Multiple sequence alignment - TraesCS1B01G380200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G380200 chr1B 100.000 2312 0 0 1 2312 613230814 613233125 0.000000e+00 4270.0
1 TraesCS1B01G380200 chr1B 95.978 547 22 0 767 1313 608042989 608042443 0.000000e+00 889.0
2 TraesCS1B01G380200 chr1B 95.963 545 22 0 769 1313 608335858 608335314 0.000000e+00 885.0
3 TraesCS1B01G380200 chr1B 93.784 547 30 1 767 1313 610893033 610893575 0.000000e+00 819.0
4 TraesCS1B01G380200 chr1B 84.348 460 57 13 1 449 7533973 7533518 9.810000e-119 436.0
5 TraesCS1B01G380200 chr1B 89.691 291 27 3 158 447 605917718 605918006 3.630000e-98 368.0
6 TraesCS1B01G380200 chr1A 86.850 1749 121 49 643 2309 543928011 543929732 0.000000e+00 1855.0
7 TraesCS1B01G380200 chr1A 94.698 547 25 1 767 1313 541343593 541344135 0.000000e+00 846.0
8 TraesCS1B01G380200 chr1A 94.150 547 27 2 767 1313 541461014 541460473 0.000000e+00 828.0
9 TraesCS1B01G380200 chr1D 93.673 727 34 6 608 1329 447756611 447757330 0.000000e+00 1077.0
10 TraesCS1B01G380200 chr1D 94.150 547 28 1 767 1313 445367044 445366502 0.000000e+00 830.0
11 TraesCS1B01G380200 chr1D 92.870 547 35 1 767 1313 355827857 355828399 0.000000e+00 791.0
12 TraesCS1B01G380200 chr1D 85.714 651 58 17 1689 2312 447757589 447758231 0.000000e+00 654.0
13 TraesCS1B01G380200 chr1D 86.733 505 46 14 795 1284 394491919 394491421 2.020000e-150 542.0
14 TraesCS1B01G380200 chr1D 89.109 202 13 2 1350 1550 447757381 447757574 2.300000e-60 243.0
15 TraesCS1B01G380200 chr7B 93.187 455 20 4 1 446 439299370 439299822 0.000000e+00 658.0
16 TraesCS1B01G380200 chr7B 91.898 469 18 11 1 449 125500347 125500815 2.510000e-179 638.0
17 TraesCS1B01G380200 chr7B 90.632 459 33 5 1 449 683972780 683972322 3.290000e-168 601.0
18 TraesCS1B01G380200 chr7B 88.913 469 30 12 1 449 34687988 34687522 2.010000e-155 558.0
19 TraesCS1B01G380200 chr7B 93.103 58 1 2 466 521 439299869 439299925 5.290000e-12 82.4
20 TraesCS1B01G380200 chr7B 100.000 30 0 0 500 529 488366024 488365995 3.210000e-04 56.5
21 TraesCS1B01G380200 chr2B 92.625 461 22 3 1 449 764839841 764840301 0.000000e+00 652.0
22 TraesCS1B01G380200 chr2B 92.905 451 22 3 1 441 793483570 793484020 0.000000e+00 647.0
23 TraesCS1B01G380200 chr2B 91.667 456 18 8 1 446 70845207 70845652 4.220000e-172 614.0
24 TraesCS1B01G380200 chr2B 88.889 99 6 2 518 611 275240240 275240338 1.450000e-22 117.0
25 TraesCS1B01G380200 chr2D 91.048 458 30 4 1 449 14228609 14228154 1.960000e-170 608.0
26 TraesCS1B01G380200 chr2D 89.109 101 5 6 515 610 519832566 519832665 1.120000e-23 121.0
27 TraesCS1B01G380200 chr2D 88.000 100 9 2 515 611 550210338 550210239 5.220000e-22 115.0
28 TraesCS1B01G380200 chr2D 87.013 77 9 1 450 525 563800900 563800976 4.090000e-13 86.1
29 TraesCS1B01G380200 chr7D 94.416 394 13 3 1 385 442676487 442676880 4.250000e-167 597.0
30 TraesCS1B01G380200 chr7D 87.846 469 34 9 1 449 1007713 1008178 1.570000e-146 529.0
31 TraesCS1B01G380200 chr6D 90.234 471 22 13 1 453 175150095 175149631 5.500000e-166 593.0
32 TraesCS1B01G380200 chr5D 89.978 459 35 3 1 449 458909036 458908579 1.190000e-162 582.0
33 TraesCS1B01G380200 chr5D 89.000 100 6 3 516 610 136526127 136526028 4.040000e-23 119.0
34 TraesCS1B01G380200 chr3B 86.752 468 41 9 1 449 773765540 773765075 3.430000e-138 501.0
35 TraesCS1B01G380200 chr3D 92.776 263 10 3 1 254 380294601 380294863 2.810000e-99 372.0
36 TraesCS1B01G380200 chr3D 90.000 100 6 3 515 610 274800282 274800183 2.410000e-25 126.0
37 TraesCS1B01G380200 chr6B 91.919 99 5 2 516 611 318823197 318823295 4.010000e-28 135.0
38 TraesCS1B01G380200 chr6B 91.089 101 4 2 516 611 318934831 318934931 5.180000e-27 132.0
39 TraesCS1B01G380200 chr2A 91.089 101 5 2 516 612 239835005 239835105 1.440000e-27 134.0
40 TraesCS1B01G380200 chr2A 88.235 68 8 0 450 517 768611695 768611762 5.290000e-12 82.4
41 TraesCS1B01G380200 chr3A 90.291 103 4 6 515 612 735820458 735820559 1.860000e-26 130.0
42 TraesCS1B01G380200 chr4A 97.059 34 1 0 486 519 513346351 513346318 8.920000e-05 58.4
43 TraesCS1B01G380200 chrUn 100.000 28 0 0 1053 1080 363438243 363438216 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G380200 chr1B 613230814 613233125 2311 False 4270.0 4270 100.000000 1 2312 1 chr1B.!!$F3 2311
1 TraesCS1B01G380200 chr1B 608042443 608042989 546 True 889.0 889 95.978000 767 1313 1 chr1B.!!$R2 546
2 TraesCS1B01G380200 chr1B 608335314 608335858 544 True 885.0 885 95.963000 769 1313 1 chr1B.!!$R3 544
3 TraesCS1B01G380200 chr1B 610893033 610893575 542 False 819.0 819 93.784000 767 1313 1 chr1B.!!$F2 546
4 TraesCS1B01G380200 chr1A 543928011 543929732 1721 False 1855.0 1855 86.850000 643 2309 1 chr1A.!!$F2 1666
5 TraesCS1B01G380200 chr1A 541343593 541344135 542 False 846.0 846 94.698000 767 1313 1 chr1A.!!$F1 546
6 TraesCS1B01G380200 chr1A 541460473 541461014 541 True 828.0 828 94.150000 767 1313 1 chr1A.!!$R1 546
7 TraesCS1B01G380200 chr1D 445366502 445367044 542 True 830.0 830 94.150000 767 1313 1 chr1D.!!$R2 546
8 TraesCS1B01G380200 chr1D 355827857 355828399 542 False 791.0 791 92.870000 767 1313 1 chr1D.!!$F1 546
9 TraesCS1B01G380200 chr1D 447756611 447758231 1620 False 658.0 1077 89.498667 608 2312 3 chr1D.!!$F2 1704
10 TraesCS1B01G380200 chr7B 439299370 439299925 555 False 370.2 658 93.145000 1 521 2 chr7B.!!$F2 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 247 0.106819 GGCTGGAGACGGTCTACCTA 60.107 60.0 17.53 0.0 38.67 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 1949 0.169672 CAGCCTGAATCCAGCAAACG 59.83 55.0 0.0 0.0 39.07 3.6 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 0.322816 GGCTTCCTCATCCAGCAACA 60.323 55.000 0.00 0.00 35.05 3.33
54 55 2.401766 CCTCATCCAGCAACACCGC 61.402 63.158 0.00 0.00 0.00 5.68
83 84 1.000827 CCTCATCTTCGGAGTCCATCG 60.001 57.143 10.49 0.00 0.00 3.84
84 85 0.385751 TCATCTTCGGAGTCCATCGC 59.614 55.000 10.49 0.00 0.00 4.58
116 117 0.464735 TTCACCGAACACCTTGTGGG 60.465 55.000 0.00 0.00 37.94 4.61
