4.24
137 138 1.883084 GGTGGTAGAAGCATCGCCG 60.883 63.158 0.00 0.00 0.00 6.46
141 142 1.591863 GTAGAAGCATCGCCGGGAC 60.592 63.158 2.18 0.00 0.00 4.46
156 157 2.295602 GGACGGGGGCTAAACTGGA 61.296 63.158 0.00 0.00 0.00 3.86
168 169 5.262009 GGCTAAACTGGAAGGACCTTATTT 58.738 41.667 6.75 8.33 39.30 1.40
170 171 5.944007 GCTAAACTGGAAGGACCTTATTTCA 59.056 40.000 6.75 3.11 39.30 2.69
178 179 7.237982 TGGAAGGACCTTATTTCATCTTCAAA 58.762 34.615 6.75 0.00 39.86 2.69
209 210 4.160439 TGCTTCCTCGTCTTCTTATCATGT 59.840 41.667 0.00 0.00 0.00 3.21
212 213 5.250235 TCCTCGTCTTCTTATCATGTCAC 57.750 43.478 0.00 0.00 0.00 3.67
214 215 5.185056 TCCTCGTCTTCTTATCATGTCACAA 59.815 40.000 0.00 0.00 0.00 3.33
217 218 6.220201 TCGTCTTCTTATCATGTCACAAACA 58.780 36.000 0.00 0.00 43.51 2.83
253 255 5.695851 AAAAACACCTAATGTCAGAGCTG 57.304 39.130 0.00 0.00 42.31 4.24
259 261 0.175760 TAATGTCAGAGCTGTCCCGC 59.824 55.000 0.00 0.00 0.00 6.13
261 263 4.803426 GTCAGAGCTGTCCCGCCG 62.803 72.222 0.00 0.00 0.00 6.46
294 296 2.514592 CACCGCGCCTCCATGATT 60.515 61.111 0.00 0.00 0.00 2.57
298 300 1.645455 CGCGCCTCCATGATTCAAG 59.355 57.895 0.00 0.00 0.00 3.02
301 303 1.303309 CGCCTCCATGATTCAAGGAC 58.697 55.000 6.53 0.00 27.96 3.85
314 316 2.376109 TCAAGGACCATAGGAGACGAC 58.624 52.381 0.00 0.00 0.00 4.34
315 317 2.100197 CAAGGACCATAGGAGACGACA 58.900 52.381 0.00 0.00 0.00 4.35
324 326 3.360340 GAGACGACACGGACCGGT 61.360 66.667 20.00 6.92 0.00 5.28
326 328 3.663176 GACGACACGGACCGGTGA 61.663 66.667 14.63 0.00 40.38 4.02
344 353 2.634777 CGGCGCCGACAAAGAAAA 59.365 55.556 44.86 0.00 42.83 2.29
351 360 3.000727 CGCCGACAAAGAAAACCTAGAT 58.999 45.455 0.00 0.00 0.00 1.98
372 381 9.645059 CTAGATGAGAGTTCTTCATGTAAACAA 57.355 33.333 0.00 0.00 31.64 2.83
405 414 6.146837 CGATGGATTAGAGTTAGATGCAAAGG 59.853 42.308 0.00 0.00 0.00 3.11
409 418 6.038714 GGATTAGAGTTAGATGCAAAGGGTTG 59.961 42.308 0.00 0.00 37.83 3.77
447 456 1.268352 TCGTGCAACAAACCCTAATGC 59.732 47.619 0.00 0.00 35.74 3.56
469 478 5.180304 TGCTAAGTGTTATGTGCAAAATCGA 59.820 36.000 0.00 0.00 0.00 3.59
472 481 4.072131 AGTGTTATGTGCAAAATCGACCT 58.928 39.130 0.00 0.00 0.00 3.85
478 487 5.895636 ATGTGCAAAATCGACCTCAATAA 57.104 34.783 0.00 0.00 0.00 1.40
492 501 6.349280 CGACCTCAATAATTGATGGTTTGTGT 60.349 38.462 0.00 0.00 39.57 3.72
507 516 9.341899 GATGGTTTGTGTAATTTTGTCTATCAC 57.658 33.333 0.00 0.00 0.00 3.06
516 525 9.836864 TGTAATTTTGTCTATCACTATCATGCT 57.163 29.630 0.00 0.00 0.00 3.79
527 536 7.934855 ATCACTATCATGCTTGAAAACTCTT 57.065 32.000 6.36 0.00 34.96 2.85
542 551 3.170791 ACTCTTATGTGTGATGCCTCG 57.829 47.619 0.00 0.00 0.00 4.63
543 552 2.159043 ACTCTTATGTGTGATGCCTCGG 60.159 50.000 0.00 0.00 0.00 4.63
544 553 0.940126 CTTATGTGTGATGCCTCGGC 59.060 55.000 0.00 0.00 42.35 5.54
559 569 2.618709 CCTCGGCAAAATTGATACTCCC 59.381 50.000 0.00 0.00 0.00 4.30
560 570 3.545703 CTCGGCAAAATTGATACTCCCT 58.454 45.455 0.00 0.00 0.00 4.20
562 572 3.945285 TCGGCAAAATTGATACTCCCTTC 59.055 43.478 0.00 0.00 0.00 3.46
563 573 3.242739 CGGCAAAATTGATACTCCCTTCG 60.243 47.826 0.00 0.00 0.00 3.79
564 574 3.694566 GGCAAAATTGATACTCCCTTCGT 59.305 43.478 0.00 0.00 0.00 3.85
566 576 4.201920 GCAAAATTGATACTCCCTTCGTCC 60.202 45.833 0.00 0.00 0.00 4.79
568 578 2.133281 TTGATACTCCCTTCGTCCGA 57.867 50.000 0.00 0.00 0.00 4.55
576 586 3.119209 ACTCCCTTCGTCCGAAATTACTC 60.119 47.826 3.52 0.00 33.34 2.59
579 589 2.850647 CCTTCGTCCGAAATTACTCGTC 59.149 50.000 3.52 0.00 37.11 4.20
601 611 3.865164 CGCTCAAACTGTAGATATGCACA 59.135 43.478 0.00 0.00 0.00 4.57
608 618 4.718961 ACTGTAGATATGCACATTTCCCC 58.281 43.478 0.00 0.00 0.00 4.81
610 620 5.163055 ACTGTAGATATGCACATTTCCCCAT 60.163 40.000 0.00 0.00 0.00 4.00
611 621 5.704354 TGTAGATATGCACATTTCCCCATT 58.296 37.500 0.00 0.00 0.00 3.16
631 641 6.919662 CCCATTCAAAATATCTGATCGTTTGG 59.080 38.462 18.41 9.72 31.57 3.28
661 676 2.632544 CCAGTCGTACGCACCTCCA 61.633 63.158 11.24 0.00 0.00 3.86
667 682 1.446272 GTACGCACCTCCAGCAGTC 60.446 63.158 0.00 0.00 0.00 3.51
685 700 2.439701 CTCGTACAGCTCCCCCGA 60.440 66.667 0.00 0.00 0.00 5.14
730 746 3.475774 CGTACAACGCGGCAGGTC 61.476 66.667 12.47 0.00 33.65 3.85
731 747 3.475774 GTACAACGCGGCAGGTCG 61.476 66.667 12.47 0.00 0.00 4.79
732 748 3.672447 TACAACGCGGCAGGTCGA 61.672 61.111 12.47 0.00 0.00 4.20
786 803 0.745486 CGTGGATGCTTGATGCTCCA 60.745 55.000 7.18 7.18 42.44 3.86
822 839 0.884704 GCCAGACACCTGAAAAGCGA 60.885 55.000 0.00 0.00 43.02 4.93
823 840 1.813513 CCAGACACCTGAAAAGCGAT 58.186 50.000 0.00 0.00 43.02 4.58
1011 1028 4.460683 GGGTACATGGCGACGGCA 62.461 66.667 27.04 27.04 43.52 5.69
1164 1189 0.726256 TACGTGCACGCGACAGTATA 59.274 50.000 37.35 17.65 44.43 1.47
1183 1211 0.535102 ACCTCCACCTTGCTCAAACG 60.535 55.000 0.00 0.00 0.00 3.60
1184 1212 0.535102 CCTCCACCTTGCTCAAACGT 60.535 55.000 0.00 0.00 0.00 3.99
1185 1213 0.588252 CTCCACCTTGCTCAAACGTG 59.412 55.000 0.00 3.71 0.00 4.49
1186 1214 0.179234 TCCACCTTGCTCAAACGTGA 59.821 50.000 0.00 0.00 0.00 4.35
1347 1375 0.879400 CTGCAGGGACGAGATCATGC 60.879 60.000 5.57 0.00 40.35 4.06
1375 1403 2.055579 ACGTTCCTTCCTTCCTTCCTT 58.944 47.619 0.00 0.00 0.00 3.36
1650 1683 1.999048 CACCGCAACGACAAGGTATA 58.001 50.000 0.00 0.00 34.83 1.47
1651 1684 2.546778 CACCGCAACGACAAGGTATAT 58.453 47.619 0.00 0.00 34.83 0.86
1678 1732 7.509141 TTGTTTCATCACTGTATGATTGTGT 57.491 32.000 0.00 0.00 46.54 3.72
1767 1821 0.107312 CAGGATGCTCCCAAGGTGAG 60.107 60.000 0.00 1.60 37.19 3.51
1787 1863 1.067213 GCTCCTCTGTCACCTTCACTC 60.067 57.143 0.00 0.00 0.00 3.51
1788 1864 2.242926 CTCCTCTGTCACCTTCACTCA 58.757 52.381 0.00 0.00 0.00 3.41
1792 1868 3.260380 CCTCTGTCACCTTCACTCAGATT 59.740 47.826 0.00 0.00 35.17 2.40
1816 1892 1.340248 GCTCATCATTTCCCTGCCATG 59.660 52.381 0.00 0.00 0.00 3.66
1817 1893 1.961394 CTCATCATTTCCCTGCCATGG 59.039 52.381 7.63 7.63 0.00 3.66
1821 1897 1.901159 TCATTTCCCTGCCATGGTTTG 59.099 47.619 14.67 3.73 0.00 2.93
1827 1903 1.318158 CCTGCCATGGTTTGCCTCTC 61.318 60.000 14.67 0.00 35.27 3.20
1835 1911 0.673956 GGTTTGCCTCTCCCTCGTTC 60.674 60.000 0.00 0.00 0.00 3.95
1836 1912 0.034896 GTTTGCCTCTCCCTCGTTCA 59.965 55.000 0.00 0.00 0.00 3.18
1838 1914 2.154798 TTGCCTCTCCCTCGTTCACG 62.155 60.000 0.00 0.00 41.45 4.35
1842 1918 0.388649 CTCTCCCTCGTTCACGTTGG 60.389 60.000 0.00 3.58 40.80 3.77
1843 1919 0.824595 TCTCCCTCGTTCACGTTGGA 60.825 55.000 13.07 11.85 40.80 3.53
1845 1921 0.032952 TCCCTCGTTCACGTTGGAAG 59.967 55.000 13.07 0.00 40.80 3.46
1846 1922 0.032952 CCCTCGTTCACGTTGGAAGA 59.967 55.000 13.07 0.00 40.80 2.87
1902 1978 4.268687 CACTTCGAGGAGTGCCAC 57.731 61.111 0.00 0.00 40.43 5.01
2040 2116 3.319198 ACCGACGGCATCCACCTT 61.319 61.111 15.39 0.00 0.00 3.50
2100 2176 2.029666 ACAGGTGTGTGCTCGCTC 59.970 61.111 0.56 0.00 34.75 5.03
2101 2177 2.740055 CAGGTGTGTGCTCGCTCC 60.740 66.667 11.48 11.48 37.81 4.70
2102 2178 4.363990 AGGTGTGTGCTCGCTCCG 62.364 66.667 13.09 0.00 41.05 4.63
2143 2219 4.082517 GCATCTGAAGAAGAAAGGGGTTTC 60.083 45.833 0.00 0.00 38.79 2.78
2144 2220 4.100279 TCTGAAGAAGAAAGGGGTTTCC 57.900 45.455 0.00 0.00 29.54 3.13
2145 2221 4.355287 ATCTGAAGAAGAAAGGGGTTTCCT 59.645 41.667 0.00 0.00 41.92 3.36
2154 2230 1.848174 AGGGGTTTCCTTTCCTTCCT 58.152 50.000 0.00 0.00 45.47 3.36
2155 2231 1.711375 AGGGGTTTCCTTTCCTTCCTC 59.289 52.381 0.00 0.00 45.47 3.71
2156 2232 1.427753 GGGGTTTCCTTTCCTTCCTCA 59.572 52.381 0.00 0.00 0.00 3.86
