Multiple sequence alignment - TraesCS1B01G381800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G381800 chr1B 100.000 2698 0 0 1 2698 614441560 614444257 0.000000e+00 4983.0
1 TraesCS1B01G381800 chr1B 80.769 936 95 50 871 1775 614420145 614421026 0.000000e+00 652.0
2 TraesCS1B01G381800 chr1B 82.148 661 48 40 1160 1769 614425640 614426281 1.110000e-138 503.0
3 TraesCS1B01G381800 chr1B 81.429 630 59 26 524 1120 614422855 614423459 1.890000e-126 462.0
4 TraesCS1B01G381800 chr1B 86.704 361 34 9 1244 1599 614278394 614278745 3.260000e-104 388.0
5 TraesCS1B01G381800 chr1B 85.354 396 34 7 1324 1704 614292581 614292967 3.260000e-104 388.0
6 TraesCS1B01G381800 chr1B 83.077 195 32 1 1150 1344 447564199 447564006 2.760000e-40 176.0
7 TraesCS1B01G381800 chr1B 80.894 246 22 11 1511 1732 614183948 614184192 1.280000e-38 171.0
8 TraesCS1B01G381800 chr1B 95.789 95 4 0 2604 2698 70706135 70706229 1.290000e-33 154.0
9 TraesCS1B01G381800 chr1B 88.060 67 4 2 685 751 614292083 614292145 2.880000e-10 76.8
10 TraesCS1B01G381800 chr1B 100.000 33 0 0 1 33 3555732 3555700 8.070000e-06 62.1
11 TraesCS1B01G381800 chr1D 82.437 1748 144 73 429 2072 448639260 448640948 0.000000e+00 1376.0
12 TraesCS1B01G381800 chr1D 79.901 806 103 42 656 1436 448601540 448602311 1.100000e-148 536.0
13 TraesCS1B01G381800 chr1D 87.273 385 39 7 2235 2610 448641364 448641747 5.340000e-117 431.0
14 TraesCS1B01G381800 chr1D 83.576 481 41 16 1244 1704 448424350 448424812 1.490000e-112 416.0
15 TraesCS1B01G381800 chr1D 85.714 357 39 5 1290 1634 448440344 448440700 1.530000e-97 366.0
16 TraesCS1B01G381800 chr1D 80.082 487 67 15 1264 1728 448283545 448284023 4.300000e-88 335.0
17 TraesCS1B01G381800 chr1D 83.390 295 27 8 1457 1739 448602299 448602583 1.240000e-63 254.0
18 TraesCS1B01G381800 chr1D 91.209 91 4 2 656 746 448423877 448423963 1.310000e-23 121.0
19 TraesCS1B01G381800 chr1A 83.636 1595 119 50 474 1991 544318124 544319653 0.000000e+00 1369.0
20 TraesCS1B01G381800 chr1A 81.436 738 68 34 998 1674 544293055 544293784 8.500000e-150 540.0
21 TraesCS1B01G381800 chr1A 82.429 387 48 11 1264 1634 544177037 544177419 1.210000e-83 320.0
22 TraesCS1B01G381800 chr1A 79.333 450 48 18 1264 1706 544198476 544198887 9.520000e-70 274.0
23 TraesCS1B01G381800 chr1A 90.173 173 7 4 656 819 544292711 544292882 1.630000e-52 217.0
24 TraesCS1B01G381800 chr1A 77.663 291 42 9 1501 1775 544298636 544298919 3.600000e-34 156.0
25 TraesCS1B01G381800 chr1A 94.845 97 3 1 2604 2698 401773529 401773625 1.670000e-32 150.0
26 TraesCS1B01G381800 chr1A 90.722 97 7 2 656 751 544194223 544194318 7.840000e-26 128.0
27 TraesCS1B01G381800 chr7B 83.605 982 89 32 426 1365 658804649 658805600 0.000000e+00 856.0
28 TraesCS1B01G381800 chr7B 93.333 360 19 5 76 430 663342638 663342997 6.620000e-146 527.0
29 TraesCS1B01G381800 chr7B 93.017 358 18 4 76 427 727616209 727615853 1.430000e-142 516.0
30 TraesCS1B01G381800 chr7B 94.898 98 3 1 2601 2698 705656873 705656968 4.650000e-33 152.0
31 TraesCS1B01G381800 chr7B 94.792 96 3 1 2603 2698 295083299 295083206 6.020000e-32 148.0
32 TraesCS1B01G381800 chr2B 94.070 371 18 4 59 426 655702613 655702982 6.520000e-156 560.0
33 TraesCS1B01G381800 chr2B 95.604 91 4 0 2608 2698 662686286 662686196 2.160000e-31 147.0
34 TraesCS1B01G381800 chr2B 100.000 33 0 0 1 33 33938457 33938489 8.070000e-06 62.1
35 TraesCS1B01G381800 chr4A 91.206 398 25 7 39 426 719602518 719602915 1.420000e-147 532.0
36 TraesCS1B01G381800 chr4A 93.484 353 21 2 76 426 719562823 719563175 8.560000e-145 523.0
37 TraesCS1B01G381800 chr4A 91.467 375 25 3 59 426 662723749 662723375 2.400000e-140 508.0
38 TraesCS1B01G381800 chr4A 100.000 33 0 0 1 33 719562484 719562516 8.070000e-06 62.1
39 TraesCS1B01G381800 chr4A 100.000 33 0 0 1 33 719641344 719641376 8.070000e-06 62.1
40 TraesCS1B01G381800 chr3B 93.220 354 21 3 76 426 27080500 27080853 3.980000e-143 518.0
41 TraesCS1B01G381800 chr5B 89.750 400 30 7 39 427 509510036 509509637 4.010000e-138 501.0
42 TraesCS1B01G381800 chr5B 90.231 389 30 8 42 427 666454991 666454608 4.010000e-138 501.0
43 TraesCS1B01G381800 chr5B 95.789 95 4 0 2604 2698 640272735 640272829 1.290000e-33 154.0
44 TraesCS1B01G381800 chr5B 100.000 33 0 0 1 33 316258129 316258161 8.070000e-06 62.1
45 TraesCS1B01G381800 chr5B 100.000 33 0 0 1 33 429798412 429798444 8.070000e-06 62.1
46 TraesCS1B01G381800 chr5B 100.000 33 0 0 1 33 525820229 525820197 8.070000e-06 62.1
47 TraesCS1B01G381800 chr5B 100.000 33 0 0 1 33 636752172 636752204 8.070000e-06 62.1
48 TraesCS1B01G381800 chr5B 100.000 33 0 0 1 33 694511972 694512004 8.070000e-06 62.1
49 TraesCS1B01G381800 chr4B 95.699 93 4 0 2606 2698 67856624 67856716 1.670000e-32 150.0
50 TraesCS1B01G381800 chr2A 94.845 97 4 1 2603 2698 74829052 74829148 1.670000e-32 150.0
51 TraesCS1B01G381800 chr2A 90.654 107 8 2 2593 2698 344135984 344135879 1.010000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G381800 chr1B 614441560 614444257 2697 False 4983.00 4983 100.000000 1 2698 1 chr1B.!!$F4 2697
1 TraesCS1B01G381800 chr1B 614420145 614426281 6136 False 539.00 652 81.448667 524 1775 3 chr1B.!!$F6 1251
2 TraesCS1B01G381800 chr1B 614292083 614292967 884 False 232.40 388 86.707000 685 1704 2 chr1B.!!$F5 1019
3 TraesCS1B01G381800 chr1D 448639260 448641747 2487 False 903.50 1376 84.855000 429 2610 2 chr1D.!!$F5 2181
4 TraesCS1B01G381800 chr1D 448601540 448602583 1043 False 395.00 536 81.645500 656 1739 2 chr1D.!!$F4 1083
5 TraesCS1B01G381800 chr1D 448423877 448424812 935 False 268.50 416 87.392500 656 1704 2 chr1D.!!$F3 1048
6 TraesCS1B01G381800 chr1A 544318124 544319653 1529 False 1369.00 1369 83.636000 474 1991 1 chr1A.!!$F6 1517
