Multiple sequence alignment - TraesCS1B01G381200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G381200 chr1B 100.000 3224 0 0 1 3224 614182204 614185427 0.000000e+00 5954.0
1 TraesCS1B01G381200 chr1B 83.432 507 46 20 1689 2184 614292712 614293191 1.370000e-118 436.0
2 TraesCS1B01G381200 chr1B 85.488 441 31 10 1501 1908 614278380 614278820 2.300000e-116 429.0
3 TraesCS1B01G381200 chr1B 82.540 252 33 11 1564 1810 447564085 447563840 9.060000e-51 211.0
4 TraesCS1B01G381200 chr1B 76.170 470 73 23 1039 1491 614278022 614278469 9.060000e-51 211.0
5 TraesCS1B01G381200 chr1B 85.417 144 7 5 1935 2064 614278811 614278954 1.560000e-28 137.0
6 TraesCS1B01G381200 chr1B 83.969 131 21 0 1468 1598 614183605 614183735 3.380000e-25 126.0
7 TraesCS1B01G381200 chr1B 83.969 131 21 0 1402 1532 614183671 614183801 3.380000e-25 126.0
8 TraesCS1B01G381200 chr1B 87.342 79 7 3 2342 2418 83026374 83026297 1.590000e-13 87.9
9 TraesCS1B01G381200 chr1B 88.000 75 7 2 2346 2419 241942476 241942549 1.590000e-13 87.9
10 TraesCS1B01G381200 chr7B 96.201 895 15 3 2348 3224 730140503 730141396 0.000000e+00 1447.0
11 TraesCS1B01G381200 chr7B 87.654 81 9 1 2346 2426 708135071 708134992 3.420000e-15 93.5
12 TraesCS1B01G381200 chr7B 88.462 78 6 3 2342 2418 64183132 64183207 1.230000e-14 91.6
13 TraesCS1B01G381200 chr1A 88.594 868 69 16 893 1737 544176383 544177243 0.000000e+00 1027.0
14 TraesCS1B01G381200 chr1A 84.289 802 96 22 1402 2187 544176941 544177728 0.000000e+00 756.0
15 TraesCS1B01G381200 chr1A 88.218 348 35 6 1564 1908 544194713 544195057 8.320000e-111 411.0
16 TraesCS1B01G381200 chr1A 83.573 347 28 15 511 843 544175965 544176296 6.760000e-77 298.0
17 TraesCS1B01G381200 chr1A 78.614 505 44 35 1526 1989 544318887 544319368 3.170000e-70 276.0
18 TraesCS1B01G381200 chr1A 89.899 198 20 0 1435 1632 544176908 544177105 4.130000e-64 255.0
19 TraesCS1B01G381200 chr1A 77.677 439 72 18 1214 1646 544198227 544198645 8.930000e-61 244.0
20 TraesCS1B01G381200 chr1A 90.000 190 13 4 1746 1935 544293604 544293787 1.160000e-59 241.0
21 TraesCS1B01G381200 chr1A 84.190 253 28 12 1564 1810 430343145 430342899 5.380000e-58 235.0
22 TraesCS1B01G381200 chr1A 77.064 436 74 23 1409 1837 544198387 544198803 9.000000e-56 228.0
23 TraesCS1B01G381200 chr1A 74.201 438 72 30 1034 1454 544194322 544194735 9.320000e-31 145.0
24 TraesCS1B01G381200 chr1A 87.671 73 7 2 3154 3224 97264922 97264994 2.060000e-12 84.2
25 TraesCS1B01G381200 chr1D 88.201 856 84 11 888 1737 448282907 448283751 0.000000e+00 1005.0
26 TraesCS1B01G381200 chr1D 91.019 579 25 10 2429 2992 436606031 436605465 0.000000e+00 756.0
27 TraesCS1B01G381200 chr1D 83.756 788 94 21 1376 2148 448283423 448284191 0.000000e+00 715.0
28 TraesCS1B01G381200 chr1D 82.030 729 50 37 1489 2172 448424324 448425016 2.190000e-151 545.0
29 TraesCS1B01G381200 chr1D 88.208 424 42 8 1489 1908 448376967 448377386 1.730000e-137 499.0
30 TraesCS1B01G381200 chr1D 89.552 268 26 2 1489 1755 448389127 448389393 3.980000e-89 339.0
31 TraesCS1B01G381200 chr1D 91.071 224 20 0 1409 1632 448283390 448283613 1.450000e-78 303.0
32 TraesCS1B01G381200 chr1D 82.562 281 24 14 1217 1491 448376807 448377068 1.160000e-54 224.0
33 TraesCS1B01G381200 chr1D 82.937 252 33 10 1564 1810 332703526 332703280 5.420000e-53 219.0
34 TraesCS1B01G381200 chr1D 76.605 483 57 27 1039 1491 448388772 448389228 7.010000e-52 215.0
35 TraesCS1B01G381200 chr1D 77.509 289 31 14 1214 1491 448424160 448424425 3.350000e-30 143.0
36 TraesCS1B01G381200 chr1D 92.188 64 5 0 3161 3224 12546910 12546973 1.230000e-14 91.6
37 TraesCS1B01G381200 chr1D 89.041 73 8 0 1038 1110 448423975 448424047 1.230000e-14 91.6
38 TraesCS1B01G381200 chr3D 89.696 757 52 13 2429 3172 91975704 91976447 0.000000e+00 942.0
39 TraesCS1B01G381200 chr3D 88.522 758 52 9 2429 3172 472313712 472314448 0.000000e+00 885.0
40 TraesCS1B01G381200 chr4D 88.639 757 55 12 2430 3172 8130338 8131077 0.000000e+00 893.0
41 TraesCS1B01G381200 chr2A 91.146 576 25 9 2429 2989 735697264 735697828 0.000000e+00 758.0
42 TraesCS1B01G381200 chr6D 88.852 610 43 10 2429 3024 23615984 23616582 0.000000e+00 726.0
43 TraesCS1B01G381200 chr6D 85.057 87 12 1 2332 2418 418170629 418170714 1.590000e-13 87.9
44 TraesCS1B01G381200 chr6A 91.370 533 37 4 2644 3175 566691269 566690745 0.000000e+00 721.0
45 TraesCS1B01G381200 chr6A 87.533 377 23 9 2428 2786 566691622 566691252 6.440000e-112 414.0
46 TraesCS1B01G381200 chr6A 74.278 381 61 19 2486 2831 56247762 56247384 3.380000e-25 126.0
47 TraesCS1B01G381200 chr7D 90.748 508 35 5 2670 3175 524444849 524444352 0.000000e+00 667.0
48 TraesCS1B01G381200 chr7D 93.333 60 3 1 3165 3224 22260872 22260930 1.590000e-13 87.9
49 TraesCS1B01G381200 chr2D 90.278 72 7 0 2347 2418 7288575 7288504 9.520000e-16 95.3
50 TraesCS1B01G381200 chr3A 96.491 57 1 1 3169 3224 24783768 24783712 3.420000e-15 93.5
51 TraesCS1B01G381200 chr5D 98.039 51 1 0 3174 3224 46029426 46029376 4.430000e-14 89.8
52 TraesCS1B01G381200 chr4A 98.039 51 1 0 3174 3224 621583780 621583730 4.430000e-14 89.8
53 TraesCS1B01G381200 chr6B 92.063 63 3 2 3163 3224 20957779 20957840 1.590000e-13 87.9
54 TraesCS1B01G381200 chr3B 87.342 79 7 3 2341 2418 22264736 22264812 1.590000e-13 87.9
55 TraesCS1B01G381200 chr4B 87.179 78 7 3 2342 2418 610753115 610753190 5.730000e-13 86.1
56 TraesCS1B01G381200 chr7A 90.625 64 4 2 3161 3224 637917019 637916958 2.060000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G381200 chr1B 614182204 614185427 3223 False 2068.666667 5954 89.312667 1 3224 3 chr1B.!!$F3 3223
1 TraesCS1B01G381200 chr1B 614278022 614278954 932 False 259.000000 429 82.358333 1039 2064 3 chr1B.!!$F4 1025
2 TraesCS1B01G381200 chr7B 730140503 730141396 893 False 1447.000000 1447 96.201000 2348 3224 1 chr7B.!!$F2 876
3 TraesCS1B01G381200 chr1A 544175965 544177728 1763 False 584.000000 1027 86.588750 511 2187 4 chr1A.!!$F4 1676
4 TraesCS1B01G381200 chr1A 544194322 544198803 4481 False 257.000000 411 79.290000 1034 1908 4 chr1A.!!$F5 874
5 TraesCS1B01G381200 chr1D 436605465 436606031 566 True 756.000000 756 91.019000 2429 2992 1 chr1D.!!$R2 563
6 TraesCS1B01G381200 chr1D 448282907 448284191 1284 False 674.333333 1005 87.676000 888 2148 3 chr1D.!!$F2 1260
7 TraesCS1B01G381200 chr1D 448376807 448377386 579 False 361.500000 499 85.385000 1217 1908 2 chr1D.!!$F3 691
8 TraesCS1B01G381200 chr1D 448388772 448389393 621 False 277.000000 339 83.078500 1039 1755 2 chr1D.!!$F4 716
9 TraesCS1B01G381200 chr1D 448423975 448425016 1041 False 259.866667 545 82.860000 1038 2172 3 chr1D.!!$F5 1134