2157 2233 2.555448 GGGGTTTCCTTTCCTTCCTCAG 60.555 54.545 0.00 0.00 0.00 3.35
2158 2234 2.108425 GGGTTTCCTTTCCTTCCTCAGT 59.892 50.000 0.00 0.00 0.00 3.41
2159 2235 3.436615 GGGTTTCCTTTCCTTCCTCAGTT 60.437 47.826 0.00 0.00 0.00 3.16
2160 2236 4.202535 GGGTTTCCTTTCCTTCCTCAGTTA 60.203 45.833 0.00 0.00 0.00 2.24
2161 2237 4.760715 GGTTTCCTTTCCTTCCTCAGTTAC 59.239 45.833 0.00 0.00 0.00 2.50
2162 2238 5.374071 GTTTCCTTTCCTTCCTCAGTTACA 58.626 41.667 0.00 0.00 0.00 2.41
2163 2239 4.891992 TCCTTTCCTTCCTCAGTTACAG 57.108 45.455 0.00 0.00 0.00 2.74
2164 2240 4.489737 TCCTTTCCTTCCTCAGTTACAGA 58.510 43.478 0.00 0.00 0.00 3.41
2165 2241 5.094387 TCCTTTCCTTCCTCAGTTACAGAT 58.906 41.667 0.00 0.00 0.00 2.90
2166 2242 5.548056 TCCTTTCCTTCCTCAGTTACAGATT 59.452 40.000 0.00 0.00 0.00 2.40
2167 2243 5.645497 CCTTTCCTTCCTCAGTTACAGATTG 59.355 44.000 0.00 0.00 0.00 2.67
2168 2244 4.207891 TCCTTCCTCAGTTACAGATTGC 57.792 45.455 0.00 0.00 0.00 3.56
2169 2245 3.055094 TCCTTCCTCAGTTACAGATTGCC 60.055 47.826 0.00 0.00 0.00 4.52
2170 2246 3.054802 CCTTCCTCAGTTACAGATTGCCT 60.055 47.826 0.00 0.00 0.00 4.75
2171 2247 4.162320 CCTTCCTCAGTTACAGATTGCCTA 59.838 45.833 0.00 0.00 0.00 3.93
2172 2248 4.737855 TCCTCAGTTACAGATTGCCTAC 57.262 45.455 0.00 0.00 0.00 3.18
2173 2249 4.353777 TCCTCAGTTACAGATTGCCTACT 58.646 43.478 0.00 0.00 0.00 2.57
2174 2250 4.402793 TCCTCAGTTACAGATTGCCTACTC 59.597 45.833 0.00 0.00 0.00 2.59
2175 2251 4.442192 CCTCAGTTACAGATTGCCTACTCC 60.442 50.000 0.00 0.00 0.00 3.85
2176 2252 3.130516 TCAGTTACAGATTGCCTACTCCG 59.869 47.826 0.00 0.00 0.00 4.63
2177 2253 3.130516 CAGTTACAGATTGCCTACTCCGA 59.869 47.826 0.00 0.00 0.00 4.55
2178 2254 3.130693 AGTTACAGATTGCCTACTCCGAC 59.869 47.826 0.00 0.00 0.00 4.79
2179 2255 1.853963 ACAGATTGCCTACTCCGACT 58.146 50.000 0.00 0.00 0.00 4.18
2212 2308 6.715280 ACTGAATCTCTTATTTTGAGCAGGA 58.285 36.000 0.00 0.00 0.00 3.86
2275 2371 2.632028 CCTCAGATACATCTCCTGTGGG 59.368 54.545 0.00 0.00 38.92 4.61
2297 2393 0.918258 TGGCAATGGCATCAGGTAGA 59.082 50.000 5.05 0.00 43.71 2.59
2298 2394 1.134007 TGGCAATGGCATCAGGTAGAG 60.134 52.381 5.05 0.00 43.71 2.43
2299 2395 1.133976 GGCAATGGCATCAGGTAGAGT 60.134 52.381 0.00 0.00 43.71 3.24
2300 2396 2.104792 GGCAATGGCATCAGGTAGAGTA 59.895 50.000 0.00 0.00 43.71 2.59
2301 2397 3.397482 GCAATGGCATCAGGTAGAGTAG 58.603 50.000 0.00 0.00 40.72 2.57
2308 2404 4.500716 GGCATCAGGTAGAGTAGCTTCTTC 60.501 50.000 0.00 0.00 33.57 2.87
2309 2405 4.098654 GCATCAGGTAGAGTAGCTTCTTCA 59.901 45.833 0.00 0.00 33.57 3.02
2336 2432 4.502259 CCTCATCAGCTACTCCATTGGTAC 60.502 50.000 1.86 0.00 0.00 3.34
2357 2453 2.477845 TGCTTGTCTGCTCATTGCTA 57.522 45.000 0.00 0.00 43.37 3.49
2359 2455 2.745821 TGCTTGTCTGCTCATTGCTAAG 59.254 45.455 0.00 0.00 43.37 2.18
2360 2456 2.746362 GCTTGTCTGCTCATTGCTAAGT 59.254 45.455 0.00 0.00 43.37 2.24
2362 2458 4.720090 CTTGTCTGCTCATTGCTAAGTTG 58.280 43.478 0.00 0.00 43.37 3.16
2363 2459 3.743521 TGTCTGCTCATTGCTAAGTTGT 58.256 40.909 0.00 0.00 43.37 3.32
2364 2460 4.136796 TGTCTGCTCATTGCTAAGTTGTT 58.863 39.130 0.00 0.00 43.37 2.83
2365 2461 4.023792 TGTCTGCTCATTGCTAAGTTGTTG 60.024 41.667 0.00 0.00 43.37 3.33
2366 2462 4.023707 GTCTGCTCATTGCTAAGTTGTTGT 60.024 41.667 0.00 0.00 43.37 3.32
2367 2463 4.580167 TCTGCTCATTGCTAAGTTGTTGTT 59.420 37.500 0.00 0.00 43.37 2.83
2368 2464 5.067674 TCTGCTCATTGCTAAGTTGTTGTTT 59.932 36.000 0.00 0.00 43.37 2.83
2369 2465 6.262049 TCTGCTCATTGCTAAGTTGTTGTTTA 59.738 34.615 0.00 0.00 43.37 2.01
2370 2466 6.205784 TGCTCATTGCTAAGTTGTTGTTTAC 58.794 36.000 0.00 0.00 43.37 2.01
2371 2467 6.039270 TGCTCATTGCTAAGTTGTTGTTTACT 59.961 34.615 0.00 0.00 43.37 2.24
2372 2468 7.227711 TGCTCATTGCTAAGTTGTTGTTTACTA 59.772 33.333 0.00 0.00 43.37 1.82
2373 2469 8.237267 GCTCATTGCTAAGTTGTTGTTTACTAT 58.763 33.333 0.00 0.00 38.95 2.12
2383 2479 9.498176 AAGTTGTTGTTTACTATACTTACCTGG 57.502 33.333 0.00 0.00 0.00 4.45
2384 2480 8.654094 AGTTGTTGTTTACTATACTTACCTGGT 58.346 33.333 4.05 4.05 0.00 4.00
2385 2481 9.927668 GTTGTTGTTTACTATACTTACCTGGTA 57.072 33.333 1.49 1.49 0.00 3.25
2386 2482 9.927668 TTGTTGTTTACTATACTTACCTGGTAC 57.072 33.333 5.94 0.00 0.00 3.34
2387 2483 9.087871 TGTTGTTTACTATACTTACCTGGTACA 57.912 33.333 5.94 0.00 0.00 2.90
2390 2486 9.258629 TGTTTACTATACTTACCTGGTACATGT 57.741 33.333 5.94 2.69 40.92 3.21
2444 2540 2.669569 CCGGTGGCTGACAGGTTG 60.670 66.667 4.26 0.00 35.30 3.77
2447 2543 1.302832 GGTGGCTGACAGGTTGGAG 60.303 63.158 4.26 0.00 0.00 3.86
2528 2627 1.141657 TGGCAGGCAAGATGGATCTAC 59.858 52.381 0.00 0.00 35.76 2.59
2588 2691 4.532126 ACTTGTGTTGTCTCCATCAGGATA 59.468 41.667 0.00 0.00 44.70 2.59
2590 2693 4.096681 TGTGTTGTCTCCATCAGGATAGT 58.903 43.478 0.00 0.00 44.70 2.12
2710 2813 2.491152 GGATCGACCGCGGTACAA 59.509 61.111 34.36 20.06 38.28 2.41
2711 2814 1.066918 GGATCGACCGCGGTACAAT 59.933 57.895 34.36 23.99 38.28 2.71
2712 2815 0.311790 GGATCGACCGCGGTACAATA 59.688 55.000 34.36 15.30 38.28 1.90
2713 2816 1.402511 GATCGACCGCGGTACAATAC 58.597 55.000 34.36 17.06 38.28 1.89
2730 2833 2.016393 TACGATCTCTGCTTGCCGGG 62.016 60.000 2.18 0.00 0.00 5.73
2738 2841 3.741476 GCTTGCCGGGCTGACAAG 61.741 66.667 21.46 16.99 42.90 3.16
2749 2852 3.215642 CTGACAAGCACACCGATCA 57.784 52.632 0.00 0.00 0.00 2.92
2751 2854 1.195448 CTGACAAGCACACCGATCAAC 59.805 52.381 0.00 0.00 0.00 3.18
2762 2865 2.800544 CACCGATCAACGTCTGAAACTT 59.199 45.455 0.00 0.00 37.67 2.66
2806 2921 3.129502 CAGGCGACGAGGACGGTA 61.130 66.667 0.00 0.00 44.46 4.02
3081 3199 2.125633 GTCTCGGCCGGGTTCTTC 60.126 66.667 27.35 7.98 0.00 2.87
3099 3218 0.169009 TCGTCTCACTGTGATGCTCG 59.831 55.000 11.45 12.79 0.00 5.03
3103 3222 3.190849 CACTGTGATGCTCGGGCG 61.191 66.667 1.14 0.00 42.25 6.13
3125 3246 1.908793 AGAGTGGCGGCAGTAGTGT 60.909 57.895 20.47 1.93 0.00 3.55
3128 3249 2.027625 GTGGCGGCAGTAGTGTCAC 61.028 63.158 13.91 0.00 0.00 3.67
3130 3251 2.809601 GCGGCAGTAGTGTCACGG 60.810 66.667 2.55 0.00 0.00 4.94
3132 3253 1.443872 CGGCAGTAGTGTCACGGTC 60.444 63.158 2.55 0.00 0.00 4.79
3147 3280 2.327244 GTCGTAGAGTAGCCGGCG 59.673 66.667 23.20 3.70 36.95 6.46
3153 3286 0.682209 TAGAGTAGCCGGCGGTTCTT 60.682 55.000 28.82 13.34 0.00 2.52
3154 3287 1.079336 GAGTAGCCGGCGGTTCTTT 60.079 57.895 28.82 10.58 0.00 2.52
3155 3288 1.359459 GAGTAGCCGGCGGTTCTTTG 61.359 60.000 28.82 0.00 0.00 2.77
3156 3289 1.375013 GTAGCCGGCGGTTCTTTGA 60.375 57.895 28.82 2.30 0.00 2.69
3157 3290 0.952010 GTAGCCGGCGGTTCTTTGAA 60.952 55.000 28.82 1.43 0.00 2.69
3179 3312 3.758554 AGAATAATCCCGCCATGTATTGC 59.241 43.478 0.00 0.00 0.00 3.56
3180 3313 2.647683 TAATCCCGCCATGTATTGCA 57.352 45.000 0.00 0.00 0.00 4.08
3229 3363 3.916061 GTACCGCCGTACGTATTCA 57.084 52.632 15.21 0.00 41.42 2.57
3233 3367 1.947642 CGCCGTACGTATTCAGGCC 60.948 63.158 15.21 0.00 44.56 5.19
3246 3380 5.354234 CGTATTCAGGCCTGTTGTATTTTCT 59.646 40.000 31.58 8.21 0.00 2.52
3266 3406 9.893305 ATTTTCTTGTACAAAATGTGCTAGTAC 57.107 29.630 10.03 3.70 37.20 2.73
3267 3407 8.671384 TTTCTTGTACAAAATGTGCTAGTACT 57.329 30.769 10.03 0.00 37.20 2.73
3269 3409 8.752766 TCTTGTACAAAATGTGCTAGTACTAC 57.247 34.615 10.03 5.82 37.20 2.73
3270 3410 7.816031 TCTTGTACAAAATGTGCTAGTACTACC 59.184 37.037 10.03 0.00 37.20 3.18
3272 3412 7.318141 TGTACAAAATGTGCTAGTACTACCTC 58.682 38.462 12.42 0.00 36.80 3.85
