Multiple sequence alignment - TraesCS1B01G381400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G381400 chr1B 100.000 2623 0 0 1 2623 614277210 614279832 0.000000e+00 4844.0
1 TraesCS1B01G381400 chr1B 85.182 1073 51 27 592 1623 614291946 614292951 0.000000e+00 1002.0
2 TraesCS1B01G381400 chr1B 94.575 424 18 3 2006 2425 667266107 667265685 0.000000e+00 651.0
3 TraesCS1B01G381400 chr1B 88.855 332 31 5 1261 1589 614420575 614420903 1.130000e-108 403.0
4 TraesCS1B01G381400 chr1B 86.704 361 34 9 1185 1536 614442803 614443158 3.170000e-104 388.0
5 TraesCS1B01G381400 chr1B 87.538 329 40 1 1261 1589 614425837 614426164 1.910000e-101 379.0
6 TraesCS1B01G381400 chr1B 76.170 470 73 23 813 1260 614183242 614183694 7.360000e-51 211.0
7 TraesCS1B01G381400 chr1B 85.417 144 7 5 1602 1745 614184138 614184267 1.270000e-28 137.0
8 TraesCS1B01G381400 chr1D 88.462 1066 64 21 592 1620 448388553 448389596 0.000000e+00 1232.0
9 TraesCS1B01G381400 chr1D 86.075 1149 72 35 510 1620 448423695 448424793 0.000000e+00 1155.0
10 TraesCS1B01G381400 chr1D 87.376 808 37 26 621 1385 448376408 448377193 0.000000e+00 867.0
11 TraesCS1B01G381400 chr1D 89.276 373 18 4 1374 1745 448377149 448377500 5.150000e-122 448.0
12 TraesCS1B01G381400 chr1D 87.917 240 21 3 25 257 448375587 448375825 2.570000e-70 276.0
13 TraesCS1B01G381400 chr1D 92.513 187 9 2 2426 2608 448377495 448377680 2.000000e-66 263.0
14 TraesCS1B01G381400 chr1D 75.738 474 78 25 813 1268 448283059 448283513 1.230000e-48 204.0
15 TraesCS1B01G381400 chr1D 87.013 154 7 4 1592 1745 448283963 448284103 7.510000e-36 161.0
16 TraesCS1B01G381400 chr1D 76.800 125 19 9 1185 1302 448440265 448440386 7.840000e-06 62.1
17 TraesCS1B01G381400 chr1A 87.164 966 53 37 642 1540 544197842 544198803 0.000000e+00 1031.0
18 TraesCS1B01G381400 chr1A 89.982 549 22 16 698 1227 544194205 544194739 0.000000e+00 678.0
19 TraesCS1B01G381400 chr1A 86.143 433 44 11 1184 1606 544318871 544319297 1.110000e-123 453.0
20 TraesCS1B01G381400 chr1A 90.820 305 25 1 1374 1675 544194820 544195124 3.140000e-109 405.0
21 TraesCS1B01G381400 chr1A 88.750 320 36 0 1261 1580 544293416 544293735 2.450000e-105 392.0
22 TraesCS1B01G381400 chr1A 87.879 330 31 4 25 345 544192457 544192786 1.910000e-101 379.0
23 TraesCS1B01G381400 chr1A 76.749 486 72 26 813 1268 544176531 544177005 1.570000e-57 233.0
24 TraesCS1B01G381400 chr1A 83.688 141 9 5 1602 1742 544177477 544177603 1.280000e-23 121.0
25 TraesCS1B01G381400 chr3B 95.082 427 16 3 2003 2425 720896768 720897193 0.000000e+00 667.0
26 TraesCS1B01G381400 chr3B 93.077 260 18 0 1745 2004 719427805 719428064 5.300000e-102 381.0
27 TraesCS1B01G381400 chr7B 94.836 426 15 3 2006 2425 501164152 501163728 0.000000e+00 658.0
28 TraesCS1B01G381400 chr7B 94.172 429 15 4 2006 2425 109039735 109040162 0.000000e+00 645.0
29 TraesCS1B01G381400 chr7B 93.487 261 17 0 1745 2005 501164923 501164663 3.170000e-104 388.0
30 TraesCS1B01G381400 chr7B 93.436 259 15 2 1747 2005 109038073 109038329 1.470000e-102 383.0
31 TraesCS1B01G381400 chr7B 92.720 261 19 0 1745 2005 254118831 254118571 6.850000e-101 377.0
32 TraesCS1B01G381400 chr2B 94.379 427 21 2 2006 2430 631720998 631721423 0.000000e+00 652.0
33 TraesCS1B01G381400 chr2B 93.077 260 17 1 1745 2004 585191312 585191570 1.910000e-101 379.0
34 TraesCS1B01G381400 chr4B 94.353 425 19 3 2003 2423 615312225 615312648 0.000000e+00 647.0
35 TraesCS1B01G381400 chr5B 93.953 430 18 4 2003 2425 546718509 546718937 0.000000e+00 643.0
36 TraesCS1B01G381400 chr5B 91.923 260 20 1 1745 2004 654765584 654765326 1.920000e-96 363.0
37 TraesCS1B01G381400 chr6B 93.706 429 20 3 2003 2425 487544418 487544845 1.020000e-178 636.0