10 TraesCS1B01G381200 chr3D 91975704 91976447 743 False 942.000000 942 89.696000 2429 3172 1 chr3D.!!$F1 743
11 TraesCS1B01G381200 chr3D 472313712 472314448 736 False 885.000000 885 88.522000 2429 3172 1 chr3D.!!$F2 743
12 TraesCS1B01G381200 chr4D 8130338 8131077 739 False 893.000000 893 88.639000 2430 3172 1 chr4D.!!$F1 742
13 TraesCS1B01G381200 chr2A 735697264 735697828 564 False 758.000000 758 91.146000 2429 2989 1 chr2A.!!$F1 560
14 TraesCS1B01G381200 chr6D 23615984 23616582 598 False 726.000000 726 88.852000 2429 3024 1 chr6D.!!$F1 595
15 TraesCS1B01G381200 chr6A 566690745 566691622 877 True 567.500000 721 89.451500 2428 3175 2 chr6A.!!$R2 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 449 0.101399 CGGACATCCTTGAGACGGAG 59.899 60.0 0.00 0.0 33.29 4.63 F
454 455 0.114560 TCCTTGAGACGGAGGGTTCT 59.885 55.0 0.00 0.0 33.73 3.01 F
629 630 0.176680 CACCGCTGCTACTTCTGGAT 59.823 55.0 0.00 0.0 0.00 3.41 F
675 676 0.230260 GAGCGACGTTGCGTTGTTTA 59.770 50.0 21.74 0.0 42.55 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 1854 0.255318 CCTTCTGCTTGGCCATCTCT 59.745 55.000 6.09 0.00 0.00 3.10 R
2126 2400 1.167851 ACACCAAAGCACATGGATCG 58.832 50.000 9.15 1.11 40.56 3.69 R
2208 2482 2.889045 TCCCGAGGAATATGAACTACCG 59.111 50.000 0.00 0.00 0.00 4.02 R
2360 3183 4.217550 CCATCACCACCAACTCGTATTTTT 59.782 41.667 0.00 0.00 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.421212 TCCAAATGCATGTTTTGAAAAGC 57.579 34.783 18.90 0.00 36.40 3.51
23 24 5.124645 TCCAAATGCATGTTTTGAAAAGCT 58.875 33.333 18.90 0.00 36.40 3.74
24 25 5.589452 TCCAAATGCATGTTTTGAAAAGCTT 59.411 32.000 18.90 0.00 36.40 3.74
25 26 6.095160 TCCAAATGCATGTTTTGAAAAGCTTT 59.905 30.769 18.90 5.69 36.40 3.51
26 27 6.752815 CCAAATGCATGTTTTGAAAAGCTTTT 59.247 30.769 24.08 24.08 36.40 2.27
27 28 7.253817 CCAAATGCATGTTTTGAAAAGCTTTTG 60.254 33.333 28.42 21.43 42.12 2.44
28 29 6.680874 ATGCATGTTTTGAAAAGCTTTTGA 57.319 29.167 28.42 18.26 0.00 2.69
29 30 6.492007 TGCATGTTTTGAAAAGCTTTTGAA 57.508 29.167 28.42 23.11 0.00 2.69
30 31 7.086230 TGCATGTTTTGAAAAGCTTTTGAAT 57.914 28.000 28.42 8.99 0.00 2.57
31 32 8.206325 TGCATGTTTTGAAAAGCTTTTGAATA 57.794 26.923 28.42 18.10 0.00 1.75
32 33 8.121708 TGCATGTTTTGAAAAGCTTTTGAATAC 58.878 29.630 28.42 26.93 30.51 1.89
33 34 8.121708 GCATGTTTTGAAAAGCTTTTGAATACA 58.878 29.630 32.11 32.11 38.59 2.29
36 37 9.598517 TGTTTTGAAAAGCTTTTGAATACATCT 57.401 25.926 29.10 7.63 33.30 2.90
98 99 9.950680 ATGGCATTAATCATTTTCTAAACTACG 57.049 29.630 0.00 0.00 0.00 3.51
99 100 7.913297 TGGCATTAATCATTTTCTAAACTACGC 59.087 33.333 0.00 0.00 0.00 4.42
100 101 7.913297 GGCATTAATCATTTTCTAAACTACGCA 59.087 33.333 0.00 0.00 0.00 5.24
101 102 9.284594 GCATTAATCATTTTCTAAACTACGCAA 57.715 29.630 0.00 0.00 0.00 4.85
139 140 6.491394 TGTCAGAACATTTTAGAAAACACGG 58.509 36.000 0.00 0.00 0.00 4.94
140 141 5.912955 GTCAGAACATTTTAGAAAACACGGG 59.087 40.000 0.00 0.00 0.00 5.28
141 142 5.823570 TCAGAACATTTTAGAAAACACGGGA 59.176 36.000 0.00 0.00 0.00 5.14
142 143 6.319152 TCAGAACATTTTAGAAAACACGGGAA 59.681 34.615 0.00 0.00 0.00 3.97
143 144 6.416750 CAGAACATTTTAGAAAACACGGGAAC 59.583 38.462 0.00 0.00 0.00 3.62
144 145 5.838531 ACATTTTAGAAAACACGGGAACA 57.161 34.783 0.00 0.00 0.00 3.18
145 146 6.399639 ACATTTTAGAAAACACGGGAACAT 57.600 33.333 0.00 0.00 0.00 2.71
146 147 6.811954 ACATTTTAGAAAACACGGGAACATT 58.188 32.000 0.00 0.00 0.00 2.71
147 148 6.921307 ACATTTTAGAAAACACGGGAACATTC 59.079 34.615 0.00 0.00 0.00 2.67
148 149 6.452494 TTTTAGAAAACACGGGAACATTCA 57.548 33.333 0.00 0.00 0.00 2.57
149 150 6.642707 TTTAGAAAACACGGGAACATTCAT 57.357 33.333 0.00 0.00 0.00 2.57
150 151 6.642707 TTAGAAAACACGGGAACATTCATT 57.357 33.333 0.00 0.00 0.00 2.57
151 152 5.529581 AGAAAACACGGGAACATTCATTT 57.470 34.783 0.00 0.00 0.00 2.32
152 153 6.642707 AGAAAACACGGGAACATTCATTTA 57.357 33.333 0.00 0.00 0.00 1.40
153 154 7.045126 AGAAAACACGGGAACATTCATTTAA 57.955 32.000 0.00 0.00 0.00 1.52
154 155 7.493367 AGAAAACACGGGAACATTCATTTAAA 58.507 30.769 0.00 0.00 0.00 1.52
155 156 8.147704 AGAAAACACGGGAACATTCATTTAAAT 58.852 29.630 0.00 0.00 0.00 1.40
156 157 9.413048 GAAAACACGGGAACATTCATTTAAATA 57.587 29.630 0.00 0.00 0.00 1.40
157 158 9.936759 AAAACACGGGAACATTCATTTAAATAT 57.063 25.926 0.00 0.00 0.00 1.28
158 159 8.925161 AACACGGGAACATTCATTTAAATATG 57.075 30.769 0.00 5.01 0.00 1.78
159 160 8.287439 ACACGGGAACATTCATTTAAATATGA 57.713 30.769 14.96 3.22 32.87 2.15
160 161 8.744652 ACACGGGAACATTCATTTAAATATGAA 58.255 29.630 14.96 11.05 45.64 2.57
161 162 9.236691 CACGGGAACATTCATTTAAATATGAAG 57.763 33.333 14.96 8.00 45.00 3.02
162 163 8.966868 ACGGGAACATTCATTTAAATATGAAGT 58.033 29.630 14.96 8.46 45.00 3.01
231 232 8.755696 TGAACATTTTCTAAAATATGGCACAC 57.244 30.769 0.00 0.00 37.62 3.82
232 233 8.363390 TGAACATTTTCTAAAATATGGCACACA 58.637 29.630 0.00 0.00 37.62 3.72
233 234 9.369904 GAACATTTTCTAAAATATGGCACACAT 57.630 29.630 0.00 0.00 37.62 3.21
234 235 9.723601 AACATTTTCTAAAATATGGCACACATT 57.276 25.926 0.00 0.00 36.83 2.71
249 250 8.235359 TGGCACACATTTTATGAATGATATCA 57.765 30.769 8.10 8.10 0.00 2.15
250 251 8.693625 TGGCACACATTTTATGAATGATATCAA 58.306 29.630 9.99 0.00 32.06 2.57
251 252 8.971321 GGCACACATTTTATGAATGATATCAAC 58.029 33.333 9.99 7.81 32.06 3.18
252 253 9.518906 GCACACATTTTATGAATGATATCAACA 57.481 29.630 9.99 13.12 32.06 3.33
315 316 7.715266 TGAATATTTTCATGTGGGATGAACA 57.285 32.000 0.00 0.00 36.94 3.18
316 317 8.308851 TGAATATTTTCATGTGGGATGAACAT 57.691 30.769 0.00 0.00 36.94 2.71
317 318 8.760735 TGAATATTTTCATGTGGGATGAACATT 58.239 29.630 0.00 0.00 36.94 2.71
318 319 9.603921 GAATATTTTCATGTGGGATGAACATTT 57.396 29.630 0.00 0.00 37.71 2.32
319 320 9.962809 AATATTTTCATGTGGGATGAACATTTT 57.037 25.926 0.00 0.00 37.71 1.82
322 323 9.790344 ATTTTCATGTGGGATGAACATTTTAAA 57.210 25.926 0.00 0.00 37.71 1.52
323 324 9.618890 TTTTCATGTGGGATGAACATTTTAAAA 57.381 25.926 2.51 2.51 37.71 1.52
324 325 9.618890 TTTCATGTGGGATGAACATTTTAAAAA 57.381 25.926 4.44 0.00 37.71 1.94
410 411 4.633769 CTCTTCTTGAGCAGGGCC 57.366 61.111 0.00 0.00 35.84 5.80
411 412 1.681666 CTCTTCTTGAGCAGGGCCA 59.318 57.895 6.18 0.00 35.84 5.36
412 413 0.676151 CTCTTCTTGAGCAGGGCCAC 60.676 60.000 6.18 0.00 35.84 5.01
413 414 1.130054 TCTTCTTGAGCAGGGCCACT 61.130 55.000 6.18 1.51 0.00 4.00
414 415 0.251077 CTTCTTGAGCAGGGCCACTT 60.251 55.000 6.18 0.00 0.00 3.16
415 416 0.250901 TTCTTGAGCAGGGCCACTTC 60.251 55.000 6.18 0.00 0.00 3.01
416 417 1.073722 CTTGAGCAGGGCCACTTCA 59.926 57.895 6.18 2.70 0.00 3.02