3274 3414 6.398918 ACAAAATGTGCTAGTACTACCTCTG 58.601 40.000 12.42 5.03 0.00 3.35
3275 3415 4.657436 AATGTGCTAGTACTACCTCTGC 57.343 45.455 12.42 1.26 0.00 4.26
3276 3416 2.376109 TGTGCTAGTACTACCTCTGCC 58.624 52.381 12.42 0.00 0.00 4.85
3277 3417 2.025226 TGTGCTAGTACTACCTCTGCCT 60.025 50.000 12.42 0.00 0.00 4.75
3280 3420 2.496111 CTAGTACTACCTCTGCCTCGG 58.504 57.143 0.00 0.00 0.00 4.63
3281 3421 0.624785 AGTACTACCTCTGCCTCGGT 59.375 55.000 0.00 0.00 37.31 4.69
3282 3422 0.739561 GTACTACCTCTGCCTCGGTG 59.260 60.000 0.00 0.00 34.76 4.94
3283 3423 0.330604 TACTACCTCTGCCTCGGTGT 59.669 55.000 0.00 0.00 34.76 4.16
3284 3424 0.330604 ACTACCTCTGCCTCGGTGTA 59.669 55.000 0.00 0.00 34.76 2.90
3285 3425 0.739561 CTACCTCTGCCTCGGTGTAC 59.260 60.000 0.00 0.00 34.76 2.90
3286 3426 0.038599 TACCTCTGCCTCGGTGTACA 59.961 55.000 0.00 0.00 34.76 2.90
3287 3427 0.830444 ACCTCTGCCTCGGTGTACAA 60.830 55.000 0.00 0.00 30.90 2.41
3288 3428 0.108615 CCTCTGCCTCGGTGTACAAG 60.109 60.000 0.00 0.00 0.00 3.16
3289 3429 0.603569 CTCTGCCTCGGTGTACAAGT 59.396 55.000 0.00 0.00 0.00 3.16
3290 3430 0.601558 TCTGCCTCGGTGTACAAGTC 59.398 55.000 0.00 0.00 0.00 3.01
3291 3431 0.317160 CTGCCTCGGTGTACAAGTCA 59.683 55.000 0.00 0.00 0.00 3.41
3292 3432 0.973632 TGCCTCGGTGTACAAGTCAT 59.026 50.000 0.00 0.00 0.00 3.06
3293 3433 1.346395 TGCCTCGGTGTACAAGTCATT 59.654 47.619 0.00 0.00 0.00 2.57
3294 3434 2.000447 GCCTCGGTGTACAAGTCATTC 59.000 52.381 0.00 0.00 0.00 2.67
3295 3435 2.353803 GCCTCGGTGTACAAGTCATTCT 60.354 50.000 0.00 0.00 0.00 2.40
3296 3436 3.864921 GCCTCGGTGTACAAGTCATTCTT 60.865 47.826 0.00 0.00 36.75 2.52
3310 3450 8.553459 CAAGTCATTCTTGTATAGTTCCAAGT 57.447 34.615 0.00 0.00 45.89 3.16
3311 3451 9.003658 CAAGTCATTCTTGTATAGTTCCAAGTT 57.996 33.333 0.00 0.00 45.89 2.66
3312 3452 8.553459 AGTCATTCTTGTATAGTTCCAAGTTG 57.447 34.615 0.00 0.00 39.25 3.16
3313 3453 8.375506 AGTCATTCTTGTATAGTTCCAAGTTGA 58.624 33.333 3.87 0.00 39.25 3.18
3314 3454 8.443937 GTCATTCTTGTATAGTTCCAAGTTGAC 58.556 37.037 3.87 15.32 40.75 3.18
3315 3455 8.154203 TCATTCTTGTATAGTTCCAAGTTGACA 58.846 33.333 3.87 0.00 39.25 3.58
3316 3456 8.783093 CATTCTTGTATAGTTCCAAGTTGACAA 58.217 33.333 3.87 4.30 39.25 3.18
3317 3457 8.918202 TTCTTGTATAGTTCCAAGTTGACAAT 57.082 30.769 3.87 0.00 39.25 2.71
3318 3458 8.918202 TCTTGTATAGTTCCAAGTTGACAATT 57.082 30.769 3.87 0.00 39.25 2.32
3319 3459 9.349713 TCTTGTATAGTTCCAAGTTGACAATTT 57.650 29.630 3.87 0.00 39.25 1.82
3327 3467 9.574516 AGTTCCAAGTTGACAATTTAACTATCT 57.425 29.630 3.87 0.00 36.19 1.98
3345 3485 8.773404 AACTATCTAAATATGGCGTATCAACC 57.227 34.615 0.00 0.00 0.00 3.77
3346 3486 8.135382 ACTATCTAAATATGGCGTATCAACCT 57.865 34.615 0.00 0.00 0.00 3.50
3347 3487 8.035394 ACTATCTAAATATGGCGTATCAACCTG 58.965 37.037 0.00 0.00 0.00 4.00
3348 3488 6.169557 TCTAAATATGGCGTATCAACCTGT 57.830 37.500 0.00 0.00 0.00 4.00
3349 3489 7.292713 TCTAAATATGGCGTATCAACCTGTA 57.707 36.000 0.00 0.00 0.00 2.74
3350 3490 7.375834 TCTAAATATGGCGTATCAACCTGTAG 58.624 38.462 0.00 0.00 0.00 2.74
3351 3491 5.546621 AATATGGCGTATCAACCTGTAGT 57.453 39.130 0.00 0.00 0.00 2.73
3352 3492 3.906720 ATGGCGTATCAACCTGTAGTT 57.093 42.857 0.00 0.00 40.16 2.24
3353 3493 6.659745 ATATGGCGTATCAACCTGTAGTTA 57.340 37.500 0.00 0.00 36.18 2.24
3354 3494 4.380841 TGGCGTATCAACCTGTAGTTAG 57.619 45.455 0.00 0.00 36.18 2.34
3355 3495 4.018490 TGGCGTATCAACCTGTAGTTAGA 58.982 43.478 0.00 0.00 36.18 2.10
3356 3496 4.647853 TGGCGTATCAACCTGTAGTTAGAT 59.352 41.667 0.00 0.00 36.18 1.98
3357 3497 4.982916 GGCGTATCAACCTGTAGTTAGATG 59.017 45.833 0.00 0.00 36.18 2.90
3358 3498 4.982916 GCGTATCAACCTGTAGTTAGATGG 59.017 45.833 0.00 0.00 36.18 3.51
3359 3499 5.451520 GCGTATCAACCTGTAGTTAGATGGT 60.452 44.000 0.00 0.00 36.18 3.55
3360 3500 6.570692 CGTATCAACCTGTAGTTAGATGGTT 58.429 40.000 0.00 0.00 41.12 3.67
3361 3501 7.682741 GCGTATCAACCTGTAGTTAGATGGTTA 60.683 40.741 0.00 0.00 38.76 2.85
3362 3502 7.861372 CGTATCAACCTGTAGTTAGATGGTTAG 59.139 40.741 0.00 0.00 38.76 2.34
3363 3503 7.973048 ATCAACCTGTAGTTAGATGGTTAGA 57.027 36.000 0.00 0.00 38.76 2.10
3364 3504 7.406031 TCAACCTGTAGTTAGATGGTTAGAG 57.594 40.000 0.00 0.00 38.76 2.43
3365 3505 6.380274 TCAACCTGTAGTTAGATGGTTAGAGG 59.620 42.308 0.00 0.00 38.76 3.69
3366 3506 5.209659 ACCTGTAGTTAGATGGTTAGAGGG 58.790 45.833 0.00 0.00 32.45 4.30
3367 3507 5.043582 ACCTGTAGTTAGATGGTTAGAGGGA 60.044 44.000 0.00 0.00 32.45 4.20
3368 3508 5.302313 CCTGTAGTTAGATGGTTAGAGGGAC 59.698 48.000 0.00 0.00 0.00 4.46
3370 3510 5.892119 TGTAGTTAGATGGTTAGAGGGACTG 59.108 44.000 0.00 0.00 41.55 3.51
3371 3511 4.949121 AGTTAGATGGTTAGAGGGACTGT 58.051 43.478 0.00 0.00 41.55 3.55
3372 3512 6.088541 AGTTAGATGGTTAGAGGGACTGTA 57.911 41.667 0.00 0.00 41.55 2.74
3373 3513 6.684538 AGTTAGATGGTTAGAGGGACTGTAT 58.315 40.000 0.00 0.00 41.55 2.29
3374 3514 7.133483 AGTTAGATGGTTAGAGGGACTGTATT 58.867 38.462 0.00 0.00 41.55 1.89
3375 3515 8.287350 AGTTAGATGGTTAGAGGGACTGTATTA 58.713 37.037 0.00 0.00 41.55 0.98
3376 3516 9.091220 GTTAGATGGTTAGAGGGACTGTATTAT 57.909 37.037 0.00 0.00 41.55 1.28
3377 3517 7.784470 AGATGGTTAGAGGGACTGTATTATC 57.216 40.000 0.00 0.00 41.55 1.75
3378 3518 6.726764 AGATGGTTAGAGGGACTGTATTATCC 59.273 42.308 0.00 0.00 41.55 2.59
3379 3519 6.039415 TGGTTAGAGGGACTGTATTATCCT 57.961 41.667 0.00 0.00 41.55 3.24
3380 3520 6.449956 TGGTTAGAGGGACTGTATTATCCTT 58.550 40.000 0.00 0.00 41.55 3.36
3381 3521 7.598248 TGGTTAGAGGGACTGTATTATCCTTA 58.402 38.462 0.00 0.00 41.55 2.69
3382 3522 7.728981 TGGTTAGAGGGACTGTATTATCCTTAG 59.271 40.741 0.00 0.00 41.55 2.18
3383 3523 7.309928 GGTTAGAGGGACTGTATTATCCTTAGC 60.310 44.444 0.00 0.00 41.55 3.09
3384 3524 5.088026 AGAGGGACTGTATTATCCTTAGCC 58.912 45.833 0.00 0.00 41.55 3.93
3385 3525 4.168883 AGGGACTGTATTATCCTTAGCCC 58.831 47.826 0.00 0.00 37.18 5.19
3386 3526 3.908103 GGGACTGTATTATCCTTAGCCCA 59.092 47.826 0.00 0.00 35.15 5.36
3387 3527 4.262938 GGGACTGTATTATCCTTAGCCCAC 60.263 50.000 0.00 0.00 35.15 4.61
3388 3528 4.262938 GGACTGTATTATCCTTAGCCCACC 60.263 50.000 0.00 0.00 31.75 4.61
3389 3529 4.303794 ACTGTATTATCCTTAGCCCACCA 58.696 43.478 0.00 0.00 0.00 4.17
3390 3530 4.724798 ACTGTATTATCCTTAGCCCACCAA 59.275 41.667 0.00 0.00 0.00 3.67
3391 3531 5.163195 ACTGTATTATCCTTAGCCCACCAAG 60.163 44.000 0.00 0.00 0.00 3.61
3392 3532 3.884037 ATTATCCTTAGCCCACCAAGG 57.116 47.619 0.00 0.00 42.34 3.61
3393 3533 2.280308 TATCCTTAGCCCACCAAGGT 57.720 50.000 0.62 0.00 41.78 3.50
3394 3534 1.382914 ATCCTTAGCCCACCAAGGTT 58.617 50.000 0.62 0.00 41.78 3.50
3395 3535 0.696501 TCCTTAGCCCACCAAGGTTC 59.303 55.000 0.62 0.00 41.78 3.62
3396 3536 0.404040 CCTTAGCCCACCAAGGTTCA 59.596 55.000 0.00 0.00 37.19 3.18
3397 3537 1.203001 CCTTAGCCCACCAAGGTTCAA 60.203 52.381 0.00 0.00 37.19 2.69
3398 3538 2.593026 CTTAGCCCACCAAGGTTCAAA 58.407 47.619 0.00 0.00 34.66 2.69
3399 3539 2.990740 TAGCCCACCAAGGTTCAAAT 57.009 45.000 0.00 0.00 34.66 2.32
3400 3540 1.632589 AGCCCACCAAGGTTCAAATC 58.367 50.000 0.00 0.00 34.66 2.17
3401 3541 0.608130 GCCCACCAAGGTTCAAATCC 59.392 55.000 0.00 0.00 34.66 3.01
3402 3542 1.827245 GCCCACCAAGGTTCAAATCCT 60.827 52.381 0.00 0.00 36.81 3.24
3403 3543 1.895131 CCCACCAAGGTTCAAATCCTG 59.105 52.381 0.00 0.00 35.27 3.86
3404 3544 1.895131 CCACCAAGGTTCAAATCCTGG 59.105 52.381 0.00 0.00 35.27 4.45
3405 3545 2.597455 CACCAAGGTTCAAATCCTGGT 58.403 47.619 0.00 0.00 37.14 4.00