38 TraesCS1B01G381400 chr6B 93.870 261 16 0 1745 2005 487542753 487543013 6.800000e-106 394.0
39 TraesCS1B01G381400 chrUn 90.951 431 27 4 2006 2425 215036861 215036432 1.050000e-158 569.0
40 TraesCS1B01G381400 chrUn 91.923 260 21 0 1745 2004 361712602 361712343 5.340000e-97 364.0
41 TraesCS1B01G381400 chr4A 91.923 260 21 0 1745 2004 619565866 619566125 5.340000e-97 364.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G381400 chr1B 614277210 614279832 2622 False 4844.00 4844 100.00000 1 2623 1 chr1B.!!$F1 2622
1 TraesCS1B01G381400 chr1B 614291946 614292951 1005 False 1002.00 1002 85.18200 592 1623 1 chr1B.!!$F2 1031
2 TraesCS1B01G381400 chr1D 448388553 448389596 1043 False 1232.00 1232 88.46200 592 1620 1 chr1D.!!$F1 1028
3 TraesCS1B01G381400 chr1D 448423695 448424793 1098 False 1155.00 1155 86.07500 510 1620 1 chr1D.!!$F2 1110
4 TraesCS1B01G381400 chr1D 448375587 448377680 2093 False 463.50 867 89.27050 25 2608 4 chr1D.!!$F5 2583
5 TraesCS1B01G381400 chr1A 544192457 544198803 6346 False 623.25 1031 88.96125 25 1675 4 chr1A.!!$F4 1650
6 TraesCS1B01G381400 chr7B 501163728 501164923 1195 True 523.00 658 94.16150 1745 2425 2 chr7B.!!$R2 680
7 TraesCS1B01G381400 chr7B 109038073 109040162 2089 False 514.00 645 93.80400 1747 2425 2 chr7B.!!$F1 678
8 TraesCS1B01G381400 chr6B 487542753 487544845 2092 False 515.00 636 93.78800 1745 2425 2 chr6B.!!$F1 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 142 0.178973 TCTTCCCACTCACCTCGACA 60.179 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 7245 0.096976 CGCGGCTGTTGGACTAAATG 59.903 55.0 0.0 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.736244 TGCCTAATATTCCAACAAAAACTACTC 58.264 33.333 0.00 0.00 0.00 2.59
56 57 7.400052 ACTCCATGGTTTAAAAGCCATAAGAAT 59.600 33.333 12.58 6.56 46.57 2.40
88 89 5.503498 TCAAAGTAACACACAATTGCGTAC 58.497 37.500 5.05 0.00 0.00 3.67
97 98 5.021389 CACACAATTGCGTACATATGACAC 58.979 41.667 10.38 5.97 0.00 3.67
105 106 4.808895 TGCGTACATATGACACCAAATCTC 59.191 41.667 10.38 0.00 0.00 2.75
127 128 1.909302 TCTCCCATTCTTCCCACTCAC 59.091 52.381 0.00 0.00 0.00 3.51
134 142 0.178973 TCTTCCCACTCACCTCGACA 60.179 55.000 0.00 0.00 0.00 4.35
151 159 2.456989 GACAATGCCATGATTCTTGCG 58.543 47.619 0.00 0.00 0.00 4.85
215 225 6.176183 AGCCGCATCTATCTATTGCTATTTT 58.824 36.000 0.00 0.00 34.23 1.82
247 257 1.355210 CGCCAGCTTTTCGTGTGTT 59.645 52.632 0.00 0.00 0.00 3.32
259 269 1.200716 TCGTGTGTTAGACGGTCATCC 59.799 52.381 11.27 0.00 37.43 3.51
285 295 3.489180 ACGACACTTTCTAGGTCATCG 57.511 47.619 0.00 0.00 0.00 3.84
297 307 0.798776 GGTCATCGAGGCACAACTTG 59.201 55.000 0.00 0.00 0.00 3.16
321 518 5.125578 GGAAAATCAAGTAGACCACATTCCC 59.874 44.000 0.00 0.00 0.00 3.97
322 519 3.933861 ATCAAGTAGACCACATTCCCC 57.066 47.619 0.00 0.00 0.00 4.81
323 520 2.626785 TCAAGTAGACCACATTCCCCA 58.373 47.619 0.00 0.00 0.00 4.96
338 536 7.257722 CACATTCCCCACTTACAAAATCATAC 58.742 38.462 0.00 0.00 0.00 2.39
339 537 7.122650 CACATTCCCCACTTACAAAATCATACT 59.877 37.037 0.00 0.00 0.00 2.12
356 564 1.348064 ACTCCCTCCGATTGACACAA 58.652 50.000 0.00 0.00 0.00 3.33
362 570 3.193263 CCTCCGATTGACACAATCTCTG 58.807 50.000 18.07 9.58 0.00 3.35
369 577 6.456047 CCGATTGACACAATCTCTGTACAATG 60.456 42.308 18.07 0.00 40.78 2.82
370 578 6.091305 CGATTGACACAATCTCTGTACAATGT 59.909 38.462 18.07 0.00 40.78 2.71
371 579 7.275560 CGATTGACACAATCTCTGTACAATGTA 59.724 37.037 18.07 0.00 40.78 2.29
372 580 7.889589 TTGACACAATCTCTGTACAATGTAG 57.110 36.000 0.00 0.00 36.10 2.74
373 581 6.993079 TGACACAATCTCTGTACAATGTAGT 58.007 36.000 0.00 0.20 36.10 2.73
374 582 8.117813 TGACACAATCTCTGTACAATGTAGTA 57.882 34.615 0.00 0.00 36.10 1.82
375 583 8.749354 TGACACAATCTCTGTACAATGTAGTAT 58.251 33.333 0.00 0.00 36.10 2.12