417 418 0.323178 CTTGAGCAGGGCCACTTCAT 60.323 55.000 6.18 0.00 0.00 2.57
418 419 0.322816 TTGAGCAGGGCCACTTCATC 60.323 55.000 6.18 0.00 0.00 2.92
419 420 1.203441 TGAGCAGGGCCACTTCATCT 61.203 55.000 6.18 0.00 0.00 2.90
420 421 0.833287 GAGCAGGGCCACTTCATCTA 59.167 55.000 6.18 0.00 0.00 1.98
421 422 0.835941 AGCAGGGCCACTTCATCTAG 59.164 55.000 6.18 0.00 0.00 2.43
422 423 0.179034 GCAGGGCCACTTCATCTAGG 60.179 60.000 6.18 0.00 0.00 3.02
423 424 0.179034 CAGGGCCACTTCATCTAGGC 60.179 60.000 6.18 0.00 46.28 3.93
427 428 2.355010 GCCACTTCATCTAGGCCATT 57.645 50.000 5.01 0.00 41.25 3.16
428 429 2.659428 GCCACTTCATCTAGGCCATTT 58.341 47.619 5.01 0.00 41.25 2.32
429 430 2.620585 GCCACTTCATCTAGGCCATTTC 59.379 50.000 5.01 0.00 41.25 2.17
430 431 2.874701 CCACTTCATCTAGGCCATTTCG 59.125 50.000 5.01 0.00 0.00 3.46
431 432 2.874701 CACTTCATCTAGGCCATTTCGG 59.125 50.000 5.01 0.00 38.11 4.30
432 433 2.771943 ACTTCATCTAGGCCATTTCGGA 59.228 45.455 5.01 0.00 36.56 4.55
438 439 4.986467 GGCCATTTCGGACATCCT 57.014 55.556 0.00 0.00 45.64 3.24
439 440 3.191182 GGCCATTTCGGACATCCTT 57.809 52.632 0.00 0.00 45.64 3.36
440 441 0.740737 GGCCATTTCGGACATCCTTG 59.259 55.000 0.00 0.00 45.64 3.61
441 442 1.681780 GGCCATTTCGGACATCCTTGA 60.682 52.381 0.00 0.00 45.64 3.02
442 443 1.672881 GCCATTTCGGACATCCTTGAG 59.327 52.381 0.00 0.00 36.56 3.02
443 444 2.680805 GCCATTTCGGACATCCTTGAGA 60.681 50.000 0.00 0.00 36.56 3.27
444 445 2.939103 CCATTTCGGACATCCTTGAGAC 59.061 50.000 0.00 0.00 36.56 3.36
445 446 2.363788 TTTCGGACATCCTTGAGACG 57.636 50.000 0.00 0.00 0.00 4.18
446 447 0.530744 TTCGGACATCCTTGAGACGG 59.469 55.000 0.00 0.00 0.00 4.79
447 448 0.323087 TCGGACATCCTTGAGACGGA 60.323 55.000 0.00 0.00 34.52 4.69
448 449 0.101399 CGGACATCCTTGAGACGGAG 59.899 60.000 0.00 0.00 33.29 4.63
449 450 0.461961 GGACATCCTTGAGACGGAGG 59.538 60.000 0.00 0.00 38.26 4.30
450 451 0.461961 GACATCCTTGAGACGGAGGG 59.538 60.000 0.00 0.00 36.69 4.30
451 452 0.252284 ACATCCTTGAGACGGAGGGT 60.252 55.000 0.00 0.00 36.69 4.34
452 453 0.905357 CATCCTTGAGACGGAGGGTT 59.095 55.000 0.00 0.00 33.29 4.11
453 454 1.134670 CATCCTTGAGACGGAGGGTTC 60.135 57.143 0.00 0.00 33.29 3.62
454 455 0.114560 TCCTTGAGACGGAGGGTTCT 59.885 55.000 0.00 0.00 33.73 3.01
455 456 0.977395 CCTTGAGACGGAGGGTTCTT 59.023 55.000 0.00 0.00 0.00 2.52
456 457 1.348036 CCTTGAGACGGAGGGTTCTTT 59.652 52.381 0.00 0.00 0.00 2.52
457 458 2.613223 CCTTGAGACGGAGGGTTCTTTC 60.613 54.545 0.00 0.00 0.00 2.62
458 459 1.712056 TGAGACGGAGGGTTCTTTCA 58.288 50.000 0.00 0.00 0.00 2.69
459 460 2.257207 TGAGACGGAGGGTTCTTTCAT 58.743 47.619 0.00 0.00 0.00 2.57
460 461 2.233922 TGAGACGGAGGGTTCTTTCATC 59.766 50.000 0.00 0.00 0.00 2.92
461 462 2.498078 GAGACGGAGGGTTCTTTCATCT 59.502 50.000 0.00 0.00 0.00 2.90
462 463 2.498078 AGACGGAGGGTTCTTTCATCTC 59.502 50.000 0.00 0.00 0.00 2.75
463 464 2.233922 GACGGAGGGTTCTTTCATCTCA 59.766 50.000 0.00 0.00 0.00 3.27
464 465 2.028020 ACGGAGGGTTCTTTCATCTCAC 60.028 50.000 0.00 0.00 0.00 3.51
465 466 2.234908 CGGAGGGTTCTTTCATCTCACT 59.765 50.000 0.00 0.00 0.00 3.41
466 467 3.677424 CGGAGGGTTCTTTCATCTCACTC 60.677 52.174 0.00 0.00 0.00 3.51
467 468 3.261897 GGAGGGTTCTTTCATCTCACTCA 59.738 47.826 0.00 0.00 0.00 3.41
468 469 4.249661 GAGGGTTCTTTCATCTCACTCAC 58.750 47.826 0.00 0.00 0.00 3.51
469 470 3.648067 AGGGTTCTTTCATCTCACTCACA 59.352 43.478 0.00 0.00 0.00 3.58
470 471 3.999663 GGGTTCTTTCATCTCACTCACAG 59.000 47.826 0.00 0.00 0.00 3.66
471 472 3.434984 GGTTCTTTCATCTCACTCACAGC 59.565 47.826 0.00 0.00 0.00 4.40
472 473 4.314121 GTTCTTTCATCTCACTCACAGCT 58.686 43.478 0.00 0.00 0.00 4.24
473 474 5.473931 GTTCTTTCATCTCACTCACAGCTA 58.526 41.667 0.00 0.00 0.00 3.32
474 475 5.321959 TCTTTCATCTCACTCACAGCTAG 57.678 43.478 0.00 0.00 0.00 3.42
475 476 5.012893 TCTTTCATCTCACTCACAGCTAGA 58.987 41.667 0.00 0.00 0.00 2.43
476 477 4.710423 TTCATCTCACTCACAGCTAGAC 57.290 45.455 0.00 0.00 0.00 2.59
477 478 3.690460 TCATCTCACTCACAGCTAGACA 58.310 45.455 0.00 0.00 0.00 3.41
478 479 4.082125 TCATCTCACTCACAGCTAGACAA 58.918 43.478 0.00 0.00 0.00 3.18
479 480 4.524328 TCATCTCACTCACAGCTAGACAAA 59.476 41.667 0.00 0.00 0.00 2.83
480 481 4.511617 TCTCACTCACAGCTAGACAAAG 57.488 45.455 0.00 0.00 0.00 2.77
481 482 4.145052 TCTCACTCACAGCTAGACAAAGA 58.855 43.478 0.00 0.00 0.00 2.52
482 483 4.022762 TCTCACTCACAGCTAGACAAAGAC 60.023 45.833 0.00 0.00 0.00 3.01
483 484 2.983136 CACTCACAGCTAGACAAAGACG 59.017 50.000 0.00 0.00 0.00 4.18
484 485 1.989165 CTCACAGCTAGACAAAGACGC 59.011 52.381 0.00 0.00 0.00 5.19
485 486 0.710567 CACAGCTAGACAAAGACGCG 59.289 55.000 3.53 3.53 0.00 6.01
486 487 1.009389 ACAGCTAGACAAAGACGCGC 61.009 55.000 5.73 0.00 0.00 6.86
487 488 1.446272 AGCTAGACAAAGACGCGCC 60.446 57.895 5.73 0.00 0.00 6.53
488 489 1.736645 GCTAGACAAAGACGCGCCA 60.737 57.895 5.73 0.00 0.00 5.69
489 490 1.289109 GCTAGACAAAGACGCGCCAA 61.289 55.000 5.73 0.00 0.00 4.52
490 491 1.359848 CTAGACAAAGACGCGCCAAT 58.640 50.000 5.73 0.00 0.00 3.16
491 492 1.061131 CTAGACAAAGACGCGCCAATG 59.939 52.381 5.73 3.16 0.00 2.82
492 493 1.797537 GACAAAGACGCGCCAATGC 60.798 57.895 5.73 0.00 0.00 3.56
493 494 2.504681 CAAAGACGCGCCAATGCC 60.505 61.111 5.73 0.00 0.00 4.40
494 495 3.747976 AAAGACGCGCCAATGCCC 61.748 61.111 5.73 0.00 0.00 5.36
501 502 2.752238 CGCCAATGCCCCCGTAAA 60.752 61.111 0.00 0.00 0.00 2.01
502 503 2.344203 CGCCAATGCCCCCGTAAAA 61.344 57.895 0.00 0.00 0.00 1.52
503 504 1.878656 CGCCAATGCCCCCGTAAAAA 61.879 55.000 0.00 0.00 0.00 1.94
582 583 4.088421 GCGAGATTTCCGAGCGAA 57.912 55.556 0.00 0.00 0.00 4.70
587 588 1.844962 GAGATTTCCGAGCGAACGTAC 59.155 52.381 0.00 0.00 0.00 3.67
590 591 2.128853 TTTCCGAGCGAACGTACGGT 62.129 55.000 21.06 14.45 46.35 4.83
599 600 2.227556 CGAACGTACGGTGCAATTTTC 58.772 47.619 21.06 10.23 0.00 2.29
611 612 1.810151 GCAATTTTCTACCCGCTGTCA 59.190 47.619 0.00 0.00 0.00 3.58
629 630 0.176680 CACCGCTGCTACTTCTGGAT 59.823 55.000 0.00 0.00 0.00 3.41
664 665 1.983196 CTCATCGAGTGGAGCGACGT 61.983 60.000 0.00 0.00 40.94 4.34
665 666 1.154016 CATCGAGTGGAGCGACGTT 60.154 57.895 0.00 0.00 40.94 3.99
671 672 3.334751 TGGAGCGACGTTGCGTTG 61.335 61.111 21.74 4.69 41.37 4.10
672 673 3.335534 GGAGCGACGTTGCGTTGT 61.336 61.111 21.74 4.40 42.55 3.32
675 676 0.230260 GAGCGACGTTGCGTTGTTTA 59.770 50.000 21.74 0.00 42.55 2.01
676 677 0.863144 AGCGACGTTGCGTTGTTTAT 59.137 45.000 21.74 0.00 42.55 1.40
685 696 0.357567 GCGTTGTTTATTCGCGTTGC 59.642 50.000 5.77 0.00 40.51 4.17
698 709 1.358759 CGTTGCTTCCTTTTGCGGT 59.641 52.632 0.00 0.00 0.00 5.68
699 710 0.589223 CGTTGCTTCCTTTTGCGGTA 59.411 50.000 0.00 0.00 0.00 4.02