3406 3546 2.297033 CACCAAGGTTCAAATCCTGGTG 59.703 50.000 8.91 8.91 42.07 4.17
3407 3547 1.273327 CCAAGGTTCAAATCCTGGTGC 59.727 52.381 0.00 0.00 35.27 5.01
3408 3548 2.242043 CAAGGTTCAAATCCTGGTGCT 58.758 47.619 0.00 0.00 35.27 4.40
3409 3549 2.206576 AGGTTCAAATCCTGGTGCTC 57.793 50.000 0.00 0.00 33.62 4.26
3410 3550 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
3411 3551 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
3412 3552 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
3413 3553 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
3414 3554 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
3415 3555 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
3416 3556 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
3417 3557 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
3418 3558 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
3419 3559 2.722094 TCCTGGTGCTCGCATTTATTT 58.278 42.857 0.00 0.00 0.00 1.40
3420 3560 2.682856 TCCTGGTGCTCGCATTTATTTC 59.317 45.455 0.00 0.00 0.00 2.17
3421 3561 2.684881 CCTGGTGCTCGCATTTATTTCT 59.315 45.455 0.00 0.00 0.00 2.52
3422 3562 3.488047 CCTGGTGCTCGCATTTATTTCTG 60.488 47.826 0.00 0.00 0.00 3.02
3423 3563 2.423185 TGGTGCTCGCATTTATTTCTGG 59.577 45.455 0.00 0.00 0.00 3.86
3424 3564 2.682856 GGTGCTCGCATTTATTTCTGGA 59.317 45.455 0.00 0.00 0.00 3.86
3425 3565 3.316308 GGTGCTCGCATTTATTTCTGGAT 59.684 43.478 0.00 0.00 0.00 3.41
3457 3597 2.362120 ACTACTAGCCGCCGGTGT 60.362 61.111 15.14 4.37 0.00 4.16
3483 3623 1.173043 CTAAATTTGGGCCAGTCGCA 58.827 50.000 6.23 0.00 40.31 5.10
3490 3630 4.065281 GGCCAGTCGCACCGTACT 62.065 66.667 0.00 0.00 40.31 2.73
3492 3632 2.202440 CCAGTCGCACCGTACTCG 60.202 66.667 0.00 0.00 0.00 4.18
3500 3640 0.590195 GCACCGTACTCGTCCGATAT 59.410 55.000 0.00 0.00 35.01 1.63
3502 3642 1.600957 CACCGTACTCGTCCGATATGT 59.399 52.381 0.00 0.00 35.01 2.29
3576 3716 0.670239 CTTTTGCCCCCAAATCACGC 60.670 55.000 0.00 0.00 40.40 5.34
3578 3718 1.402896 TTTGCCCCCAAATCACGCAA 61.403 50.000 0.00 0.00 36.09 4.85
3612 3756 0.795085 GAGAACGAGACGACCTTCGA 59.205 55.000 1.94 0.00 43.74 3.71
3617 3761 0.521659 CGAGACGACCTTCGAAGCTC 60.522 60.000 19.99 17.42 43.74 4.09
3627 3771 4.514577 CGAAGCTCGCCGGACCAT 62.515 66.667 5.05 0.00 31.14 3.55
3644 3788 2.481471 ATCGTCGCTCGCTGGATCA 61.481 57.895 0.00 0.00 39.67 2.92
3646 3790 2.583593 GTCGCTCGCTGGATCACC 60.584 66.667 0.00 0.00 0.00 4.02
3649 3793 2.125512 GCTCGCTGGATCACCGTT 60.126 61.111 0.00 0.00 39.42 4.44
3681 3825 2.005960 GCCGCTACTCACCAGATCGT 62.006 60.000 0.00 0.00 0.00 3.73
3684 3828 1.532090 CGCTACTCACCAGATCGTCAC 60.532 57.143 0.00 0.00 0.00 3.67
3690 3834 0.244721 CACCAGATCGTCACTGCTCA 59.755 55.000 0.00 0.00 34.47 4.26
3693 3837 0.459237 CAGATCGTCACTGCTCACCC 60.459 60.000 0.00 0.00 0.00 4.61
3719 3863 2.750237 CCCTTGCTACCGGGTTGC 60.750 66.667 23.87 23.87 35.65 4.17
3731 3875 3.050089 GGGTTGCATCAAACCTCCA 57.950 52.632 6.39 0.00 46.75 3.86
3734 3878 0.603065 GTTGCATCAAACCTCCACCC 59.397 55.000 0.00 0.00 0.00 4.61
3739 3883 0.776080 ATCAAACCTCCACCCCACCT 60.776 55.000 0.00 0.00 0.00 4.00
3740 3884 1.074951 CAAACCTCCACCCCACCTC 59.925 63.158 0.00 0.00 0.00 3.85
3745 3889 3.869934 TCCACCCCACCTCCACCT 61.870 66.667 0.00 0.00 0.00 4.00
3746 3890 3.330720 CCACCCCACCTCCACCTC 61.331 72.222 0.00 0.00 0.00 3.85
3748 3892 3.869934 ACCCCACCTCCACCTCCA 61.870 66.667 0.00 0.00 0.00 3.86
3754 3918 2.603473 CCTCCACCTCCACGACCA 60.603 66.667 0.00 0.00 0.00 4.02
3756 3920 1.908793 CTCCACCTCCACGACCACT 60.909 63.158 0.00 0.00 0.00 4.00
3792 4017 1.511850 CGACCTTGCAACACATCTCA 58.488 50.000 0.00 0.00 0.00 3.27
3828 5390 3.991051 CTCGCAGTGGTGACCCGT 61.991 66.667 0.00 0.00 0.00 5.28
3862 5574 2.680913 GCATCGGTTGTCGCAGCTT 61.681 57.895 0.00 0.00 39.05 3.74
3873 5585 2.053627 GTCGCAGCTTTGGAATTGTTG 58.946 47.619 0.00 0.00 0.00 3.33
3878 5590 3.493176 GCAGCTTTGGAATTGTTGGTTCT 60.493 43.478 0.00 0.00 0.00 3.01
3893 5605 7.759489 TGTTGGTTCTAGCAAAAATAGATGT 57.241 32.000 0.00 0.00 37.34 3.06
3917 6643 1.081175 GAAGCAAAACTGCTCGCCC 60.081 57.895 0.00 0.00 45.54 6.13
3918 6644 1.795170 GAAGCAAAACTGCTCGCCCA 61.795 55.000 0.00 0.00 45.54 5.36
3940 6666 3.229276 TGTATCAAAAATGGCTTGCCG 57.771 42.857 7.18 0.00 0.00 5.69
3956 6682 1.161843 GCCGATCCCAACGAAGAAAA 58.838 50.000 0.00 0.00 0.00 2.29
3957 6683 1.538075 GCCGATCCCAACGAAGAAAAA 59.462 47.619 0.00 0.00 0.00 1.94
3958 6684 2.163613 GCCGATCCCAACGAAGAAAAAT 59.836 45.455 0.00 0.00 0.00 1.82
3959 6685 3.758300 CCGATCCCAACGAAGAAAAATG 58.242 45.455 0.00 0.00 0.00 2.32
3960 6686 3.190535 CCGATCCCAACGAAGAAAAATGT 59.809 43.478 0.00 0.00 0.00 2.71
3961 6687 4.320935 CCGATCCCAACGAAGAAAAATGTT 60.321 41.667 0.00 0.00 0.00 2.71
3962 6688 4.616802 CGATCCCAACGAAGAAAAATGTTG 59.383 41.667 0.00 0.00 40.95 3.33
3963 6689 4.993029 TCCCAACGAAGAAAAATGTTGT 57.007 36.364 0.00 0.00 39.95 3.32
3970 6696 6.354039 ACGAAGAAAAATGTTGTCGTACTT 57.646 33.333 0.00 0.00 39.71 2.24
3987 6714 2.726821 ACTTGCATCCATGGAAATCGT 58.273 42.857 20.67 9.70 37.67 3.73
4011 6738 5.599732 TGGTTCCAACAAAAATGTCTGATG 58.400 37.500 0.00 0.00 0.00 3.07
4018 6745 5.867903 ACAAAAATGTCTGATGGTTCCAA 57.132 34.783 0.00 0.00 0.00 3.53
4024 6752 5.867903 ATGTCTGATGGTTCCAACAAAAA 57.132 34.783 3.60 0.00 0.00 1.94
4025 6753 5.004922 TGTCTGATGGTTCCAACAAAAAC 57.995 39.130 3.60 3.65 0.00 2.43
4031 6759 4.559862 TGGTTCCAACAAAAACAATGGT 57.440 36.364 0.00 0.00 34.50 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.184349 GTCGACGCTTCTCTTCATCG 58.816 55.000 0.00 0.00 0.00 3.84
1 2 1.184349 CGTCGACGCTTCTCTTCATC 58.816 55.000 26.59 0.00 0.00 2.92
2 3 0.179161 CCGTCGACGCTTCTCTTCAT 60.179 55.000 31.73 0.00 38.18 2.57
3 4 1.209383 CCGTCGACGCTTCTCTTCA 59.791 57.895 31.73 0.00 38.18 3.02
4 5 0.109873 TTCCGTCGACGCTTCTCTTC 60.110 55.000 31.73 0.00 38.18 2.87
5 6 0.109689 CTTCCGTCGACGCTTCTCTT 60.110 55.000 31.73 0.00 38.18 2.85
6 7 1.502640 CTTCCGTCGACGCTTCTCT 59.497 57.895 31.73 0.00 38.18 3.10
7 8 1.514443 CCTTCCGTCGACGCTTCTC 60.514 63.158 31.73 0.00 38.18 2.87
8 9 1.313812 ATCCTTCCGTCGACGCTTCT 61.314 55.000 31.73 10.89 38.18 2.85
9 10 0.866483 GATCCTTCCGTCGACGCTTC 60.866 60.000 31.73 16.17 38.18 3.86
10 11 1.139095 GATCCTTCCGTCGACGCTT 59.861 57.895 31.73 11.77 38.18 4.68
11 12 2.772691 GGATCCTTCCGTCGACGCT 61.773 63.158 31.73 11.25 38.18 5.07
12 13 2.278661 GGATCCTTCCGTCGACGC 60.279 66.667 31.73 15.99 38.18 5.19
13 14 0.801067 GTTGGATCCTTCCGTCGACG 60.801 60.000 30.33 30.33 45.89 5.12
14 15 0.459759 GGTTGGATCCTTCCGTCGAC 60.460 60.000 14.23 5.18 45.89 4.20
15 16 0.613853 AGGTTGGATCCTTCCGTCGA 60.614 55.000 14.23 0.00 45.89 4.20
16 17 0.460284 CAGGTTGGATCCTTCCGTCG 60.460 60.000 14.23 6.03 45.89 5.12
17 18 0.613777 ACAGGTTGGATCCTTCCGTC 59.386 55.000 14.23 0.00 45.89 4.79
18 19 1.831736 CTACAGGTTGGATCCTTCCGT 59.168 52.381 14.23 16.95 45.89 4.69
19 20 2.108168 TCTACAGGTTGGATCCTTCCG 58.892 52.381 14.23 12.82 45.89 4.30
20 21 2.838202 TGTCTACAGGTTGGATCCTTCC 59.162 50.000 14.23 14.69 42.94 3.46
21 22 3.260884 TGTGTCTACAGGTTGGATCCTTC 59.739 47.826 14.23 5.77 35.37 3.46
22 23 3.008049 GTGTGTCTACAGGTTGGATCCTT 59.992 47.826 14.23 0.00 37.52 3.36
23 24 2.567615 GTGTGTCTACAGGTTGGATCCT 59.432 50.000 14.23 0.00 37.52 3.24
24 25 2.301870 TGTGTGTCTACAGGTTGGATCC 59.698 50.000 4.20 4.20 37.52 3.36