7 TraesCS1B01G381800 chr1A 544292711 544293784 1073 False 378.50 540 85.804500 656 1674 2 chr1A.!!$F7 1018
8 TraesCS1B01G381800 chr7B 658804649 658805600 951 False 856.00 856 83.605000 426 1365 1 chr7B.!!$F1 939
9 TraesCS1B01G381800 chr4A 719562484 719563175 691 False 292.55 523 96.742000 1 426 2 chr4A.!!$F3 425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 3198 0.102844 TTGAGCAACAGCCAAAGTGC 59.897 50.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 6496 0.031314 CATCTCCCGTCAGACATCCG 59.969 60.0 0.41 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.470098 GTGGTGATTTGATAGCGGTAATGAT 59.530 40.000 0.00 0.00 0.00 2.45
34 35 6.649141 GTGGTGATTTGATAGCGGTAATGATA 59.351 38.462 0.00 0.00 0.00 2.15
35 36 6.873605 TGGTGATTTGATAGCGGTAATGATAG 59.126 38.462 0.00 0.00 0.00 2.08
36 37 6.183360 GGTGATTTGATAGCGGTAATGATAGC 60.183 42.308 0.00 0.00 0.00 2.97
234 502 4.716794 ACCAAACATTTAGTACCGGTTGA 58.283 39.130 15.04 0.00 0.00 3.18
270 538 2.109517 TAAAACCCTACGCGCACCCA 62.110 55.000 5.73 0.00 0.00 4.51
274 542 4.388499 CCTACGCGCACCCAGGTT 62.388 66.667 5.73 0.00 0.00 3.50
281 549 3.365265 GCACCCAGGTTTGGCTCG 61.365 66.667 0.00 0.00 43.58 5.03
294 562 2.964925 GCTCGTGCCACGTGTTCA 60.965 61.111 17.83 9.20 43.14 3.18
334 602 1.818674 GACGAACCGGTACTAAAGGGA 59.181 52.381 8.00 0.00 0.00 4.20
339 607 1.360507 ACCGGTACTAAAGGGAGGACT 59.639 52.381 4.49 0.00 30.24 3.85
399 667 0.600557 TAAAGGCCGTTACGAACCGA 59.399 50.000 6.24 0.00 0.00 4.69
426 694 1.004918 GCCGGTTCTGCACTAGTGT 60.005 57.895 23.44 0.00 0.00 3.55
427 695 0.602905 GCCGGTTCTGCACTAGTGTT 60.603 55.000 23.44 0.00 0.00 3.32
428 696 1.148310 CCGGTTCTGCACTAGTGTTG 58.852 55.000 23.44 15.96 0.00 3.33
429 697 1.540363 CCGGTTCTGCACTAGTGTTGT 60.540 52.381 23.44 0.00 0.00 3.32
430 698 2.288579 CCGGTTCTGCACTAGTGTTGTA 60.289 50.000 23.44 8.32 0.00 2.41
431 699 2.729882 CGGTTCTGCACTAGTGTTGTAC 59.270 50.000 23.44 17.78 0.00 2.90
432 700 3.724374 GGTTCTGCACTAGTGTTGTACA 58.276 45.455 23.44 11.67 0.00 2.90
433 701 3.741344 GGTTCTGCACTAGTGTTGTACAG 59.259 47.826 23.44 19.69 0.00 2.74
434 702 4.369182 GTTCTGCACTAGTGTTGTACAGT 58.631 43.478 23.44 0.00 35.61 3.55
435 703 5.508489 GGTTCTGCACTAGTGTTGTACAGTA 60.508 44.000 23.44 12.44 33.15 2.74
436 704 5.777850 TCTGCACTAGTGTTGTACAGTAA 57.222 39.130 23.44 5.03 33.97 2.24
437 705 6.340962 TCTGCACTAGTGTTGTACAGTAAT 57.659 37.500 23.44 0.00 33.97 1.89
439 707 5.475719 TGCACTAGTGTTGTACAGTAATCC 58.524 41.667 23.44 2.90 33.97 3.01
440 708 4.561606 GCACTAGTGTTGTACAGTAATCCG 59.438 45.833 23.44 0.00 33.97 4.18
441 709 4.561606 CACTAGTGTTGTACAGTAATCCGC 59.438 45.833 15.06 0.00 33.97 5.54
442 710 2.968675 AGTGTTGTACAGTAATCCGCC 58.031 47.619 0.00 0.00 28.20 6.13
443 711 2.300723 AGTGTTGTACAGTAATCCGCCA 59.699 45.455 0.00 0.00 28.20 5.69
444 712 2.414138 GTGTTGTACAGTAATCCGCCAC 59.586 50.000 0.00 0.00 0.00 5.01
445 713 2.004733 GTTGTACAGTAATCCGCCACC 58.995 52.381 0.00 0.00 0.00 4.61
446 714 0.538118 TGTACAGTAATCCGCCACCC 59.462 55.000 0.00 0.00 0.00 4.61
447 715 0.538118 GTACAGTAATCCGCCACCCA 59.462 55.000 0.00 0.00 0.00 4.51
450 718 2.270850 GTAATCCGCCACCCAGCA 59.729 61.111 0.00 0.00 0.00 4.41
451 719 2.112815 GTAATCCGCCACCCAGCAC 61.113 63.158 0.00 0.00 0.00 4.40
452 720 2.297895 TAATCCGCCACCCAGCACT 61.298 57.895 0.00 0.00 0.00 4.40
453 721 2.252072 TAATCCGCCACCCAGCACTC 62.252 60.000 0.00 0.00 0.00 3.51
465 733 2.581354 GCACTCGCTCCTCCATGT 59.419 61.111 0.00 0.00 34.30 3.21
466 734 1.520342 GCACTCGCTCCTCCATGTC 60.520 63.158 0.00 0.00 34.30 3.06
467 735 1.954362 GCACTCGCTCCTCCATGTCT 61.954 60.000 0.00 0.00 34.30 3.41
468 736 1.393603 CACTCGCTCCTCCATGTCTA 58.606 55.000 0.00 0.00 0.00 2.59
470 738 2.363680 CACTCGCTCCTCCATGTCTAAT 59.636 50.000 0.00 0.00 0.00 1.73
471 739 3.034635 ACTCGCTCCTCCATGTCTAATT 58.965 45.455 0.00 0.00 0.00 1.40
473 741 2.034685 TCGCTCCTCCATGTCTAATTCG 59.965 50.000 0.00 0.00 0.00 3.34
474 742 2.223829 CGCTCCTCCATGTCTAATTCGT 60.224 50.000 0.00 0.00 0.00 3.85
475 743 3.004419 CGCTCCTCCATGTCTAATTCGTA 59.996 47.826 0.00 0.00 0.00 3.43
477 745 4.278669 GCTCCTCCATGTCTAATTCGTAGA 59.721 45.833 0.00 0.00 36.43 2.59
479 747 6.683110 GCTCCTCCATGTCTAATTCGTAGAAA 60.683 42.308 0.00 0.00 45.90 2.52
480 748 7.177832 TCCTCCATGTCTAATTCGTAGAAAA 57.822 36.000 0.00 0.00 45.90 2.29
481 749 7.617225 TCCTCCATGTCTAATTCGTAGAAAAA 58.383 34.615 0.00 0.00 45.90 1.94
482 750 8.265055 TCCTCCATGTCTAATTCGTAGAAAAAT 58.735 33.333 0.00 0.00 45.90 1.82
483 751 8.338259 CCTCCATGTCTAATTCGTAGAAAAATG 58.662 37.037 0.00 0.00 45.90 2.32
484 752 9.098355 CTCCATGTCTAATTCGTAGAAAAATGA 57.902 33.333 0.00 0.00 45.90 2.57
486 754 7.852945 CCATGTCTAATTCGTAGAAAAATGAGC 59.147 37.037 0.00 0.00 45.90 4.26
487 755 7.899178 TGTCTAATTCGTAGAAAAATGAGCA 57.101 32.000 0.00 0.00 45.90 4.26
488 756 8.492673 TGTCTAATTCGTAGAAAAATGAGCAT 57.507 30.769 0.00 0.00 45.90 3.79
489 757 9.594478 TGTCTAATTCGTAGAAAAATGAGCATA 57.406 29.630 0.00 0.00 45.90 3.14
491 759 9.817809 TCTAATTCGTAGAAAAATGAGCATAGT 57.182 29.630 0.00 0.00 45.90 2.12
495 763 8.942338 TTCGTAGAAAAATGAGCATAGTATGT 57.058 30.769 11.73 0.00 45.90 2.29
496 764 8.942338 TCGTAGAAAAATGAGCATAGTATGTT 57.058 30.769 11.73 5.57 0.00 2.71
497 765 9.031360 TCGTAGAAAAATGAGCATAGTATGTTC 57.969 33.333 17.48 17.48 40.42 3.18
499 767 7.251704 AGAAAAATGAGCATAGTATGTTCCG 57.748 36.000 20.41 0.00 39.43 4.30
500 768 6.260936 AGAAAAATGAGCATAGTATGTTCCGG 59.739 38.462 20.41 0.00 39.43 5.14
501 769 4.689612 AATGAGCATAGTATGTTCCGGT 57.310 40.909 20.41 7.42 39.43 5.28
502 770 3.452755 TGAGCATAGTATGTTCCGGTG 57.547 47.619 20.41 0.00 39.43 4.94
505 773 1.878953 CATAGTATGTTCCGGTGCCC 58.121 55.000 0.00 0.00 0.00 5.36
506 774 0.763035 ATAGTATGTTCCGGTGCCCC 59.237 55.000 0.00 0.00 0.00 5.80
508 776 2.285818 TATGTTCCGGTGCCCCCT 60.286 61.111 0.00 0.00 0.00 4.79