705 716 2.095718 GCTTCCTTTTGCGGTAAGACAG 60.096 50.000 0.00 0.00 0.00 3.51
708 719 1.234821 CTTTTGCGGTAAGACAGGCA 58.765 50.000 0.00 0.00 0.00 4.75
711 722 0.739462 TTGCGGTAAGACAGGCATCG 60.739 55.000 0.00 0.00 35.03 3.84
712 723 2.526120 GCGGTAAGACAGGCATCGC 61.526 63.158 0.00 0.00 35.12 4.58
713 724 1.153647 CGGTAAGACAGGCATCGCA 60.154 57.895 0.00 0.00 0.00 5.10
714 725 1.421410 CGGTAAGACAGGCATCGCAC 61.421 60.000 0.00 0.00 0.00 5.34
715 726 1.421410 GGTAAGACAGGCATCGCACG 61.421 60.000 0.00 0.00 0.00 5.34
716 727 0.736325 GTAAGACAGGCATCGCACGT 60.736 55.000 0.00 0.00 0.00 4.49
717 728 0.735978 TAAGACAGGCATCGCACGTG 60.736 55.000 12.28 12.28 0.00 4.49
718 729 2.432456 GACAGGCATCGCACGTGA 60.432 61.111 22.23 0.00 0.00 4.35
719 730 2.730672 GACAGGCATCGCACGTGAC 61.731 63.158 22.23 9.90 0.00 3.67
720 731 2.738139 CAGGCATCGCACGTGACA 60.738 61.111 22.23 4.23 0.00 3.58
721 732 2.738521 AGGCATCGCACGTGACAC 60.739 61.111 22.23 0.00 0.00 3.67
722 733 3.788766 GGCATCGCACGTGACACC 61.789 66.667 22.23 8.74 0.00 4.16
723 734 4.134187 GCATCGCACGTGACACCG 62.134 66.667 22.23 13.52 0.00 4.94
741 752 1.806251 CGCGCGCACACAAACAAATT 61.806 50.000 32.61 0.00 0.00 1.82
751 762 5.204833 CACACAAACAAATTACACCGAGAG 58.795 41.667 0.00 0.00 0.00 3.20
752 763 5.007234 CACACAAACAAATTACACCGAGAGA 59.993 40.000 0.00 0.00 0.00 3.10
753 764 5.587043 ACACAAACAAATTACACCGAGAGAA 59.413 36.000 0.00 0.00 0.00 2.87
755 766 6.970043 CACAAACAAATTACACCGAGAGAAAA 59.030 34.615 0.00 0.00 0.00 2.29
756 767 7.486551 CACAAACAAATTACACCGAGAGAAAAA 59.513 33.333 0.00 0.00 0.00 1.94
776 787 2.672961 ACAACACGTCGATGGATCAT 57.327 45.000 9.90 0.00 0.00 2.45
777 788 2.540515 ACAACACGTCGATGGATCATC 58.459 47.619 9.90 0.00 37.50 2.92
778 789 2.094234 ACAACACGTCGATGGATCATCA 60.094 45.455 9.90 0.00 40.54 3.07
779 790 2.498807 ACACGTCGATGGATCATCAG 57.501 50.000 9.90 2.28 40.54 2.90
780 791 2.024414 ACACGTCGATGGATCATCAGA 58.976 47.619 9.90 4.25 40.54 3.27
823 837 2.203112 ATGGCGTCGATGCATGCT 60.203 55.556 29.46 9.05 36.28 3.79
845 859 4.326766 CGCACCGCCACCAAGTTG 62.327 66.667 0.00 0.00 0.00 3.16
846 860 4.645921 GCACCGCCACCAAGTTGC 62.646 66.667 0.00 0.00 0.00 4.17
847 861 3.215568 CACCGCCACCAAGTTGCA 61.216 61.111 0.00 0.00 0.00 4.08
848 862 2.441164 ACCGCCACCAAGTTGCAA 60.441 55.556 0.00 0.00 0.00 4.08
849 863 2.027460 CCGCCACCAAGTTGCAAC 59.973 61.111 22.17 22.17 0.00 4.17
850 864 2.027460 CGCCACCAAGTTGCAACC 59.973 61.111 25.62 7.76 0.00 3.77
851 865 2.489275 CGCCACCAAGTTGCAACCT 61.489 57.895 25.62 10.83 0.00 3.50
852 866 1.363807 GCCACCAAGTTGCAACCTC 59.636 57.895 25.62 1.18 0.00 3.85
853 867 1.654220 CCACCAAGTTGCAACCTCG 59.346 57.895 25.62 14.86 0.00 4.63
854 868 1.008538 CACCAAGTTGCAACCTCGC 60.009 57.895 25.62 0.35 0.00 5.03
855 869 1.453015 ACCAAGTTGCAACCTCGCA 60.453 52.632 25.62 0.00 41.03 5.10
856 870 1.283793 CCAAGTTGCAACCTCGCAG 59.716 57.895 25.62 9.34 44.14 5.18
857 871 1.370900 CAAGTTGCAACCTCGCAGC 60.371 57.895 25.62 0.00 44.14 5.25
858 872 2.555547 AAGTTGCAACCTCGCAGCC 61.556 57.895 25.62 0.00 43.43 4.85
885 899 1.154150 GCATCCAACTTGTGCTCGC 60.154 57.895 0.00 0.00 36.02 5.03
890 904 3.044305 AACTTGTGCTCGCTCGCC 61.044 61.111 0.00 0.00 0.00 5.54
929 998 4.614284 CACTTGTTTATTGCAGCTTCTTCG 59.386 41.667 0.00 0.00 0.00 3.79
1012 1083 2.181021 CTTCGCGAAGGTACGGCT 59.819 61.111 35.58 0.00 34.87 5.52
1094 1165 1.414181 TGGCTCATAGCTTCTGCCTAC 59.586 52.381 16.68 0.00 41.99 3.18
1111 1182 2.463589 TACAAAGGCCACCTGCTCCG 62.464 60.000 5.01 0.00 40.92 4.63
1112 1183 3.570212 AAAGGCCACCTGCTCCGT 61.570 61.111 5.01 0.00 40.92 4.69
1119 1190 3.386237 ACCTGCTCCGTGCTCCTC 61.386 66.667 0.00 0.00 43.37 3.71
1202 1277 1.623542 TTTCCCCCTTCCGAGCTAGC 61.624 60.000 6.62 6.62 0.00 3.42
1215 1338 3.265791 CGAGCTAGCTCAAGAAACCAAT 58.734 45.455 36.92 4.74 42.86 3.16
1293 1420 2.359900 GAGGTAACCGTCGTCTCCTTA 58.640 52.381 0.00 0.00 37.17 2.69
1307 1434 4.547532 GTCTCCTTAGTGTGTAGTGTGTG 58.452 47.826 0.00 0.00 0.00 3.82
1454 1593 3.249189 ACCAAGCAGAAGGCCGGA 61.249 61.111 5.05 0.00 46.50 5.14
1455 1594 2.747855 CCAAGCAGAAGGCCGGAC 60.748 66.667 5.05 0.00 46.50 4.79
1456 1595 2.032528 CAAGCAGAAGGCCGGACA 59.967 61.111 11.69 0.00 46.50 4.02
1457 1596 2.037136 CAAGCAGAAGGCCGGACAG 61.037 63.158 11.69 0.00 46.50 3.51
1458 1597 2.217038 AAGCAGAAGGCCGGACAGA 61.217 57.895 11.69 0.00 46.50 3.41
1459 1598 2.435059 GCAGAAGGCCGGACAGAC 60.435 66.667 11.69 0.00 36.11 3.51
1460 1599 2.266055 CAGAAGGCCGGACAGACC 59.734 66.667 11.69 0.00 0.00 3.85
1461 1600 2.203788 AGAAGGCCGGACAGACCA 60.204 61.111 11.69 0.00 38.90 4.02
1462 1601 2.047179 GAAGGCCGGACAGACCAC 60.047 66.667 11.69 0.00 38.90 4.16
1463 1602 3.607370 GAAGGCCGGACAGACCACC 62.607 68.421 11.69 0.00 38.90 4.61
1469 1608 4.083862 GGACAGACCACCGAGGCC 62.084 72.222 0.00 0.00 43.14 5.19
1470 1609 3.311110 GACAGACCACCGAGGCCA 61.311 66.667 5.01 0.00 43.14 5.36
1471 1610 3.591254 GACAGACCACCGAGGCCAC 62.591 68.421 5.01 0.00 43.14 5.01
1472 1611 4.394712 CAGACCACCGAGGCCACC 62.395 72.222 5.01 0.00 43.14 4.61
1473 1612 4.954118 AGACCACCGAGGCCACCA 62.954 66.667 5.01 0.00 43.14 4.17
1474 1613 3.948719 GACCACCGAGGCCACCAA 61.949 66.667 5.01 0.00 43.14 3.67
1475 1614 3.901797 GACCACCGAGGCCACCAAG 62.902 68.421 5.01 0.00 43.14 3.61
1477 1616 4.641645 CACCGAGGCCACCAAGCA 62.642 66.667 5.01 0.00 0.00 3.91
1478 1617 4.335647 ACCGAGGCCACCAAGCAG 62.336 66.667 5.01 0.00 0.00 4.24
1479 1618 4.020617 CCGAGGCCACCAAGCAGA 62.021 66.667 5.01 0.00 0.00 4.26
1480 1619 2.032528 CGAGGCCACCAAGCAGAA 59.967 61.111 5.01 0.00 0.00 3.02
1481 1620 2.037136 CGAGGCCACCAAGCAGAAG 61.037 63.158 5.01 0.00 0.00 2.85
1482 1621 1.676967 GAGGCCACCAAGCAGAAGG 60.677 63.158 5.01 0.00 0.00 3.46
1483 1622 3.376918 GGCCACCAAGCAGAAGGC 61.377 66.667 0.00 0.00 44.48 4.35
1484 1623 3.376918 GCCACCAAGCAGAAGGCC 61.377 66.667 0.00 0.00 46.50 5.19
1485 1624 3.058160 CCACCAAGCAGAAGGCCG 61.058 66.667 0.00 0.00 46.50 6.13
1486 1625 3.058160 CACCAAGCAGAAGGCCGG 61.058 66.667 0.00 0.00 46.50 6.13
1520 1659 3.178540 AACGAAGCAGAAGGCCGGT 62.179 57.895 1.90 0.00 46.50 5.28
1604 1743 1.674057 CGAGGCCAAGGACAAGACT 59.326 57.895 5.01 0.00 0.00 3.24
1682 1854 1.654954 GCTACCTCGGCGAGAAGACA 61.655 60.000 36.47 15.46 0.00 3.41
1686 1858 1.027255 CCTCGGCGAGAAGACAGAGA 61.027 60.000 36.47 0.00 32.67 3.10
1687 1859 1.021202 CTCGGCGAGAAGACAGAGAT 58.979 55.000 32.07 0.00 32.67 2.75
1926 2170 4.980805 GCGCCACCACGAAGGACA 62.981 66.667 0.00 0.00 41.22 4.02
1927 2171 3.041940 CGCCACCACGAAGGACAC 61.042 66.667 5.70 0.00 41.22 3.67