25 26 3.678056 TGTGTGTCTACAGGTTGGATC 57.322 47.619 0.00 0.00 37.52 3.36
26 27 4.381612 CGTATGTGTGTCTACAGGTTGGAT 60.382 45.833 0.00 0.00 37.52 3.41
27 28 3.057104 CGTATGTGTGTCTACAGGTTGGA 60.057 47.826 0.00 0.00 37.52 3.53
28 29 3.250744 CGTATGTGTGTCTACAGGTTGG 58.749 50.000 0.00 0.00 37.52 3.77
29 30 3.909430 ACGTATGTGTGTCTACAGGTTG 58.091 45.455 0.00 0.00 37.52 3.77
30 31 5.710513 TTACGTATGTGTGTCTACAGGTT 57.289 39.130 0.00 0.00 37.52 3.50
31 32 5.464168 GTTTACGTATGTGTGTCTACAGGT 58.536 41.667 0.00 0.00 37.52 4.00
32 33 4.556135 CGTTTACGTATGTGTGTCTACAGG 59.444 45.833 0.00 0.00 34.20 4.00
33 34 5.384787 TCGTTTACGTATGTGTGTCTACAG 58.615 41.667 0.00 0.00 37.83 2.74
34 35 5.355467 TCGTTTACGTATGTGTGTCTACA 57.645 39.130 0.00 0.00 40.80 2.74
35 36 5.219659 CGTTCGTTTACGTATGTGTGTCTAC 60.220 44.000 0.00 0.00 40.80 2.59
36 37 4.845598 CGTTCGTTTACGTATGTGTGTCTA 59.154 41.667 0.00 0.00 40.80 2.59
37 38 3.665409 CGTTCGTTTACGTATGTGTGTCT 59.335 43.478 0.00 0.00 40.80 3.41
38 39 3.663564 TCGTTCGTTTACGTATGTGTGTC 59.336 43.478 0.00 0.00 42.01 3.67
39 40 3.626977 TCGTTCGTTTACGTATGTGTGT 58.373 40.909 0.00 0.00 42.01 3.72
40 41 4.085670 TGTTCGTTCGTTTACGTATGTGTG 60.086 41.667 0.00 0.00 42.01 3.82
41 42 4.041049 TGTTCGTTCGTTTACGTATGTGT 58.959 39.130 0.00 0.00 42.01 3.72
42 43 4.368544 GTGTTCGTTCGTTTACGTATGTG 58.631 43.478 0.00 0.00 42.01 3.21
43 44 3.425193 GGTGTTCGTTCGTTTACGTATGT 59.575 43.478 0.00 0.00 42.01 2.29
44 45 3.478598 CGGTGTTCGTTCGTTTACGTATG 60.479 47.826 0.00 0.00 42.01 2.39
45 46 2.656422 CGGTGTTCGTTCGTTTACGTAT 59.344 45.455 0.00 0.00 42.01 3.06
46 47 2.040524 CGGTGTTCGTTCGTTTACGTA 58.959 47.619 1.88 0.00 42.01 3.57
47 48 0.845768 CGGTGTTCGTTCGTTTACGT 59.154 50.000 1.88 0.00 42.01 3.57
48 49 1.119635 TCGGTGTTCGTTCGTTTACG 58.880 50.000 0.00 0.00 42.68 3.18
49 50 2.788786 TCTTCGGTGTTCGTTCGTTTAC 59.211 45.455 0.00 0.00 40.32 2.01
50 51 2.788786 GTCTTCGGTGTTCGTTCGTTTA 59.211 45.455 0.00 0.00 40.32 2.01
51 52 1.589779 GTCTTCGGTGTTCGTTCGTTT 59.410 47.619 0.00 0.00 40.32 3.60
52 53 1.203065 GTCTTCGGTGTTCGTTCGTT 58.797 50.000 0.00 0.00 40.32 3.85
53 54 0.101040 TGTCTTCGGTGTTCGTTCGT 59.899 50.000 0.00 0.00 40.32 3.85
54 55 1.202203 TTGTCTTCGGTGTTCGTTCG 58.798 50.000 0.00 0.00 40.32 3.95
55 56 2.595881 CGTTTGTCTTCGGTGTTCGTTC 60.596 50.000 0.00 0.00 40.32 3.95
56 57 1.325338 CGTTTGTCTTCGGTGTTCGTT 59.675 47.619 0.00 0.00 40.32 3.85
57 58 0.925466 CGTTTGTCTTCGGTGTTCGT 59.075 50.000 0.00 0.00 40.32 3.85
58 59 0.382636 GCGTTTGTCTTCGGTGTTCG 60.383 55.000 0.00 0.00 40.90 3.95
59 60 0.935196 AGCGTTTGTCTTCGGTGTTC 59.065 50.000 0.00 0.00 36.46 3.18
60 61 0.655733 CAGCGTTTGTCTTCGGTGTT 59.344 50.000 8.26 0.00 45.94 3.32
61 62 2.307363 CAGCGTTTGTCTTCGGTGT 58.693 52.632 8.26 0.00 45.94 4.16
66 67 2.755836 TTTGCTCAGCGTTTGTCTTC 57.244 45.000 0.00 0.00 0.00 2.87
78 79 1.554617 TGATCTCGTGGGATTTGCTCA 59.445 47.619 0.00 0.00 0.00 4.26
81 82 0.659957 GCTGATCTCGTGGGATTTGC 59.340 55.000 0.00 0.00 0.00 3.68
83 84 1.745141 GCAGCTGATCTCGTGGGATTT 60.745 52.381 20.43 0.00 0.00 2.17
113 114 1.553690 ATGCTTCTACCACCGCCAGT 61.554 55.000 0.00 0.00 0.00 4.00
115 116 1.220749 GATGCTTCTACCACCGCCA 59.779 57.895 0.00 0.00 0.00 5.69
120 121 1.883084 CCGGCGATGCTTCTACCAC 60.883 63.158 9.30 0.00 0.00 4.16
121 122 2.499205 CCGGCGATGCTTCTACCA 59.501 61.111 9.30 0.00 0.00 3.25
122 123 2.280186 CCCGGCGATGCTTCTACC 60.280 66.667 9.30 0.00 0.00 3.18
137 138 2.271173 CAGTTTAGCCCCCGTCCC 59.729 66.667 0.00 0.00 0.00 4.46
141 142 1.077716 CCTTCCAGTTTAGCCCCCG 60.078 63.158 0.00 0.00 0.00 5.73
145 146 2.881111 AAGGTCCTTCCAGTTTAGCC 57.119 50.000 0.00 0.00 39.02 3.93
150 151 6.394345 AGATGAAATAAGGTCCTTCCAGTT 57.606 37.500 7.61 0.00 39.02 3.16
151 152 6.012508 TGAAGATGAAATAAGGTCCTTCCAGT 60.013 38.462 7.61 0.00 39.02 4.00
178 179 1.002087 AGACGAGGAAGCATCGGTTTT 59.998 47.619 6.44 0.00 44.36 2.43
185 186 5.163364 ACATGATAAGAAGACGAGGAAGCAT 60.163 40.000 0.00 0.00 0.00 3.79
186 187 4.160439 ACATGATAAGAAGACGAGGAAGCA 59.840 41.667 0.00 0.00 0.00 3.91
190 191 4.705023 TGTGACATGATAAGAAGACGAGGA 59.295 41.667 0.00 0.00 0.00 3.71
243 245 3.695606 GGCGGGACAGCTCTGACA 61.696 66.667 3.60 0.00 37.29 3.58
244 246 4.803426 CGGCGGGACAGCTCTGAC 62.803 72.222 0.00 0.00 37.29 3.51
283 285 1.064463 TGGTCCTTGAATCATGGAGGC 60.064 52.381 16.92 7.50 38.16 4.70
292 294 3.385111 GTCGTCTCCTATGGTCCTTGAAT 59.615 47.826 0.00 0.00 0.00 2.57
294 296 2.291346 TGTCGTCTCCTATGGTCCTTGA 60.291 50.000 0.00 0.00 0.00 3.02
298 300 0.381089 CGTGTCGTCTCCTATGGTCC 59.619 60.000 0.00 0.00 0.00 4.46
301 303 0.381089 GTCCGTGTCGTCTCCTATGG 59.619 60.000 0.00 0.00 0.00 2.74
324 326 3.793775 TTCTTTGTCGGCGCCGTCA 62.794 57.895 44.16 41.06 40.74 4.35
326 328 2.181521 TTTTCTTTGTCGGCGCCGT 61.182 52.632 44.16 0.00 40.74 5.68
337 339 8.432805 TGAAGAACTCTCATCTAGGTTTTCTTT 58.567 33.333 0.00 0.00 32.58 2.52
344 353 7.962995 TTACATGAAGAACTCTCATCTAGGT 57.037 36.000 0.00 0.00 0.00 3.08
351 360 8.450578 AACATTGTTTACATGAAGAACTCTCA 57.549 30.769 0.00 0.00 0.00 3.27
373 382 9.529325 CATCTAACTCTAATCCATCGTTTAACA 57.471 33.333 0.00 0.00 0.00 2.41
424 433 2.623878 TAGGGTTTGTTGCACGAGAA 57.376 45.000 0.00 0.00 0.00 2.87
447 456 6.021596 GGTCGATTTTGCACATAACACTTAG 58.978 40.000 0.00 0.00 0.00 2.18
469 478 6.916360 ACACAAACCATCAATTATTGAGGT 57.084 33.333 16.65 17.00 43.98 3.85
503 512 7.934855 AAGAGTTTTCAAGCATGATAGTGAT 57.065 32.000 0.00 0.00 34.96 3.06
507 516 8.671921 ACACATAAGAGTTTTCAAGCATGATAG 58.328 33.333 0.00 0.00 34.96 2.08
510 519 6.486320 TCACACATAAGAGTTTTCAAGCATGA 59.514 34.615 0.00 0.00 0.00 3.07
516 525 5.769662 AGGCATCACACATAAGAGTTTTCAA 59.230 36.000 0.00 0.00 0.00 2.69
517 526 5.316167 AGGCATCACACATAAGAGTTTTCA 58.684 37.500 0.00 0.00 0.00 2.69
527 536 4.855105 GCCGAGGCATCACACATA 57.145 55.556 9.58 0.00 41.49 2.29
542 551 3.694566 ACGAAGGGAGTATCAATTTTGCC 59.305 43.478 0.00 0.00 36.25 4.52
543 552 4.201920 GGACGAAGGGAGTATCAATTTTGC 60.202 45.833 0.00 0.00 36.25 3.68
544 553 4.034048 CGGACGAAGGGAGTATCAATTTTG 59.966 45.833 0.00 0.00 36.25 2.44
552 562 4.648307 AGTAATTTCGGACGAAGGGAGTAT 59.352 41.667 7.25 0.00 35.38 2.12
559 569 2.525096 CGACGAGTAATTTCGGACGAAG 59.475 50.000 7.25 0.00 44.57 3.79
560 570 2.508867 CGACGAGTAATTTCGGACGAA 58.491 47.619 2.62 2.62 44.57 3.85
562 572 0.564767 GCGACGAGTAATTTCGGACG 59.435 55.000 0.00 13.12 44.57 4.79
563 573 1.844962 GAGCGACGAGTAATTTCGGAC 59.155 52.381 0.00 0.00 44.57 4.79
564 574 1.469703 TGAGCGACGAGTAATTTCGGA 59.530 47.619 0.00 0.00 44.57 4.55
566 576 3.364023 AGTTTGAGCGACGAGTAATTTCG 59.636 43.478 0.00 0.00 45.70 3.46
568 578 4.056050 ACAGTTTGAGCGACGAGTAATTT 58.944 39.130 0.00 0.00 0.00 1.82
576 586 3.180584 GCATATCTACAGTTTGAGCGACG 59.819 47.826 0.00 0.00 0.00 5.12
579 589 3.865164 TGTGCATATCTACAGTTTGAGCG 59.135 43.478 0.00 0.00 0.00 5.03
601 611 7.506938 ACGATCAGATATTTTGAATGGGGAAAT 59.493 33.333 0.00 0.00 0.00 2.17
608 618 6.974048 TGCCAAACGATCAGATATTTTGAATG 59.026 34.615 14.20 3.67 30.23 2.67
610 620 6.321717 GTGCCAAACGATCAGATATTTTGAA 58.678 36.000 14.20 3.96 30.23 2.69
611 621 5.879237 GTGCCAAACGATCAGATATTTTGA 58.121 37.500 14.20 0.00 30.23 2.69
631 641 0.172803 ACGACTGGTTATCCTCGTGC 59.827 55.000 6.38 0.00 41.08 5.34
661 676 4.425099 AGCTGTACGAGGACTGCT 57.575 55.556 13.11 13.11 46.24 4.24
667 682 3.528370 CGGGGGAGCTGTACGAGG 61.528 72.222 0.00 0.00 0.00 4.63