403 739 3.955650 TCAGCTCTACTAAACACCCAC 57.044 47.619 0.00 0.00 0.00 4.61
410 746 5.163581 GCTCTACTAAACACCCACGAATAGA 60.164 44.000 0.00 0.00 0.00 1.98
412 748 7.230849 TCTACTAAACACCCACGAATAGAAA 57.769 36.000 0.00 0.00 0.00 2.52
414 750 8.149647 TCTACTAAACACCCACGAATAGAAAAA 58.850 33.333 0.00 0.00 0.00 1.94
415 751 7.754851 ACTAAACACCCACGAATAGAAAAAT 57.245 32.000 0.00 0.00 0.00 1.82
416 752 8.851541 ACTAAACACCCACGAATAGAAAAATA 57.148 30.769 0.00 0.00 0.00 1.40
417 753 9.457436 ACTAAACACCCACGAATAGAAAAATAT 57.543 29.630 0.00 0.00 0.00 1.28
418 754 9.716507 CTAAACACCCACGAATAGAAAAATATG 57.283 33.333 0.00 0.00 0.00 1.78
419 755 7.931578 AACACCCACGAATAGAAAAATATGA 57.068 32.000 0.00 0.00 0.00 2.15
420 756 7.931578 ACACCCACGAATAGAAAAATATGAA 57.068 32.000 0.00 0.00 0.00 2.57
421 757 8.343168 ACACCCACGAATAGAAAAATATGAAA 57.657 30.769 0.00 0.00 0.00 2.69
422 758 8.966868 ACACCCACGAATAGAAAAATATGAAAT 58.033 29.630 0.00 0.00 0.00 2.17
423 759 9.450807 CACCCACGAATAGAAAAATATGAAATC 57.549 33.333 0.00 0.00 0.00 2.17
424 760 8.342634 ACCCACGAATAGAAAAATATGAAATCG 58.657 33.333 0.00 0.00 0.00 3.34
425 761 8.342634 CCCACGAATAGAAAAATATGAAATCGT 58.657 33.333 0.00 0.00 40.02 3.73
427 763 8.673275 CACGAATAGAAAAATATGAAATCGTGC 58.327 33.333 0.00 0.00 46.15 5.34
428 764 8.394877 ACGAATAGAAAAATATGAAATCGTGCA 58.605 29.630 0.00 0.00 38.25 4.57
429 765 9.220635 CGAATAGAAAAATATGAAATCGTGCAA 57.779 29.630 0.00 0.00 0.00 4.08
433 769 8.624701 AGAAAAATATGAAATCGTGCAATGAG 57.375 30.769 0.00 0.00 33.81 2.90
434 770 8.461222 AGAAAAATATGAAATCGTGCAATGAGA 58.539 29.630 0.00 0.00 33.81 3.27
435 771 7.975866 AAAATATGAAATCGTGCAATGAGAC 57.024 32.000 0.00 0.00 33.81 3.36
436 772 6.932356 AATATGAAATCGTGCAATGAGACT 57.068 33.333 0.00 0.00 33.81 3.24
437 773 6.932356 ATATGAAATCGTGCAATGAGACTT 57.068 33.333 0.00 0.00 33.81 3.01
438 774 4.408993 TGAAATCGTGCAATGAGACTTG 57.591 40.909 0.00 0.00 33.81 3.16
439 775 3.189080 TGAAATCGTGCAATGAGACTTGG 59.811 43.478 0.00 0.00 33.81 3.61
440 776 2.768253 ATCGTGCAATGAGACTTGGA 57.232 45.000 0.00 0.00 33.81 3.53
441 777 1.795768 TCGTGCAATGAGACTTGGAC 58.204 50.000 0.00 0.00 42.16 4.02
442 778 1.069978 TCGTGCAATGAGACTTGGACA 59.930 47.619 8.75 0.00 44.79 4.02
443 779 1.195448 CGTGCAATGAGACTTGGACAC 59.805 52.381 8.75 0.00 44.79 3.67
444 780 1.195448 GTGCAATGAGACTTGGACACG 59.805 52.381 3.95 0.00 44.20 4.49
445 781 1.202639 TGCAATGAGACTTGGACACGT 60.203 47.619 0.00 0.00 0.00 4.49
446 782 1.461127 GCAATGAGACTTGGACACGTC 59.539 52.381 1.13 1.13 0.00 4.34
447 783 2.754472 CAATGAGACTTGGACACGTCA 58.246 47.619 10.89 0.00 32.67 4.35
448 784 2.732412 ATGAGACTTGGACACGTCAG 57.268 50.000 10.89 0.00 32.67 3.51
449 785 1.687563 TGAGACTTGGACACGTCAGA 58.312 50.000 10.89 0.00 32.67 3.27
450 786 2.028876 TGAGACTTGGACACGTCAGAA 58.971 47.619 10.89 0.00 32.67 3.02
451 787 2.034685 TGAGACTTGGACACGTCAGAAG 59.965 50.000 10.89 3.54 32.67 2.85
452 788 2.293677 GAGACTTGGACACGTCAGAAGA 59.706 50.000 10.89 0.00 32.67 2.87
453 789 2.693591 AGACTTGGACACGTCAGAAGAA 59.306 45.455 10.89 0.00 32.67 2.52
454 790 3.322254 AGACTTGGACACGTCAGAAGAAT 59.678 43.478 10.89 1.91 32.67 2.40
487 823 1.129251 GCAATCAGACATGGACACGTG 59.871 52.381 15.48 15.48 39.55 4.49
495 831 2.811431 GACATGGACACGTGGATCAAAA 59.189 45.455 21.57 0.00 37.94 2.44
496 832 2.813754 ACATGGACACGTGGATCAAAAG 59.186 45.455 21.57 10.95 37.94 2.27
497 833 2.920724 TGGACACGTGGATCAAAAGA 57.079 45.000 21.57 0.00 0.00 2.52
498 834 3.201353 TGGACACGTGGATCAAAAGAA 57.799 42.857 21.57 0.00 0.00 2.52
561 904 2.108157 GCCGACCACCGCATATCA 59.892 61.111 0.00 0.00 36.84 2.15
577 920 2.321263 ATCACCTGGCCTGCATCTCG 62.321 60.000 3.32 0.00 0.00 4.04