117 118 2.203294 ACCGAACACCTTGTGGGC 60.203 61.111 0.00 0.00 37.94 5.36
118 119 3.353836 CCGAACACCTTGTGGGCG 61.354 66.667 0.00 2.21 37.94 6.13
119 120 2.280524 CGAACACCTTGTGGGCGA 60.281 61.111 0.00 0.00 37.94 5.54
125 126 2.584608 CCTTGTGGGCGAGGTAGG 59.415 66.667 0.00 0.00 40.67 3.18
126 127 2.291043 CCTTGTGGGCGAGGTAGGT 61.291 63.158 0.00 0.00 40.67 3.08
127 128 0.974010 CCTTGTGGGCGAGGTAGGTA 60.974 60.000 0.00 0.00 40.67 3.08
134 135 1.143401 GCGAGGTAGGTACAAGCCC 59.857 63.158 0.00 0.00 0.00 5.19
171 172 3.733960 GCGGCCGGAAAAGGTGTC 61.734 66.667 29.38 1.03 0.00 3.67
219 229 2.924290 CGACGCTCCTTCTTTTTCTAGG 59.076 50.000 0.00 0.00 0.00 3.02
237 247 0.106819 GGCTGGAGACGGTCTACCTA 60.107 60.000 17.53 0.00 38.67 3.08
277 287 4.864334 GCCGGGATCAGCAGGGTG 62.864 72.222 2.18 0.00 0.00 4.61
278 288 4.181010 CCGGGATCAGCAGGGTGG 62.181 72.222 0.00 0.00 0.00 4.61
279 289 4.864334 CGGGATCAGCAGGGTGGC 62.864 72.222 0.00 0.00 0.00 5.01
280 290 4.864334 GGGATCAGCAGGGTGGCG 62.864 72.222 0.00 0.00 39.27 5.69
281 291 4.864334 GGATCAGCAGGGTGGCGG 62.864 72.222 0.00 0.00 39.27 6.13
309 319 4.570874 GGGGCAGGAGGGCGAATC 62.571 72.222 0.00 0.00 44.56 2.52
310 320 3.483869 GGGCAGGAGGGCGAATCT 61.484 66.667 0.00 0.00 44.56 2.40
311 321 2.203126 GGCAGGAGGGCGAATCTG 60.203 66.667 0.00 0.00 33.57 2.90
312 322 2.203126 GCAGGAGGGCGAATCTGG 60.203 66.667 0.00 0.00 0.00 3.86
313 323 2.203126 CAGGAGGGCGAATCTGGC 60.203 66.667 0.00 0.00 0.00 4.85
321 331 3.781307 CGAATCTGGCCGGGTGGA 61.781 66.667 12.87 0.00 37.49 4.02
322 332 2.919043 GAATCTGGCCGGGTGGAT 59.081 61.111 12.87 0.00 37.49 3.41
323 333 1.227383 GAATCTGGCCGGGTGGATT 59.773 57.895 12.87 3.54 37.49 3.01
324 334 1.076777 AATCTGGCCGGGTGGATTG 60.077 57.895 12.87 0.00 37.49 2.67
325 335 1.570857 AATCTGGCCGGGTGGATTGA 61.571 55.000 12.87 0.00 37.49 2.57
326 336 2.270874 ATCTGGCCGGGTGGATTGAC 62.271 60.000 12.87 0.00 37.49 3.18
327 337 2.933287 TGGCCGGGTGGATTGACT 60.933 61.111 2.18 0.00 37.49 3.41
328 338 2.355115 GGCCGGGTGGATTGACTT 59.645 61.111 2.18 0.00 37.49 3.01
329 339 1.304134 GGCCGGGTGGATTGACTTT 60.304 57.895 2.18 0.00 37.49 2.66
330 340 0.898326 GGCCGGGTGGATTGACTTTT 60.898 55.000 2.18 0.00 37.49 2.27
331 341 0.526211 GCCGGGTGGATTGACTTTTC 59.474 55.000 2.18 0.00 37.49 2.29
332 342 0.802494 CCGGGTGGATTGACTTTTCG 59.198 55.000 0.00 0.00 37.49 3.46
333 343 0.168128 CGGGTGGATTGACTTTTCGC 59.832 55.000 0.00 0.00 0.00 4.70
334 344 1.534729 GGGTGGATTGACTTTTCGCT 58.465 50.000 0.00 0.00 0.00 4.93
335 345 1.886542 GGGTGGATTGACTTTTCGCTT 59.113 47.619 0.00 0.00 0.00 4.68
336 346 2.351738 GGGTGGATTGACTTTTCGCTTG 60.352 50.000 0.00 0.00 0.00 4.01
337 347 2.293399 GGTGGATTGACTTTTCGCTTGT 59.707 45.455 0.00 0.00 0.00 3.16
338 348 3.555518 GTGGATTGACTTTTCGCTTGTC 58.444 45.455 0.00 0.00 0.00 3.18
339 349 3.003275 GTGGATTGACTTTTCGCTTGTCA 59.997 43.478 0.00 0.00 38.71 3.58
343 353 4.630894 TTGACTTTTCGCTTGTCAATGT 57.369 36.364 0.00 0.00 43.15 2.71
344 354 3.951306 TGACTTTTCGCTTGTCAATGTG 58.049 40.909 0.00 0.00 37.71 3.21
345 355 3.243035 TGACTTTTCGCTTGTCAATGTGG 60.243 43.478 0.00 0.00 37.71 4.17
346 356 2.053627 CTTTTCGCTTGTCAATGTGGC 58.946 47.619 0.00 0.00 0.00 5.01
347 357 0.313672 TTTCGCTTGTCAATGTGGCC 59.686 50.000 0.00 0.00 0.00 5.36
348 358 1.523154 TTCGCTTGTCAATGTGGCCC 61.523 55.000 0.00 0.00 0.00 5.80
349 359 2.973082 GCTTGTCAATGTGGCCCC 59.027 61.111 0.00 0.00 0.00 5.80
350 360 1.907807 GCTTGTCAATGTGGCCCCA 60.908 57.895 0.00 0.00 0.00 4.96
351 361 1.880819 GCTTGTCAATGTGGCCCCAG 61.881 60.000 0.00 0.00 0.00 4.45
352 362 1.228831 TTGTCAATGTGGCCCCAGG 60.229 57.895 0.00 0.00 0.00 4.45
353 363 1.724148 TTGTCAATGTGGCCCCAGGA 61.724 55.000 0.00 0.00 0.00 3.86
354 364 1.076549 GTCAATGTGGCCCCAGGAA 59.923 57.895 0.00 0.00 0.00 3.36
355 365 1.076549 TCAATGTGGCCCCAGGAAC 59.923 57.895 0.00 0.00 0.00 3.62
356 366 1.228831 CAATGTGGCCCCAGGAACA 60.229 57.895 0.00 0.00 0.00 3.18
357 367 1.228862 AATGTGGCCCCAGGAACAC 60.229 57.895 0.00 0.00 34.35 3.32
358 368 1.729267 AATGTGGCCCCAGGAACACT 61.729 55.000 0.00 0.00 34.67 3.55
359 369 1.729267 ATGTGGCCCCAGGAACACTT 61.729 55.000 0.00 3.82 34.67 3.16
360 370 1.152546 GTGGCCCCAGGAACACTTT 60.153 57.895 0.00 0.00 32.21 2.66
361 371 0.759060 GTGGCCCCAGGAACACTTTT 60.759 55.000 0.00 0.00 32.21 2.27
362 372 0.469144 TGGCCCCAGGAACACTTTTC 60.469 55.000 0.00 0.00 0.00 2.29
363 373 1.524008 GGCCCCAGGAACACTTTTCG 61.524 60.000 0.00 0.00 0.00 3.46
364 374 1.956802 CCCCAGGAACACTTTTCGC 59.043 57.895 0.00 0.00 0.00 4.70
365 375 0.537371 CCCCAGGAACACTTTTCGCT 60.537 55.000 0.00 0.00 0.00 4.93
366 376 1.318576 CCCAGGAACACTTTTCGCTT 58.681 50.000 0.00 0.00 0.00 4.68
367 377 1.001378 CCCAGGAACACTTTTCGCTTG 60.001 52.381 0.00 0.00 0.00 4.01
368 378 1.600413 CCAGGAACACTTTTCGCTTGC 60.600 52.381 0.00 0.00 0.00 4.01
369 379 0.307760 AGGAACACTTTTCGCTTGCG 59.692 50.000 8.87 8.87 0.00 4.85
370 380 1.268778 GGAACACTTTTCGCTTGCGC 61.269 55.000 10.38 0.00 0.00 6.09
371 381 1.268778 GAACACTTTTCGCTTGCGCC 61.269 55.000 4.18 0.00 0.00 6.53
372 382 2.796617 CACTTTTCGCTTGCGCCG 60.797 61.111 4.18 0.37 0.00 6.46
373 383 4.025401 ACTTTTCGCTTGCGCCGG 62.025 61.111 4.18 0.00 0.00 6.13
374 384 3.722295 CTTTTCGCTTGCGCCGGA 61.722 61.111 5.05 0.00 0.00 5.14
375 385 3.651480 CTTTTCGCTTGCGCCGGAG 62.651 63.158 5.05 1.55 0.00 4.63
435 445 4.656117 CCGGGCACAAAAACGGCC 62.656 66.667 0.00 0.00 46.99 6.13
438 448 3.597728 GGCACAAAAACGGCCCGA 61.598 61.111 11.71 0.00 41.90 5.14
439 449 2.050442 GCACAAAAACGGCCCGAG 60.050 61.111 11.71 0.00 0.00 4.63
440 450 2.050442 CACAAAAACGGCCCGAGC 60.050 61.111 11.71 0.00 38.76 5.03
453 463 3.047877 CGAGCCGGCGGAAGTTTT 61.048 61.111 33.44 6.66 0.00 2.43
454 464 2.613506 CGAGCCGGCGGAAGTTTTT 61.614 57.895 33.44 0.00 0.00 1.94
478 488 2.383298 TGCTAGCGCAAATAAATCGC 57.617 45.000 11.47 0.00 44.62 4.58
483 493 1.199624 GCGCAAATAAATCGCTTGGG 58.800 50.000 0.30 0.00 44.79 4.12
484 494 1.838913 CGCAAATAAATCGCTTGGGG 58.161 50.000 0.00 0.00 31.41 4.96
485 495 1.403679 CGCAAATAAATCGCTTGGGGA 59.596 47.619 0.00 0.00 31.41 4.81