510 778 2.833151 TATGTTCCGGTGCCCCCTCT 62.833 60.000 0.00 0.00 0.00 3.69
511 779 3.647771 GTTCCGGTGCCCCCTCTT 61.648 66.667 0.00 0.00 0.00 2.85
513 781 3.864983 TTCCGGTGCCCCCTCTTCT 62.865 63.158 0.00 0.00 0.00 2.85
514 782 2.365105 CCGGTGCCCCCTCTTCTA 60.365 66.667 0.00 0.00 0.00 2.10
515 783 2.732619 CCGGTGCCCCCTCTTCTAC 61.733 68.421 0.00 0.00 0.00 2.59
517 785 1.988406 GGTGCCCCCTCTTCTACGT 60.988 63.158 0.00 0.00 0.00 3.57
518 786 1.516423 GTGCCCCCTCTTCTACGTC 59.484 63.158 0.00 0.00 0.00 4.34
519 787 1.077805 TGCCCCCTCTTCTACGTCA 59.922 57.895 0.00 0.00 0.00 4.35
520 788 0.325296 TGCCCCCTCTTCTACGTCAT 60.325 55.000 0.00 0.00 0.00 3.06
521 789 0.389757 GCCCCCTCTTCTACGTCATC 59.610 60.000 0.00 0.00 0.00 2.92
522 790 1.776662 CCCCCTCTTCTACGTCATCA 58.223 55.000 0.00 0.00 0.00 3.07
523 791 2.320781 CCCCCTCTTCTACGTCATCAT 58.679 52.381 0.00 0.00 0.00 2.45
524 792 3.497332 CCCCCTCTTCTACGTCATCATA 58.503 50.000 0.00 0.00 0.00 2.15
525 793 3.895656 CCCCCTCTTCTACGTCATCATAA 59.104 47.826 0.00 0.00 0.00 1.90
526 794 4.528596 CCCCCTCTTCTACGTCATCATAAT 59.471 45.833 0.00 0.00 0.00 1.28
561 2757 2.152016 GCTTTCCACTTGTGGTAGTCC 58.848 52.381 18.05 2.99 0.00 3.85
566 2762 1.072331 CCACTTGTGGTAGTCCAAGCT 59.928 52.381 11.39 0.00 46.15 3.74
623 2823 3.320541 AGAACTCGGGAATAGAGATGCAG 59.679 47.826 0.00 0.00 38.97 4.41
636 2836 3.320879 ATGCAGTGAGGCTGGGACG 62.321 63.158 0.00 0.00 45.14 4.79
704 2944 2.101053 CATGTGCTGCATCGAATCAC 57.899 50.000 5.27 0.00 35.19 3.06
705 2945 1.399089 CATGTGCTGCATCGAATCACA 59.601 47.619 5.27 9.72 41.18 3.58
706 2946 1.741528 TGTGCTGCATCGAATCACAT 58.258 45.000 5.27 0.00 33.33 3.21
756 2998 0.239347 CTTCACGAAGGTACGGACGT 59.761 55.000 1.98 1.98 39.53 4.34
839 3112 3.927142 CCGTAGCTGCAGCCTATATAAAC 59.073 47.826 34.39 17.34 43.38 2.01
910 3198 0.102844 TTGAGCAACAGCCAAAGTGC 59.897 50.000 0.00 0.00 0.00 4.40
947 3260 0.721718 GTTTTCCGACTGCTGATCCG 59.278 55.000 0.00 0.00 0.00 4.18
1137 3513 0.179258 GAAACGTTGTGATCGTCCGC 60.179 55.000 0.00 0.00 40.69 5.54
1445 6031 2.125350 CAGAAGGCTGCCGAGACC 60.125 66.667 13.96 2.02 34.95 3.85
1446 6032 3.764466 AGAAGGCTGCCGAGACCG 61.764 66.667 13.96 0.00 0.00 4.79
1520 6139 3.190323 ATACGACGCGGCGCAGTAT 62.190 57.895 37.74 29.30 31.66 2.12
1678 6318 1.293498 CCAAGGACACCACCGAGAG 59.707 63.158 0.00 0.00 34.73 3.20
1706 6351 1.350351 AGGGATCACTAGATGCATGCC 59.650 52.381 16.68 0.00 43.67 4.40
1707 6352 1.072806 GGGATCACTAGATGCATGCCA 59.927 52.381 16.68 3.52 43.67 4.92
1739 6384 3.982576 TTTGCTTTCGTTTCCTTCTCC 57.017 42.857 0.00 0.00 0.00 3.71
1769 6418 5.629020 CACATTTTACGTTCCAGTTTCATGG 59.371 40.000 0.00 0.00 42.11 3.66
1779 6428 1.196808 CAGTTTCATGGTTTCCGGACG 59.803 52.381 1.83 0.00 0.00 4.79
1780 6429 0.109919 GTTTCATGGTTTCCGGACGC 60.110 55.000 1.83 0.00 0.00 5.19
1781 6430 1.570347 TTTCATGGTTTCCGGACGCG 61.570 55.000 1.83 3.53 0.00 6.01
1782 6431 3.496131 CATGGTTTCCGGACGCGG 61.496 66.667 12.47 0.00 0.00 6.46
1783 6432 3.697747 ATGGTTTCCGGACGCGGA 61.698 61.111 12.47 0.00 36.09 5.54
1784 6433 3.945304 ATGGTTTCCGGACGCGGAC 62.945 63.158 12.47 3.69 37.84 4.79
1825 6475 1.208052 TCCTTATGCTGCTCAGTGTCC 59.792 52.381 0.00 0.00 0.00 4.02
1832 6492 1.459348 TGCTCAGTGTCCTGGGTCA 60.459 57.895 0.00 0.00 41.59 4.02
1836 6496 1.546476 CTCAGTGTCCTGGGTCAGTAC 59.454 57.143 0.00 0.00 39.31 2.73
1885 6545 4.566759 TGTGTTCGTCAGACTTCTCTTTTG 59.433 41.667 0.00 0.00 0.00 2.44
1886 6546 4.567159 GTGTTCGTCAGACTTCTCTTTTGT 59.433 41.667 0.00 0.00 0.00 2.83
1888 6548 6.255020 GTGTTCGTCAGACTTCTCTTTTGTAA 59.745 38.462 0.00 0.00 0.00 2.41
1890 6550 8.139350 TGTTCGTCAGACTTCTCTTTTGTAATA 58.861 33.333 0.00 0.00 0.00 0.98
1891 6551 8.975439 GTTCGTCAGACTTCTCTTTTGTAATAA 58.025 33.333 0.00 0.00 0.00 1.40
1931 6620 0.106708 TGAACTGGGTGAGCAGACAC 59.893 55.000 0.00 0.00 39.70 3.67
1946 6635 3.249091 CAGACACGTCTCATCCAAGAAG 58.751 50.000 0.00 0.00 37.98 2.85
2048 6738 2.083774 TGACGGCAGGAATGAATTCAC 58.916 47.619 11.07 0.00 38.53 3.18
2072 6762 6.538742 ACCGTCTTCAGATTTACCAACATATG 59.461 38.462 0.00 0.00 0.00 1.78
2073 6763 6.761242 CCGTCTTCAGATTTACCAACATATGA 59.239 38.462 10.38 0.00 0.00 2.15
2075 6765 8.116753 CGTCTTCAGATTTACCAACATATGAAC 58.883 37.037 10.38 0.00 0.00 3.18
2081 7069 9.357652 CAGATTTACCAACATATGAACTTTTGG 57.642 33.333 16.56 16.56 42.15 3.28
2088 7076 3.763897 ACATATGAACTTTTGGTGGAGCC 59.236 43.478 10.38 0.00 37.90 4.70
2089 7077 1.632589 ATGAACTTTTGGTGGAGCCC 58.367 50.000 0.00 0.00 36.04 5.19
2090 7078 0.821711 TGAACTTTTGGTGGAGCCCG 60.822 55.000 0.00 0.00 36.04 6.13
2097 7085 2.358737 GGTGGAGCCCGACACTTG 60.359 66.667 0.00 0.00 37.72 3.16
2119 7109 1.818674 GGCAATTCCTTTCGTCCATGT 59.181 47.619 0.00 0.00 0.00 3.21
2124 7114 5.563867 GCAATTCCTTTCGTCCATGTACAAA 60.564 40.000 0.00 0.00 0.00 2.83
2125 7115 5.880054 ATTCCTTTCGTCCATGTACAAAG 57.120 39.130 0.00 0.00 0.00 2.77
2127 7117 4.963373 TCCTTTCGTCCATGTACAAAGAA 58.037 39.130 0.00 0.00 0.00 2.52
2128 7118 4.753107 TCCTTTCGTCCATGTACAAAGAAC 59.247 41.667 0.00 0.00 0.00 3.01
2129 7119 4.513692 CCTTTCGTCCATGTACAAAGAACA 59.486 41.667 0.00 0.00 0.00 3.18
2130 7120 5.181245 CCTTTCGTCCATGTACAAAGAACAT 59.819 40.000 0.00 0.00 38.08 2.71
2131 7121 6.293955 CCTTTCGTCCATGTACAAAGAACATT 60.294 38.462 0.00 0.00 35.39 2.71
2135 7125 6.092122 TCGTCCATGTACAAAGAACATTCATC 59.908 38.462 0.00 0.00 35.39 2.92
2147 7137 6.471233 AGAACATTCATCGTCCTTCATCTA 57.529 37.500 0.00 0.00 0.00 1.98
2148 7138 6.276847 AGAACATTCATCGTCCTTCATCTAC 58.723 40.000 0.00 0.00 0.00 2.59
2149 7139 5.860941 ACATTCATCGTCCTTCATCTACT 57.139 39.130 0.00 0.00 0.00 2.57
2150 7140 5.837437 ACATTCATCGTCCTTCATCTACTC 58.163 41.667 0.00 0.00 0.00 2.59
2151 7141 4.920640 TTCATCGTCCTTCATCTACTCC 57.079 45.455 0.00 0.00 0.00 3.85
