Multiple sequence alignment - TraesCS1B01G380100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G380100 chr1B 100.000 5653 0 0 1 5653 613037994 613032342 0.000000e+00 10440.0
1 TraesCS1B01G380100 chr1B 100.000 29 0 0 505 533 550366512 550366540 3.000000e-03 54.7
2 TraesCS1B01G380100 chr1D 94.235 3001 105 33 2178 5149 447561051 447558090 0.000000e+00 4521.0
3 TraesCS1B01G380100 chr1D 90.520 538 45 5 92 625 447563883 447563348 0.000000e+00 706.0
4 TraesCS1B01G380100 chr1D 91.051 514 29 11 5150 5652 447558024 447557517 0.000000e+00 678.0
5 TraesCS1B01G380100 chr1D 91.028 457 29 8 863 1314 447562864 447562415 1.740000e-169 606.0
6 TraesCS1B01G380100 chr1D 81.266 806 98 37 1384 2159 447561819 447561037 2.250000e-168 603.0
7 TraesCS1B01G380100 chr1A 96.688 2385 75 2 2179 4562 543644921 543642540 0.000000e+00 3964.0
8 TraesCS1B01G380100 chr1A 91.503 459 19 5 863 1317 543653471 543653029 1.040000e-171 614.0
9 TraesCS1B01G380100 chr1A 92.768 401 21 4 4965 5365 543642137 543641745 1.770000e-159 573.0
10 TraesCS1B01G380100 chr1A 90.746 389 28 7 4576 4962 543642554 543642172 3.910000e-141 512.0
11 TraesCS1B01G380100 chr1A 89.643 280 28 1 94 373 543655786 543655508 6.970000e-94 355.0
12 TraesCS1B01G380100 chr1A 88.934 244 22 3 384 623 543654684 543654442 4.280000e-76 296.0
13 TraesCS1B01G380100 chr1A 88.194 144 14 2 729 872 543653912 543653772 9.740000e-38 169.0
14 TraesCS1B01G380100 chr1A 95.402 87 4 0 10 96 383419626 383419540 7.640000e-29 139.0
15 TraesCS1B01G380100 chr1A 100.000 29 0 0 505 533 504991906 504991934 3.000000e-03 54.7
16 TraesCS1B01G380100 chr6B 94.737 95 5 0 1 95 28167014 28166920 1.270000e-31 148.0
17 TraesCS1B01G380100 chr7D 94.681 94 5 0 1 94 11941049 11940956 4.560000e-31 147.0
18 TraesCS1B01G380100 chr7D 94.681 94 5 0 1 94 82617713 82617806 4.560000e-31 147.0
19 TraesCS1B01G380100 chr7D 92.632 95 7 0 1 95 634021481 634021575 2.750000e-28 137.0
20 TraesCS1B01G380100 chr2B 94.681 94 5 0 1 94 40506529 40506622 4.560000e-31 147.0
21 TraesCS1B01G380100 chr2B 73.103 290 74 4 3873 4160 117992362 117992075 3.600000e-17 100.0
22 TraesCS1B01G380100 chr2D 72.345 499 124 14 3669 4160 76752344 76751853 1.640000e-30 145.0
23 TraesCS1B01G380100 chr7A 93.617 94 6 0 1 94 323481307 323481400 2.120000e-29 141.0
24 TraesCS1B01G380100 chr3B 92.929 99 4 2 1 97 59942598 59942501 2.120000e-29 141.0
25 TraesCS1B01G380100 chr3B 77.174 184 27 13 451 625 764301685 764301862 6.030000e-15 93.5
26 TraesCS1B01G380100 chr5B 91.837 98 8 0 11 108 19672126 19672029 2.750000e-28 137.0
27 TraesCS1B01G380100 chr4A 78.500 200 38 5 1594 1791 36343617 36343813 5.950000e-25 126.0
28 TraesCS1B01G380100 chr3D 82.000 100 16 2 1608 1705 312895272 312895173 3.630000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G380100 chr1B 613032342 613037994 5652 True 10440.0 10440 100.000000 1 5653 1 chr1B.!!$R1 5652
1 TraesCS1B01G380100 chr1D 447557517 447563883 6366 True 1422.8 4521 89.620000 92 5652 5 chr1D.!!$R1 5560