730 746 1.153823 GGATGGACGTGACCTGTCG 60.154 63.158 0.00 0.00 37.22 4.35
731 747 1.153823 CGGATGGACGTGACCTGTC 60.154 63.158 0.00 0.00 35.60 3.51
732 748 2.970639 CGGATGGACGTGACCTGT 59.029 61.111 0.00 0.00 0.00 4.00
958 975 2.032528 TGGGTTCGCTGCTCTTGG 59.967 61.111 0.00 0.00 0.00 3.61
987 1004 2.749865 CGCCATGTACCCTGCGTTG 61.750 63.158 10.67 0.00 41.95 4.10
988 1005 2.435938 CGCCATGTACCCTGCGTT 60.436 61.111 10.67 0.00 41.95 4.84
1011 1028 1.519719 GAGACGGAGCAGAGCCATT 59.480 57.895 0.00 0.00 0.00 3.16
1076 1093 4.804420 AGAGGAGGATGCGGGCCA 62.804 66.667 4.39 0.00 0.00 5.36
1153 1178 0.030369 GGTGGAGGTATACTGTCGCG 59.970 60.000 0.00 0.00 0.00 5.87
1164 1189 0.535102 CGTTTGAGCAAGGTGGAGGT 60.535 55.000 0.00 0.00 0.00 3.85
1183 1211 2.609459 CCAAACAGACAGTGTCACTCAC 59.391 50.000 24.73 0.17 46.46 3.51
1184 1212 2.905075 CCAAACAGACAGTGTCACTCA 58.095 47.619 24.73 0.00 39.03 3.41
1185 1213 1.599542 GCCAAACAGACAGTGTCACTC 59.400 52.381 24.73 0.00 39.03 3.51
1186 1214 1.210478 AGCCAAACAGACAGTGTCACT 59.790 47.619 24.73 0.00 39.03 3.41
1187 1215 1.599542 GAGCCAAACAGACAGTGTCAC 59.400 52.381 24.73 0.00 39.03 3.67
1347 1375 3.500014 GAAGGAAGGAACGTACGAAGAG 58.500 50.000 24.41 0.00 0.00 2.85
1530 1563 0.322008 CTGGAAGAAGTGGAGCCACC 60.322 60.000 15.69 2.14 41.93 4.61
1537 1570 0.607489 CCTGCACCTGGAAGAAGTGG 60.607 60.000 0.00 0.00 34.07 4.00
1678 1732 7.039714 AGTCTTCAGTTGTGTGATAGTGATACA 60.040 37.037 0.00 0.00 0.00 2.29
1767 1821 0.972883 AGTGAAGGTGACAGAGGAGC 59.027 55.000 0.00 0.00 0.00 4.70
1787 1863 5.810587 CAGGGAAATGATGAGCAAAAATCTG 59.189 40.000 0.00 0.00 0.00 2.90
1788 1864 5.626116 GCAGGGAAATGATGAGCAAAAATCT 60.626 40.000 0.00 0.00 0.00 2.40
1792 1868 2.234414 GGCAGGGAAATGATGAGCAAAA 59.766 45.455 0.00 0.00 0.00 2.44
1816 1892 0.673956 GAACGAGGGAGAGGCAAACC 60.674 60.000 0.00 0.00 0.00 3.27
1817 1893 0.034896 TGAACGAGGGAGAGGCAAAC 59.965 55.000 0.00 0.00 0.00 2.93
1821 1897 2.156051 AACGTGAACGAGGGAGAGGC 62.156 60.000 10.26 0.00 43.02 4.70
1827 1903 0.032952 TCTTCCAACGTGAACGAGGG 59.967 55.000 10.26 10.11 43.02 4.30
2040 2116 0.037326 GGACGCTGATGGAGTTGACA 60.037 55.000 0.00 0.00 0.00 3.58
2094 2170 1.874019 CATTGACGGACGGAGCGAG 60.874 63.158 0.00 0.00 0.00 5.03
2098 2174 0.744414 AATGCCATTGACGGACGGAG 60.744 55.000 0.00 0.00 0.00 4.63
2099 2175 0.742990 GAATGCCATTGACGGACGGA 60.743 55.000 0.00 0.00 0.00 4.69
2100 2176 0.744414 AGAATGCCATTGACGGACGG 60.744 55.000 0.00 0.00 0.00 4.79
2101 2177 0.374758 CAGAATGCCATTGACGGACG 59.625 55.000 0.00 0.00 0.00 4.79
2143 2219 4.891992 TCTGTAACTGAGGAAGGAAAGG 57.108 45.455 0.00 0.00 0.00 3.11
2144 2220 5.123027 GCAATCTGTAACTGAGGAAGGAAAG 59.877 44.000 0.00 0.00 0.00 2.62
2145 2221 5.003804 GCAATCTGTAACTGAGGAAGGAAA 58.996 41.667 0.00 0.00 0.00 3.13
2146 2222 4.565652 GGCAATCTGTAACTGAGGAAGGAA 60.566 45.833 0.00 0.00 0.00 3.36
2147 2223 3.055094 GGCAATCTGTAACTGAGGAAGGA 60.055 47.826 0.00 0.00 0.00 3.36
2148 2224 3.054802 AGGCAATCTGTAACTGAGGAAGG 60.055 47.826 0.00 0.00 0.00 3.46
2149 2225 4.213564 AGGCAATCTGTAACTGAGGAAG 57.786 45.455 0.00 0.00 0.00 3.46
2150 2226 4.777896 AGTAGGCAATCTGTAACTGAGGAA 59.222 41.667 0.00 0.00 0.00 3.36
2151 2227 4.353777 AGTAGGCAATCTGTAACTGAGGA 58.646 43.478 0.00 0.00 0.00 3.71
2152 2228 4.442192 GGAGTAGGCAATCTGTAACTGAGG 60.442 50.000 0.00 0.00 0.00 3.86
2153 2229 4.688021 GGAGTAGGCAATCTGTAACTGAG 58.312 47.826 0.00 0.00 0.00 3.35
2154 2230 3.130516 CGGAGTAGGCAATCTGTAACTGA 59.869 47.826 0.00 0.00 0.00 3.41
2155 2231 3.130516 TCGGAGTAGGCAATCTGTAACTG 59.869 47.826 0.00 0.00 0.00 3.16
2156 2232 3.130693 GTCGGAGTAGGCAATCTGTAACT 59.869 47.826 0.00 0.00 0.00 2.24
2157 2233 3.130693 AGTCGGAGTAGGCAATCTGTAAC 59.869 47.826 0.00 0.00 0.00 2.50
2158 2234 3.362706 AGTCGGAGTAGGCAATCTGTAA 58.637 45.455 0.00 0.00 0.00 2.41
2159 2235 2.950309 GAGTCGGAGTAGGCAATCTGTA 59.050 50.000 0.00 0.00 0.00 2.74
2160 2236 1.751924 GAGTCGGAGTAGGCAATCTGT 59.248 52.381 0.00 0.00 0.00 3.41
2161 2237 1.067821 GGAGTCGGAGTAGGCAATCTG 59.932 57.143 0.00 0.00 0.00 2.90
2162 2238 1.063567 AGGAGTCGGAGTAGGCAATCT 60.064 52.381 0.00 0.00 0.00 2.40
2163 2239 1.404843 AGGAGTCGGAGTAGGCAATC 58.595 55.000 0.00 0.00 0.00 2.67
2164 2240 2.588620 CTAGGAGTCGGAGTAGGCAAT 58.411 52.381 0.00 0.00 0.00 3.56
2165 2241 2.022754 GCTAGGAGTCGGAGTAGGCAA 61.023 57.143 0.00 0.00 0.00 4.52
2166 2242 0.465824 GCTAGGAGTCGGAGTAGGCA 60.466 60.000 0.00 0.00 0.00 4.75
2167 2243 0.179012 AGCTAGGAGTCGGAGTAGGC 60.179 60.000 0.00 0.00 0.00 3.93
2168 2244 3.140623 GTTAGCTAGGAGTCGGAGTAGG 58.859 54.545 0.00 0.00 0.00 3.18
2169 2245 3.810941 CAGTTAGCTAGGAGTCGGAGTAG 59.189 52.174 0.00 0.00 0.00 2.57
2170 2246 3.453717 TCAGTTAGCTAGGAGTCGGAGTA 59.546 47.826 0.00 0.00 0.00 2.59
2171 2247 2.239150 TCAGTTAGCTAGGAGTCGGAGT 59.761 50.000 0.00 0.00 0.00 3.85
2172 2248 2.920524 TCAGTTAGCTAGGAGTCGGAG 58.079 52.381 0.00 0.00 0.00 4.63
2173 2249 3.361281 TTCAGTTAGCTAGGAGTCGGA 57.639 47.619 0.00 0.00 0.00 4.55
2174 2250 3.886505 AGATTCAGTTAGCTAGGAGTCGG 59.113 47.826 0.00 0.00 0.00 4.79
2175 2251 4.819630 AGAGATTCAGTTAGCTAGGAGTCG 59.180 45.833 0.00 0.00 0.00 4.18
2176 2252 6.709018 AAGAGATTCAGTTAGCTAGGAGTC 57.291 41.667 0.00 0.58 0.00 3.36
2177 2253 8.776061 AATAAGAGATTCAGTTAGCTAGGAGT 57.224 34.615 0.00 0.00 0.00 3.85
2179 2255 9.823647 CAAAATAAGAGATTCAGTTAGCTAGGA 57.176 33.333 0.00 0.00 0.00 2.94
2212 2308 4.704833 ATGGACACGCAAGCGCCT 62.705 61.111 15.09 0.00 44.19 5.52
2297 2393 2.251818 TGAGGCAGTGAAGAAGCTACT 58.748 47.619 0.00 0.00 0.00 2.57
2298 2394 2.751166 TGAGGCAGTGAAGAAGCTAC 57.249 50.000 0.00 0.00 0.00 3.58
2299 2395 2.833943 TGATGAGGCAGTGAAGAAGCTA 59.166 45.455 0.00 0.00 0.00 3.32
2300 2396 1.627329 TGATGAGGCAGTGAAGAAGCT 59.373 47.619 0.00 0.00 0.00 3.74
2301 2397 2.008329 CTGATGAGGCAGTGAAGAAGC 58.992 52.381 0.00 0.00 0.00 3.86
2308 2404 1.202510 GGAGTAGCTGATGAGGCAGTG 60.203 57.143 0.00 0.00 38.17 3.66
2309 2405 1.118838 GGAGTAGCTGATGAGGCAGT 58.881 55.000 0.00 0.00 38.17 4.40
2336 2432 1.909376 GCAATGAGCAGACAAGCATG 58.091 50.000 0.00 0.00 44.79 4.06
2357 2453 9.498176 CCAGGTAAGTATAGTAAACAACAACTT 57.502 33.333 0.00 0.00 34.31 2.66
2359 2455 8.837788 ACCAGGTAAGTATAGTAAACAACAAC 57.162 34.615 0.00 0.00 0.00 3.32
2360 2456 9.927668 GTACCAGGTAAGTATAGTAAACAACAA 57.072 33.333 0.00 0.00 0.00 2.83
2364 2460 9.258629 ACATGTACCAGGTAAGTATAGTAAACA 57.741 33.333 0.00 0.00 0.00 2.83
2365 2461 9.525409 CACATGTACCAGGTAAGTATAGTAAAC 57.475 37.037 0.00 0.00 0.00 2.01
2366 2462 9.258629 ACACATGTACCAGGTAAGTATAGTAAA 57.741 33.333 0.00 0.00 0.00 2.01
2367 2463 8.827832 ACACATGTACCAGGTAAGTATAGTAA 57.172 34.615 0.00 0.00 0.00 2.24
2368 2464 8.689061 CAACACATGTACCAGGTAAGTATAGTA 58.311 37.037 0.00 0.00 0.00 1.82
2369 2465 7.364408 CCAACACATGTACCAGGTAAGTATAGT 60.364 40.741 0.00 0.00 0.00 2.12
2370 2466 6.984474 CCAACACATGTACCAGGTAAGTATAG 59.016 42.308 0.00 0.00 0.00 1.31
2371 2467 6.668718 TCCAACACATGTACCAGGTAAGTATA 59.331 38.462 0.00 0.00 0.00 1.47
2372 2468 5.486063 TCCAACACATGTACCAGGTAAGTAT 59.514 40.000 0.00 0.00 0.00 2.12
2373 2469 4.839550 TCCAACACATGTACCAGGTAAGTA 59.160 41.667 0.00 0.00 0.00 2.24
2374 2470 3.649023 TCCAACACATGTACCAGGTAAGT 59.351 43.478 0.00 0.00 0.00 2.24
2375 2471 4.280436 TCCAACACATGTACCAGGTAAG 57.720 45.455 0.00 0.00 0.00 2.34
2376 2472 4.534500 AGATCCAACACATGTACCAGGTAA 59.466 41.667 0.00 0.00 0.00 2.85