2152 7142 3.223435 TCATCGTCCTTCATCTACTCCC 58.777 50.000 0.00 0.00 0.00 4.30
2153 7143 3.117474 TCATCGTCCTTCATCTACTCCCT 60.117 47.826 0.00 0.00 0.00 4.20
2154 7144 2.933573 TCGTCCTTCATCTACTCCCTC 58.066 52.381 0.00 0.00 0.00 4.30
2155 7145 1.957877 CGTCCTTCATCTACTCCCTCC 59.042 57.143 0.00 0.00 0.00 4.30
2156 7146 1.957877 GTCCTTCATCTACTCCCTCCG 59.042 57.143 0.00 0.00 0.00 4.63
2157 7147 1.569548 TCCTTCATCTACTCCCTCCGT 59.430 52.381 0.00 0.00 0.00 4.69
2158 7148 1.683917 CCTTCATCTACTCCCTCCGTG 59.316 57.143 0.00 0.00 0.00 4.94
2159 7149 2.656002 CTTCATCTACTCCCTCCGTGA 58.344 52.381 0.00 0.00 0.00 4.35
2160 7150 2.820728 TCATCTACTCCCTCCGTGAA 57.179 50.000 0.00 0.00 0.00 3.18
2161 7151 2.376109 TCATCTACTCCCTCCGTGAAC 58.624 52.381 0.00 0.00 0.00 3.18
2162 7152 1.065701 CATCTACTCCCTCCGTGAACG 59.934 57.143 0.00 0.00 39.44 3.95
2163 7153 0.037303 TCTACTCCCTCCGTGAACGT 59.963 55.000 1.75 0.00 37.74 3.99
2164 7154 0.886563 CTACTCCCTCCGTGAACGTT 59.113 55.000 0.00 0.00 37.74 3.99
2165 7155 1.271656 CTACTCCCTCCGTGAACGTTT 59.728 52.381 0.46 0.00 37.74 3.60
2166 7156 0.466963 ACTCCCTCCGTGAACGTTTT 59.533 50.000 0.46 0.00 37.74 2.43
2167 7157 1.134310 ACTCCCTCCGTGAACGTTTTT 60.134 47.619 0.46 0.00 37.74 1.94
2168 7158 1.263217 CTCCCTCCGTGAACGTTTTTG 59.737 52.381 0.46 0.00 37.74 2.44
2169 7159 1.134461 TCCCTCCGTGAACGTTTTTGA 60.134 47.619 0.46 0.00 37.74 2.69
2170 7160 1.003223 CCCTCCGTGAACGTTTTTGAC 60.003 52.381 0.46 0.00 37.74 3.18
2171 7161 1.666700 CCTCCGTGAACGTTTTTGACA 59.333 47.619 0.46 0.00 37.74 3.58
2172 7162 2.538132 CCTCCGTGAACGTTTTTGACAC 60.538 50.000 0.46 4.55 37.74 3.67
2173 7163 2.348660 TCCGTGAACGTTTTTGACACT 58.651 42.857 0.46 0.00 37.74 3.55
2174 7164 2.743126 TCCGTGAACGTTTTTGACACTT 59.257 40.909 0.46 0.00 37.74 3.16
2175 7165 3.095738 CCGTGAACGTTTTTGACACTTC 58.904 45.455 0.46 0.00 37.74 3.01
2176 7166 3.181514 CCGTGAACGTTTTTGACACTTCT 60.182 43.478 0.46 0.00 37.74 2.85
2177 7167 4.399978 CGTGAACGTTTTTGACACTTCTT 58.600 39.130 0.46 0.00 34.11 2.52
2178 7168 5.446206 CCGTGAACGTTTTTGACACTTCTTA 60.446 40.000 0.46 0.00 37.74 2.10
2179 7169 6.016718 CGTGAACGTTTTTGACACTTCTTAA 58.983 36.000 0.46 0.00 34.11 1.85
2180 7170 6.520447 CGTGAACGTTTTTGACACTTCTTAAA 59.480 34.615 0.46 0.00 34.11 1.52
2181 7171 7.217447 CGTGAACGTTTTTGACACTTCTTAAAT 59.783 33.333 0.46 0.00 34.11 1.40
2182 7172 8.856247 GTGAACGTTTTTGACACTTCTTAAATT 58.144 29.630 0.46 0.00 0.00 1.82
2220 7210 5.884792 CAGAGGGAGTATTTTTCAAGCAGAT 59.115 40.000 0.00 0.00 0.00 2.90
2238 7245 9.935241 CAAGCAGATTTATATGGTCTACTATGT 57.065 33.333 0.00 0.00 0.00 2.29
2297 7304 3.990318 GCTGATAGCCATTAAACCACC 57.010 47.619 0.00 0.00 34.48 4.61
2305 7312 5.659440 AGCCATTAAACCACCACTATTTG 57.341 39.130 0.00 0.00 0.00 2.32
2315 7322 6.388619 ACCACCACTATTTGACTTCCTAAT 57.611 37.500 0.00 0.00 0.00 1.73
2389 7400 4.130118 CACAATAGGAAGTGCCCTATCAC 58.870 47.826 0.00 0.00 46.06 3.06
2445 7456 8.892723 TCATAAATAAAAGTCCACTGCACATAG 58.107 33.333 0.00 0.00 0.00 2.23
2448 7459 6.743575 ATAAAAGTCCACTGCACATAGTTC 57.256 37.500 0.00 0.00 0.00 3.01
2453 7464 5.994250 AGTCCACTGCACATAGTTCATAAT 58.006 37.500 0.00 0.00 0.00 1.28
2463 7474 9.619316 TGCACATAGTTCATAATTTGTTTACAC 57.381 29.630 0.00 0.00 0.00 2.90
2464 7475 8.785101 GCACATAGTTCATAATTTGTTTACACG 58.215 33.333 0.00 0.00 0.00 4.49
2466 7477 7.690637 ACATAGTTCATAATTTGTTTACACGCG 59.309 33.333 3.53 3.53 0.00 6.01
2467 7478 5.992729 AGTTCATAATTTGTTTACACGCGT 58.007 33.333 5.58 5.58 0.00 6.01
2475 7486 4.765281 TTGTTTACACGCGTATATGCTC 57.235 40.909 13.44 0.03 0.00 4.26
2557 7589 8.981724 ATCACAGAAATTTCATTTGATGACTG 57.018 30.769 19.99 7.87 39.39 3.51
2558 7590 7.944061 TCACAGAAATTTCATTTGATGACTGT 58.056 30.769 19.99 8.46 40.23 3.55
2559 7591 8.003508 CACAGAAATTTCATTTGATGACTGTG 57.996 34.615 19.99 15.62 44.94 3.66
2560 7592 7.944061 ACAGAAATTTCATTTGATGACTGTGA 58.056 30.769 19.99 0.00 39.01 3.58
2561 7593 8.582437 ACAGAAATTTCATTTGATGACTGTGAT 58.418 29.630 19.99 0.00 39.01 3.06
2588 7620 8.777578 ATATATACACTTCTCCACAGGTACAA 57.222 34.615 0.00 0.00 0.00 2.41
2589 7621 7.676683 ATATACACTTCTCCACAGGTACAAT 57.323 36.000 0.00 0.00 0.00 2.71
2602 7634 3.633525 CAGGTACAATGCCAATGCTGTAT 59.366 43.478 0.00 0.00 38.71 2.29
2603 7635 4.821260 CAGGTACAATGCCAATGCTGTATA 59.179 41.667 0.00 0.00 38.71 1.47
2604 7636 5.299028 CAGGTACAATGCCAATGCTGTATAA 59.701 40.000 0.00 0.00 38.71 0.98
2607 7639 7.890127 AGGTACAATGCCAATGCTGTATAATAT 59.110 33.333 0.00 0.00 38.71 1.28
2608 7640 9.173021 GGTACAATGCCAATGCTGTATAATATA 57.827 33.333 0.00 0.00 38.71 0.86
2611 7643 8.192774 ACAATGCCAATGCTGTATAATATATGC 58.807 33.333 0.00 2.72 38.71 3.14
2613 7645 7.558161 TGCCAATGCTGTATAATATATGCTC 57.442 36.000 8.73 0.00 38.71 4.26
2614 7646 6.543465 TGCCAATGCTGTATAATATATGCTCC 59.457 38.462 8.73 0.00 38.71 4.70
2615 7647 6.016777 GCCAATGCTGTATAATATATGCTCCC 60.017 42.308 8.73 0.00 33.53 4.30
2616 7648 7.285566 CCAATGCTGTATAATATATGCTCCCT 58.714 38.462 8.73 0.00 0.00 4.20
2617 7649 7.443575 CCAATGCTGTATAATATATGCTCCCTC 59.556 40.741 8.73 0.00 0.00 4.30
2618 7650 6.485830 TGCTGTATAATATATGCTCCCTCC 57.514 41.667 8.73 0.00 0.00 4.30
2619 7651 5.069119 TGCTGTATAATATATGCTCCCTCCG 59.931 44.000 8.73 0.00 0.00 4.63
2620 7652 5.069251 GCTGTATAATATATGCTCCCTCCGT 59.931 44.000 0.00 0.00 0.00 4.69
2621 7653 6.710597 TGTATAATATATGCTCCCTCCGTC 57.289 41.667 0.00 0.00 0.00 4.79
2622 7654 6.432581 TGTATAATATATGCTCCCTCCGTCT 58.567 40.000 0.00 0.00 0.00 4.18
2623 7655 6.546403 TGTATAATATATGCTCCCTCCGTCTC 59.454 42.308 0.00 0.00 0.00 3.36
2624 7656 2.971901 TATATGCTCCCTCCGTCTCA 57.028 50.000 0.00 0.00 0.00 3.27
2625 7657 2.088104 ATATGCTCCCTCCGTCTCAA 57.912 50.000 0.00 0.00 0.00 3.02
2626 7658 1.860641 TATGCTCCCTCCGTCTCAAA 58.139 50.000 0.00 0.00 0.00 2.69