2 TraesCS1B01G380100 chr1A 543641745 543644921 3176 True 1683.0 3964 93.400667 2179 5365 3 chr1A.!!$R2 3186
3 TraesCS1B01G380100 chr1A 543653029 543655786 2757 True 358.5 614 89.568500 94 1317 4 chr1A.!!$R3 1223

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 1475 0.881796 CCCCCTTTCTTTCGTCAAGC 59.118 55.0 0.00 0.0 31.70 4.01 F
1462 3566 0.307760 GCGTGTGGAGGAAACAACAG 59.692 55.0 0.00 0.0 0.00 3.16 F
1521 3626 0.036952 CCGTGTGACTGGAAGCATCT 60.037 55.0 0.00 0.0 37.60 2.90 F
1781 3894 0.178990 GACTTGAACCTTGGTGGGCT 60.179 55.0 0.00 0.0 41.11 5.19 F
2899 5027 0.179040 TTGGAGTGTCGGGTCAAACC 60.179 55.0 0.00 0.0 37.60 3.27 F
3238 5366 0.809385 CCAGCAATCAGAACTGCCAG 59.191 55.0 4.58 0.0 39.47 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 3607 0.036952 AGATGCTTCCAGTCACACGG 60.037 55.000 0.00 0.0 0.00 4.94 R
2959 5087 0.378257 CATACACATCGCAGTTGGCC 59.622 55.000 0.00 0.0 40.31 5.36 R
3367 5495 0.901124 CTGGTAACTCAGAGGCTGCT 59.099 55.000 1.53 0.0 36.93 4.24 R
3416 5544 1.071471 CTCCACCAACGGCAACTCT 59.929 57.895 0.00 0.0 0.00 3.24 R
3830 5958 0.165944 CTCCAACTTAAAGGCGCACG 59.834 55.000 10.83 0.0 0.00 5.34 R
4936 7068 0.035439 ATCAGTTTGGCACGGTAGGG 60.035 55.000 0.00 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.447624 ACCTTGAAATTAGTGGTTTTCGG 57.552 39.130 0.00 0.00 35.15 4.30
26 27 4.234574 CCTTGAAATTAGTGGTTTTCGGC 58.765 43.478 0.00 0.00 35.15 5.54
27 28 4.261825 CCTTGAAATTAGTGGTTTTCGGCA 60.262 41.667 0.00 0.00 35.15 5.69
28 29 4.231718 TGAAATTAGTGGTTTTCGGCAC 57.768 40.909 0.00 0.00 35.15 5.01
29 30 3.632604 TGAAATTAGTGGTTTTCGGCACA 59.367 39.130 0.00 0.00 35.15 4.57
30 31 4.098044 TGAAATTAGTGGTTTTCGGCACAA 59.902 37.500 0.00 0.00 35.15 3.33
31 32 4.657436 AATTAGTGGTTTTCGGCACAAA 57.343 36.364 0.00 0.00 0.00 2.83
32 33 4.657436 ATTAGTGGTTTTCGGCACAAAA 57.343 36.364 0.00 0.00 0.00 2.44
33 34 2.287393 AGTGGTTTTCGGCACAAAAC 57.713 45.000 12.04 12.04 42.99 2.43
34 35 1.822371 AGTGGTTTTCGGCACAAAACT 59.178 42.857 17.33 1.24 43.18 2.66
35 36 1.923864 GTGGTTTTCGGCACAAAACTG 59.076 47.619 17.33 0.00 43.18 3.16
36 37 1.546476 TGGTTTTCGGCACAAAACTGT 59.454 42.857 17.33 0.00 43.18 3.55
37 38 2.753452 TGGTTTTCGGCACAAAACTGTA 59.247 40.909 17.33 6.53 43.18 2.74
38 39 3.181495 TGGTTTTCGGCACAAAACTGTAG 60.181 43.478 17.33 0.00 43.18 2.74
39 40 3.065648 GGTTTTCGGCACAAAACTGTAGA 59.934 43.478 17.33 0.00 43.18 2.59
40 41 4.439016 GGTTTTCGGCACAAAACTGTAGAA 60.439 41.667 17.33 0.00 43.18 2.10
41 42 5.278604 GTTTTCGGCACAAAACTGTAGAAT 58.721 37.500 12.84 0.00 41.28 2.40
42 43 5.508200 TTTCGGCACAAAACTGTAGAATT 57.492 34.783 0.00 0.00 0.00 2.17
43 44 4.481930 TCGGCACAAAACTGTAGAATTG 57.518 40.909 0.00 0.00 0.00 2.32
44 45 3.880490 TCGGCACAAAACTGTAGAATTGT 59.120 39.130 0.00 0.00 36.49 2.71
53 54 7.649306 ACAAAACTGTAGAATTGTGATTTCTGC 59.351 33.333 6.36 0.00 34.88 4.26
54 55 6.882610 AACTGTAGAATTGTGATTTCTGCA 57.117 33.333 4.56 4.56 0.00 4.41