1993 2244 5.164233 GCTTGATTTGCTTTCCTTTAGTCC 58.836 41.667 0.00 0.00 0.00 3.85
2066 2331 5.700832 TCGTGATTTCAGCTCATTTAGTGTT 59.299 36.000 0.00 0.00 0.00 3.32
2117 2386 4.699735 TCGTGTCCGGTTCTGTAATAGTTA 59.300 41.667 0.00 0.00 33.95 2.24
2119 2388 5.863397 CGTGTCCGGTTCTGTAATAGTTAAA 59.137 40.000 0.00 0.00 0.00 1.52
2126 2400 9.080915 CCGGTTCTGTAATAGTTAAAGAGTTAC 57.919 37.037 0.00 0.00 31.39 2.50
2136 2410 8.873215 ATAGTTAAAGAGTTACGATCCATGTG 57.127 34.615 0.00 0.00 0.00 3.21
2191 2465 2.223479 GGCGGCAATAAAGTGTATGTGG 60.223 50.000 3.07 0.00 0.00 4.17
2196 2470 4.574828 GGCAATAAAGTGTATGTGGTCGAT 59.425 41.667 0.00 0.00 0.00 3.59
2203 2477 6.877611 AAGTGTATGTGGTCGATTTTCTTT 57.122 33.333 0.00 0.00 0.00 2.52
2204 2478 7.972832 AAGTGTATGTGGTCGATTTTCTTTA 57.027 32.000 0.00 0.00 0.00 1.85
2205 2479 8.561738 AAGTGTATGTGGTCGATTTTCTTTAT 57.438 30.769 0.00 0.00 0.00 1.40
2208 2482 7.908601 GTGTATGTGGTCGATTTTCTTTATTCC 59.091 37.037 0.00 0.00 0.00 3.01
2209 2483 5.539582 TGTGGTCGATTTTCTTTATTCCG 57.460 39.130 0.00 0.00 0.00 4.30
2211 2485 4.393990 GTGGTCGATTTTCTTTATTCCGGT 59.606 41.667 0.00 0.00 0.00 5.28
2213 2487 5.813672 TGGTCGATTTTCTTTATTCCGGTAG 59.186 40.000 0.00 0.00 0.00 3.18
2215 2489 6.314648 GGTCGATTTTCTTTATTCCGGTAGTT 59.685 38.462 0.00 0.00 0.00 2.24
2216 2490 7.397194 GTCGATTTTCTTTATTCCGGTAGTTC 58.603 38.462 0.00 0.00 0.00 3.01
2217 2491 7.063780 GTCGATTTTCTTTATTCCGGTAGTTCA 59.936 37.037 0.00 0.00 0.00 3.18
2219 2493 9.037737 CGATTTTCTTTATTCCGGTAGTTCATA 57.962 33.333 0.00 0.00 0.00 2.15
2225 2499 8.365647 TCTTTATTCCGGTAGTTCATATTCCTC 58.634 37.037 0.00 0.00 0.00 3.71
2226 2500 4.579454 TTCCGGTAGTTCATATTCCTCG 57.421 45.455 0.00 0.00 0.00 4.63
2227 2501 2.889045 TCCGGTAGTTCATATTCCTCGG 59.111 50.000 0.00 0.00 36.70 4.63
2233 2939 6.296803 GGTAGTTCATATTCCTCGGGAAAAT 58.703 40.000 9.07 0.00 45.41 1.82
2242 2948 8.629158 CATATTCCTCGGGAAAATTATCAACAA 58.371 33.333 9.07 0.00 45.41 2.83
2243 2949 6.902771 TTCCTCGGGAAAATTATCAACAAA 57.097 33.333 3.21 0.00 38.93 2.83
2244 2950 6.902771 TCCTCGGGAAAATTATCAACAAAA 57.097 33.333 0.00 0.00 0.00 2.44
2245 2951 7.475137 TCCTCGGGAAAATTATCAACAAAAT 57.525 32.000 0.00 0.00 0.00 1.82
2246 2952 7.902087 TCCTCGGGAAAATTATCAACAAAATT 58.098 30.769 0.00 0.00 0.00 1.82
2249 2955 9.202273 CTCGGGAAAATTATCAACAAAATTCAA 57.798 29.630 0.00 0.00 0.00 2.69
2250 2956 9.547753 TCGGGAAAATTATCAACAAAATTCAAA 57.452 25.926 0.00 0.00 0.00 2.69
2261 2967 8.023050 TCAACAAAATTCAAATTCAAACACGT 57.977 26.923 0.00 0.00 0.00 4.49
2262 2968 8.165428 TCAACAAAATTCAAATTCAAACACGTC 58.835 29.630 0.00 0.00 0.00 4.34
2263 2969 7.826260 ACAAAATTCAAATTCAAACACGTCT 57.174 28.000 0.00 0.00 0.00 4.18
2264 2970 8.250538 ACAAAATTCAAATTCAAACACGTCTT 57.749 26.923 0.00 0.00 0.00 3.01
2266 2972 9.540431 CAAAATTCAAATTCAAACACGTCTTTT 57.460 25.926 0.00 0.00 0.00 2.27
2303 3126 4.661222 ACATATGGATGTTCACAACACCA 58.339 39.130 7.80 10.91 44.18 4.17
2304 3127 4.458989 ACATATGGATGTTCACAACACCAC 59.541 41.667 7.80 0.00 44.18 4.16
2305 3128 2.727123 TGGATGTTCACAACACCACT 57.273 45.000 6.60 0.00 45.50 4.00
2306 3129 3.847671 TGGATGTTCACAACACCACTA 57.152 42.857 6.60 0.00 45.50 2.74
2309 3132 3.880490 GGATGTTCACAACACCACTACAA 59.120 43.478 0.00 0.00 45.50 2.41
2311 3134 5.163602 GGATGTTCACAACACCACTACAAAA 60.164 40.000 0.00 0.00 45.50 2.44
2312 3135 5.707242 TGTTCACAACACCACTACAAAAA 57.293 34.783 0.00 0.00 36.25 1.94
2313 3136 6.274157 TGTTCACAACACCACTACAAAAAT 57.726 33.333 0.00 0.00 36.25 1.82
2314 3137 6.692486 TGTTCACAACACCACTACAAAAATT 58.308 32.000 0.00 0.00 36.25 1.82
2315 3138 6.809196 TGTTCACAACACCACTACAAAAATTC 59.191 34.615 0.00 0.00 36.25 2.17
2316 3139 5.897050 TCACAACACCACTACAAAAATTCC 58.103 37.500 0.00 0.00 0.00 3.01
2317 3140 5.419155 TCACAACACCACTACAAAAATTCCA 59.581 36.000 0.00 0.00 0.00 3.53
2318 3141 6.071334 TCACAACACCACTACAAAAATTCCAA 60.071 34.615 0.00 0.00 0.00 3.53
2320 3143 6.983890 ACAACACCACTACAAAAATTCCAATC 59.016 34.615 0.00 0.00 0.00 2.67
2321 3144 6.723298 ACACCACTACAAAAATTCCAATCA 57.277 33.333 0.00 0.00 0.00 2.57
2323 3146 7.560368 ACACCACTACAAAAATTCCAATCAAA 58.440 30.769 0.00 0.00 0.00 2.69
2324 3147 8.043710 ACACCACTACAAAAATTCCAATCAAAA 58.956 29.630 0.00 0.00 0.00 2.44
2325 3148 9.054922 CACCACTACAAAAATTCCAATCAAAAT 57.945 29.630 0.00 0.00 0.00 1.82
2326 3149 9.625747 ACCACTACAAAAATTCCAATCAAAATT 57.374 25.926 0.00 0.00 0.00 1.82
2327 3150 9.881529 CCACTACAAAAATTCCAATCAAAATTG 57.118 29.630 0.00 0.00 41.69 2.32
2345 3168 9.685276 TCAAAATTGGACATACACATAATCTCT 57.315 29.630 0.00 0.00 0.00 3.10
2349 3172 9.645059 AATTGGACATACACATAATCTCTATCG 57.355 33.333 0.00 0.00 0.00 2.92
2360 3183 9.549078 CACATAATCTCTATCGCTACTCCTATA 57.451 37.037 0.00 0.00 0.00 1.31
2716 4143 2.283676 GTCTGTCCCCGAGGTCCA 60.284 66.667 0.00 0.00 0.00 4.02
3199 5249 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.124645 AGCTTTTCAAAACATGCATTTGGA 58.875 33.333 18.98 11.51 38.12 3.53
1 2 5.427036 AGCTTTTCAAAACATGCATTTGG 57.573 34.783 18.98 8.54 38.12 3.28
5 6 6.680874 TCAAAAGCTTTTCAAAACATGCAT 57.319 29.167 21.45 0.00 0.00 3.96
6 7 6.492007 TTCAAAAGCTTTTCAAAACATGCA 57.508 29.167 21.45 0.00 0.00 3.96
7 8 8.121708 TGTATTCAAAAGCTTTTCAAAACATGC 58.878 29.630 21.45 4.90 0.00 4.06
10 11 9.598517 AGATGTATTCAAAAGCTTTTCAAAACA 57.401 25.926 21.45 20.72 0.00 2.83
72 73 9.950680 CGTAGTTTAGAAAATGATTAATGCCAT 57.049 29.630 0.00 0.00 0.00 4.40
73 74 7.913297 GCGTAGTTTAGAAAATGATTAATGCCA 59.087 33.333 0.00 0.00 0.00 4.92
74 75 7.913297 TGCGTAGTTTAGAAAATGATTAATGCC 59.087 33.333 0.00 0.00 0.00 4.40
75 76 8.835467 TGCGTAGTTTAGAAAATGATTAATGC 57.165 30.769 0.00 0.00 0.00 3.56
115 116 6.459024 CCCGTGTTTTCTAAAATGTTCTGACA 60.459 38.462 0.00 0.00 40.71 3.58
116 117 5.912955 CCCGTGTTTTCTAAAATGTTCTGAC 59.087 40.000 0.00 0.00 0.00 3.51
117 118 5.823570 TCCCGTGTTTTCTAAAATGTTCTGA 59.176 36.000 0.00 0.00 0.00 3.27
118 119 6.067263 TCCCGTGTTTTCTAAAATGTTCTG 57.933 37.500 0.00 0.00 0.00 3.02
119 120 6.095720 TGTTCCCGTGTTTTCTAAAATGTTCT 59.904 34.615 0.00 0.00 0.00 3.01
120 121 6.267070 TGTTCCCGTGTTTTCTAAAATGTTC 58.733 36.000 0.00 0.00 0.00 3.18
121 122 6.210287 TGTTCCCGTGTTTTCTAAAATGTT 57.790 33.333 0.00 0.00 0.00 2.71
122 123 5.838531 TGTTCCCGTGTTTTCTAAAATGT 57.161 34.783 0.00 0.00 0.00 2.71
123 124 6.920758 TGAATGTTCCCGTGTTTTCTAAAATG 59.079 34.615 0.00 0.00 0.00 2.32
124 125 7.045126 TGAATGTTCCCGTGTTTTCTAAAAT 57.955 32.000 0.00 0.00 0.00 1.82
125 126 6.452494 TGAATGTTCCCGTGTTTTCTAAAA 57.548 33.333 0.00 0.00 0.00 1.52
126 127 6.642707 ATGAATGTTCCCGTGTTTTCTAAA 57.357 33.333 0.00 0.00 0.00 1.85