578 921 4.479993 ACCTGGCCTGCATCTCGC 62.480 66.667 3.32 0.00 42.89 5.03
588 931 1.427020 GCATCTCGCACAGAAAGGC 59.573 57.895 0.00 0.00 41.79 4.35
602 945 1.398390 GAAAGGCGCATCCTACTTGTG 59.602 52.381 10.83 0.00 46.94 3.33
607 950 1.935933 CGCATCCTACTTGTGGTACC 58.064 55.000 4.43 4.43 0.00 3.34
608 951 1.472728 CGCATCCTACTTGTGGTACCC 60.473 57.143 10.07 1.05 0.00 3.69
609 952 1.557832 GCATCCTACTTGTGGTACCCA 59.442 52.381 10.07 4.06 0.00 4.51
617 961 6.070424 TCCTACTTGTGGTACCCAATTTCTAG 60.070 42.308 10.07 8.93 34.18 2.43
626 970 6.377146 TGGTACCCAATTTCTAGCATTTCTTC 59.623 38.462 10.07 0.00 0.00 2.87
655 1002 0.997196 GTAACGTCGGCATTGGACTC 59.003 55.000 0.00 0.00 32.24 3.36
694 1041 1.064389 CCCAATCTCCTTCCTGAACCC 60.064 57.143 0.00 0.00 0.00 4.11
883 2541 0.877071 CCTATAAATGCCGCCTGCTG 59.123 55.000 0.00 0.00 42.00 4.41
991 2665 2.546778 TCGTGTTTGTTGGTGAGAGAC 58.453 47.619 0.00 0.00 0.00 3.36
1066 2755 4.462280 CCCGCACCGAGGTAACCC 62.462 72.222 0.00 0.00 37.17 4.11
1104 2797 0.804364 GCCACTTCATCGTGCATTCA 59.196 50.000 0.00 0.00 33.60 2.57
1135 2853 5.182760 GTGATCTGAAATGCTCTCTTGGTTT 59.817 40.000 0.00 0.00 0.00 3.27
1136 2854 5.182570 TGATCTGAAATGCTCTCTTGGTTTG 59.817 40.000 0.00 0.00 0.00 2.93
1137 2855 3.822735 TCTGAAATGCTCTCTTGGTTTGG 59.177 43.478 0.00 0.00 0.00 3.28
1138 2856 2.297033 TGAAATGCTCTCTTGGTTTGGC 59.703 45.455 0.00 0.00 0.00 4.52
1139 2857 2.299326 AATGCTCTCTTGGTTTGGCT 57.701 45.000 0.00 0.00 0.00 4.75
1140 2858 1.542492 ATGCTCTCTTGGTTTGGCTG 58.458 50.000 0.00 0.00 0.00 4.85
1141 2859 1.174712 TGCTCTCTTGGTTTGGCTGC 61.175 55.000 0.00 0.00 0.00 5.25
1170 2888 4.802051 CCGGGCAGATGGTGGGTG 62.802 72.222 0.00 0.00 0.00 4.61
1172 2890 4.365111 GGGCAGATGGTGGGTGCA 62.365 66.667 0.00 0.00 39.05 4.57
1223 2941 3.249189 ACCAAGCAGAAGGCCGGA 61.249 61.111 5.05 0.00 46.50 5.14
1229 2947 2.650116 GCAGAAGGCCGGAGAGACA 61.650 63.158 5.05 0.00 36.11 3.41
1580 7082 4.284550 AACACGCTGGGCATGGGT 62.285 61.111 0.00 0.00 0.00 4.51
1589 7091 1.305213 GGGCATGGGTGGTGACAAT 60.305 57.895 0.00 0.00 46.06 2.71
1590 7092 1.606885 GGGCATGGGTGGTGACAATG 61.607 60.000 0.00 0.00 46.06 2.82
1624 7132 2.093447 CCACCACCAGGAATCACTAGAC 60.093 54.545 0.00 0.00 38.69 2.59
1665 7173 6.969828 ATTTGATCTCCTTTAGTCGTGTTC 57.030 37.500 0.00 0.00 0.00 3.18
1666 7174 4.092771 TGATCTCCTTTAGTCGTGTTCG 57.907 45.455 0.00 0.00 38.55 3.95
1667 7175 3.119602 TGATCTCCTTTAGTCGTGTTCGG 60.120 47.826 0.00 0.00 37.69 4.30
1668 7176 1.068055 TCTCCTTTAGTCGTGTTCGGC 60.068 52.381 0.00 0.00 42.44 5.54
1669 7177 0.037975 TCCTTTAGTCGTGTTCGGCC 60.038 55.000 0.00 0.00 43.20 6.13
1670 7178 1.349259 CCTTTAGTCGTGTTCGGCCG 61.349 60.000 22.12 22.12 43.20 6.13
1671 7179 0.665369 CTTTAGTCGTGTTCGGCCGT 60.665 55.000 27.15 5.29 43.20 5.68
1672 7180 0.249405 TTTAGTCGTGTTCGGCCGTT 60.249 50.000 27.15 4.39 43.20 4.44
1673 7181 0.664166 TTAGTCGTGTTCGGCCGTTC 60.664 55.000 27.15 19.14 43.20 3.95
1695 7203 1.241165 TCGTTCACGAGCCTTCTACA 58.759 50.000 0.00 0.00 44.22 2.74
1696 7204 1.199327 TCGTTCACGAGCCTTCTACAG 59.801 52.381 0.00 0.00 44.22 2.74
1697 7205 1.068472 CGTTCACGAGCCTTCTACAGT 60.068 52.381 0.00 0.00 43.02 3.55
1698 7206 2.161012 CGTTCACGAGCCTTCTACAGTA 59.839 50.000 0.00 0.00 43.02 2.74
1699 7207 3.500014 GTTCACGAGCCTTCTACAGTAC 58.500 50.000 0.00 0.00 0.00 2.73
1700 7208 2.786777 TCACGAGCCTTCTACAGTACA 58.213 47.619 0.00 0.00 0.00 2.90
1701 7209 3.353557 TCACGAGCCTTCTACAGTACAT 58.646 45.455 0.00 0.00 0.00 2.29
1702 7210 4.520179 TCACGAGCCTTCTACAGTACATA 58.480 43.478 0.00 0.00 0.00 2.29
1703 7211 5.131067 TCACGAGCCTTCTACAGTACATAT 58.869 41.667 0.00 0.00 0.00 1.78
1704 7212 5.593095 TCACGAGCCTTCTACAGTACATATT 59.407 40.000 0.00 0.00 0.00 1.28