2627 7659 0.984230 ATGCTCCCTCCGTCTCAAAA 59.016 50.000 0.00 0.00 0.00 2.44
2628 7660 0.984230 TGCTCCCTCCGTCTCAAAAT 59.016 50.000 0.00 0.00 0.00 1.82
2629 7661 1.351017 TGCTCCCTCCGTCTCAAAATT 59.649 47.619 0.00 0.00 0.00 1.82
2630 7662 2.010497 GCTCCCTCCGTCTCAAAATTC 58.990 52.381 0.00 0.00 0.00 2.17
2631 7663 2.355209 GCTCCCTCCGTCTCAAAATTCT 60.355 50.000 0.00 0.00 0.00 2.40
2632 7664 3.870299 GCTCCCTCCGTCTCAAAATTCTT 60.870 47.826 0.00 0.00 0.00 2.52
2633 7665 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
2634 7666 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
2635 7667 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
2636 7668 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
2637 7669 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
2638 7670 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
2639 7671 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
2640 7672 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
2641 7673 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
2642 7674 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
2643 7675 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
2644 7676 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
2647 7679 9.617975 CTCAAAATTCTTGTCTTAGATTTGTCC 57.382 33.333 3.27 0.00 31.10 4.02
2648 7680 9.130661 TCAAAATTCTTGTCTTAGATTTGTCCA 57.869 29.630 3.27 0.00 31.10 4.02
2649 7681 9.748708 CAAAATTCTTGTCTTAGATTTGTCCAA 57.251 29.630 0.00 0.00 0.00 3.53
2654 7686 8.251750 TCTTGTCTTAGATTTGTCCAAATACG 57.748 34.615 5.29 0.00 40.77 3.06
2655 7687 6.978343 TGTCTTAGATTTGTCCAAATACGG 57.022 37.500 5.29 0.00 40.77 4.02
2656 7688 6.703319 TGTCTTAGATTTGTCCAAATACGGA 58.297 36.000 5.29 0.82 40.77 4.69
2657 7689 7.335627 TGTCTTAGATTTGTCCAAATACGGAT 58.664 34.615 5.29 0.00 40.77 4.18
2658 7690 7.279981 TGTCTTAGATTTGTCCAAATACGGATG 59.720 37.037 5.29 0.00 40.77 3.51
2659 7691 7.280205 GTCTTAGATTTGTCCAAATACGGATGT 59.720 37.037 5.29 0.00 40.77 3.06
2660 7692 8.479689 TCTTAGATTTGTCCAAATACGGATGTA 58.520 33.333 5.29 0.00 40.77 2.29
2661 7693 9.273016 CTTAGATTTGTCCAAATACGGATGTAT 57.727 33.333 5.29 0.00 43.14 2.29
2662 7694 7.730364 AGATTTGTCCAAATACGGATGTATC 57.270 36.000 5.29 0.00 40.42 2.24
2663 7695 7.279615 AGATTTGTCCAAATACGGATGTATCA 58.720 34.615 5.29 0.00 40.42 2.15
2664 7696 7.773224 AGATTTGTCCAAATACGGATGTATCAA 59.227 33.333 5.29 0.00 40.42 2.57
2665 7697 6.918892 TTGTCCAAATACGGATGTATCAAG 57.081 37.500 0.00 0.00 40.42 3.02
2666 7698 5.984725 TGTCCAAATACGGATGTATCAAGT 58.015 37.500 0.00 0.00 40.42 3.16
2667 7699 6.046593 TGTCCAAATACGGATGTATCAAGTC 58.953 40.000 0.00 0.00 40.42 3.01
2668 7700 6.046593 GTCCAAATACGGATGTATCAAGTCA 58.953 40.000 0.00 0.00 40.42 3.41
2669 7701 6.018994 GTCCAAATACGGATGTATCAAGTCAC 60.019 42.308 0.00 0.00 40.42 3.67
2670 7702 5.051039 CCAAATACGGATGTATCAAGTCACG 60.051 44.000 0.00 0.00 40.42 4.35
2671 7703 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
2672 7704 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
2673 7705 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
2674 7706 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
2675 7707 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
2676 7708 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
2677 7709 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
2678 7710 6.453791 CGGATGTATCAAGTCACGTTTTAGTG 60.454 42.308 0.00 0.00 43.11 2.74
2679 7711 6.367969 GGATGTATCAAGTCACGTTTTAGTGT 59.632 38.462 0.00 0.00 42.40 3.55
2680 7712 7.095355 GGATGTATCAAGTCACGTTTTAGTGTT 60.095 37.037 0.00 0.00 42.40 3.32
2681 7713 8.821147 ATGTATCAAGTCACGTTTTAGTGTTA 57.179 30.769 0.00 0.00 42.40 2.41
2682 7714 8.289440 TGTATCAAGTCACGTTTTAGTGTTAG 57.711 34.615 0.00 0.00 42.40 2.34
2683 7715 6.780706 ATCAAGTCACGTTTTAGTGTTAGG 57.219 37.500 0.00 0.00 42.40 2.69
2684 7716 5.663456 TCAAGTCACGTTTTAGTGTTAGGT 58.337 37.500 0.00 0.00 42.40 3.08
2685 7717 6.804677 TCAAGTCACGTTTTAGTGTTAGGTA 58.195 36.000 0.00 0.00 42.40 3.08
2686 7718 6.697019 TCAAGTCACGTTTTAGTGTTAGGTAC 59.303 38.462 0.00 0.00 42.40 3.34
2687 7719 6.147864 AGTCACGTTTTAGTGTTAGGTACA 57.852 37.500 0.00 0.00 42.40 2.90
2688 7720 6.752168 AGTCACGTTTTAGTGTTAGGTACAT 58.248 36.000 0.00 0.00 42.40 2.29
2689 7721 6.865205 AGTCACGTTTTAGTGTTAGGTACATC 59.135 38.462 0.00 0.00 42.40 3.06
2690 7722 6.089954 GTCACGTTTTAGTGTTAGGTACATCC 59.910 42.308 0.00 0.00 42.40 3.51
2691 7723 5.061311 CACGTTTTAGTGTTAGGTACATCCG 59.939 44.000 0.00 0.00 39.39 4.18
2692 7724 5.163513 CGTTTTAGTGTTAGGTACATCCGT 58.836 41.667 0.00 0.00 39.39 4.69
2693 7725 6.072175 ACGTTTTAGTGTTAGGTACATCCGTA 60.072 38.462 0.00 0.00 39.39 4.02
2694 7726 6.974622 CGTTTTAGTGTTAGGTACATCCGTAT 59.025 38.462 0.00 0.00 39.39 3.06
2695 7727 7.166473 CGTTTTAGTGTTAGGTACATCCGTATC 59.834 40.741 0.00 0.00 39.39 2.24
2696 7728 7.886629 TTTAGTGTTAGGTACATCCGTATCT 57.113 36.000 0.00 0.00 41.99 1.98
2697 7729 8.978874 TTTAGTGTTAGGTACATCCGTATCTA 57.021 34.615 0.00 0.00 39.80 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.570068 TGCCATATCGATATTATATACCGCTA 57.430 34.615 15.33 0.00 0.00 4.26
34 35 7.462571 TGCCATATCGATATTATATACCGCT 57.537 36.000 15.33 0.00 0.00 5.52
35 36 9.967346 ATATGCCATATCGATATTATATACCGC 57.033 33.333 15.33 7.58 0.00 5.68
294 562 2.025418 CGAACCGGCGCTAAAGTGT 61.025 57.895 7.64 0.00 0.00 3.55
339 607 5.014202 GGCACTAAAGAATGGGGACTAAAA 58.986 41.667 0.00 0.00 0.00 1.52
351 619 1.695242 TCTCCAACCGGCACTAAAGAA 59.305 47.619 0.00 0.00 0.00 2.52
376 644 2.407090 GTTCGTAACGGCCTTTAGTGT 58.593 47.619 1.13 0.00 0.00 3.55
399 667 0.605589 GCAGAACCGGCCTTTAGTGT 60.606 55.000 0.00 0.00 0.00 3.55
426 694 1.065998 GGGTGGCGGATTACTGTACAA 60.066 52.381 0.00 0.00 0.00 2.41