486 496 2.541588 CGCAAATAAATCGCTTGGGGAG 60.542 50.000 0.00 0.00 31.41 4.30
487 497 2.223805 GCAAATAAATCGCTTGGGGAGG 60.224 50.000 0.00 0.00 0.00 4.30
488 498 1.692411 AATAAATCGCTTGGGGAGGC 58.308 50.000 0.00 0.00 0.00 4.70
489 499 0.178990 ATAAATCGCTTGGGGAGGCC 60.179 55.000 0.00 0.00 0.00 5.19
490 500 1.279025 TAAATCGCTTGGGGAGGCCT 61.279 55.000 3.86 3.86 0.00 5.19
491 501 2.155197 AAATCGCTTGGGGAGGCCTT 62.155 55.000 6.77 0.00 0.00 4.35
492 502 2.558380 AATCGCTTGGGGAGGCCTTC 62.558 60.000 6.77 3.67 0.00 3.46
493 503 4.803908 CGCTTGGGGAGGCCTTCC 62.804 72.222 23.75 23.75 46.00 3.46
495 505 2.001269 GCTTGGGGAGGCCTTCCTA 61.001 63.158 30.10 22.60 44.46 2.94
496 506 1.988982 GCTTGGGGAGGCCTTCCTAG 61.989 65.000 30.10 25.35 44.46 3.02
497 507 1.307866 TTGGGGAGGCCTTCCTAGG 60.308 63.158 30.10 0.82 44.46 3.02
498 508 1.833055 TTGGGGAGGCCTTCCTAGGA 61.833 60.000 30.10 7.62 45.05 2.94
503 513 4.222847 GGCCTTCCTAGGACGCGG 62.223 72.222 12.22 13.38 45.05 6.46
504 514 4.893601 GCCTTCCTAGGACGCGGC 62.894 72.222 23.05 23.05 45.05 6.53
505 515 3.148279 CCTTCCTAGGACGCGGCT 61.148 66.667 13.91 0.00 45.05 5.52
506 516 2.105128 CTTCCTAGGACGCGGCTG 59.895 66.667 13.91 1.99 0.00 4.85
507 517 3.432051 CTTCCTAGGACGCGGCTGG 62.432 68.421 13.91 12.62 0.00 4.85
508 518 3.949885 TTCCTAGGACGCGGCTGGA 62.950 63.158 13.91 15.00 0.00 3.86
509 519 3.905678 CCTAGGACGCGGCTGGAG 61.906 72.222 13.91 6.62 0.00 3.86
510 520 2.829003 CTAGGACGCGGCTGGAGA 60.829 66.667 13.91 0.00 0.00 3.71
511 521 2.123854 TAGGACGCGGCTGGAGAT 60.124 61.111 13.91 0.00 0.00 2.75
512 522 2.413437 CTAGGACGCGGCTGGAGATG 62.413 65.000 13.91 0.00 0.00 2.90
514 524 4.521062 GACGCGGCTGGAGATGCT 62.521 66.667 12.47 0.00 0.00 3.79
515 525 4.521062 ACGCGGCTGGAGATGCTC 62.521 66.667 12.47 0.00 0.00 4.26
516 526 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09
517 527 2.188994 GCGGCTGGAGATGCTCTT 59.811 61.111 0.00 0.00 0.00 2.85
518 528 1.443407 GCGGCTGGAGATGCTCTTA 59.557 57.895 0.00 0.00 0.00 2.10
519 529 0.599728 GCGGCTGGAGATGCTCTTAG 60.600 60.000 0.00 0.00 0.00 2.18
520 530 0.599728 CGGCTGGAGATGCTCTTAGC 60.600 60.000 12.47 12.47 42.82 3.09
521 531 0.758123 GGCTGGAGATGCTCTTAGCT 59.242 55.000 17.10 0.00 42.97 3.32
522 532 1.270252 GGCTGGAGATGCTCTTAGCTC 60.270 57.143 17.10 0.00 42.97 4.09
523 533 1.688197 GCTGGAGATGCTCTTAGCTCT 59.312 52.381 13.16 1.20 42.97 4.09
524 534 2.102925 GCTGGAGATGCTCTTAGCTCTT 59.897 50.000 13.16 0.00 42.97 2.85
525 535 3.719924 CTGGAGATGCTCTTAGCTCTTG 58.280 50.000 0.00 0.00 42.97 3.02
526 536 3.102972 TGGAGATGCTCTTAGCTCTTGT 58.897 45.455 0.00 0.00 42.97 3.16
527 537 4.281657 TGGAGATGCTCTTAGCTCTTGTA 58.718 43.478 0.00 0.00 42.97 2.41
528 538 4.098654 TGGAGATGCTCTTAGCTCTTGTAC 59.901 45.833 0.00 0.00 42.97 2.90
529 539 4.098654 GGAGATGCTCTTAGCTCTTGTACA 59.901 45.833 0.00 0.00 42.97 2.90
530 540 5.221422 GGAGATGCTCTTAGCTCTTGTACAT 60.221 44.000 0.00 0.00 42.97 2.29
531 541 6.015856 GGAGATGCTCTTAGCTCTTGTACATA 60.016 42.308 0.00 0.00 42.97 2.29
532 542 6.744112 AGATGCTCTTAGCTCTTGTACATAC 58.256 40.000 0.00 0.00 42.97 2.39
533 543 6.549364 AGATGCTCTTAGCTCTTGTACATACT 59.451 38.462 0.00 0.00 42.97 2.12
534 544 6.531503 TGCTCTTAGCTCTTGTACATACTT 57.468 37.500 0.00 0.00 42.97 2.24
535 545 6.936279 TGCTCTTAGCTCTTGTACATACTTT 58.064 36.000 0.00 0.00 42.97 2.66
536 546 7.386851 TGCTCTTAGCTCTTGTACATACTTTT 58.613 34.615 0.00 0.00 42.97 2.27
537 547 8.528643 TGCTCTTAGCTCTTGTACATACTTTTA 58.471 33.333 0.00 0.00 42.97 1.52
538 548 9.535878 GCTCTTAGCTCTTGTACATACTTTTAT 57.464 33.333 0.00 0.00 38.45 1.40
544 554 9.384764 AGCTCTTGTACATACTTTTATTTCCTC 57.615 33.333 0.00 0.00 0.00 3.71
545 555 9.384764 GCTCTTGTACATACTTTTATTTCCTCT 57.615 33.333 0.00 0.00 0.00 3.69
556 566 8.747538 ACTTTTATTTCCTCTGTACAGTTGTT 57.252 30.769 21.99 6.85 0.00 2.83
557 567 8.621286 ACTTTTATTTCCTCTGTACAGTTGTTG 58.379 33.333 21.99 7.89 0.00 3.33
558 568 8.740123 TTTTATTTCCTCTGTACAGTTGTTGA 57.260 30.769 21.99 9.90 0.00 3.18
559 569 8.918202 TTTATTTCCTCTGTACAGTTGTTGAT 57.082 30.769 21.99 12.44 0.00 2.57
560 570 8.547967 TTATTTCCTCTGTACAGTTGTTGATC 57.452 34.615 21.99 0.00 0.00 2.92
561 571 5.808366 TTCCTCTGTACAGTTGTTGATCT 57.192 39.130 21.99 0.00 0.00 2.75
562 572 5.808366 TCCTCTGTACAGTTGTTGATCTT 57.192 39.130 21.99 0.00 0.00 2.40
563 573 6.174720 TCCTCTGTACAGTTGTTGATCTTT 57.825 37.500 21.99 0.00 0.00 2.52
564 574 7.297936 TCCTCTGTACAGTTGTTGATCTTTA 57.702 36.000 21.99 0.00 0.00 1.85
565 575 7.732025 TCCTCTGTACAGTTGTTGATCTTTAA 58.268 34.615 21.99 0.00 0.00 1.52
566 576 8.375506 TCCTCTGTACAGTTGTTGATCTTTAAT 58.624 33.333 21.99 0.00 0.00 1.40
567 577 9.653287 CCTCTGTACAGTTGTTGATCTTTAATA 57.347 33.333 21.99 0.00 0.00 0.98
573 583 8.986477 ACAGTTGTTGATCTTTAATAAATGGC 57.014 30.769 0.00 0.00 31.49 4.40
574 584 8.806146 ACAGTTGTTGATCTTTAATAAATGGCT 58.194 29.630 0.00 0.00 31.49 4.75
575 585 9.079833 CAGTTGTTGATCTTTAATAAATGGCTG 57.920 33.333 0.00 0.00 0.00 4.85
576 586 8.806146 AGTTGTTGATCTTTAATAAATGGCTGT 58.194 29.630 0.00 0.00 0.00 4.40
577 587 8.863049 GTTGTTGATCTTTAATAAATGGCTGTG 58.137 33.333 0.00 0.00 0.00 3.66
578 588 7.546358 TGTTGATCTTTAATAAATGGCTGTGG 58.454 34.615 0.00 0.00 0.00 4.17
579 589 6.713762 TGATCTTTAATAAATGGCTGTGGG 57.286 37.500 0.00 0.00 0.00 4.61
580 590 5.598005 TGATCTTTAATAAATGGCTGTGGGG 59.402 40.000 0.00 0.00 0.00 4.96
581 591 3.704061 TCTTTAATAAATGGCTGTGGGGC 59.296 43.478 0.00 0.00 41.27 5.80
582 592 3.396685 TTAATAAATGGCTGTGGGGCT 57.603 42.857 0.00 0.00 41.48 5.19
583 593 2.252535 AATAAATGGCTGTGGGGCTT 57.747 45.000 0.00 0.00 41.48 4.35
584 594 2.252535 ATAAATGGCTGTGGGGCTTT 57.747 45.000 0.00 0.00 41.48 3.51
585 595 1.265236 TAAATGGCTGTGGGGCTTTG 58.735 50.000 0.00 0.00 41.48 2.77
586 596 2.115734 AAATGGCTGTGGGGCTTTGC 62.116 55.000 0.00 0.00 41.48 3.68
601 611 5.582689 GGCTTTGCCTCACAGTAAATATT 57.417 39.130 0.73 0.00 46.69 1.28
602 612 6.693315 GGCTTTGCCTCACAGTAAATATTA 57.307 37.500 0.73 0.00 46.69 0.98