1705 7213 6.096423 TCACGAGCCTTCTACAGTACATATTT 59.904 38.462 0.00 0.00 0.00 1.40
1706 7214 6.757010 CACGAGCCTTCTACAGTACATATTTT 59.243 38.462 0.00 0.00 0.00 1.82
1707 7215 6.757010 ACGAGCCTTCTACAGTACATATTTTG 59.243 38.462 0.00 0.00 0.00 2.44
1732 7240 5.418310 TGTTTCCACTCTTTCGTGATTTC 57.582 39.130 0.00 0.00 37.06 2.17
1734 7242 2.683968 TCCACTCTTTCGTGATTTCCG 58.316 47.619 0.00 0.00 37.06 4.30
1735 7243 1.128692 CCACTCTTTCGTGATTTCCGC 59.871 52.381 0.00 0.00 37.06 5.54
1736 7244 2.069273 CACTCTTTCGTGATTTCCGCT 58.931 47.619 0.00 0.00 37.06 5.52
1737 7245 2.092838 CACTCTTTCGTGATTTCCGCTC 59.907 50.000 0.00 0.00 37.06 5.03
1738 7246 2.288825 ACTCTTTCGTGATTTCCGCTCA 60.289 45.455 0.00 0.00 0.00 4.26
1739 7247 2.932614 CTCTTTCGTGATTTCCGCTCAT 59.067 45.455 0.00 0.00 0.00 2.90
1740 7248 3.334691 TCTTTCGTGATTTCCGCTCATT 58.665 40.909 0.00 0.00 0.00 2.57
1741 7249 3.751175 TCTTTCGTGATTTCCGCTCATTT 59.249 39.130 0.00 0.00 0.00 2.32
1742 7250 4.932799 TCTTTCGTGATTTCCGCTCATTTA 59.067 37.500 0.00 0.00 0.00 1.40
1743 7251 4.857871 TTCGTGATTTCCGCTCATTTAG 57.142 40.909 0.00 0.00 0.00 1.85
1775 7283 0.520404 GCTATACTAGCGCCGCACTA 59.480 55.000 13.36 0.00 42.62 2.74
1798 7306 2.000429 ATTAGTCGGTTTTAGCGCGT 58.000 45.000 8.43 0.00 39.21 6.01
1841 7349 4.062656 GGGCCCGCAAAAATCGCA 62.063 61.111 5.69 0.00 0.00 5.10
1964 7472 0.618968 ACTTCCTCTCCCGCTTCCAT 60.619 55.000 0.00 0.00 0.00 3.41
2050 8965 2.653890 CAACGCACAATGAACTTCAGG 58.346 47.619 0.00 0.00 0.00 3.86
2293 9215 1.135972 CGCTGTATTTTTGCGCTCTGT 60.136 47.619 9.73 0.00 43.08 3.41
2442 9366 5.770162 AGATGCTTTTAGTGTAAGTTTGCCT 59.230 36.000 0.00 0.00 0.00 4.75
2457 9381 4.080863 AGTTTGCCTCCGATTTGATCTACT 60.081 41.667 0.00 0.00 0.00 2.57
2465 9389 3.036633 CGATTTGATCTACTCGTGTCCG 58.963 50.000 8.38 0.00 0.00 4.79
2474 9398 0.879765 ACTCGTGTCCGGTTCTGTAG 59.120 55.000 0.00 0.00 33.95 2.74
2510 9438 2.262915 CTTCACTCGAAGGCGGCT 59.737 61.111 5.25 5.25 44.25 5.52
2519 9447 2.540101 CTCGAAGGCGGCTATAAAGTTG 59.460 50.000 13.71 0.00 38.28 3.16
2522 9450 3.244579 CGAAGGCGGCTATAAAGTTGTAC 59.755 47.826 13.71 0.00 0.00 2.90
2548 9476 5.697178 TGATCGAATTTCTTTTGTCACGGTA 59.303 36.000 0.00 0.00 0.00 4.02
2586 9514 0.881159 CGTTGTTGCCGGACCAACTA 60.881 55.000 20.96 13.58 44.12 2.24
2613 9541 2.826337 TCATATGGTGAGGCTCGCT 58.174 52.632 25.73 11.18 31.80 4.93
2614 9542 1.995376 TCATATGGTGAGGCTCGCTA 58.005 50.000 25.73 21.45 31.80 4.26
2615 9543 1.613925 TCATATGGTGAGGCTCGCTAC 59.386 52.381 25.73 11.17 31.80 3.58
2616 9544 0.598562 ATATGGTGAGGCTCGCTACG 59.401 55.000 25.73 0.00 0.00 3.51
2617 9545 1.452953 TATGGTGAGGCTCGCTACGG 61.453 60.000 25.73 0.00 0.00 4.02
2618 9546 3.138798 GGTGAGGCTCGCTACGGA 61.139 66.667 25.73 0.00 0.00 4.69
2619 9547 2.409651 GTGAGGCTCGCTACGGAG 59.590 66.667 20.43 0.00 37.11 4.63
2620 9548 2.829003 TGAGGCTCGCTACGGAGG 60.829 66.667 10.42 0.00 34.56 4.30
2621 9549 2.516460 GAGGCTCGCTACGGAGGA 60.516 66.667 0.00 0.00 34.56 3.71
2622 9550 2.044252 AGGCTCGCTACGGAGGAA 60.044 61.111 0.00 0.00 34.56 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.699703 GTAGTTTTTGTTGGAATATTAGGCAAA 57.300 29.630 0.00 0.00 0.00 3.68
6 7 9.084533 AGTAGTTTTTGTTGGAATATTAGGCAA 57.915 29.630 0.00 0.00 0.00 4.52
7 8 8.644374 AGTAGTTTTTGTTGGAATATTAGGCA 57.356 30.769 0.00 0.00 0.00 4.75
8 9 8.188799 GGAGTAGTTTTTGTTGGAATATTAGGC 58.811 37.037 0.00 0.00 0.00 3.93
9 10 9.238368 TGGAGTAGTTTTTGTTGGAATATTAGG 57.762 33.333 0.00 0.00 0.00 2.69
12 13 8.531146 CCATGGAGTAGTTTTTGTTGGAATATT 58.469 33.333 5.56 0.00 0.00 1.28
13 14 7.673926 ACCATGGAGTAGTTTTTGTTGGAATAT 59.326 33.333 21.47 0.00 0.00 1.28
14 15 7.007723 ACCATGGAGTAGTTTTTGTTGGAATA 58.992 34.615 21.47 0.00 0.00 1.75
15 16 5.838521 ACCATGGAGTAGTTTTTGTTGGAAT 59.161 36.000 21.47 0.00 0.00 3.01