127 128 6.642707 AATGAATGTTCCCGTGTTTTCTAA 57.357 33.333 0.00 0.00 0.00 2.10
128 129 6.642707 AAATGAATGTTCCCGTGTTTTCTA 57.357 33.333 0.00 0.00 0.00 2.10
129 130 5.529581 AAATGAATGTTCCCGTGTTTTCT 57.470 34.783 0.00 0.00 0.00 2.52
130 131 7.701809 TTTAAATGAATGTTCCCGTGTTTTC 57.298 32.000 0.00 0.00 0.00 2.29
131 132 9.936759 ATATTTAAATGAATGTTCCCGTGTTTT 57.063 25.926 11.05 0.00 0.00 2.43
132 133 9.364989 CATATTTAAATGAATGTTCCCGTGTTT 57.635 29.630 11.05 0.00 0.00 2.83
133 134 8.744652 TCATATTTAAATGAATGTTCCCGTGTT 58.255 29.630 11.05 0.00 32.97 3.32
134 135 8.287439 TCATATTTAAATGAATGTTCCCGTGT 57.713 30.769 11.05 0.00 32.97 4.49
135 136 9.236691 CTTCATATTTAAATGAATGTTCCCGTG 57.763 33.333 11.05 0.00 43.16 4.94
136 137 8.966868 ACTTCATATTTAAATGAATGTTCCCGT 58.033 29.630 11.05 0.00 43.16 5.28
205 206 9.369904 GTGTGCCATATTTTAGAAAATGTTCAT 57.630 29.630 9.92 0.00 38.90 2.57
206 207 8.363390 TGTGTGCCATATTTTAGAAAATGTTCA 58.637 29.630 9.92 2.60 38.90 3.18
207 208 8.755696 TGTGTGCCATATTTTAGAAAATGTTC 57.244 30.769 9.92 0.00 38.90 3.18
208 209 9.723601 AATGTGTGCCATATTTTAGAAAATGTT 57.276 25.926 9.92 0.00 38.90 2.71
209 210 9.723601 AAATGTGTGCCATATTTTAGAAAATGT 57.276 25.926 9.92 1.42 38.90 2.71
218 219 9.887629 TCATTCATAAAATGTGTGCCATATTTT 57.112 25.926 18.93 18.93 43.66 1.82
223 224 8.862085 TGATATCATTCATAAAATGTGTGCCAT 58.138 29.630 0.00 0.00 34.36 4.40
224 225 8.235359 TGATATCATTCATAAAATGTGTGCCA 57.765 30.769 0.00 0.00 0.00 4.92
225 226 8.971321 GTTGATATCATTCATAAAATGTGTGCC 58.029 33.333 6.17 0.00 0.00 5.01
226 227 9.518906 TGTTGATATCATTCATAAAATGTGTGC 57.481 29.630 6.17 0.00 0.00 4.57
292 293 9.603921 AAATGTTCATCCCACATGAAAATATTC 57.396 29.630 0.00 0.00 39.43 1.75
293 294 9.962809 AAAATGTTCATCCCACATGAAAATATT 57.037 25.926 0.00 0.81 39.43 1.28
296 297 9.790344 TTTAAAATGTTCATCCCACATGAAAAT 57.210 25.926 0.00 0.00 39.43 1.82
297 298 9.618890 TTTTAAAATGTTCATCCCACATGAAAA 57.381 25.926 0.00 0.00 39.43 2.29
298 299 9.618890 TTTTTAAAATGTTCATCCCACATGAAA 57.381 25.926 0.00 0.00 39.43 2.69
338 339 8.928270 TTTTACTTGCGTCTTCCAAATAAAAA 57.072 26.923 0.00 0.00 33.59 1.94
339 340 8.928270 TTTTTACTTGCGTCTTCCAAATAAAA 57.072 26.923 0.00 0.00 34.24 1.52
362 363 6.687081 TTCCAAGCGGATCGTATTATTTTT 57.313 33.333 0.00 0.00 42.41 1.94
363 364 5.277828 GCTTCCAAGCGGATCGTATTATTTT 60.278 40.000 0.00 0.00 42.41 1.82
364 365 4.213482 GCTTCCAAGCGGATCGTATTATTT 59.787 41.667 0.00 0.00 42.41 1.40
365 366 3.746492 GCTTCCAAGCGGATCGTATTATT 59.254 43.478 0.00 0.00 42.41 1.40
366 367 3.326747 GCTTCCAAGCGGATCGTATTAT 58.673 45.455 0.00 0.00 42.41 1.28
367 368 2.750948 GCTTCCAAGCGGATCGTATTA 58.249 47.619 0.00 0.00 42.41 0.98
368 369 1.583054 GCTTCCAAGCGGATCGTATT 58.417 50.000 0.00 0.00 42.41 1.89
369 370 3.290776 GCTTCCAAGCGGATCGTAT 57.709 52.632 0.00 0.00 42.41 3.06
370 371 4.827481 GCTTCCAAGCGGATCGTA 57.173 55.556 0.00 0.00 42.41 3.43
394 395 1.130054 AGTGGCCCTGCTCAAGAAGA 61.130 55.000 0.00 0.00 0.00 2.87
395 396 0.251077 AAGTGGCCCTGCTCAAGAAG 60.251 55.000 0.00 0.00 0.00 2.85
396 397 0.250901 GAAGTGGCCCTGCTCAAGAA 60.251 55.000 0.00 0.00 0.00 2.52
397 398 1.376466 GAAGTGGCCCTGCTCAAGA 59.624 57.895 0.00 0.00 0.00 3.02
398 399 0.323178 ATGAAGTGGCCCTGCTCAAG 60.323 55.000 0.00 0.00 0.00 3.02
399 400 0.322816 GATGAAGTGGCCCTGCTCAA 60.323 55.000 0.00 0.00 0.00 3.02
400 401 1.203441 AGATGAAGTGGCCCTGCTCA 61.203 55.000 0.00 0.00 0.00 4.26
401 402 0.833287 TAGATGAAGTGGCCCTGCTC 59.167 55.000 0.00 0.00 0.00 4.26
402 403 0.835941 CTAGATGAAGTGGCCCTGCT 59.164 55.000 0.00 0.00 0.00 4.24
403 404 0.179034 CCTAGATGAAGTGGCCCTGC 60.179 60.000 0.00 0.00 0.00 4.85
404 405 0.179034 GCCTAGATGAAGTGGCCCTG 60.179 60.000 0.00 0.00 39.49 4.45
405 406 2.225792 GCCTAGATGAAGTGGCCCT 58.774 57.895 0.00 0.00 39.49 5.19
406 407 4.887615 GCCTAGATGAAGTGGCCC 57.112 61.111 0.00 0.00 39.49 5.80
408 409 2.355010 AATGGCCTAGATGAAGTGGC 57.645 50.000 3.32 0.00 44.22 5.01
409 410 2.874701 CGAAATGGCCTAGATGAAGTGG 59.125 50.000 3.32 0.00 0.00 4.00
410 411 2.874701 CCGAAATGGCCTAGATGAAGTG 59.125 50.000 3.32 0.00 0.00 3.16
411 412 2.771943 TCCGAAATGGCCTAGATGAAGT 59.228 45.455 3.32 0.00 37.80 3.01
412 413 3.134458 GTCCGAAATGGCCTAGATGAAG 58.866 50.000 3.32 0.00 37.80 3.02
413 414 2.503765 TGTCCGAAATGGCCTAGATGAA 59.496 45.455 3.32 0.00 37.80 2.57
414 415 2.115427 TGTCCGAAATGGCCTAGATGA 58.885 47.619 3.32 0.00 37.80 2.92
415 416 2.620251 TGTCCGAAATGGCCTAGATG 57.380 50.000 3.32 0.00 37.80 2.90
416 417 2.039084 GGATGTCCGAAATGGCCTAGAT 59.961 50.000 3.32 0.00 37.80 1.98
417 418 1.416401 GGATGTCCGAAATGGCCTAGA 59.584 52.381 3.32 0.00 37.80 2.43
418 419 1.417890 AGGATGTCCGAAATGGCCTAG 59.582 52.381 3.32 0.00 42.08 3.02
419 420 1.507140 AGGATGTCCGAAATGGCCTA 58.493 50.000 3.32 0.00 42.08 3.93
420 421 0.625849 AAGGATGTCCGAAATGGCCT 59.374 50.000 3.32 0.00 42.08 5.19
421 422 0.740737 CAAGGATGTCCGAAATGGCC 59.259 55.000 0.00 0.00 42.08 5.36
422 423 1.672881 CTCAAGGATGTCCGAAATGGC 59.327 52.381 0.00 0.00 42.08 4.40
423 424 2.939103 GTCTCAAGGATGTCCGAAATGG 59.061 50.000 0.00 0.00 42.08 3.16
424 425 2.604914 CGTCTCAAGGATGTCCGAAATG 59.395 50.000 0.00 0.00 42.08 2.32
425 426 2.418746 CCGTCTCAAGGATGTCCGAAAT 60.419 50.000 0.00 0.00 42.08 2.17
426 427 1.067142 CCGTCTCAAGGATGTCCGAAA 60.067 52.381 0.00 0.00 42.08 3.46
427 428 0.530744 CCGTCTCAAGGATGTCCGAA 59.469 55.000 0.00 0.00 42.08 4.30
428 429 0.323087 TCCGTCTCAAGGATGTCCGA 60.323 55.000 0.00 0.00 42.08 4.55
429 430 0.101399 CTCCGTCTCAAGGATGTCCG 59.899 60.000 0.00 0.00 42.08 4.79
430 431 0.461961 CCTCCGTCTCAAGGATGTCC 59.538 60.000 0.00 0.00 37.13 4.02
431 432 0.461961 CCCTCCGTCTCAAGGATGTC 59.538 60.000 0.00 0.00 37.13 3.06
432 433 0.252284 ACCCTCCGTCTCAAGGATGT 60.252 55.000 0.00 0.00 37.13 3.06
433 434 0.905357 AACCCTCCGTCTCAAGGATG 59.095 55.000 0.00 0.00 37.13 3.51
434 435 1.196012 GAACCCTCCGTCTCAAGGAT 58.804 55.000 0.00 0.00 37.13 3.24
435 436 0.114560 AGAACCCTCCGTCTCAAGGA 59.885 55.000 0.00 0.00 34.35 3.36
436 437 0.977395 AAGAACCCTCCGTCTCAAGG 59.023 55.000 0.00 0.00 0.00 3.61
437 438 2.037251 TGAAAGAACCCTCCGTCTCAAG 59.963 50.000 0.00 0.00 0.00 3.02
438 439 2.043992 TGAAAGAACCCTCCGTCTCAA 58.956 47.619 0.00 0.00 0.00 3.02
439 440 1.712056 TGAAAGAACCCTCCGTCTCA 58.288 50.000 0.00 0.00 0.00 3.27
440 441 2.498078 AGATGAAAGAACCCTCCGTCTC 59.502 50.000 0.00 0.00 0.00 3.36
441 442 2.498078 GAGATGAAAGAACCCTCCGTCT 59.502 50.000 0.00 0.00 0.00 4.18
442 443 2.233922 TGAGATGAAAGAACCCTCCGTC 59.766 50.000 0.00 0.00 0.00 4.79
443 444 2.028020 GTGAGATGAAAGAACCCTCCGT 60.028 50.000 0.00 0.00 0.00 4.69