427 695 0.538118 GGGTGGCGGATTACTGTACA 59.462 55.000 0.00 0.00 0.00 2.90
428 696 0.538118 TGGGTGGCGGATTACTGTAC 59.462 55.000 0.00 0.00 0.00 2.90
429 697 0.828022 CTGGGTGGCGGATTACTGTA 59.172 55.000 0.00 0.00 0.00 2.74
430 698 1.602237 CTGGGTGGCGGATTACTGT 59.398 57.895 0.00 0.00 0.00 3.55
431 699 1.819632 GCTGGGTGGCGGATTACTG 60.820 63.158 0.00 0.00 0.00 2.74
432 700 2.297895 TGCTGGGTGGCGGATTACT 61.298 57.895 0.00 0.00 34.52 2.24
433 701 2.112815 GTGCTGGGTGGCGGATTAC 61.113 63.158 0.00 0.00 34.52 1.89
434 702 2.252072 GAGTGCTGGGTGGCGGATTA 62.252 60.000 0.00 0.00 34.52 1.75
435 703 3.628646 GAGTGCTGGGTGGCGGATT 62.629 63.158 0.00 0.00 34.52 3.01
436 704 4.101448 GAGTGCTGGGTGGCGGAT 62.101 66.667 0.00 0.00 34.52 4.18
450 718 2.145397 TTAGACATGGAGGAGCGAGT 57.855 50.000 0.00 0.00 0.00 4.18
451 719 3.648009 GAATTAGACATGGAGGAGCGAG 58.352 50.000 0.00 0.00 0.00 5.03
452 720 2.034685 CGAATTAGACATGGAGGAGCGA 59.965 50.000 0.00 0.00 0.00 4.93
453 721 2.223829 ACGAATTAGACATGGAGGAGCG 60.224 50.000 0.00 0.00 0.00 5.03
455 723 6.392625 TTCTACGAATTAGACATGGAGGAG 57.607 41.667 0.00 0.00 36.48 3.69
456 724 6.785337 TTTCTACGAATTAGACATGGAGGA 57.215 37.500 0.00 0.00 36.48 3.71
457 725 7.843490 TTTTTCTACGAATTAGACATGGAGG 57.157 36.000 0.00 0.00 36.48 4.30
459 727 9.098355 CTCATTTTTCTACGAATTAGACATGGA 57.902 33.333 0.00 0.00 36.48 3.41
460 728 7.852945 GCTCATTTTTCTACGAATTAGACATGG 59.147 37.037 0.00 0.00 36.48 3.66
461 729 8.390354 TGCTCATTTTTCTACGAATTAGACATG 58.610 33.333 0.00 0.00 36.48 3.21
462 730 8.492673 TGCTCATTTTTCTACGAATTAGACAT 57.507 30.769 0.00 0.00 36.48 3.06
463 731 7.899178 TGCTCATTTTTCTACGAATTAGACA 57.101 32.000 0.00 0.00 36.48 3.41
465 733 9.817809 ACTATGCTCATTTTTCTACGAATTAGA 57.182 29.630 0.00 0.00 34.77 2.10
470 738 8.942338 ACATACTATGCTCATTTTTCTACGAA 57.058 30.769 0.00 0.00 0.00 3.85
471 739 8.942338 AACATACTATGCTCATTTTTCTACGA 57.058 30.769 0.00 0.00 0.00 3.43
473 741 8.276325 CGGAACATACTATGCTCATTTTTCTAC 58.724 37.037 2.60 0.00 0.00 2.59
474 742 7.441157 CCGGAACATACTATGCTCATTTTTCTA 59.559 37.037 0.00 0.00 0.00 2.10
475 743 6.260936 CCGGAACATACTATGCTCATTTTTCT 59.739 38.462 0.00 0.00 0.00 2.52
477 745 5.885912 ACCGGAACATACTATGCTCATTTTT 59.114 36.000 9.46 0.00 0.00 1.94
479 747 4.816385 CACCGGAACATACTATGCTCATTT 59.184 41.667 9.46 0.00 0.00 2.32
480 748 4.380531 CACCGGAACATACTATGCTCATT 58.619 43.478 9.46 0.00 0.00 2.57
481 749 3.803715 GCACCGGAACATACTATGCTCAT 60.804 47.826 9.46 0.00 0.00 2.90
482 750 2.483013 GCACCGGAACATACTATGCTCA 60.483 50.000 9.46 0.00 0.00 4.26
483 751 2.135933 GCACCGGAACATACTATGCTC 58.864 52.381 9.46 0.00 0.00 4.26
484 752 1.202651 GGCACCGGAACATACTATGCT 60.203 52.381 9.46 0.00 0.00 3.79
486 754 1.878953 GGGCACCGGAACATACTATG 58.121 55.000 9.46 0.00 40.86 2.23
500 768 1.255667 TGACGTAGAAGAGGGGGCAC 61.256 60.000 0.00 0.00 0.00 5.01
501 769 0.325296 ATGACGTAGAAGAGGGGGCA 60.325 55.000 0.00 0.00 0.00 5.36
502 770 0.389757 GATGACGTAGAAGAGGGGGC 59.610 60.000 0.00 0.00 0.00 5.80
514 782 9.031537 TGTCCCACTAATATATTATGATGACGT 57.968 33.333 5.64 0.00 0.00 4.34
515 783 9.521503 CTGTCCCACTAATATATTATGATGACG 57.478 37.037 5.64 0.00 0.00 4.35
517 785 9.271921 AGCTGTCCCACTAATATATTATGATGA 57.728 33.333 5.64 5.04 0.00 2.92
518 786 9.896645 AAGCTGTCCCACTAATATATTATGATG 57.103 33.333 5.64 5.41 0.00 3.07
520 788 9.944376 GAAAGCTGTCCCACTAATATATTATGA 57.056 33.333 5.64 0.00 0.00 2.15
521 789 9.167311 GGAAAGCTGTCCCACTAATATATTATG 57.833 37.037 12.49 6.74 0.00 1.90
522 790 8.890472 TGGAAAGCTGTCCCACTAATATATTAT 58.110 33.333 20.80 0.00 36.80 1.28
523 791 8.154856 GTGGAAAGCTGTCCCACTAATATATTA 58.845 37.037 20.80 5.10 45.08 0.98
524 792 6.998673 GTGGAAAGCTGTCCCACTAATATATT 59.001 38.462 20.80 2.97 45.08 1.28
525 793 6.534634 GTGGAAAGCTGTCCCACTAATATAT 58.465 40.000 20.80 0.00 45.08 0.86
526 794 5.925509 GTGGAAAGCTGTCCCACTAATATA 58.074 41.667 20.80 0.00 45.08 0.86
600 2800 3.706594 TGCATCTCTATTCCCGAGTTCTT 59.293 43.478 0.00 0.00 0.00 2.52
623 2823 4.681978 AACGCGTCCCAGCCTCAC 62.682 66.667 14.44 0.00 0.00 3.51
636 2836 3.120511 GGAGTCTTCTGTTTGATCAACGC 60.121 47.826 7.89 4.97 38.36 4.84
694 2926 2.407696 CGAGCTAGCATGTGATTCGATG 59.592 50.000 18.83 0.00 0.00 3.84
704 2944 2.028658 ACCCATATCACGAGCTAGCATG 60.029 50.000 18.83 12.15 0.00 4.06
705 2945 2.028658 CACCCATATCACGAGCTAGCAT 60.029 50.000 18.83 3.43 0.00 3.79
706 2946 1.341209 CACCCATATCACGAGCTAGCA 59.659 52.381 18.83 0.00 0.00 3.49
741 2981 1.165907 TGACACGTCCGTACCTTCGT 61.166 55.000 0.00 0.00 36.99 3.85
947 3260 2.854185 GCTCAAACAAACTGACAACAGC 59.146 45.455 0.00 0.00 46.95 4.40
1054 3383 1.003580 AGAAGACGTACGTACCTGGGA 59.996 52.381 22.87 0.00 0.00 4.37
1137 3513 1.065600 CCTGCAAACACCAACACCG 59.934 57.895 0.00 0.00 0.00 4.94
1471 6057 4.111016 TGTACTGCGCCGTCTCCG 62.111 66.667 8.05 0.00 0.00 4.63
1472 6058 2.506438 GTGTACTGCGCCGTCTCC 60.506 66.667 8.05 0.00 0.00 3.71
1678 6318 2.964209 TCTAGTGATCCCTGGTGATCC 58.036 52.381 17.22 11.27 40.37 3.36
1706 6351 2.247311 AAGCAAATTAAGCGCGAGTG 57.753 45.000 12.10 0.00 37.01 3.51
1707 6352 2.724839 CGAAAGCAAATTAAGCGCGAGT 60.725 45.455 12.10 0.00 37.01 4.18
1739 6384 6.721571 ACTGGAACGTAAAATGTGTATCAG 57.278 37.500 0.00 0.00 0.00 2.90
1779 6428 1.154413 CAACAAGATGTGCGTCCGC 60.154 57.895 4.42 4.42 42.35 5.54
1780 6429 1.424403 TACAACAAGATGTGCGTCCG 58.576 50.000 0.00 0.00 34.75 4.79
1781 6430 3.250040 AGTTTACAACAAGATGTGCGTCC 59.750 43.478 0.00 0.00 34.75 4.79
1782 6431 4.211374 AGAGTTTACAACAAGATGTGCGTC 59.789 41.667 0.00 0.00 34.75 5.19
1783 6432 4.127171 AGAGTTTACAACAAGATGTGCGT 58.873 39.130 0.00 0.00 34.75 5.24
1784 6433 4.377431 GGAGAGTTTACAACAAGATGTGCG 60.377 45.833 0.00 0.00 34.75 5.34
1806 6456 1.209019 AGGACACTGAGCAGCATAAGG 59.791 52.381 0.00 0.00 0.00 2.69