16 17 5.205056 ACCATGGAGTAGTTTTTGTTGGAA 58.795 37.500 21.47 0.00 0.00 3.53
17 18 4.798882 ACCATGGAGTAGTTTTTGTTGGA 58.201 39.130 21.47 0.00 0.00 3.53
18 19 5.529581 AACCATGGAGTAGTTTTTGTTGG 57.470 39.130 21.47 0.00 0.00 3.77
19 20 8.934507 TTTAAACCATGGAGTAGTTTTTGTTG 57.065 30.769 21.47 0.00 35.45 3.33
20 21 9.594478 CTTTTAAACCATGGAGTAGTTTTTGTT 57.406 29.630 21.47 0.00 35.45 2.83
21 22 7.709182 GCTTTTAAACCATGGAGTAGTTTTTGT 59.291 33.333 21.47 0.00 35.45 2.83
22 23 7.170828 GGCTTTTAAACCATGGAGTAGTTTTTG 59.829 37.037 21.47 0.43 35.45 2.44
23 24 7.147637 TGGCTTTTAAACCATGGAGTAGTTTTT 60.148 33.333 21.47 9.11 35.45 1.94
33 34 9.696917 GATATTCTTATGGCTTTTAAACCATGG 57.303 33.333 11.19 11.19 46.20 3.66
88 89 5.704515 GGGAGATGAGATTTGGTGTCATATG 59.295 44.000 0.00 0.00 40.61 1.78
97 98 4.826183 GGAAGAATGGGAGATGAGATTTGG 59.174 45.833 0.00 0.00 0.00 3.28
105 106 2.507058 TGAGTGGGAAGAATGGGAGATG 59.493 50.000 0.00 0.00 0.00 2.90
127 128 2.569059 AGAATCATGGCATTGTCGAGG 58.431 47.619 0.00 0.00 0.00 4.63
134 142 1.477553 ACCGCAAGAATCATGGCATT 58.522 45.000 0.00 0.00 43.02 3.56
215 225 1.811558 GCTGGCGCATATTGAAGGAGA 60.812 52.381 10.83 0.00 35.78 3.71
225 235 0.953471 ACACGAAAAGCTGGCGCATA 60.953 50.000 10.83 0.00 39.10 3.14
259 269 2.159282 ACCTAGAAAGTGTCGTATGGCG 60.159 50.000 0.00 0.00 43.01 5.69
263 273 4.880120 TCGATGACCTAGAAAGTGTCGTAT 59.120 41.667 0.00 0.00 0.00 3.06
267 277 3.735514 GCCTCGATGACCTAGAAAGTGTC 60.736 52.174 0.00 0.00 0.00 3.67
270 280 2.166664 GTGCCTCGATGACCTAGAAAGT 59.833 50.000 0.00 0.00 0.00 2.66
279 289 0.798776 CCAAGTTGTGCCTCGATGAC 59.201 55.000 1.45 0.00 0.00 3.06
285 295 4.301628 CTTGATTTTCCAAGTTGTGCCTC 58.698 43.478 1.45 0.00 38.87 4.70
297 307 5.125578 GGGAATGTGGTCTACTTGATTTTCC 59.874 44.000 0.00 0.00 0.00 3.13
308 318 3.522759 TGTAAGTGGGGAATGTGGTCTA 58.477 45.455 0.00 0.00 0.00 2.59
313 323 5.720371 TGATTTTGTAAGTGGGGAATGTG 57.280 39.130 0.00 0.00 0.00 3.21
315 512 7.201821 GGAGTATGATTTTGTAAGTGGGGAATG 60.202 40.741 0.00 0.00 0.00 2.67
316 513 6.833933 GGAGTATGATTTTGTAAGTGGGGAAT 59.166 38.462 0.00 0.00 0.00 3.01
321 518 5.823045 GGAGGGAGTATGATTTTGTAAGTGG 59.177 44.000 0.00 0.00 0.00 4.00
322 519 5.523916 CGGAGGGAGTATGATTTTGTAAGTG 59.476 44.000 0.00 0.00 0.00 3.16
323 520 5.424252 TCGGAGGGAGTATGATTTTGTAAGT 59.576 40.000 0.00 0.00 0.00 2.24
338 536 2.169352 AGATTGTGTCAATCGGAGGGAG 59.831 50.000 14.14 0.00 0.00 4.30
339 537 2.168521 GAGATTGTGTCAATCGGAGGGA 59.831 50.000 14.14 0.00 0.00 4.20
374 582 8.417884 GGTGTTTAGTAGAGCTGATAGAAAGAT 58.582 37.037 0.00 0.00 0.00 2.40
375 583 7.147880 GGGTGTTTAGTAGAGCTGATAGAAAGA 60.148 40.741 0.00 0.00 0.00 2.52
380 716 5.593010 GTGGGTGTTTAGTAGAGCTGATAG 58.407 45.833 0.00 0.00 0.00 2.08
392 728 9.716507 CATATTTTTCTATTCGTGGGTGTTTAG 57.283 33.333 0.00 0.00 0.00 1.85
403 739 8.766493 TGCACGATTTCATATTTTTCTATTCG 57.234 30.769 0.00 0.00 0.00 3.34
410 746 8.246180 AGTCTCATTGCACGATTTCATATTTTT 58.754 29.630 0.00 0.00 0.00 1.94
412 748 7.325660 AGTCTCATTGCACGATTTCATATTT 57.674 32.000 0.00 0.00 0.00 1.40
414 750 6.238566 CCAAGTCTCATTGCACGATTTCATAT 60.239 38.462 0.00 0.00 0.00 1.78
415 751 5.065090 CCAAGTCTCATTGCACGATTTCATA 59.935 40.000 0.00 0.00 0.00 2.15
416 752 4.142534 CCAAGTCTCATTGCACGATTTCAT 60.143 41.667 0.00 0.00 0.00 2.57
417 753 3.189080 CCAAGTCTCATTGCACGATTTCA 59.811 43.478 0.00 0.00 0.00 2.69
418 754 3.436704 TCCAAGTCTCATTGCACGATTTC 59.563 43.478 0.00 0.00 0.00 2.17
419 755 3.189287 GTCCAAGTCTCATTGCACGATTT 59.811 43.478 0.00 0.00 0.00 2.17
420 756 2.744202 GTCCAAGTCTCATTGCACGATT 59.256 45.455 0.00 0.00 0.00 3.34
421 757 2.289631 TGTCCAAGTCTCATTGCACGAT 60.290 45.455 0.00 0.00 0.00 3.73