603 613 7.095695 GGCTTTGCCTCACAGTAAATATTAA 57.904 36.000 0.73 0.00 46.69 1.40
604 614 7.543756 GGCTTTGCCTCACAGTAAATATTAAA 58.456 34.615 0.73 0.00 46.69 1.52
605 615 8.032451 GGCTTTGCCTCACAGTAAATATTAAAA 58.968 33.333 0.73 0.00 46.69 1.52
606 616 9.418045 GCTTTGCCTCACAGTAAATATTAAAAA 57.582 29.630 0.00 0.00 0.00 1.94
635 645 7.105588 TGCTATCTGCTTCTTCACAGAAATTA 58.894 34.615 0.00 0.00 45.49 1.40
694 706 0.548031 ATGGACGGACTGGATTGCAT 59.452 50.000 0.00 0.00 0.00 3.96
699 711 2.487762 GACGGACTGGATTGCATGAAAA 59.512 45.455 0.00 0.00 0.00 2.29
803 815 0.739462 CAAGCTATCGGCCACGTCAA 60.739 55.000 2.24 0.00 43.05 3.18
965 980 0.903454 ACCACCGTTCCTCCGATTCT 60.903 55.000 0.00 0.00 0.00 2.40
1206 1342 1.298413 CGAGAACGTCATCCGCGAT 60.298 57.895 8.23 0.00 41.42 4.58
1332 1468 0.179000 CCACCACCAGATCAGTAGCC 59.821 60.000 0.00 0.00 0.00 3.93
1333 1469 1.198713 CACCACCAGATCAGTAGCCT 58.801 55.000 0.00 0.00 0.00 4.58
1348 1525 1.693627 AGCCTGATAGTCGGGTGTAG 58.306 55.000 6.68 0.00 44.85 2.74
1372 1549 1.871772 GCATCTCGCTGCTGTTTGT 59.128 52.632 0.00 0.00 39.12 2.83
1379 1557 1.900498 GCTGCTGTTTGTCCTGCCT 60.900 57.895 0.00 0.00 0.00 4.75
1388 1566 3.186909 GTTTGTCCTGCCTTGTTTGTTC 58.813 45.455 0.00 0.00 0.00 3.18
1401 1579 5.765182 CCTTGTTTGTTCTCTGGATGTACTT 59.235 40.000 0.00 0.00 0.00 2.24
1404 1582 5.991606 TGTTTGTTCTCTGGATGTACTTCTG 59.008 40.000 8.51 3.19 0.00 3.02
1405 1583 5.808366 TTGTTCTCTGGATGTACTTCTGT 57.192 39.130 8.51 0.00 0.00 3.41
1406 1584 6.911250 TTGTTCTCTGGATGTACTTCTGTA 57.089 37.500 8.51 0.00 0.00 2.74
1407 1585 6.268825 TGTTCTCTGGATGTACTTCTGTAC 57.731 41.667 8.51 0.00 46.74 2.90
1408 1586 6.010850 TGTTCTCTGGATGTACTTCTGTACT 58.989 40.000 8.51 0.00 46.70 2.73
1455 1634 6.534079 CAGTTTACCCTTGAATTCGTACCTAG 59.466 42.308 0.04 0.00 0.00 3.02
1497 1676 3.842126 CGTGCGCGTGGTCAGATG 61.842 66.667 12.43 0.00 0.00 2.90
1550 1729 4.424842 TGTAAATTTCAGCCCCCAAATCT 58.575 39.130 0.00 0.00 0.00 2.40
1552 1731 2.925966 ATTTCAGCCCCCAAATCTGA 57.074 45.000 0.00 0.00 35.30 3.27
1558 1737 1.077663 AGCCCCCAAATCTGATTGTGT 59.922 47.619 3.22 0.00 0.00 3.72
1559 1738 2.311542 AGCCCCCAAATCTGATTGTGTA 59.688 45.455 3.22 0.00 0.00 2.90
1606 1801 2.752030 TGGTGGATTCAAACCAAACCA 58.248 42.857 7.75 0.00 43.46 3.67
1607 1802 3.312890 TGGTGGATTCAAACCAAACCAT 58.687 40.909 7.75 0.00 43.46 3.55
1609 1804 5.090139 TGGTGGATTCAAACCAAACCATAT 58.910 37.500 7.75 0.00 43.46 1.78
1614 1809 6.268617 TGGATTCAAACCAAACCATATTGTGA 59.731 34.615 0.00 0.00 34.25 3.58
1653 1848 9.713684 TTTGGTGGATAGAAATCAAATCCTATT 57.286 29.630 13.01 0.00 39.97 1.73
1654 1849 9.713684 TTGGTGGATAGAAATCAAATCCTATTT 57.286 29.630 13.01 0.00 39.97 1.40
1655 1850 9.713684 TGGTGGATAGAAATCAAATCCTATTTT 57.286 29.630 13.01 0.00 39.97 1.82
1663 1858 9.093458 AGAAATCAAATCCTATTTTCTGTTGGT 57.907 29.630 0.00 0.00 35.81 3.67
1664 1859 9.710900 GAAATCAAATCCTATTTTCTGTTGGTT 57.289 29.630 0.00 0.00 0.00 3.67
1666 1861 9.710900 AATCAAATCCTATTTTCTGTTGGTTTC 57.289 29.630 0.00 0.00 0.00 2.78
1667 1862 8.243961 TCAAATCCTATTTTCTGTTGGTTTCA 57.756 30.769 0.00 0.00 0.00 2.69
1668 1863 8.359642 TCAAATCCTATTTTCTGTTGGTTTCAG 58.640 33.333 0.00 0.00 0.00 3.02
1669 1864 7.839680 AATCCTATTTTCTGTTGGTTTCAGT 57.160 32.000 0.00 0.00 34.86 3.41
1670 1865 6.633500 TCCTATTTTCTGTTGGTTTCAGTG 57.367 37.500 0.00 0.00 34.86 3.66
1671 1866 6.126409 TCCTATTTTCTGTTGGTTTCAGTGT 58.874 36.000 0.00 0.00 34.86 3.55
1672 1867 6.605594 TCCTATTTTCTGTTGGTTTCAGTGTT 59.394 34.615 0.00 0.00 34.86 3.32
1673 1868 7.123547 TCCTATTTTCTGTTGGTTTCAGTGTTT 59.876 33.333 0.00 0.00 34.86 2.83
1674 1869 6.966435 ATTTTCTGTTGGTTTCAGTGTTTG 57.034 33.333 0.00 0.00 34.86 2.93
1675 1870 4.448537 TTCTGTTGGTTTCAGTGTTTGG 57.551 40.909 0.00 0.00 34.86 3.28
1676 1871 3.691575 TCTGTTGGTTTCAGTGTTTGGA 58.308 40.909 0.00 0.00 34.86 3.53
1677 1872 4.277476 TCTGTTGGTTTCAGTGTTTGGAT 58.723 39.130 0.00 0.00 34.86 3.41
1678 1873 4.709397 TCTGTTGGTTTCAGTGTTTGGATT 59.291 37.500 0.00 0.00 34.86 3.01
1679 1874 5.004922 TGTTGGTTTCAGTGTTTGGATTC 57.995 39.130 0.00 0.00 0.00 2.52
1680 1875 4.464244 TGTTGGTTTCAGTGTTTGGATTCA 59.536 37.500 0.00 0.00 0.00 2.57
1681 1876 5.047021 TGTTGGTTTCAGTGTTTGGATTCAA 60.047 36.000 0.00 0.00 0.00 2.69
1682 1877 5.667539 TGGTTTCAGTGTTTGGATTCAAA 57.332 34.783 0.00 0.00 40.23 2.69
1683 1878 6.042638 TGGTTTCAGTGTTTGGATTCAAAA 57.957 33.333 0.00 0.00 43.56 2.44
1684 1879 5.872070 TGGTTTCAGTGTTTGGATTCAAAAC 59.128 36.000 9.36 9.36 43.56 2.43
1685 1880 5.293324 GGTTTCAGTGTTTGGATTCAAAACC 59.707 40.000 12.99 0.00 43.56 3.27
1686 1881 5.667539 TTCAGTGTTTGGATTCAAAACCA 57.332 34.783 12.99 0.00 43.56 3.67
1687 1882 5.667539 TCAGTGTTTGGATTCAAAACCAA 57.332 34.783 12.99 0.75 43.56 3.67
1699 1894 8.902540 GGATTCAAAACCAAATCCTACTTTTT 57.097 30.769 6.83 0.00 44.97 1.94
1700 1895 8.773645 GGATTCAAAACCAAATCCTACTTTTTG 58.226 33.333 6.83 0.00 44.97 2.44
1701 1896 9.325198 GATTCAAAACCAAATCCTACTTTTTGT 57.675 29.630 0.00 0.00 36.05 2.83
1702 1897 9.679661 ATTCAAAACCAAATCCTACTTTTTGTT 57.320 25.926 0.00 0.00 36.05 2.83
1703 1898 8.485976 TCAAAACCAAATCCTACTTTTTGTTG 57.514 30.769 0.00 0.00 36.05 3.33
1704 1899 7.550906 TCAAAACCAAATCCTACTTTTTGTTGG 59.449 33.333 0.00 0.00 41.83 3.77
1705 1900 4.956085 ACCAAATCCTACTTTTTGTTGGC 58.044 39.130 0.00 0.00 40.58 4.52
1706 1901 4.653801 ACCAAATCCTACTTTTTGTTGGCT 59.346 37.500 0.00 0.00 40.58 4.75
1707 1902 5.130311 ACCAAATCCTACTTTTTGTTGGCTT 59.870 36.000 0.00 0.00 40.58 4.35
1708 1903 5.696270 CCAAATCCTACTTTTTGTTGGCTTC 59.304 40.000 0.00 0.00 40.58 3.86
1709 1904 6.279882 CAAATCCTACTTTTTGTTGGCTTCA 58.720 36.000 0.00 0.00 40.58 3.02
1710 1905 5.712152 ATCCTACTTTTTGTTGGCTTCAG 57.288 39.130 0.00 0.00 40.58 3.02
1711 1906 4.532834 TCCTACTTTTTGTTGGCTTCAGT 58.467 39.130 0.00 0.00 40.58 3.41
1712 1907 4.338118 TCCTACTTTTTGTTGGCTTCAGTG 59.662 41.667 0.00 0.00 40.58 3.66
1713 1908 4.097892 CCTACTTTTTGTTGGCTTCAGTGT 59.902 41.667 0.00 0.00 35.02 3.55
1714 1909 4.535526 ACTTTTTGTTGGCTTCAGTGTT 57.464 36.364 0.00 0.00 0.00 3.32