444 445 2.234908 AGTGAGATGAAAGAACCCTCCG 59.765 50.000 0.00 0.00 0.00 4.63
445 446 3.261897 TGAGTGAGATGAAAGAACCCTCC 59.738 47.826 0.00 0.00 0.00 4.30
446 447 4.249661 GTGAGTGAGATGAAAGAACCCTC 58.750 47.826 0.00 0.00 0.00 4.30
447 448 3.648067 TGTGAGTGAGATGAAAGAACCCT 59.352 43.478 0.00 0.00 0.00 4.34
448 449 3.999663 CTGTGAGTGAGATGAAAGAACCC 59.000 47.826 0.00 0.00 0.00 4.11
449 450 3.434984 GCTGTGAGTGAGATGAAAGAACC 59.565 47.826 0.00 0.00 0.00 3.62
450 451 4.314121 AGCTGTGAGTGAGATGAAAGAAC 58.686 43.478 0.00 0.00 0.00 3.01
451 452 4.613925 AGCTGTGAGTGAGATGAAAGAA 57.386 40.909 0.00 0.00 0.00 2.52
452 453 5.012893 TCTAGCTGTGAGTGAGATGAAAGA 58.987 41.667 0.00 0.00 0.00 2.52
453 454 5.101628 GTCTAGCTGTGAGTGAGATGAAAG 58.898 45.833 0.00 0.00 0.00 2.62
454 455 4.524328 TGTCTAGCTGTGAGTGAGATGAAA 59.476 41.667 0.00 0.00 0.00 2.69
455 456 4.082125 TGTCTAGCTGTGAGTGAGATGAA 58.918 43.478 0.00 0.00 0.00 2.57
456 457 3.690460 TGTCTAGCTGTGAGTGAGATGA 58.310 45.455 0.00 0.00 0.00 2.92
457 458 4.446994 TTGTCTAGCTGTGAGTGAGATG 57.553 45.455 0.00 0.00 0.00 2.90
458 459 4.769488 TCTTTGTCTAGCTGTGAGTGAGAT 59.231 41.667 0.00 0.00 0.00 2.75
459 460 4.022762 GTCTTTGTCTAGCTGTGAGTGAGA 60.023 45.833 0.00 0.00 0.00 3.27
460 461 4.233789 GTCTTTGTCTAGCTGTGAGTGAG 58.766 47.826 0.00 0.00 0.00 3.51
461 462 3.304726 CGTCTTTGTCTAGCTGTGAGTGA 60.305 47.826 0.00 0.00 0.00 3.41
462 463 2.983136 CGTCTTTGTCTAGCTGTGAGTG 59.017 50.000 0.00 0.00 0.00 3.51
463 464 2.608261 GCGTCTTTGTCTAGCTGTGAGT 60.608 50.000 0.00 0.00 0.00 3.41
464 465 1.989165 GCGTCTTTGTCTAGCTGTGAG 59.011 52.381 0.00 0.00 0.00 3.51
465 466 1.666023 CGCGTCTTTGTCTAGCTGTGA 60.666 52.381 0.00 0.00 0.00 3.58
466 467 0.710567 CGCGTCTTTGTCTAGCTGTG 59.289 55.000 0.00 0.00 0.00 3.66
467 468 1.009389 GCGCGTCTTTGTCTAGCTGT 61.009 55.000 8.43 0.00 0.00 4.40
468 469 1.687494 GGCGCGTCTTTGTCTAGCTG 61.687 60.000 8.43 0.00 0.00 4.24
469 470 1.446272 GGCGCGTCTTTGTCTAGCT 60.446 57.895 8.43 0.00 0.00 3.32
470 471 1.289109 TTGGCGCGTCTTTGTCTAGC 61.289 55.000 13.81 0.00 0.00 3.42
471 472 1.061131 CATTGGCGCGTCTTTGTCTAG 59.939 52.381 13.81 0.00 0.00 2.43
472 473 1.075542 CATTGGCGCGTCTTTGTCTA 58.924 50.000 13.81 0.00 0.00 2.59
473 474 1.868997 CATTGGCGCGTCTTTGTCT 59.131 52.632 13.81 0.00 0.00 3.41
474 475 1.797537 GCATTGGCGCGTCTTTGTC 60.798 57.895 13.81 2.51 0.00 3.18
475 476 2.255252 GCATTGGCGCGTCTTTGT 59.745 55.556 13.81 0.00 0.00 2.83
476 477 2.504681 GGCATTGGCGCGTCTTTG 60.505 61.111 13.81 10.80 42.47 2.77
477 478 3.747976 GGGCATTGGCGCGTCTTT 61.748 61.111 13.81 0.00 43.41 2.52
484 485 1.878656 TTTTTACGGGGGCATTGGCG 61.879 55.000 3.93 0.00 42.47 5.69
485 486 1.976112 TTTTTACGGGGGCATTGGC 59.024 52.632 0.70 0.70 40.13 4.52
521 522 7.656707 AAAATATTTTGAAGCTCAACGCATT 57.343 28.000 12.62 0.00 42.61 3.56
557 558 3.488310 GCTCGGAAATCTCGCGTTTTATA 59.512 43.478 5.77 0.00 0.00 0.98
558 559 2.284417 GCTCGGAAATCTCGCGTTTTAT 59.716 45.455 5.77 0.00 0.00 1.40
563 564 2.537792 TTCGCTCGGAAATCTCGCGT 62.538 55.000 5.77 0.00 43.78 6.01
582 583 2.738314 GGTAGAAAATTGCACCGTACGT 59.262 45.455 15.21 0.00 0.00 3.57
587 588 0.179174 GCGGGTAGAAAATTGCACCG 60.179 55.000 2.52 2.52 42.47 4.94
590 591 1.810151 GACAGCGGGTAGAAAATTGCA 59.190 47.619 0.00 0.00 0.00 4.08
599 600 3.760035 AGCGGTGACAGCGGGTAG 61.760 66.667 26.56 0.72 39.82 3.18
611 612 0.176680 CATCCAGAAGTAGCAGCGGT 59.823 55.000 0.00 0.00 0.00 5.68
629 630 1.173913 TGAGATCGGACGCTTCTTCA 58.826 50.000 0.00 0.00 0.00 3.02
653 654 3.335534 AACGCAACGTCGCTCCAC 61.336 61.111 0.00 0.00 39.99 4.02
671 672 2.894307 AGGAAGCAACGCGAATAAAC 57.106 45.000 15.93 0.00 0.00 2.01
672 673 3.907894 AAAGGAAGCAACGCGAATAAA 57.092 38.095 15.93 0.00 0.00 1.40
675 676 1.930371 GCAAAAGGAAGCAACGCGAAT 60.930 47.619 15.93 0.00 0.00 3.34
676 677 0.593773 GCAAAAGGAAGCAACGCGAA 60.594 50.000 15.93 0.00 0.00 4.70
680 691 0.589223 TACCGCAAAAGGAAGCAACG 59.411 50.000 0.00 0.00 34.73 4.10
683 694 1.877443 GTCTTACCGCAAAAGGAAGCA 59.123 47.619 0.00 0.00 34.73 3.91
685 696 2.484264 CCTGTCTTACCGCAAAAGGAAG 59.516 50.000 0.00 0.00 34.73 3.46
698 709 0.735978 CACGTGCGATGCCTGTCTTA 60.736 55.000 0.82 0.00 0.00 2.10
699 710 2.029288 CACGTGCGATGCCTGTCTT 61.029 57.895 0.82 0.00 0.00 3.01
705 716 3.788766 GGTGTCACGTGCGATGCC 61.789 66.667 11.67 4.76 0.00 4.40
721 732 4.896028 TTGTTTGTGTGCGCGCGG 62.896 61.111 33.06 13.66 0.00 6.46
722 733 1.806251 AATTTGTTTGTGTGCGCGCG 61.806 50.000 28.44 28.44 0.00 6.86
723 734 1.124462 TAATTTGTTTGTGTGCGCGC 58.876 45.000 27.26 27.26 0.00 6.86
727 738 3.696898 TCGGTGTAATTTGTTTGTGTGC 58.303 40.909 0.00 0.00 0.00 4.57
729 740 5.120399 TCTCTCGGTGTAATTTGTTTGTGT 58.880 37.500 0.00 0.00 0.00 3.72
753 764 3.562141 TGATCCATCGACGTGTTGTTTTT 59.438 39.130 0.00 0.00 0.00 1.94
755 766 2.761559 TGATCCATCGACGTGTTGTTT 58.238 42.857 0.00 0.00 0.00 2.83
756 767 2.448926 TGATCCATCGACGTGTTGTT 57.551 45.000 0.00 0.00 0.00 2.83
757 768 2.094234 TGATGATCCATCGACGTGTTGT 60.094 45.455 0.00 0.00 43.14 3.32
769 780 1.708341 TCGGCATCTCTGATGATCCA 58.292 50.000 11.25 0.00 0.00 3.41
814 828 2.825387 TGCGGTGGAGCATGCATC 60.825 61.111 21.98 13.95 39.99 3.91
841 855 2.980233 GGCTGCGAGGTTGCAACT 60.980 61.111 27.64 14.56 45.74 3.16
842 856 3.259425 CTGGCTGCGAGGTTGCAAC 62.259 63.158 21.59 21.59 45.74 4.17
843 857 2.979676 CTGGCTGCGAGGTTGCAA 60.980 61.111 3.49 0.00 45.74 4.08
844 858 3.889134 CTCTGGCTGCGAGGTTGCA 62.889 63.158 11.81 0.00 43.95 4.08
845 859 3.123620 CTCTGGCTGCGAGGTTGC 61.124 66.667 11.81 0.00 0.00 4.17
846 860 1.447489 CTCTCTGGCTGCGAGGTTG 60.447 63.158 11.81 3.36 0.00 3.77
847 861 2.977178 CTCTCTGGCTGCGAGGTT 59.023 61.111 11.81 0.00 0.00 3.50
848 862 3.768922 GCTCTCTGGCTGCGAGGT 61.769 66.667 11.81 0.00 0.00 3.85
849 863 4.527583 GGCTCTCTGGCTGCGAGG 62.528 72.222 11.81 3.15 38.32 4.63
850 864 4.869440 CGGCTCTCTGGCTGCGAG 62.869 72.222 5.20 5.20 39.32 5.03
854 868 2.588314 GATGCGGCTCTCTGGCTG 60.588 66.667 0.00 0.00 41.16 4.85
855 869 3.859414 GGATGCGGCTCTCTGGCT 61.859 66.667 0.00 0.00 39.32 4.75
856 870 3.687321 TTGGATGCGGCTCTCTGGC 62.687 63.158 0.00 0.00 37.94 4.85
857 871 1.817099 GTTGGATGCGGCTCTCTGG 60.817 63.158 0.00 0.00 0.00 3.86
858 872 0.392193 AAGTTGGATGCGGCTCTCTG 60.392 55.000 0.00 0.00 0.00 3.35
899 968 4.385748 GCTGCAATAAACAAGTGTAAAGGC 59.614 41.667 0.00 0.00 0.00 4.35
966 1036 4.560128 CATGTAGATGGAACCGATTCGAT 58.440 43.478 7.83 0.00 36.10 3.59
1094 1165 3.058160 CGGAGCAGGTGGCCTTTG 61.058 66.667 3.32 0.24 46.50 2.77
1111 1182 2.988010 TGTGATATGGTGAGGAGCAC 57.012 50.000 0.00 0.00 46.98 4.40