2377 2473 4.081142 CAGATCCAACACATGTACCAGGTA 60.081 45.833 0.00 0.00 0.00 3.08
2378 2474 2.912956 AGATCCAACACATGTACCAGGT 59.087 45.455 0.00 0.00 0.00 4.00
2379 2475 3.273434 CAGATCCAACACATGTACCAGG 58.727 50.000 0.00 0.00 0.00 4.45
2380 2476 3.935203 GACAGATCCAACACATGTACCAG 59.065 47.826 0.00 0.00 0.00 4.00
2381 2477 3.326297 TGACAGATCCAACACATGTACCA 59.674 43.478 0.00 0.00 0.00 3.25
2382 2478 3.935203 CTGACAGATCCAACACATGTACC 59.065 47.826 0.00 0.00 0.00 3.34
2383 2479 4.569943 ACTGACAGATCCAACACATGTAC 58.430 43.478 10.08 0.00 0.00 2.90
2384 2480 4.890158 ACTGACAGATCCAACACATGTA 57.110 40.909 10.08 0.00 0.00 2.29
2385 2481 3.777106 ACTGACAGATCCAACACATGT 57.223 42.857 10.08 0.00 0.00 3.21
2386 2482 5.065602 CCAATACTGACAGATCCAACACATG 59.934 44.000 10.08 0.00 0.00 3.21
2387 2483 5.188434 CCAATACTGACAGATCCAACACAT 58.812 41.667 10.08 0.00 0.00 3.21
2388 2484 4.565444 CCCAATACTGACAGATCCAACACA 60.565 45.833 10.08 0.00 0.00 3.72
2389 2485 3.941483 CCCAATACTGACAGATCCAACAC 59.059 47.826 10.08 0.00 0.00 3.32
2390 2486 3.843619 TCCCAATACTGACAGATCCAACA 59.156 43.478 10.08 0.00 0.00 3.33
2442 2538 2.124277 TCGACCTCGATCTTCTCCAA 57.876 50.000 0.00 0.00 44.22 3.53
2528 2627 2.871022 GCAGTTCATGATGAGCTACTGG 59.129 50.000 20.94 8.37 35.71 4.00
2709 2812 1.539065 CCGGCAAGCAGAGATCGTATT 60.539 52.381 0.00 0.00 0.00 1.89
2710 2813 0.032678 CCGGCAAGCAGAGATCGTAT 59.967 55.000 0.00 0.00 0.00 3.06
2711 2814 1.437573 CCGGCAAGCAGAGATCGTA 59.562 57.895 0.00 0.00 0.00 3.43
2712 2815 2.185350 CCGGCAAGCAGAGATCGT 59.815 61.111 0.00 0.00 0.00 3.73
2713 2816 2.587194 CCCGGCAAGCAGAGATCG 60.587 66.667 0.00 0.00 0.00 3.69
2738 2841 0.666274 TCAGACGTTGATCGGTGTGC 60.666 55.000 0.00 0.00 44.69 4.57
2742 2845 2.814280 AGTTTCAGACGTTGATCGGT 57.186 45.000 0.00 0.00 44.69 4.69
2749 2852 2.354821 GCAGACCAAAGTTTCAGACGTT 59.645 45.455 0.00 0.00 0.00 3.99
2751 2854 2.213499 AGCAGACCAAAGTTTCAGACG 58.787 47.619 0.00 0.00 0.00 4.18
2762 2865 1.600636 CGCCCAAGAAGCAGACCAA 60.601 57.895 0.00 0.00 0.00 3.67
2806 2921 0.681564 AGTCGATCTTCTCCACCGCT 60.682 55.000 0.00 0.00 0.00 5.52
3059 3177 4.779733 ACCCGGCCGAGACCTCAT 62.780 66.667 30.73 0.00 0.00 2.90
3061 3179 4.144703 GAACCCGGCCGAGACCTC 62.145 72.222 30.73 11.76 0.00 3.85
3062 3180 4.698625 AGAACCCGGCCGAGACCT 62.699 66.667 30.73 15.39 0.00 3.85
3063 3181 3.660732 GAAGAACCCGGCCGAGACC 62.661 68.421 30.73 13.14 0.00 3.85
3064 3182 2.125633 GAAGAACCCGGCCGAGAC 60.126 66.667 30.73 13.66 0.00 3.36
3081 3199 0.799917 CCGAGCATCACAGTGAGACG 60.800 60.000 9.64 10.96 33.17 4.18
3103 3222 3.589654 TACTGCCGCCACTCTGCAC 62.590 63.158 0.00 0.00 31.51 4.57
3125 3246 1.086067 CGGCTACTCTACGACCGTGA 61.086 60.000 5.20 0.66 39.05 4.35
3128 3249 3.020627 CCGGCTACTCTACGACCG 58.979 66.667 0.00 0.00 43.44 4.79
3130 3251 2.327244 CGCCGGCTACTCTACGAC 59.673 66.667 26.68 0.00 0.00 4.34
3132 3253 2.659017 GAACCGCCGGCTACTCTACG 62.659 65.000 26.68 5.71 0.00 3.51
3147 3280 4.202020 GGCGGGATTATTCTTCAAAGAACC 60.202 45.833 7.32 4.69 46.80 3.62
3153 3286 3.897239 ACATGGCGGGATTATTCTTCAA 58.103 40.909 0.00 0.00 0.00 2.69
3154 3287 3.576078 ACATGGCGGGATTATTCTTCA 57.424 42.857 0.00 0.00 0.00 3.02
3155 3288 5.619981 GCAATACATGGCGGGATTATTCTTC 60.620 44.000 0.00 0.00 0.00 2.87
3156 3289 4.218417 GCAATACATGGCGGGATTATTCTT 59.782 41.667 0.00 0.00 0.00 2.52
3157 3290 3.758554 GCAATACATGGCGGGATTATTCT 59.241 43.478 0.00 0.00 0.00 2.40
3179 3312 9.764363 ACAGTACATCACAATATAATACTGGTG 57.236 33.333 11.86 0.00 41.40 4.17
3229 3363 5.381757 TGTACAAGAAAATACAACAGGCCT 58.618 37.500 0.00 0.00 0.00 5.19
3246 3380 7.673180 AGGTAGTACTAGCACATTTTGTACAA 58.327 34.615 28.68 3.59 36.80 2.41
3262 3402 0.624785 ACCGAGGCAGAGGTAGTACT 59.375 55.000 0.00 0.00 39.30 2.73
3266 3406 0.739561 GTACACCGAGGCAGAGGTAG 59.260 60.000 0.00 0.00 39.00 3.18
3267 3407 0.038599 TGTACACCGAGGCAGAGGTA 59.961 55.000 0.00 0.00 39.00 3.08
3269 3409 0.108615 CTTGTACACCGAGGCAGAGG 60.109 60.000 0.00 0.00 0.00 3.69
3270 3410 0.603569 ACTTGTACACCGAGGCAGAG 59.396 55.000 0.00 0.00 0.00 3.35
3272 3412 0.317160 TGACTTGTACACCGAGGCAG 59.683 55.000 0.00 0.00 37.71 4.85
3274 3414 2.000447 GAATGACTTGTACACCGAGGC 59.000 52.381 0.00 0.00 32.45 4.70
3275 3415 3.594603 AGAATGACTTGTACACCGAGG 57.405 47.619 0.00 0.00 0.00 4.63
3286 3426 9.003658 CAACTTGGAACTATACAAGAATGACTT 57.996 33.333 7.75 0.00 45.22 3.01
3287 3427 8.375506 TCAACTTGGAACTATACAAGAATGACT 58.624 33.333 7.75 0.00 45.22 3.41
3288 3428 8.443937 GTCAACTTGGAACTATACAAGAATGAC 58.556 37.037 18.87 18.87 45.22 3.06
3289 3429 8.154203 TGTCAACTTGGAACTATACAAGAATGA 58.846 33.333 7.75 8.36 45.22 2.57
3290 3430 8.322906 TGTCAACTTGGAACTATACAAGAATG 57.677 34.615 7.75 6.45 45.22 2.67
3291 3431 8.918202 TTGTCAACTTGGAACTATACAAGAAT 57.082 30.769 7.75 0.00 45.22 2.40
3292 3432 8.918202 ATTGTCAACTTGGAACTATACAAGAA 57.082 30.769 7.75 0.00 45.22 2.52
3293 3433 8.918202 AATTGTCAACTTGGAACTATACAAGA 57.082 30.769 7.75 0.00 45.22 3.02
3301 3441 9.574516 AGATAGTTAAATTGTCAACTTGGAACT 57.425 29.630 5.87 1.77 36.44 3.01
3319 3459 9.865321 GGTTGATACGCCATATTTAGATAGTTA 57.135 33.333 0.00 0.00 0.00 2.24
3320 3460 8.594550 AGGTTGATACGCCATATTTAGATAGTT 58.405 33.333 0.00 0.00 0.00 2.24
3321 3461 8.035394 CAGGTTGATACGCCATATTTAGATAGT 58.965 37.037 0.00 0.00 0.00 2.12
3322 3462 8.035394 ACAGGTTGATACGCCATATTTAGATAG 58.965 37.037 0.00 0.00 0.00 2.08
3323 3463 7.903145 ACAGGTTGATACGCCATATTTAGATA 58.097 34.615 0.00 0.00 0.00 1.98
3324 3464 6.769512 ACAGGTTGATACGCCATATTTAGAT 58.230 36.000 0.00 0.00 0.00 1.98
3325 3465 6.169557 ACAGGTTGATACGCCATATTTAGA 57.830 37.500 0.00 0.00 0.00 2.10
3326 3466 7.152645 ACTACAGGTTGATACGCCATATTTAG 58.847 38.462 0.00 0.00 0.00 1.85
3327 3467 7.058023 ACTACAGGTTGATACGCCATATTTA 57.942 36.000 0.00 0.00 0.00 1.40
3328 3468 5.925509 ACTACAGGTTGATACGCCATATTT 58.074 37.500 0.00 0.00 0.00 1.40
3329 3469 5.546621 ACTACAGGTTGATACGCCATATT 57.453 39.130 0.00 0.00 0.00 1.28
3330 3470 5.546621 AACTACAGGTTGATACGCCATAT 57.453 39.130 0.00 0.00 36.70 1.78
3331 3471 5.829391 TCTAACTACAGGTTGATACGCCATA 59.171 40.000 0.00 0.00 38.75 2.74
3332 3472 3.906720 AACTACAGGTTGATACGCCAT 57.093 42.857 0.00 0.00 36.70 4.40
3333 3473 4.018490 TCTAACTACAGGTTGATACGCCA 58.982 43.478 0.00 0.00 38.75 5.69
3334 3474 4.644103 TCTAACTACAGGTTGATACGCC 57.356 45.455 0.00 0.00 38.75 5.68
3335 3475 4.982916 CCATCTAACTACAGGTTGATACGC 59.017 45.833 0.00 0.00 38.75 4.42
3336 3476 6.145338 ACCATCTAACTACAGGTTGATACG 57.855 41.667 0.00 0.00 38.75 3.06
3337 3477 8.910944 TCTAACCATCTAACTACAGGTTGATAC 58.089 37.037 0.00 0.00 42.19 2.24
3338 3478 9.132923 CTCTAACCATCTAACTACAGGTTGATA 57.867 37.037 0.00 0.00 42.19 2.15
3339 3479 7.070074 CCTCTAACCATCTAACTACAGGTTGAT 59.930 40.741 0.00 0.00 42.19 2.57
3340 3480 6.380274 CCTCTAACCATCTAACTACAGGTTGA 59.620 42.308 0.00 0.00 42.19 3.18
3341 3481 6.407074 CCCTCTAACCATCTAACTACAGGTTG 60.407 46.154 0.00 0.00 42.19 3.77
3342 3482 5.661759 CCCTCTAACCATCTAACTACAGGTT 59.338 44.000 0.00 0.00 44.23 3.50
3343 3483 5.043582 TCCCTCTAACCATCTAACTACAGGT 60.044 44.000 0.00 0.00 0.00 4.00
3344 3484 5.302313 GTCCCTCTAACCATCTAACTACAGG 59.698 48.000 0.00 0.00 0.00 4.00
3345 3485 6.039941 CAGTCCCTCTAACCATCTAACTACAG 59.960 46.154 0.00 0.00 0.00 2.74
3346 3486 5.892119 CAGTCCCTCTAACCATCTAACTACA 59.108 44.000 0.00 0.00 0.00 2.74