1715 1910 4.893608 ACTTTTTGTTGGCTTCAGTGTTT 58.106 34.783 0.00 0.00 0.00 2.83
1716 1911 4.690280 ACTTTTTGTTGGCTTCAGTGTTTG 59.310 37.500 0.00 0.00 0.00 2.93
1717 1912 2.957491 TTGTTGGCTTCAGTGTTTGG 57.043 45.000 0.00 0.00 0.00 3.28
1718 1913 1.846007 TGTTGGCTTCAGTGTTTGGT 58.154 45.000 0.00 0.00 0.00 3.67
1719 1914 1.476085 TGTTGGCTTCAGTGTTTGGTG 59.524 47.619 0.00 0.00 0.00 4.17
1720 1915 1.110442 TTGGCTTCAGTGTTTGGTGG 58.890 50.000 0.00 0.00 0.00 4.61
1721 1916 0.257328 TGGCTTCAGTGTTTGGTGGA 59.743 50.000 0.00 0.00 0.00 4.02
1722 1917 1.133513 TGGCTTCAGTGTTTGGTGGAT 60.134 47.619 0.00 0.00 0.00 3.41
1723 1918 1.541588 GGCTTCAGTGTTTGGTGGATC 59.458 52.381 0.00 0.00 0.00 3.36
1724 1919 1.541588 GCTTCAGTGTTTGGTGGATCC 59.458 52.381 4.20 4.20 0.00 3.36
1725 1920 2.862541 CTTCAGTGTTTGGTGGATCCA 58.137 47.619 11.44 11.44 45.60 3.41
1735 1930 2.534990 TGGTGGATCCAAACCAAATCC 58.465 47.619 18.20 11.44 43.46 3.01
1736 1931 2.111613 TGGTGGATCCAAACCAAATCCT 59.888 45.455 18.20 0.00 43.46 3.24
1737 1932 3.335183 TGGTGGATCCAAACCAAATCCTA 59.665 43.478 18.20 0.00 43.46 2.94
1754 1949 2.819608 TCCTATTTGTGTTGGCTTCAGC 59.180 45.455 0.00 0.00 41.14 4.26
1777 2055 1.758936 TGCTGGATTCAGGCTGAATG 58.241 50.000 39.37 27.64 46.20 2.67
1815 2093 4.437390 GCTCCATCGTGATGTTAAACTTGG 60.437 45.833 8.89 0.00 37.11 3.61
1834 2112 3.146066 TGGTAGTGCTGGAATGTGTTTC 58.854 45.455 0.00 0.00 0.00 2.78
1846 2124 5.473162 TGGAATGTGTTTCAACTATCTGTGG 59.527 40.000 0.00 0.00 35.94 4.17
1890 2175 1.140852 CTGTGTTGGTCTGGTGGAGAA 59.859 52.381 0.00 0.00 30.26 2.87
1902 2187 0.312102 GTGGAGAACTGTTTGCTGCC 59.688 55.000 0.00 0.00 0.00 4.85
1913 2205 1.042229 TTTGCTGCCTTGCTGAACAT 58.958 45.000 0.00 0.00 0.00 2.71
1928 2220 4.619863 GCTGAACATGTGCATTTGGAGAAT 60.620 41.667 7.07 0.00 0.00 2.40
1943 2235 8.497554 CATTTGGAGAATTGTGTTAAAACATGG 58.502 33.333 0.00 0.00 41.59 3.66
2000 2292 7.865706 AGTTATTAGTATTGCTTGTGAAGGG 57.134 36.000 0.00 0.00 0.00 3.95
2031 2323 1.808945 CTCTGGTGATTGGTGAAGTGC 59.191 52.381 0.00 0.00 0.00 4.40
2045 2337 3.316308 GTGAAGTGCTGTTGTTCATCCTT 59.684 43.478 0.00 0.00 32.98 3.36
2049 2341 6.265196 TGAAGTGCTGTTGTTCATCCTTTTAT 59.735 34.615 0.00 0.00 0.00 1.40
2054 2346 4.804108 TGTTGTTCATCCTTTTATTGCCG 58.196 39.130 0.00 0.00 0.00 5.69
2058 2350 4.173256 GTTCATCCTTTTATTGCCGGTTG 58.827 43.478 1.90 0.00 0.00 3.77
2060 2352 3.442273 TCATCCTTTTATTGCCGGTTGAC 59.558 43.478 1.90 0.00 0.00 3.18
2074 2366 0.793104 GTTGACCGCGTATTTGCTGC 60.793 55.000 4.92 0.00 0.00 5.25
2113 2405 8.053653 CGAGTGGTTAATTTTGTTTAAGTTTGC 58.946 33.333 0.00 0.00 0.00 3.68
2192 2512 9.781834 GTGCAAATATAACAAACTAATACTGCA 57.218 29.630 0.00 0.00 30.63 4.41
2209 2529 5.909621 ACTGCACAGCAATTTCAGAATAT 57.090 34.783 0.00 0.00 38.41 1.28
2239 2559 3.603532 CTGAGCATTTACAGAAGCCTCA 58.396 45.455 0.00 0.00 36.38 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.888863 GACGTCCAGGAGCAGGAG 59.111 66.667 3.51 0.00 35.42 3.69
54 55 1.299773 GAAGATGAGGAGGCGCTCG 60.300 63.158 7.64 0.00 0.00 5.03
101 102 3.353836 CGCCCACAAGGTGTTCGG 61.354 66.667 0.00 0.00 41.64 4.30
116 117 1.143401 GGGCTTGTACCTACCTCGC 59.857 63.158 0.00 0.00 0.00 5.03
117 118 1.436336 CGGGCTTGTACCTACCTCG 59.564 63.158 0.00 0.00 0.00 4.63
118 119 1.143401 GCGGGCTTGTACCTACCTC 59.857 63.158 0.00 0.00 0.00 3.85
119 120 2.364780 GGCGGGCTTGTACCTACCT 61.365 63.158 0.00 0.00 0.00 3.08
121 122 2.202837 CGGCGGGCTTGTACCTAC 60.203 66.667 0.00 0.00 0.00 3.18
122 123 3.463585 CCGGCGGGCTTGTACCTA 61.464 66.667 20.56 0.00 0.00 3.08
219 229 1.310904 CTAGGTAGACCGTCTCCAGC 58.689 60.000 3.74 0.00 42.08 4.85
260 270 4.864334 CACCCTGCTGATCCCGGC 62.864 72.222 0.00 0.00 44.86 6.13
261 271 4.181010 CCACCCTGCTGATCCCGG 62.181 72.222 0.00 0.00 0.00 5.73
262 272 4.864334 GCCACCCTGCTGATCCCG 62.864 72.222 0.00 0.00 0.00 5.14
263 273 4.864334 CGCCACCCTGCTGATCCC 62.864 72.222 0.00 0.00 0.00 3.85
264 274 4.864334 CCGCCACCCTGCTGATCC 62.864 72.222 0.00 0.00 0.00 3.36
292 302 4.570874 GATTCGCCCTCCTGCCCC 62.571 72.222 0.00 0.00 0.00 5.80
293 303 3.483869 AGATTCGCCCTCCTGCCC 61.484 66.667 0.00 0.00 0.00 5.36
294 304 2.203126 CAGATTCGCCCTCCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
295 305 2.203126 CCAGATTCGCCCTCCTGC 60.203 66.667 0.00 0.00 0.00 4.85
296 306 2.203126 GCCAGATTCGCCCTCCTG 60.203 66.667 0.00 0.00 0.00 3.86
297 307 3.483869 GGCCAGATTCGCCCTCCT 61.484 66.667 0.00 0.00 40.78 3.69
298 308 4.918201 CGGCCAGATTCGCCCTCC 62.918 72.222 2.24 0.00 43.98 4.30
299 309 4.918201 CCGGCCAGATTCGCCCTC 62.918 72.222 2.24 0.00 43.98 4.30
304 314 2.608970 AATCCACCCGGCCAGATTCG 62.609 60.000 2.24 0.00 0.00 3.34
305 315 1.103398 CAATCCACCCGGCCAGATTC 61.103 60.000 2.24 0.00 0.00 2.52
306 316 1.076777 CAATCCACCCGGCCAGATT 60.077 57.895 2.24 0.00 0.00 2.40
307 317 2.000701 TCAATCCACCCGGCCAGAT 61.001 57.895 2.24 0.00 0.00 2.90
308 318 2.609299 TCAATCCACCCGGCCAGA 60.609 61.111 2.24 0.00 0.00 3.86
309 319 2.438434 GTCAATCCACCCGGCCAG 60.438 66.667 2.24 0.00 0.00 4.85
310 320 2.075355 AAAGTCAATCCACCCGGCCA 62.075 55.000 2.24 0.00 0.00 5.36
311 321 0.898326 AAAAGTCAATCCACCCGGCC 60.898 55.000 0.00 0.00 0.00 6.13
312 322 0.526211 GAAAAGTCAATCCACCCGGC 59.474 55.000 0.00 0.00 0.00 6.13
313 323 0.802494 CGAAAAGTCAATCCACCCGG 59.198 55.000 0.00 0.00 0.00 5.73
314 324 0.168128 GCGAAAAGTCAATCCACCCG 59.832 55.000 0.00 0.00 0.00 5.28
315 325 1.534729 AGCGAAAAGTCAATCCACCC 58.465 50.000 0.00 0.00 0.00 4.61
316 326 2.293399 ACAAGCGAAAAGTCAATCCACC 59.707 45.455 0.00 0.00 0.00 4.61
317 327 3.003275 TGACAAGCGAAAAGTCAATCCAC 59.997 43.478 0.00 0.00 39.15 4.02
318 328 3.210227 TGACAAGCGAAAAGTCAATCCA 58.790 40.909 0.00 0.00 39.15 3.41
319 329 3.896648 TGACAAGCGAAAAGTCAATCC 57.103 42.857 0.00 0.00 39.15 3.01
323 333 3.243035 CCACATTGACAAGCGAAAAGTCA 60.243 43.478 0.00 0.00 40.24 3.41
324 334 3.300009 CCACATTGACAAGCGAAAAGTC 58.700 45.455 0.00 0.00 0.00 3.01
325 335 2.543653 GCCACATTGACAAGCGAAAAGT 60.544 45.455 0.00 0.00 0.00 2.66
326 336 2.053627 GCCACATTGACAAGCGAAAAG 58.946 47.619 0.00 0.00 0.00 2.27