422 758 1.069978 TGTCCAAGTCTCATTGCACGA 59.930 47.619 0.00 0.00 0.00 4.35
423 759 1.195448 GTGTCCAAGTCTCATTGCACG 59.805 52.381 0.00 0.00 0.00 5.34
424 760 1.195448 CGTGTCCAAGTCTCATTGCAC 59.805 52.381 0.00 0.00 0.00 4.57
425 761 1.202639 ACGTGTCCAAGTCTCATTGCA 60.203 47.619 0.00 0.00 0.00 4.08
426 762 1.461127 GACGTGTCCAAGTCTCATTGC 59.539 52.381 0.00 0.00 36.97 3.56
427 763 2.733552 CTGACGTGTCCAAGTCTCATTG 59.266 50.000 13.18 0.00 39.89 2.82
428 764 2.628178 TCTGACGTGTCCAAGTCTCATT 59.372 45.455 13.18 0.00 39.89 2.57
429 765 2.239400 TCTGACGTGTCCAAGTCTCAT 58.761 47.619 13.18 0.00 39.89 2.90
430 766 1.687563 TCTGACGTGTCCAAGTCTCA 58.312 50.000 13.18 0.00 39.89 3.27
431 767 2.293677 TCTTCTGACGTGTCCAAGTCTC 59.706 50.000 13.18 0.00 39.89 3.36
432 768 2.307768 TCTTCTGACGTGTCCAAGTCT 58.692 47.619 13.18 0.00 39.89 3.24
433 769 2.795175 TCTTCTGACGTGTCCAAGTC 57.205 50.000 0.00 6.44 39.68 3.01
434 770 3.753294 ATTCTTCTGACGTGTCCAAGT 57.247 42.857 0.00 0.00 0.00 3.16
435 771 7.203218 TCATATATTCTTCTGACGTGTCCAAG 58.797 38.462 0.00 0.66 0.00 3.61
436 772 7.107639 TCATATATTCTTCTGACGTGTCCAA 57.892 36.000 0.00 0.00 0.00 3.53
437 773 6.709018 TCATATATTCTTCTGACGTGTCCA 57.291 37.500 0.00 0.00 0.00 4.02
438 774 8.594881 ATTTCATATATTCTTCTGACGTGTCC 57.405 34.615 0.00 0.00 0.00 4.02
439 775 9.469807 AGATTTCATATATTCTTCTGACGTGTC 57.530 33.333 0.00 0.00 0.00 3.67
440 776 9.823647 AAGATTTCATATATTCTTCTGACGTGT 57.176 29.630 0.00 0.00 0.00 4.49
442 778 8.768955 GCAAGATTTCATATATTCTTCTGACGT 58.231 33.333 0.00 0.00 0.00 4.34
443 779 8.768019 TGCAAGATTTCATATATTCTTCTGACG 58.232 33.333 0.00 0.00 0.00 4.35
454 790 8.789762 CCATGTCTGATTGCAAGATTTCATATA 58.210 33.333 4.94 0.00 0.00 0.86
472 808 1.066929 TGATCCACGTGTCCATGTCTG 60.067 52.381 15.65 0.00 0.00 3.51
477 813 3.417069 TCTTTTGATCCACGTGTCCAT 57.583 42.857 15.65 3.07 0.00 3.41
543 886 2.665185 GATATGCGGTGGTCGGCC 60.665 66.667 0.00 0.00 38.80 6.13
561 904 4.479993 GCGAGATGCAGGCCAGGT 62.480 66.667 5.01 0.00 45.45 4.00
577 920 2.486966 GGATGCGCCTTTCTGTGC 59.513 61.111 4.18 0.00 42.05 4.57
586 929 0.177141 TACCACAAGTAGGATGCGCC 59.823 55.000 4.18 0.00 0.00 6.53
587 930 1.287425 GTACCACAAGTAGGATGCGC 58.713 55.000 0.00 0.00 0.00 6.09
588 931 1.935933 GGTACCACAAGTAGGATGCG 58.064 55.000 7.15 0.00 0.00 4.73
607 950 4.985413 TGCGAAGAAATGCTAGAAATTGG 58.015 39.130 0.00 0.00 0.00 3.16
608 951 5.394613 CGATGCGAAGAAATGCTAGAAATTG 59.605 40.000 0.00 0.00 0.00 2.32
609 952 5.065218 ACGATGCGAAGAAATGCTAGAAATT 59.935 36.000 0.00 0.00 0.00 1.82
617 961 1.394917 ACTCACGATGCGAAGAAATGC 59.605 47.619 0.00 0.00 0.00 3.56
694 1041 3.869246 AGACCAACACAAGTGTAAAGACG 59.131 43.478 6.24 0.00 44.13 4.18
883 2541 3.858503 GCTTGTGTTGGAAAGGAGATTGC 60.859 47.826 0.00 0.00 0.00 3.56
991 2665 2.363683 GTTGGAGGCCATCTTCTCTTG 58.636 52.381 5.01 0.00 31.53 3.02
1085 2778 0.804364 TGAATGCACGATGAAGTGGC 59.196 50.000 0.00 0.00 42.09 5.01
1138 2856 2.507992 CGGTCTTCTCCTGCGCAG 60.508 66.667 30.52 30.52 0.00 5.18
1139 2857 4.069232 CCGGTCTTCTCCTGCGCA 62.069 66.667 10.98 10.98 0.00 6.09
1140 2858 4.821589 CCCGGTCTTCTCCTGCGC 62.822 72.222 0.00 0.00 0.00 6.09
1141 2859 4.821589 GCCCGGTCTTCTCCTGCG 62.822 72.222 0.00 0.00 0.00 5.18
1169 2887 2.192861 CGCCTTGTCCTTGGTTGCA 61.193 57.895 0.00 0.00 0.00 4.08
1170 2888 2.644992 CGCCTTGTCCTTGGTTGC 59.355 61.111 0.00 0.00 0.00 4.17
1172 2890 2.115266 CCCGCCTTGTCCTTGGTT 59.885 61.111 0.00 0.00 0.00 3.67
1234 2952 2.677875 CCTTCTGCTTGGTGGCCC 60.678 66.667 0.00 0.00 0.00 5.80
1589 7091 2.194597 GTGGTGTCCTTGGTGGCA 59.805 61.111 0.00 0.00 35.26 4.92
1590 7092 2.597510 GGTGGTGTCCTTGGTGGC 60.598 66.667 0.00 0.00 35.26 5.01
1647 7155 2.416972 GCCGAACACGACTAAAGGAGAT 60.417 50.000 0.00 0.00 0.00 2.75