3347 3487 5.892686 ACAGTCCCTCTAACCATCTAACTAC 59.107 44.000 0.00 0.00 0.00 2.73
3348 3488 6.088541 ACAGTCCCTCTAACCATCTAACTA 57.911 41.667 0.00 0.00 0.00 2.24
3349 3489 4.949121 ACAGTCCCTCTAACCATCTAACT 58.051 43.478 0.00 0.00 0.00 2.24
3350 3490 6.980416 ATACAGTCCCTCTAACCATCTAAC 57.020 41.667 0.00 0.00 0.00 2.34
3351 3491 9.310449 GATAATACAGTCCCTCTAACCATCTAA 57.690 37.037 0.00 0.00 0.00 2.10
3352 3492 7.894364 GGATAATACAGTCCCTCTAACCATCTA 59.106 40.741 0.00 0.00 0.00 1.98
3353 3493 6.726764 GGATAATACAGTCCCTCTAACCATCT 59.273 42.308 0.00 0.00 0.00 2.90
3354 3494 6.726764 AGGATAATACAGTCCCTCTAACCATC 59.273 42.308 0.00 0.00 35.00 3.51
3355 3495 6.635021 AGGATAATACAGTCCCTCTAACCAT 58.365 40.000 0.00 0.00 35.00 3.55
3356 3496 6.039415 AGGATAATACAGTCCCTCTAACCA 57.961 41.667 0.00 0.00 35.00 3.67
3357 3497 6.997942 AAGGATAATACAGTCCCTCTAACC 57.002 41.667 0.00 0.00 35.00 2.85
3358 3498 7.309928 GGCTAAGGATAATACAGTCCCTCTAAC 60.310 44.444 0.00 0.00 35.00 2.34
3359 3499 6.724905 GGCTAAGGATAATACAGTCCCTCTAA 59.275 42.308 0.00 0.00 35.00 2.10
3360 3500 6.254522 GGCTAAGGATAATACAGTCCCTCTA 58.745 44.000 0.00 0.00 35.00 2.43
3361 3501 5.088026 GGCTAAGGATAATACAGTCCCTCT 58.912 45.833 0.00 0.00 35.00 3.69
3362 3502 4.223255 GGGCTAAGGATAATACAGTCCCTC 59.777 50.000 0.00 0.00 35.00 4.30
3363 3503 4.168883 GGGCTAAGGATAATACAGTCCCT 58.831 47.826 0.00 0.00 35.00 4.20
3364 3504 3.908103 TGGGCTAAGGATAATACAGTCCC 59.092 47.826 0.00 0.00 35.00 4.46
3365 3505 4.262938 GGTGGGCTAAGGATAATACAGTCC 60.263 50.000 0.00 0.00 34.64 3.85
3366 3506 4.347000 TGGTGGGCTAAGGATAATACAGTC 59.653 45.833 0.00 0.00 0.00 3.51
3367 3507 4.303794 TGGTGGGCTAAGGATAATACAGT 58.696 43.478 0.00 0.00 0.00 3.55
3368 3508 4.974645 TGGTGGGCTAAGGATAATACAG 57.025 45.455 0.00 0.00 0.00 2.74
3369 3509 5.304686 CTTGGTGGGCTAAGGATAATACA 57.695 43.478 0.00 0.00 30.67 2.29
3378 3518 2.286365 TTGAACCTTGGTGGGCTAAG 57.714 50.000 0.00 0.00 41.11 2.18
3379 3519 2.757894 TTTGAACCTTGGTGGGCTAA 57.242 45.000 0.00 0.00 41.11 3.09
3380 3520 2.556559 GGATTTGAACCTTGGTGGGCTA 60.557 50.000 0.00 0.00 41.11 3.93
3381 3521 1.632589 GATTTGAACCTTGGTGGGCT 58.367 50.000 0.00 0.00 41.11 5.19
3382 3522 0.608130 GGATTTGAACCTTGGTGGGC 59.392 55.000 0.00 0.00 41.11 5.36
3383 3523 1.895131 CAGGATTTGAACCTTGGTGGG 59.105 52.381 0.00 0.00 41.11 4.61
3384 3524 1.895131 CCAGGATTTGAACCTTGGTGG 59.105 52.381 0.00 0.00 42.93 4.61
3385 3525 2.297033 CACCAGGATTTGAACCTTGGTG 59.703 50.000 5.13 5.13 43.12 4.17
3386 3526 2.597455 CACCAGGATTTGAACCTTGGT 58.403 47.619 0.00 0.00 38.47 3.67
3387 3527 1.273327 GCACCAGGATTTGAACCTTGG 59.727 52.381 0.00 0.00 35.35 3.61
3388 3528 2.229784 GAGCACCAGGATTTGAACCTTG 59.770 50.000 0.00 0.00 35.35 3.61
3389 3529 2.519013 GAGCACCAGGATTTGAACCTT 58.481 47.619 0.00 0.00 35.35 3.50
3390 3530 1.611673 CGAGCACCAGGATTTGAACCT 60.612 52.381 0.00 0.00 38.40 3.50
3391 3531 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
3392 3532 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
3393 3533 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
3394 3534 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
3395 3535 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
3396 3536 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
3397 3537 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
3398 3538 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
3399 3539 2.418368 AATAAATGCGAGCACCAGGA 57.582 45.000 0.00 0.00 0.00 3.86
3400 3540 2.684881 AGAAATAAATGCGAGCACCAGG 59.315 45.455 0.00 0.00 0.00 4.45
3401 3541 3.488047 CCAGAAATAAATGCGAGCACCAG 60.488 47.826 0.00 0.00 0.00 4.00
3402 3542 2.423185 CCAGAAATAAATGCGAGCACCA 59.577 45.455 0.00 0.00 0.00 4.17
3403 3543 2.682856 TCCAGAAATAAATGCGAGCACC 59.317 45.455 0.00 0.00 0.00 5.01
3404 3544 4.558538 ATCCAGAAATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
3405 3545 6.691754 TTAATCCAGAAATAAATGCGAGCA 57.308 33.333 0.00 0.00 0.00 4.26
3406 3546 7.985634 TTTTAATCCAGAAATAAATGCGAGC 57.014 32.000 0.00 0.00 0.00 5.03
3457 3597 2.355193 GCCCAAATTTAGGCCGGCA 61.355 57.895 30.85 7.96 43.76 5.69
3465 3605 0.885196 GTGCGACTGGCCCAAATTTA 59.115 50.000 0.00 0.00 42.61 1.40
3477 3617 2.684843 GGACGAGTACGGTGCGACT 61.685 63.158 0.00 0.00 44.46 4.18
3483 3623 1.959042 ACATATCGGACGAGTACGGT 58.041 50.000 8.09 3.11 44.46 4.83
3490 3630 5.120519 GGTTAAAACACAACATATCGGACGA 59.879 40.000 0.00 0.00 0.00 4.20
3492 3632 5.106987 ACGGTTAAAACACAACATATCGGAC 60.107 40.000 0.00 0.00 0.00 4.79
3500 3640 4.025563 CGATCTGACGGTTAAAACACAACA 60.026 41.667 0.00 0.00 0.00 3.33
3502 3642 4.025563 CACGATCTGACGGTTAAAACACAA 60.026 41.667 0.00 0.00 37.61 3.33
3588 3728 1.134281 GTCGTCTCGTTCTCGTCCC 59.866 63.158 0.00 0.00 38.33 4.46
3592 3732 0.518764 CGAAGGTCGTCTCGTTCTCG 60.519 60.000 0.00 0.00 34.72 4.04
3599 3739 3.315972 GAGCTTCGAAGGTCGTCTC 57.684 57.895 33.95 22.78 42.77 3.36
3612 3756 4.514577 CGATGGTCCGGCGAGCTT 62.515 66.667 9.30 2.45 37.40 3.74
3627 3771 3.131478 TGATCCAGCGAGCGACGA 61.131 61.111 0.00 0.00 45.77 4.20
3637 3781 2.401766 GCCAGCAACGGTGATCCAG 61.402 63.158 3.55 0.00 32.22 3.86
3664 3808 0.733150 TGACGATCTGGTGAGTAGCG 59.267 55.000 0.00 0.00 0.00 4.26
3681 3825 2.031012 CAAGCGGGTGAGCAGTGA 59.969 61.111 0.00 0.00 40.15 3.41
3719 3863 0.611896 GGTGGGGTGGAGGTTTGATG 60.612 60.000 0.00 0.00 0.00 3.07
3731 3875 3.869934 TGGAGGTGGAGGTGGGGT 61.870 66.667 0.00 0.00 0.00 4.95
3734 3878 2.603473 TCGTGGAGGTGGAGGTGG 60.603 66.667 0.00 0.00 0.00 4.61
3739 3883 2.200370 AGTGGTCGTGGAGGTGGA 59.800 61.111 0.00 0.00 0.00 4.02
3740 3884 2.040009 AACAGTGGTCGTGGAGGTGG 62.040 60.000 0.00 0.00 0.00 4.61
3745 3889 3.957919 TGGAACAGTGGTCGTGGA 58.042 55.556 1.17 0.00 0.00 4.02
3862 5574 5.860941 TTTGCTAGAACCAACAATTCCAA 57.139 34.783 0.00 0.00 0.00 3.53
3873 5585 5.585047 ACCGACATCTATTTTTGCTAGAACC 59.415 40.000 0.00 0.00 0.00 3.62
3878 5590 6.403200 GCTTCAACCGACATCTATTTTTGCTA 60.403 38.462 0.00 0.00 0.00 3.49
3893 5605 3.936585 GCAGTTTTGCTTCAACCGA 57.063 47.368 0.00 0.00 46.95 4.69
3917 6643 4.033129 CGGCAAGCCATTTTTGATACAATG 59.967 41.667 12.19 0.00 35.37 2.82
3918 6644 4.081752 TCGGCAAGCCATTTTTGATACAAT 60.082 37.500 12.19 0.00 35.37 2.71
3940 6666 5.528870 ACAACATTTTTCTTCGTTGGGATC 58.471 37.500 0.00 0.00 42.35 3.36
3956 6682 3.407698 TGGATGCAAGTACGACAACATT 58.592 40.909 0.00 0.00 0.00 2.71
3957 6683 3.052455 TGGATGCAAGTACGACAACAT 57.948 42.857 0.00 0.00 0.00 2.71
3958 6684 2.535012 TGGATGCAAGTACGACAACA 57.465 45.000 0.00 0.00 0.00 3.33
3959 6685 2.095853 CCATGGATGCAAGTACGACAAC 59.904 50.000 5.56 0.00 0.00 3.32
3960 6686 2.027653 TCCATGGATGCAAGTACGACAA 60.028 45.455 11.44 0.00 0.00 3.18
3961 6687 1.552792 TCCATGGATGCAAGTACGACA 59.447 47.619 11.44 0.00 0.00 4.35
3962 6688 2.309528 TCCATGGATGCAAGTACGAC 57.690 50.000 11.44 0.00 0.00 4.34
3963 6689 3.342377 TTTCCATGGATGCAAGTACGA 57.658 42.857 17.06 0.00 0.00 3.43
3970 6696 1.750206 CCAACGATTTCCATGGATGCA 59.250 47.619 17.06 3.00 34.82 3.96
3987 6714 5.667539 TCAGACATTTTTGTTGGAACCAA 57.332 34.783 1.83 1.83 0.00 3.67
3996 6723 5.128499 TGTTGGAACCATCAGACATTTTTGT 59.872 36.000 1.06 0.00 0.00 2.83
4011 6738 5.228579 CAACCATTGTTTTTGTTGGAACC 57.771 39.130 0.00 0.00 35.58 3.62
4018 6745 5.799213 TCTTCAACCAACCATTGTTTTTGT 58.201 33.333 2.41 0.00 31.29 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.