1807 6457 2.687700 AGGACACTGAGCAGCATAAG 57.312 50.000 0.00 0.00 0.00 1.73
1825 6475 1.135139 CAGACATCCGTACTGACCCAG 59.865 57.143 0.00 0.00 37.52 4.45
1832 6492 0.034767 TCCCGTCAGACATCCGTACT 60.035 55.000 0.41 0.00 0.00 2.73
1836 6496 0.031314 CATCTCCCGTCAGACATCCG 59.969 60.000 0.41 0.00 0.00 4.18
2020 6710 0.396435 TTCCTGCCGTCAGTGAACAT 59.604 50.000 0.00 0.00 38.66 2.71
2048 6738 6.761242 TCATATGTTGGTAAATCTGAAGACGG 59.239 38.462 1.90 0.00 0.00 4.79
2072 6762 0.536460 TCGGGCTCCACCAAAAGTTC 60.536 55.000 0.00 0.00 42.05 3.01
2073 6763 0.822121 GTCGGGCTCCACCAAAAGTT 60.822 55.000 0.00 0.00 42.05 2.66
2075 6765 1.228124 TGTCGGGCTCCACCAAAAG 60.228 57.895 0.00 0.00 42.05 2.27
2081 7069 1.374758 CTCAAGTGTCGGGCTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
2088 7076 0.804989 GGAATTGCCTCAAGTGTCGG 59.195 55.000 0.00 0.00 0.00 4.79
2089 7077 1.813513 AGGAATTGCCTCAAGTGTCG 58.186 50.000 0.00 0.00 46.97 4.35
2119 7109 6.227522 TGAAGGACGATGAATGTTCTTTGTA 58.772 36.000 0.00 0.00 35.30 2.41
2124 7114 5.350504 AGATGAAGGACGATGAATGTTCT 57.649 39.130 0.00 0.00 0.00 3.01
2125 7115 6.276847 AGTAGATGAAGGACGATGAATGTTC 58.723 40.000 0.00 0.00 0.00 3.18
2127 7117 5.221342 GGAGTAGATGAAGGACGATGAATGT 60.221 44.000 0.00 0.00 0.00 2.71
2128 7118 5.226396 GGAGTAGATGAAGGACGATGAATG 58.774 45.833 0.00 0.00 0.00 2.67
2129 7119 4.282195 GGGAGTAGATGAAGGACGATGAAT 59.718 45.833 0.00 0.00 0.00 2.57
2130 7120 3.637229 GGGAGTAGATGAAGGACGATGAA 59.363 47.826 0.00 0.00 0.00 2.57
2131 7121 3.117474 AGGGAGTAGATGAAGGACGATGA 60.117 47.826 0.00 0.00 0.00 2.92
2135 7125 1.957877 GGAGGGAGTAGATGAAGGACG 59.042 57.143 0.00 0.00 0.00 4.79
2147 7137 0.466963 AAAACGTTCACGGAGGGAGT 59.533 50.000 0.00 0.00 44.95 3.85
2148 7138 1.263217 CAAAAACGTTCACGGAGGGAG 59.737 52.381 0.00 0.00 44.95 4.30
2149 7139 1.134461 TCAAAAACGTTCACGGAGGGA 60.134 47.619 0.00 0.00 44.95 4.20
2150 7140 1.003223 GTCAAAAACGTTCACGGAGGG 60.003 52.381 0.00 0.00 44.95 4.30
2151 7141 1.666700 TGTCAAAAACGTTCACGGAGG 59.333 47.619 0.00 0.00 44.95 4.30
2152 7142 2.350498 AGTGTCAAAAACGTTCACGGAG 59.650 45.455 0.00 0.00 44.95 4.63
2153 7143 2.348660 AGTGTCAAAAACGTTCACGGA 58.651 42.857 0.00 0.00 44.95 4.69
2154 7144 2.817538 AGTGTCAAAAACGTTCACGG 57.182 45.000 0.00 0.00 44.95 4.94
2155 7145 3.998522 AGAAGTGTCAAAAACGTTCACG 58.001 40.909 0.00 0.00 46.33 4.35
2156 7146 7.784790 TTTAAGAAGTGTCAAAAACGTTCAC 57.215 32.000 0.00 5.02 0.00 3.18
2157 7147 8.973835 AATTTAAGAAGTGTCAAAAACGTTCA 57.026 26.923 0.00 0.00 0.00 3.18
2178 7168 9.813826 CTCCCTCTGTCCCATAATTTATAATTT 57.186 33.333 0.00 0.00 0.00 1.82
2179 7169 8.960064 ACTCCCTCTGTCCCATAATTTATAATT 58.040 33.333 0.00 0.00 0.00 1.40
2180 7170 8.525729 ACTCCCTCTGTCCCATAATTTATAAT 57.474 34.615 0.00 0.00 0.00 1.28
2181 7171 7.947782 ACTCCCTCTGTCCCATAATTTATAA 57.052 36.000 0.00 0.00 0.00 0.98
2182 7172 9.629649 AATACTCCCTCTGTCCCATAATTTATA 57.370 33.333 0.00 0.00 0.00 0.98
2183 7173 8.525729 AATACTCCCTCTGTCCCATAATTTAT 57.474 34.615 0.00 0.00 0.00 1.40
2184 7174 7.947782 AATACTCCCTCTGTCCCATAATTTA 57.052 36.000 0.00 0.00 0.00 1.40
2185 7175 6.848562 AATACTCCCTCTGTCCCATAATTT 57.151 37.500 0.00 0.00 0.00 1.82
2186 7176 6.848562 AAATACTCCCTCTGTCCCATAATT 57.151 37.500 0.00 0.00 0.00 1.40
2187 7177 6.848562 AAAATACTCCCTCTGTCCCATAAT 57.151 37.500 0.00 0.00 0.00 1.28
2188 7178 6.216662 TGAAAAATACTCCCTCTGTCCCATAA 59.783 38.462 0.00 0.00 0.00 1.90
2189 7179 5.729229 TGAAAAATACTCCCTCTGTCCCATA 59.271 40.000 0.00 0.00 0.00 2.74
2190 7180 4.540099 TGAAAAATACTCCCTCTGTCCCAT 59.460 41.667 0.00 0.00 0.00 4.00
2191 7181 3.913799 TGAAAAATACTCCCTCTGTCCCA 59.086 43.478 0.00 0.00 0.00 4.37
2192 7182 4.569719 TGAAAAATACTCCCTCTGTCCC 57.430 45.455 0.00 0.00 0.00 4.46
2193 7183 4.396478 GCTTGAAAAATACTCCCTCTGTCC 59.604 45.833 0.00 0.00 0.00 4.02
2194 7184 5.003804 TGCTTGAAAAATACTCCCTCTGTC 58.996 41.667 0.00 0.00 0.00 3.51
2195 7185 4.985538 TGCTTGAAAAATACTCCCTCTGT 58.014 39.130 0.00 0.00 0.00 3.41
2196 7186 5.248640 TCTGCTTGAAAAATACTCCCTCTG 58.751 41.667 0.00 0.00 0.00 3.35
2197 7187 5.505181 TCTGCTTGAAAAATACTCCCTCT 57.495 39.130 0.00 0.00 0.00 3.69
2198 7188 6.765915 AATCTGCTTGAAAAATACTCCCTC 57.234 37.500 0.00 0.00 0.00 4.30
2199 7189 8.829373 ATAAATCTGCTTGAAAAATACTCCCT 57.171 30.769 0.00 0.00 0.00 4.20
2238 7245 2.375174 AGCCATGGTAGGTGAAACAGAA 59.625 45.455 14.67 0.00 39.98 3.02
2327 7334 8.445275 TCTTTCTGTTGTGTTCTATTGCTAAA 57.555 30.769 0.00 0.00 0.00 1.85
2331 7338 7.588512 AGATTCTTTCTGTTGTGTTCTATTGC 58.411 34.615 0.00 0.00 31.79 3.56
2336 7343 9.396022 TCTTTTAGATTCTTTCTGTTGTGTTCT 57.604 29.630 0.00 0.00 35.79 3.01
2365 7375 2.789409 AGGGCACTTCCTATTGTGTC 57.211 50.000 0.00 0.00 37.99 3.67
2372 7382 3.031736 GACTGTGATAGGGCACTTCCTA 58.968 50.000 0.00 0.00 42.91 2.94
2389 7400 2.892852 TGGCCCTTTCTTTTGATGACTG 59.107 45.455 0.00 0.00 0.00 3.51
2445 7456 7.942145 ATACGCGTGTAAACAAATTATGAAC 57.058 32.000 24.59 0.00 33.44 3.18
2448 7459 7.796660 AGCATATACGCGTGTAAACAAATTATG 59.203 33.333 24.59 13.11 36.85 1.90
2453 7464 4.865925 AGAGCATATACGCGTGTAAACAAA 59.134 37.500 24.59 0.00 36.85 2.83
2463 7474 5.164177 GCTTAAAGTGTAGAGCATATACGCG 60.164 44.000 3.53 3.53 38.40 6.01
2464 7475 5.690409 TGCTTAAAGTGTAGAGCATATACGC 59.310 40.000 0.00 0.00 39.97 4.42
2488 7499 6.751514 TCATGGAACGTAAGCAAAATGTAT 57.248 33.333 0.00 0.00 45.62 2.29
2521 7532 8.389779 TGAAATTTCTGTGATAGTTGTTGCTA 57.610 30.769 18.64 0.00 0.00 3.49
2557 7589 9.862371 CCTGTGGAGAAGTGTATATATTATCAC 57.138 37.037 0.00 0.00 0.00 3.06
2558 7590 9.601810 ACCTGTGGAGAAGTGTATATATTATCA 57.398 33.333 0.00 0.00 0.00 2.15
2561 7593 9.871175 TGTACCTGTGGAGAAGTGTATATATTA 57.129 33.333 0.00 0.00 0.00 0.98
2562 7594 8.777578 TGTACCTGTGGAGAAGTGTATATATT 57.222 34.615 0.00 0.00 0.00 1.28