1649 7157 1.347320 GCCGAACACGACTAAAGGAG 58.653 55.000 0.00 0.00 0.00 3.69
1666 7174 3.408851 GTGAACGACCGAACGGCC 61.409 66.667 13.32 0.81 39.32 6.13
1667 7175 3.759828 CGTGAACGACCGAACGGC 61.760 66.667 13.32 5.51 43.02 5.68
1668 7176 2.051076 TCGTGAACGACCGAACGG 60.051 61.111 11.83 11.83 44.22 4.44
1669 7177 2.704193 GCTCGTGAACGACCGAACG 61.704 63.158 0.50 3.88 44.22 3.95
1670 7178 2.370393 GGCTCGTGAACGACCGAAC 61.370 63.158 0.50 0.00 44.22 3.95
1671 7179 2.049802 GGCTCGTGAACGACCGAA 60.050 61.111 0.50 0.00 44.22 4.30
1672 7180 2.467946 GAAGGCTCGTGAACGACCGA 62.468 60.000 0.50 0.00 44.22 4.69
1673 7181 2.049433 AAGGCTCGTGAACGACCG 60.049 61.111 0.50 0.00 44.22 4.79
1695 7203 9.959721 AGAGTGGAAACATACAAAATATGTACT 57.040 29.630 0.20 1.02 46.90 2.73
1699 7207 9.277565 CGAAAGAGTGGAAACATACAAAATATG 57.722 33.333 0.00 0.00 46.14 1.78
1700 7208 9.010029 ACGAAAGAGTGGAAACATACAAAATAT 57.990 29.630 0.00 0.00 46.14 1.28
1701 7209 8.286800 CACGAAAGAGTGGAAACATACAAAATA 58.713 33.333 0.00 0.00 46.14 1.40
1702 7210 7.012894 TCACGAAAGAGTGGAAACATACAAAAT 59.987 33.333 0.00 0.00 46.14 1.82
1703 7211 6.316640 TCACGAAAGAGTGGAAACATACAAAA 59.683 34.615 0.00 0.00 46.14 2.44
1704 7212 5.818336 TCACGAAAGAGTGGAAACATACAAA 59.182 36.000 0.00 0.00 46.14 2.83
1705 7213 5.361427 TCACGAAAGAGTGGAAACATACAA 58.639 37.500 0.00 0.00 46.14 2.41
1706 7214 4.951254 TCACGAAAGAGTGGAAACATACA 58.049 39.130 0.00 0.00 46.14 2.29
1707 7215 6.481954 AATCACGAAAGAGTGGAAACATAC 57.518 37.500 0.00 0.00 46.14 2.39
1732 7240 1.398390 GCTGTTGGACTAAATGAGCGG 59.602 52.381 0.00 0.00 0.00 5.52
1734 7242 1.398390 CGGCTGTTGGACTAAATGAGC 59.602 52.381 0.00 0.00 0.00 4.26
1735 7243 1.398390 GCGGCTGTTGGACTAAATGAG 59.602 52.381 0.00 0.00 0.00 2.90
1736 7244 1.448985 GCGGCTGTTGGACTAAATGA 58.551 50.000 0.00 0.00 0.00 2.57
1737 7245 0.096976 CGCGGCTGTTGGACTAAATG 59.903 55.000 0.00 0.00 0.00 2.32
1738 7246 1.644786 GCGCGGCTGTTGGACTAAAT 61.645 55.000 8.83 0.00 0.00 1.40
1739 7247 2.322081 GCGCGGCTGTTGGACTAAA 61.322 57.895 8.83 0.00 0.00 1.85
1740 7248 1.879737 TAGCGCGGCTGTTGGACTAA 61.880 55.000 8.83 0.00 40.10 2.24
1741 7249 1.672854 ATAGCGCGGCTGTTGGACTA 61.673 55.000 8.83 0.00 40.10 2.59
1742 7250 1.672854 TATAGCGCGGCTGTTGGACT 61.673 55.000 8.83 0.00 40.10 3.85
1743 7251 1.227147 TATAGCGCGGCTGTTGGAC 60.227 57.895 8.83 0.00 40.10 4.02
1775 7283 3.423907 CGCGCTAAAACCGACTAATTTGT 60.424 43.478 5.56 0.00 0.00 2.83
1828 7336 3.522987 CGCGTGCGATTTTTGCGG 61.523 61.111 8.89 0.00 44.65 5.69
1841 7349 2.305127 AACTCGTTTTAGCGCGCGT 61.305 52.632 32.35 20.00 0.00 6.01
2005 7513 2.476619 GACGCCGAATGACAATGATAGG 59.523 50.000 0.00 0.00 0.00 2.57
2008 7516 1.299541 GGACGCCGAATGACAATGAT 58.700 50.000 0.00 0.00 0.00 2.45
2009 7517 0.742990 GGGACGCCGAATGACAATGA 60.743 55.000 0.00 0.00 0.00 2.57
2011 7519 4.218722 GGGACGCCGAATGACAAT 57.781 55.556 0.00 0.00 0.00 2.71
2050 8965 4.815308 CCACCACTCTTCAATCAGATCATC 59.185 45.833 0.00 0.00 0.00 2.92
2410 9334 4.718961 ACACTAAAAGCATCTCCAACAGT 58.281 39.130 0.00 0.00 0.00 3.55
2442 9366 3.066342 GGACACGAGTAGATCAAATCGGA 59.934 47.826 15.07 0.00 39.42 4.55
2457 9381 0.594602 CACTACAGAACCGGACACGA 59.405 55.000 9.46 0.00 44.60 4.35
2465 9389 8.204836 ACATGGATTATAACTCACTACAGAACC 58.795 37.037 0.00 0.00 0.00 3.62
2474 9398 9.250624 GAGTGAAGTACATGGATTATAACTCAC 57.749 37.037 0.00 0.00 31.67 3.51
2510 9438 9.577110 AGAAATTCGATCACGTACAACTTTATA 57.423 29.630 0.00 0.00 40.69 0.98
2519 9447 6.515340 GTGACAAAAGAAATTCGATCACGTAC 59.485 38.462 0.00 0.00 40.69 3.67
2522 9450 5.957976 GTGACAAAAGAAATTCGATCACG 57.042 39.130 0.00 0.00 41.26 4.35
2566 9494 2.124653 TTGGTCCGGCAACAACGT 60.125 55.556 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.