1112 1183 3.106827 TCTTGTGATATGGTGAGGAGCA 58.893 45.455 0.00 0.00 0.00 4.26
1119 1190 2.905075 TCGGCTTCTTGTGATATGGTG 58.095 47.619 0.00 0.00 0.00 4.17
1202 1277 3.633986 GGAGGCCATATTGGTTTCTTGAG 59.366 47.826 5.01 0.00 40.46 3.02
1215 1338 0.623723 GGTTCTGGTTGGAGGCCATA 59.376 55.000 5.01 0.00 35.19 2.74
1293 1420 1.539065 GCAGAGCACACACTACACACT 60.539 52.381 0.00 0.00 0.00 3.55
1341 1480 2.564947 ACAGACAGAACATCTCAGACCC 59.435 50.000 0.00 0.00 0.00 4.46
1343 1482 3.993081 CCAACAGACAGAACATCTCAGAC 59.007 47.826 0.00 0.00 0.00 3.51
1454 1593 3.626924 GTGGCCTCGGTGGTCTGT 61.627 66.667 3.32 0.00 42.07 3.41
1455 1594 4.394712 GGTGGCCTCGGTGGTCTG 62.395 72.222 3.32 0.00 42.07 3.51
1456 1595 4.954118 TGGTGGCCTCGGTGGTCT 62.954 66.667 3.32 0.00 42.07 3.85
1457 1596 3.901797 CTTGGTGGCCTCGGTGGTC 62.902 68.421 3.32 0.00 41.87 4.02
1458 1597 3.953775 CTTGGTGGCCTCGGTGGT 61.954 66.667 3.32 0.00 38.35 4.16
1460 1599 4.641645 TGCTTGGTGGCCTCGGTG 62.642 66.667 3.32 0.00 0.00 4.94
1461 1600 4.335647 CTGCTTGGTGGCCTCGGT 62.336 66.667 3.32 0.00 0.00 4.69
1462 1601 3.551496 TTCTGCTTGGTGGCCTCGG 62.551 63.158 3.32 0.00 0.00 4.63
1463 1602 2.032528 TTCTGCTTGGTGGCCTCG 59.967 61.111 3.32 0.00 0.00 4.63
1464 1603 1.676967 CCTTCTGCTTGGTGGCCTC 60.677 63.158 3.32 0.00 0.00 4.70
1465 1604 2.437897 CCTTCTGCTTGGTGGCCT 59.562 61.111 3.32 0.00 0.00 5.19
1466 1605 3.376918 GCCTTCTGCTTGGTGGCC 61.377 66.667 0.00 0.00 37.81 5.36
1467 1606 3.376918 GGCCTTCTGCTTGGTGGC 61.377 66.667 0.00 0.00 42.56 5.01
1468 1607 3.058160 CGGCCTTCTGCTTGGTGG 61.058 66.667 0.00 0.00 40.92 4.61
1469 1608 3.058160 CCGGCCTTCTGCTTGGTG 61.058 66.667 0.00 0.00 40.92 4.17
1473 1612 4.767255 CTCGCCGGCCTTCTGCTT 62.767 66.667 23.46 0.00 40.92 3.91
1535 1674 3.121030 CCGGCCTTCTGCTTCGTG 61.121 66.667 0.00 0.00 40.92 4.35
1538 1677 4.760047 TCGCCGGCCTTCTGCTTC 62.760 66.667 23.46 0.00 40.92 3.86
1645 1817 3.612247 CTGCCGGTCTGGTCCTTGG 62.612 68.421 1.90 0.00 41.21 3.61
1682 1854 0.255318 CCTTCTGCTTGGCCATCTCT 59.745 55.000 6.09 0.00 0.00 3.10
1710 1915 4.379243 CTTGGCAGCCTCGGTCGT 62.379 66.667 14.15 0.00 0.00 4.34
1736 1941 3.506096 TACTGCGCCGTCTCCGAG 61.506 66.667 8.05 0.00 35.63 4.63
1919 2163 1.228154 GGTGGTGGTGGTGTCCTTC 60.228 63.158 0.00 0.00 0.00 3.46
1925 2169 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1926 2170 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1927 2171 3.790416 CTGGTGGTGGTGGTGGTGG 62.790 68.421 0.00 0.00 0.00 4.61
1993 2244 2.549282 CCGCGAACGACCAAACAG 59.451 61.111 8.23 0.00 43.93 3.16
2066 2331 5.957842 ACATCAAATCGAAGGCAAACTTA 57.042 34.783 0.00 0.00 40.21 2.24
2117 2386 4.207891 AGCACATGGATCGTAACTCTTT 57.792 40.909 0.00 0.00 0.00 2.52
2119 2388 3.895232 AAGCACATGGATCGTAACTCT 57.105 42.857 0.00 0.00 0.00 3.24
2126 2400 1.167851 ACACCAAAGCACATGGATCG 58.832 50.000 9.15 1.11 40.56 3.69
2136 2410 5.448632 CCTCGTTATCCATTTACACCAAAGC 60.449 44.000 0.00 0.00 0.00 3.51
2191 2465 6.898912 ACTACCGGAATAAAGAAAATCGAC 57.101 37.500 9.46 0.00 0.00 4.20
2203 2477 5.184479 CCGAGGAATATGAACTACCGGAATA 59.816 44.000 9.46 0.00 36.86 1.75
2204 2478 4.021368 CCGAGGAATATGAACTACCGGAAT 60.021 45.833 9.46 0.00 36.86 3.01
2205 2479 3.319972 CCGAGGAATATGAACTACCGGAA 59.680 47.826 9.46 0.00 36.86 4.30
2208 2482 2.889045 TCCCGAGGAATATGAACTACCG 59.111 50.000 0.00 0.00 0.00 4.02
2209 2483 4.950205 TTCCCGAGGAATATGAACTACC 57.050 45.455 1.68 0.00 36.71 3.18
2211 2485 9.720769 GATAATTTTCCCGAGGAATATGAACTA 57.279 33.333 6.25 0.00 41.71 2.24
2213 2487 8.391075 TGATAATTTTCCCGAGGAATATGAAC 57.609 34.615 6.25 1.70 41.71 3.18
2215 2489 7.996066 TGTTGATAATTTTCCCGAGGAATATGA 59.004 33.333 6.25 2.07 41.71 2.15
2216 2490 8.165239 TGTTGATAATTTTCCCGAGGAATATG 57.835 34.615 6.25 0.00 41.71 1.78
2217 2491 8.760980 TTGTTGATAATTTTCCCGAGGAATAT 57.239 30.769 6.25 4.92 41.71 1.28
2219 2493 7.475137 TTTGTTGATAATTTTCCCGAGGAAT 57.525 32.000 6.25 0.00 41.71 3.01
2220 2494 6.902771 TTTGTTGATAATTTTCCCGAGGAA 57.097 33.333 1.68 1.68 40.27 3.36
2221 2495 6.902771 TTTTGTTGATAATTTTCCCGAGGA 57.097 33.333 0.00 0.00 0.00 3.71
2222 2496 7.816995 TGAATTTTGTTGATAATTTTCCCGAGG 59.183 33.333 0.00 0.00 0.00 4.63
2284 3107 4.365514 AGTGGTGTTGTGAACATCCATA 57.634 40.909 11.41 0.00 41.87 2.74
2290 3113 5.707242 TTTTTGTAGTGGTGTTGTGAACA 57.293 34.783 0.00 0.00 39.52 3.18
2291 3114 6.254804 GGAATTTTTGTAGTGGTGTTGTGAAC 59.745 38.462 0.00 0.00 0.00 3.18
2292 3115 6.071334 TGGAATTTTTGTAGTGGTGTTGTGAA 60.071 34.615 0.00 0.00 0.00 3.18
2294 3117 5.655488 TGGAATTTTTGTAGTGGTGTTGTG 58.345 37.500 0.00 0.00 0.00 3.33
2295 3118 5.923733 TGGAATTTTTGTAGTGGTGTTGT 57.076 34.783 0.00 0.00 0.00 3.32
2299 3122 8.430801 TTTTGATTGGAATTTTTGTAGTGGTG 57.569 30.769 0.00 0.00 0.00 4.17
2301 3124 9.881529 CAATTTTGATTGGAATTTTTGTAGTGG 57.118 29.630 0.00 0.00 0.00 4.00
2323 3146 9.645059 CGATAGAGATTATGTGTATGTCCAATT 57.355 33.333 0.00 0.00 39.76 2.32
2324 3147 7.761704 GCGATAGAGATTATGTGTATGTCCAAT 59.238 37.037 0.00 0.00 39.76 3.16
2325 3148 7.039714 AGCGATAGAGATTATGTGTATGTCCAA 60.040 37.037 0.00 0.00 39.76 3.53
2326 3149 6.434340 AGCGATAGAGATTATGTGTATGTCCA 59.566 38.462 0.00 0.00 39.76 4.02
2327 3150 6.857956 AGCGATAGAGATTATGTGTATGTCC 58.142 40.000 0.00 0.00 39.76 4.02
2328 3151 8.670135 AGTAGCGATAGAGATTATGTGTATGTC 58.330 37.037 0.00 0.00 39.76 3.06
2329 3152 8.568676 AGTAGCGATAGAGATTATGTGTATGT 57.431 34.615 0.00 0.00 39.76 2.29
2330 3153 8.126074 GGAGTAGCGATAGAGATTATGTGTATG 58.874 40.741 0.00 0.00 39.76 2.39
2331 3154 8.050325 AGGAGTAGCGATAGAGATTATGTGTAT 58.950 37.037 0.00 0.00 39.76 2.29
2332 3155 7.395617 AGGAGTAGCGATAGAGATTATGTGTA 58.604 38.462 0.00 0.00 39.76 2.90
2333 3156 6.242396 AGGAGTAGCGATAGAGATTATGTGT 58.758 40.000 0.00 0.00 39.76 3.72
2334 3157 6.751514 AGGAGTAGCGATAGAGATTATGTG 57.248 41.667 0.00 0.00 39.76 3.21
2342 3165 9.705471 CGTATTTTTATAGGAGTAGCGATAGAG 57.295 37.037 0.00 0.00 39.76 2.43
2343 3166 9.440773 TCGTATTTTTATAGGAGTAGCGATAGA 57.559 33.333 0.00 0.00 39.76 1.98
2344 3167 9.705471 CTCGTATTTTTATAGGAGTAGCGATAG 57.295 37.037 0.00 0.00 35.47 2.08
2345 3168 9.224267 ACTCGTATTTTTATAGGAGTAGCGATA 57.776 33.333 15.13 0.00 45.12 2.92
2346 3169 8.108551 ACTCGTATTTTTATAGGAGTAGCGAT 57.891 34.615 15.13 0.00 45.12 4.58
2349 3172 7.924947 ACCAACTCGTATTTTTATAGGAGTAGC 59.075 37.037 16.37 0.00 45.78 3.58
2360 3183 4.217550 CCATCACCACCAACTCGTATTTTT 59.782 41.667 0.00 0.00 0.00 1.94
2716 4143 6.287589 AGAATGAGACATAAGAGGTTTCGT 57.712 37.500 0.00 0.00 0.00 3.85
2728 4155 5.163642 GCTTCTGCATCAAAGAATGAGACAT 60.164 40.000 7.58 0.00 42.53 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.