2563 7595 8.777578 TTGTACCTGTGGAGAAGTGTATATAT 57.222 34.615 0.00 0.00 0.00 0.86
2564 7596 8.638873 CATTGTACCTGTGGAGAAGTGTATATA 58.361 37.037 0.00 0.00 0.00 0.86
2565 7597 7.500992 CATTGTACCTGTGGAGAAGTGTATAT 58.499 38.462 0.00 0.00 0.00 0.86
2566 7598 6.629515 GCATTGTACCTGTGGAGAAGTGTATA 60.630 42.308 0.00 0.00 0.00 1.47
2567 7599 5.734720 CATTGTACCTGTGGAGAAGTGTAT 58.265 41.667 0.00 0.00 0.00 2.29
2568 7600 4.562757 GCATTGTACCTGTGGAGAAGTGTA 60.563 45.833 0.00 0.00 0.00 2.90
2569 7601 3.807209 GCATTGTACCTGTGGAGAAGTGT 60.807 47.826 0.00 0.00 0.00 3.55
2578 7610 1.820519 AGCATTGGCATTGTACCTGTG 59.179 47.619 10.72 0.00 44.61 3.66
2588 7620 7.230108 GGAGCATATATTATACAGCATTGGCAT 59.770 37.037 10.74 0.00 44.61 4.40
2589 7621 6.543465 GGAGCATATATTATACAGCATTGGCA 59.457 38.462 10.74 0.00 44.61 4.92
2602 7634 4.930696 TGAGACGGAGGGAGCATATATTA 58.069 43.478 0.00 0.00 0.00 0.98
2603 7635 3.779444 TGAGACGGAGGGAGCATATATT 58.221 45.455 0.00 0.00 0.00 1.28
2604 7636 3.458044 TGAGACGGAGGGAGCATATAT 57.542 47.619 0.00 0.00 0.00 0.86
2607 7639 1.860641 TTTGAGACGGAGGGAGCATA 58.139 50.000 0.00 0.00 0.00 3.14
2608 7640 0.984230 TTTTGAGACGGAGGGAGCAT 59.016 50.000 0.00 0.00 0.00 3.79
2609 7641 0.984230 ATTTTGAGACGGAGGGAGCA 59.016 50.000 0.00 0.00 0.00 4.26
2610 7642 2.010497 GAATTTTGAGACGGAGGGAGC 58.990 52.381 0.00 0.00 0.00 4.70
2611 7643 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
2613 7645 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
2614 7646 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
2615 7647 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
2616 7648 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
2617 7649 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
2618 7650 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
2621 7653 9.617975 GGACAAATCTAAGACAAGAATTTTGAG 57.382 33.333 6.85 0.00 33.05 3.02
2622 7654 9.130661 TGGACAAATCTAAGACAAGAATTTTGA 57.869 29.630 6.85 0.00 33.05 2.69
2623 7655 9.748708 TTGGACAAATCTAAGACAAGAATTTTG 57.251 29.630 0.00 0.00 34.13 2.44
2628 7660 8.717821 CGTATTTGGACAAATCTAAGACAAGAA 58.282 33.333 13.07 0.00 40.99 2.52
2629 7661 7.333423 CCGTATTTGGACAAATCTAAGACAAGA 59.667 37.037 13.07 0.00 40.99 3.02
2630 7662 7.333423 TCCGTATTTGGACAAATCTAAGACAAG 59.667 37.037 13.07 2.30 40.99 3.16
2631 7663 7.162761 TCCGTATTTGGACAAATCTAAGACAA 58.837 34.615 13.07 0.00 40.99 3.18
2632 7664 6.703319 TCCGTATTTGGACAAATCTAAGACA 58.297 36.000 13.07 0.00 40.99 3.41
2633 7665 7.280205 ACATCCGTATTTGGACAAATCTAAGAC 59.720 37.037 13.07 5.74 41.85 3.01
2634 7666 7.335627 ACATCCGTATTTGGACAAATCTAAGA 58.664 34.615 13.07 7.57 41.85 2.10
2635 7667 7.553881 ACATCCGTATTTGGACAAATCTAAG 57.446 36.000 13.07 1.07 41.85 2.18
2636 7668 9.268268 GATACATCCGTATTTGGACAAATCTAA 57.732 33.333 13.07 0.00 41.85 2.10
2637 7669 8.425703 TGATACATCCGTATTTGGACAAATCTA 58.574 33.333 13.07 0.00 41.85 1.98
2638 7670 7.279615 TGATACATCCGTATTTGGACAAATCT 58.720 34.615 13.07 0.00 41.85 2.40
2639 7671 7.490962 TGATACATCCGTATTTGGACAAATC 57.509 36.000 13.07 5.63 41.85 2.17
2640 7672 7.556275 ACTTGATACATCCGTATTTGGACAAAT 59.444 33.333 14.02 14.02 41.85 2.32
2641 7673 6.882140 ACTTGATACATCCGTATTTGGACAAA 59.118 34.615 0.00 0.00 41.85 2.83
2642 7674 6.411376 ACTTGATACATCCGTATTTGGACAA 58.589 36.000 0.00 0.00 41.85 3.18
2643 7675 5.984725 ACTTGATACATCCGTATTTGGACA 58.015 37.500 0.00 0.00 41.85 4.02
2644 7676 6.018994 GTGACTTGATACATCCGTATTTGGAC 60.019 42.308 0.00 0.00 41.85 4.02
2645 7677 6.046593 GTGACTTGATACATCCGTATTTGGA 58.953 40.000 0.00 0.00 43.58 3.53
2646 7678 5.051039 CGTGACTTGATACATCCGTATTTGG 60.051 44.000 0.00 0.00 38.48 3.28
2647 7679 5.518847 ACGTGACTTGATACATCCGTATTTG 59.481 40.000 0.00 0.00 38.48 2.32
2648 7680 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
2649 7681 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
2650 7682 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
2651 7683 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
2652 7684 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
2653 7685 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
2654 7686 6.367969 ACACTAAAACGTGACTTGATACATCC 59.632 38.462 0.00 0.00 38.27 3.51
2655 7687 7.347508 ACACTAAAACGTGACTTGATACATC 57.652 36.000 0.00 0.00 38.27 3.06
2656 7688 7.724305 AACACTAAAACGTGACTTGATACAT 57.276 32.000 0.00 0.00 38.27 2.29
2657 7689 7.383029 CCTAACACTAAAACGTGACTTGATACA 59.617 37.037 0.00 0.00 38.27 2.29
2658 7690 7.383300 ACCTAACACTAAAACGTGACTTGATAC 59.617 37.037 0.00 0.00 38.27 2.24
2659 7691 7.436118 ACCTAACACTAAAACGTGACTTGATA 58.564 34.615 0.00 0.00 38.27 2.15
2660 7692 6.285990 ACCTAACACTAAAACGTGACTTGAT 58.714 36.000 0.00 0.00 38.27 2.57
2661 7693 5.663456 ACCTAACACTAAAACGTGACTTGA 58.337 37.500 0.00 0.00 38.27 3.02
2662 7694 5.978934 ACCTAACACTAAAACGTGACTTG 57.021 39.130 0.00 0.00 38.27 3.16
2663 7695 6.572519 TGTACCTAACACTAAAACGTGACTT 58.427 36.000 0.00 0.00 38.27 3.01
2664 7696 6.147864 TGTACCTAACACTAAAACGTGACT 57.852 37.500 0.00 0.00 38.27 3.41
2665 7697 6.089954 GGATGTACCTAACACTAAAACGTGAC 59.910 42.308 0.00 0.00 42.09 3.67
2666 7698 6.158598 GGATGTACCTAACACTAAAACGTGA 58.841 40.000 0.00 0.00 42.09 4.35
2667 7699 5.061311 CGGATGTACCTAACACTAAAACGTG 59.939 44.000 0.00 0.00 42.09 4.49
2668 7700 5.163513 CGGATGTACCTAACACTAAAACGT 58.836 41.667 0.00 0.00 42.09 3.99
2669 7701 5.163513 ACGGATGTACCTAACACTAAAACG 58.836 41.667 0.00 0.00 42.09 3.60
2670 7702 8.193438 AGATACGGATGTACCTAACACTAAAAC 58.807 37.037 0.00 0.00 42.09 2.43
2671 7703 8.297470 AGATACGGATGTACCTAACACTAAAA 57.703 34.615 0.00 0.00 42.09 1.52
2672 7704 7.886629 AGATACGGATGTACCTAACACTAAA 57.113 36.000 0.00 0.00 42.09 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.