327 337 1.269517 GGCCACATTGACAAGCGAAAA 60.270 47.619 0.00 0.00 0.00 2.29
328 338 0.313672 GGCCACATTGACAAGCGAAA 59.686 50.000 0.00 0.00 0.00 3.46
329 339 1.523154 GGGCCACATTGACAAGCGAA 61.523 55.000 4.39 0.00 0.00 4.70
330 340 1.971167 GGGCCACATTGACAAGCGA 60.971 57.895 4.39 0.00 0.00 4.93
331 341 2.568090 GGGCCACATTGACAAGCG 59.432 61.111 4.39 0.00 0.00 4.68
332 342 1.880819 CTGGGGCCACATTGACAAGC 61.881 60.000 8.98 0.00 0.00 4.01
333 343 1.252904 CCTGGGGCCACATTGACAAG 61.253 60.000 8.98 0.00 0.00 3.16
334 344 1.228831 CCTGGGGCCACATTGACAA 60.229 57.895 8.98 0.00 0.00 3.18
335 345 1.724148 TTCCTGGGGCCACATTGACA 61.724 55.000 8.98 0.00 0.00 3.58
336 346 1.076549 TTCCTGGGGCCACATTGAC 59.923 57.895 8.98 0.00 0.00 3.18
337 347 1.076549 GTTCCTGGGGCCACATTGA 59.923 57.895 8.98 5.52 0.00 2.57
338 348 1.228831 TGTTCCTGGGGCCACATTG 60.229 57.895 8.98 2.44 0.00 2.82
339 349 1.228862 GTGTTCCTGGGGCCACATT 60.229 57.895 8.98 0.00 0.00 2.71
340 350 1.729267 AAGTGTTCCTGGGGCCACAT 61.729 55.000 8.98 0.00 30.40 3.21
341 351 1.943730 AAAGTGTTCCTGGGGCCACA 61.944 55.000 7.89 7.89 30.40 4.17
342 352 0.759060 AAAAGTGTTCCTGGGGCCAC 60.759 55.000 4.39 0.00 0.00 5.01
343 353 0.469144 GAAAAGTGTTCCTGGGGCCA 60.469 55.000 4.39 0.00 0.00 5.36
344 354 1.524008 CGAAAAGTGTTCCTGGGGCC 61.524 60.000 0.00 0.00 0.00 5.80
345 355 1.956802 CGAAAAGTGTTCCTGGGGC 59.043 57.895 0.00 0.00 0.00 5.80
346 356 0.537371 AGCGAAAAGTGTTCCTGGGG 60.537 55.000 0.00 0.00 0.00 4.96
347 357 1.001378 CAAGCGAAAAGTGTTCCTGGG 60.001 52.381 0.00 0.00 0.00 4.45
348 358 1.600413 GCAAGCGAAAAGTGTTCCTGG 60.600 52.381 0.00 0.00 0.00 4.45
349 359 1.758783 GCAAGCGAAAAGTGTTCCTG 58.241 50.000 0.00 0.00 0.00 3.86
350 360 0.307760 CGCAAGCGAAAAGTGTTCCT 59.692 50.000 9.11 0.00 42.83 3.36
351 361 2.783440 CGCAAGCGAAAAGTGTTCC 58.217 52.632 9.11 0.00 42.83 3.62
413 423 3.972276 TTTTTGTGCCCGGCGCTC 61.972 61.111 23.18 11.92 40.03 5.03
414 424 4.279043 GTTTTTGTGCCCGGCGCT 62.279 61.111 23.18 0.00 40.03 5.92
416 426 4.992294 CCGTTTTTGTGCCCGGCG 62.992 66.667 4.58 0.00 33.20 6.46
418 428 4.656117 GGCCGTTTTTGTGCCCGG 62.656 66.667 0.00 0.00 43.22 5.73
421 431 3.551887 CTCGGGCCGTTTTTGTGCC 62.552 63.158 27.32 0.00 44.59 5.01
422 432 2.050442 CTCGGGCCGTTTTTGTGC 60.050 61.111 27.32 0.00 0.00 4.57
423 433 2.050442 GCTCGGGCCGTTTTTGTG 60.050 61.111 27.32 9.35 0.00 3.33
436 446 2.613506 AAAAACTTCCGCCGGCTCG 61.614 57.895 26.68 14.79 0.00 5.03
437 447 3.351450 AAAAACTTCCGCCGGCTC 58.649 55.556 26.68 0.00 0.00 4.70
465 475 1.403679 TCCCCAAGCGATTTATTTGCG 59.596 47.619 0.00 0.00 39.97 4.85
466 476 2.223805 CCTCCCCAAGCGATTTATTTGC 60.224 50.000 0.00 0.00 34.63 3.68
467 477 2.223805 GCCTCCCCAAGCGATTTATTTG 60.224 50.000 0.00 0.00 0.00 2.32
468 478 2.031870 GCCTCCCCAAGCGATTTATTT 58.968 47.619 0.00 0.00 0.00 1.40
469 479 1.692411 GCCTCCCCAAGCGATTTATT 58.308 50.000 0.00 0.00 0.00 1.40
470 480 0.178990 GGCCTCCCCAAGCGATTTAT 60.179 55.000 0.00 0.00 0.00 1.40
471 481 1.226262 GGCCTCCCCAAGCGATTTA 59.774 57.895 0.00 0.00 0.00 1.40
472 482 2.043953 GGCCTCCCCAAGCGATTT 60.044 61.111 0.00 0.00 0.00 2.17
473 483 2.558380 GAAGGCCTCCCCAAGCGATT 62.558 60.000 5.23 0.00 35.39 3.34
474 484 3.017581 AAGGCCTCCCCAAGCGAT 61.018 61.111 5.23 0.00 35.39 4.58
475 485 3.717294 GAAGGCCTCCCCAAGCGA 61.717 66.667 5.23 0.00 35.39 4.93
476 486 4.803908 GGAAGGCCTCCCCAAGCG 62.804 72.222 5.23 0.00 38.44 4.68
477 487 1.988982 CTAGGAAGGCCTCCCCAAGC 61.989 65.000 22.02 1.18 46.81 4.01
478 488 1.348775 CCTAGGAAGGCCTCCCCAAG 61.349 65.000 22.02 12.89 46.81 3.61
479 489 1.307866 CCTAGGAAGGCCTCCCCAA 60.308 63.158 22.02 3.85 46.81 4.12
480 490 2.261293 TCCTAGGAAGGCCTCCCCA 61.261 63.158 22.02 1.00 46.81 4.96
481 491 1.766864 GTCCTAGGAAGGCCTCCCC 60.767 68.421 14.65 10.50 46.81 4.81
482 492 2.134933 CGTCCTAGGAAGGCCTCCC 61.135 68.421 14.65 0.58 46.81 4.30
483 493 2.798364 GCGTCCTAGGAAGGCCTCC 61.798 68.421 23.87 9.66 45.54 4.30
484 494 2.816012 GCGTCCTAGGAAGGCCTC 59.184 66.667 23.87 5.85 45.54 4.70
486 496 4.222847 CCGCGTCCTAGGAAGGCC 62.223 72.222 23.87 9.15 43.31 5.19
487 497 4.893601 GCCGCGTCCTAGGAAGGC 62.894 72.222 27.85 27.85 43.31 4.35
488 498 3.148279 AGCCGCGTCCTAGGAAGG 61.148 66.667 23.87 21.54 45.21 3.46
489 499 2.105128 CAGCCGCGTCCTAGGAAG 59.895 66.667 19.36 19.36 0.00 3.46
490 500 3.458163 CCAGCCGCGTCCTAGGAA 61.458 66.667 14.65 0.00 0.00 3.36
491 501 4.435970 TCCAGCCGCGTCCTAGGA 62.436 66.667 7.62 7.62 0.00 2.94
492 502 3.905678 CTCCAGCCGCGTCCTAGG 61.906 72.222 4.92 0.82 0.00 3.02
493 503 2.196925 ATCTCCAGCCGCGTCCTAG 61.197 63.158 4.92 0.00 0.00 3.02
494 504 2.123854 ATCTCCAGCCGCGTCCTA 60.124 61.111 4.92 0.00 0.00 2.94
495 505 3.842923 CATCTCCAGCCGCGTCCT 61.843 66.667 4.92 0.00 0.00 3.85
497 507 4.521062 AGCATCTCCAGCCGCGTC 62.521 66.667 4.92 0.00 0.00 5.19
498 508 4.521062 GAGCATCTCCAGCCGCGT 62.521 66.667 4.92 0.00 0.00 6.01
509 519 6.744112 AGTATGTACAAGAGCTAAGAGCATC 58.256 40.000 0.00 0.00 45.56 3.91
510 520 6.723298 AGTATGTACAAGAGCTAAGAGCAT 57.277 37.500 0.00 0.00 45.56 3.79
511 521 6.531503 AAGTATGTACAAGAGCTAAGAGCA 57.468 37.500 0.00 0.00 45.56 4.26
512 522 7.835634 AAAAGTATGTACAAGAGCTAAGAGC 57.164 36.000 0.00 0.00 42.84 4.09
518 528 9.384764 GAGGAAATAAAAGTATGTACAAGAGCT 57.615 33.333 0.00 0.00 0.00 4.09
519 529 9.384764 AGAGGAAATAAAAGTATGTACAAGAGC 57.615 33.333 0.00 0.00 0.00 4.09
530 540 9.841295 AACAACTGTACAGAGGAAATAAAAGTA 57.159 29.630 29.30 0.00 0.00 2.24
531 541 8.621286 CAACAACTGTACAGAGGAAATAAAAGT 58.379 33.333 29.30 0.00 0.00 2.66
532 542 8.836413 TCAACAACTGTACAGAGGAAATAAAAG 58.164 33.333 29.30 6.85 0.00 2.27
533 543 8.740123 TCAACAACTGTACAGAGGAAATAAAA 57.260 30.769 29.30 2.20 0.00 1.52
534 544 8.918202 ATCAACAACTGTACAGAGGAAATAAA 57.082 30.769 29.30 6.45 0.00 1.40
535 545 8.375506 AGATCAACAACTGTACAGAGGAAATAA 58.624 33.333 29.30 7.79 0.00 1.40
536 546 7.907389 AGATCAACAACTGTACAGAGGAAATA 58.093 34.615 29.30 9.06 0.00 1.40
537 547 6.773638 AGATCAACAACTGTACAGAGGAAAT 58.226 36.000 29.30 13.99 0.00 2.17
538 548 6.174720 AGATCAACAACTGTACAGAGGAAA 57.825 37.500 29.30 10.00 0.00 3.13
539 549 5.808366 AGATCAACAACTGTACAGAGGAA 57.192 39.130 29.30 9.48 0.00 3.36
540 550 5.808366 AAGATCAACAACTGTACAGAGGA 57.192 39.130 29.30 16.94 0.00 3.71
541 551 7.962964 TTAAAGATCAACAACTGTACAGAGG 57.037 36.000 29.30 20.67 0.00 3.69
548 558 8.806146 AGCCATTTATTAAAGATCAACAACTGT 58.194 29.630 0.00 0.00 0.00 3.55
549 559 9.079833 CAGCCATTTATTAAAGATCAACAACTG 57.920 33.333 0.00 0.00 0.00 3.16
550 560 8.806146 ACAGCCATTTATTAAAGATCAACAACT 58.194 29.630 0.00 0.00 0.00 3.16
551 561 8.863049 CACAGCCATTTATTAAAGATCAACAAC 58.137 33.333 0.00 0.00 0.00 3.32
552 562 8.034215 CCACAGCCATTTATTAAAGATCAACAA 58.966 33.333 0.00 0.00 0.00 2.83
553 563 7.363705 CCCACAGCCATTTATTAAAGATCAACA 60.364 37.037 0.00 0.00 0.00 3.33
554 564 6.980397 CCCACAGCCATTTATTAAAGATCAAC 59.020 38.462 0.00 0.00 0.00 3.18
555 565 6.098124 CCCCACAGCCATTTATTAAAGATCAA 59.902 38.462 0.00 0.00 0.00 2.57
556 566 5.598005 CCCCACAGCCATTTATTAAAGATCA 59.402 40.000 0.00 0.00 0.00 2.92
557 567 5.509670 GCCCCACAGCCATTTATTAAAGATC 60.510 44.000 0.00 0.00 0.00 2.75
558 568 4.344968 GCCCCACAGCCATTTATTAAAGAT 59.655 41.667 0.00 0.00 0.00 2.40
559 569 3.704061 GCCCCACAGCCATTTATTAAAGA 59.296 43.478 0.00 0.00 0.00 2.52
560 570 3.706086 AGCCCCACAGCCATTTATTAAAG 59.294 43.478 0.00 0.00 0.00 1.85
561 571 3.718723 AGCCCCACAGCCATTTATTAAA 58.281 40.909 0.00 0.00 0.00 1.52
562 572 3.396685 AGCCCCACAGCCATTTATTAA 57.603 42.857 0.00 0.00 0.00 1.40
563 573 3.396685 AAGCCCCACAGCCATTTATTA 57.603 42.857 0.00 0.00 0.00 0.98
564 574 2.236893 CAAAGCCCCACAGCCATTTATT 59.763 45.455 0.00 0.00 0.00 1.40
565 575 1.832998 CAAAGCCCCACAGCCATTTAT 59.167 47.619 0.00 0.00 0.00 1.40
566 576 1.265236 CAAAGCCCCACAGCCATTTA 58.735 50.000 0.00 0.00 0.00 1.40
567 577 2.060370 CAAAGCCCCACAGCCATTT 58.940 52.632 0.00 0.00 0.00 2.32
568 578 2.586293 GCAAAGCCCCACAGCCATT 61.586 57.895 0.00 0.00 0.00 3.16
569 579 2.999063 GCAAAGCCCCACAGCCAT 60.999 61.111 0.00 0.00 0.00 4.40
580 590 8.980143 TTTTAATATTTACTGTGAGGCAAAGC 57.020 30.769 0.00 0.00 0.00 3.51
635 645 6.288294 TCTTGCAACATACTATTCGCCTATT 58.712 36.000 0.00 0.00 0.00 1.73
703 715 1.000274 GGCAGCTCGAAACATTTGGTT 60.000 47.619 0.00 0.00 42.98 3.67
704 716 0.598065 GGCAGCTCGAAACATTTGGT 59.402 50.000 0.00 0.00 0.00 3.67
965 980 1.064783 CGAGCTGCGAGCAGATGTA 59.935 57.895 27.09 0.00 45.56 2.29
1047 1062 4.699522 ACCTTCCGGTGGCGCTTC 62.700 66.667 7.64 0.00 43.51 3.86
1170 1306 2.165234 CTCGAGGAAGATCTTGAGCACA 59.835 50.000 14.00 0.00 38.15 4.57
1206 1342 2.598099 TCGGTGTAGGTGACGGCA 60.598 61.111 0.00 0.00 0.00 5.69
1332 1468 1.002684 GCGACTACACCCGACTATCAG 60.003 57.143 0.00 0.00 0.00 2.90
1333 1469 1.019673 GCGACTACACCCGACTATCA 58.980 55.000 0.00 0.00 0.00 2.15
1336 1472 1.651240 GCTGCGACTACACCCGACTA 61.651 60.000 0.00 0.00 0.00 2.59
1337 1473 2.991076 GCTGCGACTACACCCGACT 61.991 63.158 0.00 0.00 0.00 4.18
1342 1478 0.867753 CGAGATGCTGCGACTACACC 60.868 60.000 0.00 0.00 0.00 4.16
1372 1549 2.575532 CAGAGAACAAACAAGGCAGGA 58.424 47.619 0.00 0.00 0.00 3.86
1379 1557 6.483307 CAGAAGTACATCCAGAGAACAAACAA 59.517 38.462 0.00 0.00 0.00 2.83
1401 1579 7.282585 CAATTTCCATTCCATCCTAGTACAGA 58.717 38.462 0.00 0.00 0.00 3.41
1404 1582 5.827797 TGCAATTTCCATTCCATCCTAGTAC 59.172 40.000 0.00 0.00 0.00 2.73
1405 1583 6.012337 TGCAATTTCCATTCCATCCTAGTA 57.988 37.500 0.00 0.00 0.00 1.82
1406 1584 4.870636 TGCAATTTCCATTCCATCCTAGT 58.129 39.130 0.00 0.00 0.00 2.57
1407 1585 4.261909 GCTGCAATTTCCATTCCATCCTAG 60.262 45.833 0.00 0.00 0.00 3.02
1408 1586 3.638160 GCTGCAATTTCCATTCCATCCTA 59.362 43.478 0.00 0.00 0.00 2.94
1455 1634 2.550830 ACATCAACAGACCCACAGAC 57.449 50.000 0.00 0.00 0.00 3.51
1497 1676 2.480845 ACTGAAGAACGCACTGGTAAC 58.519 47.619 0.00 0.00 0.00 2.50
1550 1729 1.346395 ACACCGAAGCCTACACAATCA 59.654 47.619 0.00 0.00 0.00 2.57
1552 1731 2.552315 CAAACACCGAAGCCTACACAAT 59.448 45.455 0.00 0.00 0.00 2.71
1558 1737 1.065709 GGATCCAAACACCGAAGCCTA 60.066 52.381 6.95 0.00 0.00 3.93
1559 1738 0.322546 GGATCCAAACACCGAAGCCT 60.323 55.000 6.95 0.00 0.00 4.58
1604 1799 4.400251 ACACAGAAGCCAATCACAATATGG 59.600 41.667 0.00 0.00 37.29 2.74
1606 1801 6.392354 CAAACACAGAAGCCAATCACAATAT 58.608 36.000 0.00 0.00 0.00 1.28
1607 1802 5.278907 CCAAACACAGAAGCCAATCACAATA 60.279 40.000 0.00 0.00 0.00 1.90
1609 1804 3.181477 CCAAACACAGAAGCCAATCACAA 60.181 43.478 0.00 0.00 0.00 3.33
1614 1809 1.688197 CCACCAAACACAGAAGCCAAT 59.312 47.619 0.00 0.00 0.00 3.16
1653 1848 4.524714 TCCAAACACTGAAACCAACAGAAA 59.475 37.500 0.00 0.00 38.55 2.52
1654 1849 4.082845 TCCAAACACTGAAACCAACAGAA 58.917 39.130 0.00 0.00 38.55 3.02
1655 1850 3.691575 TCCAAACACTGAAACCAACAGA 58.308 40.909 0.00 0.00 38.55 3.41
1656 1851 4.654091 ATCCAAACACTGAAACCAACAG 57.346 40.909 0.00 0.00 40.68 3.16
1657 1852 4.464244 TGAATCCAAACACTGAAACCAACA 59.536 37.500 0.00 0.00 0.00 3.33
1658 1853 5.004922 TGAATCCAAACACTGAAACCAAC 57.995 39.130 0.00 0.00 0.00 3.77
1659 1854 5.667539 TTGAATCCAAACACTGAAACCAA 57.332 34.783 0.00 0.00 0.00 3.67
1660 1855 5.667539 TTTGAATCCAAACACTGAAACCA 57.332 34.783 0.00 0.00 37.36 3.67
1661 1856 5.293324 GGTTTTGAATCCAAACACTGAAACC 59.707 40.000 11.28 0.00 41.54 3.27
1662 1857 5.872070 TGGTTTTGAATCCAAACACTGAAAC 59.128 36.000 11.28 0.00 41.54 2.78
1663 1858 6.042638 TGGTTTTGAATCCAAACACTGAAA 57.957 33.333 11.28 0.00 41.54 2.69
1664 1859 5.667539 TGGTTTTGAATCCAAACACTGAA 57.332 34.783 11.28 0.00 41.54 3.02
1665 1860 5.667539 TTGGTTTTGAATCCAAACACTGA 57.332 34.783 11.28 0.00 41.54 3.41
1675 1870 9.325198 ACAAAAAGTAGGATTTGGTTTTGAATC 57.675 29.630 12.22 0.00 40.09 2.52
1676 1871 9.679661 AACAAAAAGTAGGATTTGGTTTTGAAT 57.320 25.926 12.22 0.69 40.09 2.57
1677 1872 8.940952 CAACAAAAAGTAGGATTTGGTTTTGAA 58.059 29.630 12.22 0.00 40.09 2.69
1678 1873 7.550906 CCAACAAAAAGTAGGATTTGGTTTTGA 59.449 33.333 12.22 0.00 40.09 2.69
1679 1874 7.678454 GCCAACAAAAAGTAGGATTTGGTTTTG 60.678 37.037 0.00 0.00 40.09 2.44
1680 1875 6.317642 GCCAACAAAAAGTAGGATTTGGTTTT 59.682 34.615 0.00 0.00 40.09 2.43
1681 1876 5.820423 GCCAACAAAAAGTAGGATTTGGTTT 59.180 36.000 0.00 0.00 40.09 3.27
1682 1877 5.130311 AGCCAACAAAAAGTAGGATTTGGTT 59.870 36.000 0.00 0.00 40.09 3.67
1683 1878 4.653801 AGCCAACAAAAAGTAGGATTTGGT 59.346 37.500 0.00 0.00 40.09 3.67
1684 1879 5.213891 AGCCAACAAAAAGTAGGATTTGG 57.786 39.130 3.63 0.00 40.09 3.28
1685 1880 6.279882 TGAAGCCAACAAAAAGTAGGATTTG 58.720 36.000 0.00 0.00 41.24 2.32
1686 1881 6.098266 ACTGAAGCCAACAAAAAGTAGGATTT 59.902 34.615 0.00 0.00 0.00 2.17
1687 1882 5.598417 ACTGAAGCCAACAAAAAGTAGGATT 59.402 36.000 0.00 0.00 0.00 3.01
1688 1883 5.010012 CACTGAAGCCAACAAAAAGTAGGAT 59.990 40.000 0.00 0.00 0.00 3.24
1689 1884 4.338118 CACTGAAGCCAACAAAAAGTAGGA 59.662 41.667 0.00 0.00 0.00 2.94
1690 1885 4.097892 ACACTGAAGCCAACAAAAAGTAGG 59.902 41.667 0.00 0.00 0.00 3.18
1691 1886 5.248870 ACACTGAAGCCAACAAAAAGTAG 57.751 39.130 0.00 0.00 0.00 2.57
1692 1887 5.652994 AACACTGAAGCCAACAAAAAGTA 57.347 34.783 0.00 0.00 0.00 2.24
1693 1888 4.535526 AACACTGAAGCCAACAAAAAGT 57.464 36.364 0.00 0.00 0.00 2.66
1694 1889 4.093261 CCAAACACTGAAGCCAACAAAAAG 59.907 41.667 0.00 0.00 0.00 2.27
1695 1890 3.999663 CCAAACACTGAAGCCAACAAAAA 59.000 39.130 0.00 0.00 0.00 1.94
1696 1891 3.007398 ACCAAACACTGAAGCCAACAAAA 59.993 39.130 0.00 0.00 0.00 2.44
1697 1892 2.564947 ACCAAACACTGAAGCCAACAAA 59.435 40.909 0.00 0.00 0.00 2.83
1698 1893 2.094286 CACCAAACACTGAAGCCAACAA 60.094 45.455 0.00 0.00 0.00 2.83
1699 1894 1.476085 CACCAAACACTGAAGCCAACA 59.524 47.619 0.00 0.00 0.00 3.33
1700 1895 1.202405 CCACCAAACACTGAAGCCAAC 60.202 52.381 0.00 0.00 0.00 3.77
1701 1896 1.110442 CCACCAAACACTGAAGCCAA 58.890 50.000 0.00 0.00 0.00 4.52
1702 1897 0.257328 TCCACCAAACACTGAAGCCA 59.743 50.000 0.00 0.00 0.00 4.75
1703 1898 1.541588 GATCCACCAAACACTGAAGCC 59.458 52.381 0.00 0.00 0.00 4.35
1704 1899 1.541588 GGATCCACCAAACACTGAAGC 59.458 52.381 6.95 0.00 38.79 3.86
1705 1900 2.862541 TGGATCCACCAAACACTGAAG 58.137 47.619 11.44 0.00 46.75 3.02
1716 1911 2.820178 AGGATTTGGTTTGGATCCACC 58.180 47.619 15.91 14.43 41.43 4.61
1717 1912 6.070824 ACAAATAGGATTTGGTTTGGATCCAC 60.071 38.462 15.91 3.47 41.43 4.02
1718 1913 6.022315 ACAAATAGGATTTGGTTTGGATCCA 58.978 36.000 11.44 11.44 41.43 3.41
1719 1914 6.070824 ACACAAATAGGATTTGGTTTGGATCC 60.071 38.462 4.20 4.20 39.70 3.36
1720 1915 6.935167 ACACAAATAGGATTTGGTTTGGATC 58.065 36.000 14.61 0.00 36.23 3.36
1721 1916 6.933514 ACACAAATAGGATTTGGTTTGGAT 57.066 33.333 14.61 0.00 36.23 3.41
1722 1917 6.463614 CCAACACAAATAGGATTTGGTTTGGA 60.464 38.462 25.10 0.00 42.20 3.53
1723 1918 5.700373 CCAACACAAATAGGATTTGGTTTGG 59.300 40.000 20.75 20.75 38.20 3.28
1724 1919 5.179182 GCCAACACAAATAGGATTTGGTTTG 59.821 40.000 14.61 14.65 36.63 2.93
1725 1920 5.071653 AGCCAACACAAATAGGATTTGGTTT 59.928 36.000 14.61 5.91 36.63 3.27
1726 1921 4.592778 AGCCAACACAAATAGGATTTGGTT 59.407 37.500 14.61 12.26 36.63 3.67
1727 1922 4.159557 AGCCAACACAAATAGGATTTGGT 58.840 39.130 14.61 8.02 36.63 3.67
1728 1923 4.806640 AGCCAACACAAATAGGATTTGG 57.193 40.909 14.61 7.52 37.21 3.28
1729 1924 5.782047 TGAAGCCAACACAAATAGGATTTG 58.218 37.500 9.78 9.78 35.64 2.32
1730 1925 5.567423 GCTGAAGCCAACACAAATAGGATTT 60.567 40.000 0.00 0.00 34.31 2.17
1731 1926 4.082026 GCTGAAGCCAACACAAATAGGATT 60.082 41.667 0.00 0.00 34.31 3.01
1732 1927 3.445096 GCTGAAGCCAACACAAATAGGAT 59.555 43.478 0.00 0.00 34.31 3.24
1733 1928 2.819608 GCTGAAGCCAACACAAATAGGA 59.180 45.455 0.00 0.00 34.31 2.94
1734 1929 2.414559 CGCTGAAGCCAACACAAATAGG 60.415 50.000 0.00 0.00 37.91 2.57
1735 1930 2.226437 ACGCTGAAGCCAACACAAATAG 59.774 45.455 0.00 0.00 37.91 1.73
1736 1931 2.226330 ACGCTGAAGCCAACACAAATA 58.774 42.857 0.00 0.00 37.91 1.40
1737 1932 1.032014 ACGCTGAAGCCAACACAAAT 58.968 45.000 0.00 0.00 37.91 2.32
1754 1949 0.169672 CAGCCTGAATCCAGCAAACG 59.830 55.000 0.00 0.00 39.07 3.60
1777 2055 1.357991 GGAGCAGCAGAAGAACGCTC 61.358 60.000 0.00 0.00 46.58 5.03
1782 2060 0.610174 ACGATGGAGCAGCAGAAGAA 59.390 50.000 0.00 0.00 0.00 2.52
1815 2093 4.275936 AGTTGAAACACATTCCAGCACTAC 59.724 41.667 0.00 0.00 37.22 2.73
1834 2112 3.067106 AGTTTGACGCCACAGATAGTTG 58.933 45.455 0.00 0.00 0.00 3.16
1846 2124 1.518102 CACATTGCACAAGTTTGACGC 59.482 47.619 0.00 2.02 0.00 5.19
1872 2150 1.141053 AGTTCTCCACCAGACCAACAC 59.859 52.381 0.00 0.00 0.00 3.32
1876 2154 1.507140 AACAGTTCTCCACCAGACCA 58.493 50.000 0.00 0.00 0.00 4.02
1890 2175 0.752743 TCAGCAAGGCAGCAAACAGT 60.753 50.000 4.78 0.00 36.85 3.55
1902 2187 2.734606 CCAAATGCACATGTTCAGCAAG 59.265 45.455 12.71 6.74 42.15 4.01
1913 2205 4.669206 AACACAATTCTCCAAATGCACA 57.331 36.364 0.00 0.00 0.00 4.57
1928 2220 5.431765 ACAAATGCCCATGTTTTAACACAA 58.568 33.333 0.00 0.00 42.51 3.33
1943 2235 6.415798 ACAAGTAACAACAAAACAAATGCC 57.584 33.333 0.00 0.00 0.00 4.40
2000 2292 6.261826 CACCAATCACCAGAGAAATTAGATCC 59.738 42.308 0.00 0.00 0.00 3.36
2031 2323 4.858692 CGGCAATAAAAGGATGAACAACAG 59.141 41.667 0.00 0.00 0.00 3.16
2054 2346 0.179200 CAGCAAATACGCGGTCAACC 60.179 55.000 12.47 0.00 36.85 3.77
2058 2350 1.060937 CAGCAGCAAATACGCGGTC 59.939 57.895 12.47 0.00 36.85 4.79
2060 2352 1.060937 GTCAGCAGCAAATACGCGG 59.939 57.895 12.47 0.00 36.85 6.46
2062 2354 1.527793 CGAAGTCAGCAGCAAATACGC 60.528 52.381 0.00 0.00 0.00 4.42
2067 2359 1.509644 CCAGCGAAGTCAGCAGCAAA 61.510 55.000 0.00 0.00 37.01 3.68
2095 2387 9.155975 TCAGCAAAGCAAACTTAAACAAAATTA 57.844 25.926 0.00 0.00 34.05 1.40
2180 2500 6.430925 TCTGAAATTGCTGTGCAGTATTAGTT 59.569 34.615 0.00 0.00 40.61 2.24
2186 2506 6.598850 TGATATTCTGAAATTGCTGTGCAGTA 59.401 34.615 0.00 0.00 40.61 2.74
2188 2508 5.886992 TGATATTCTGAAATTGCTGTGCAG 58.113 37.500 0.00 0.00 40.61 4.41
2190 2510 6.255020 CCTTTGATATTCTGAAATTGCTGTGC 59.745 38.462 0.00 0.00 0.00 4.57
2192 2512 6.335777 GCCTTTGATATTCTGAAATTGCTGT 58.664 36.000 0.00 0.00 0.00 4.40
2209 2529 1.468520 GTAAATGCTCAGCGCCTTTGA 59.531 47.619 2.29 0.00 37.12 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.