55 56 6.882610 ACTGTAGAATTGTGATTTCTGCAA 57.117 33.333 5.86 0.00 0.00 4.08
56 57 7.275888 ACTGTAGAATTGTGATTTCTGCAAA 57.724 32.000 5.86 0.00 0.00 3.68
57 58 7.141363 ACTGTAGAATTGTGATTTCTGCAAAC 58.859 34.615 5.86 0.00 0.00 2.93
58 59 6.446318 TGTAGAATTGTGATTTCTGCAAACC 58.554 36.000 2.39 0.00 0.00 3.27
59 60 5.796424 AGAATTGTGATTTCTGCAAACCT 57.204 34.783 0.00 0.00 0.00 3.50
60 61 6.899393 AGAATTGTGATTTCTGCAAACCTA 57.101 33.333 0.00 0.00 0.00 3.08
61 62 6.917533 AGAATTGTGATTTCTGCAAACCTAG 58.082 36.000 0.00 0.00 0.00 3.02
62 63 4.503741 TTGTGATTTCTGCAAACCTAGC 57.496 40.909 0.00 0.00 0.00 3.42
63 64 2.819608 TGTGATTTCTGCAAACCTAGCC 59.180 45.455 0.00 0.00 0.00 3.93
64 65 3.084786 GTGATTTCTGCAAACCTAGCCT 58.915 45.455 0.00 0.00 0.00 4.58
65 66 3.507622 GTGATTTCTGCAAACCTAGCCTT 59.492 43.478 0.00 0.00 0.00 4.35
66 67 3.758554 TGATTTCTGCAAACCTAGCCTTC 59.241 43.478 0.00 0.00 0.00 3.46
67 68 2.949177 TTCTGCAAACCTAGCCTTCA 57.051 45.000 0.00 0.00 0.00 3.02
68 69 2.949177 TCTGCAAACCTAGCCTTCAA 57.051 45.000 0.00 0.00 0.00 2.69
69 70 3.439857 TCTGCAAACCTAGCCTTCAAT 57.560 42.857 0.00 0.00 0.00 2.57
70 71 3.084039 TCTGCAAACCTAGCCTTCAATG 58.916 45.455 0.00 0.00 0.00 2.82
71 72 2.821969 CTGCAAACCTAGCCTTCAATGT 59.178 45.455 0.00 0.00 0.00 2.71
72 73 2.819608 TGCAAACCTAGCCTTCAATGTC 59.180 45.455 0.00 0.00 0.00 3.06
73 74 2.159517 GCAAACCTAGCCTTCAATGTCG 60.160 50.000 0.00 0.00 0.00 4.35
74 75 3.334691 CAAACCTAGCCTTCAATGTCGA 58.665 45.455 0.00 0.00 0.00 4.20
75 76 3.914426 AACCTAGCCTTCAATGTCGAT 57.086 42.857 0.00 0.00 0.00 3.59
76 77 3.185246 ACCTAGCCTTCAATGTCGATG 57.815 47.619 0.00 0.00 0.00 3.84
77 78 2.501723 ACCTAGCCTTCAATGTCGATGT 59.498 45.455 0.00 0.00 0.00 3.06
78 79 3.055094 ACCTAGCCTTCAATGTCGATGTT 60.055 43.478 0.00 0.00 0.00 2.71
79 80 3.941483 CCTAGCCTTCAATGTCGATGTTT 59.059 43.478 0.00 0.00 0.00 2.83
80 81 4.396166 CCTAGCCTTCAATGTCGATGTTTT 59.604 41.667 0.00 0.00 0.00 2.43
81 82 4.853924 AGCCTTCAATGTCGATGTTTTT 57.146 36.364 0.00 0.00 0.00 1.94
249 251 3.304928 GCTATGCAATGGGATCGGAAAAG 60.305 47.826 0.00 0.00 0.00 2.27
260 262 4.562963 GGGATCGGAAAAGGTAATAGCGAT 60.563 45.833 0.00 0.00 0.00 4.58
282 286 7.217070 GCGATGTTACTTGATGACTTTGATTTC 59.783 37.037 0.00 0.00 0.00 2.17
286 290 7.225734 TGTTACTTGATGACTTTGATTTCGTGA 59.774 33.333 0.00 0.00 0.00 4.35
292 296 5.034554 TGACTTTGATTTCGTGATGCTTC 57.965 39.130 0.00 0.00 0.00 3.86
294 298 4.074970 ACTTTGATTTCGTGATGCTTCCT 58.925 39.130 0.00 0.00 0.00 3.36
295 299 4.520492 ACTTTGATTTCGTGATGCTTCCTT 59.480 37.500 0.00 0.00 0.00 3.36
318 322 5.470047 AGTATTTGGTCTCGAGTGAAAGT 57.530 39.130 13.13 4.89 0.00 2.66
322 326 4.402056 TTGGTCTCGAGTGAAAGTCTTT 57.598 40.909 13.13 0.00 32.88 2.52
402 1222 2.500509 TTGACCATGGCAACGTTTTC 57.499 45.000 13.04 0.00 42.51 2.29
403 1223 1.393603 TGACCATGGCAACGTTTTCA 58.606 45.000 13.04 2.06 42.51 2.69
454 1274 7.220491 GCTAGTAGTTGTTCGACCTTTATCTTC 59.780 40.741 0.00 0.00 0.00 2.87
467 1287 6.901081 CCTTTATCTTCAAGGTGAAAACCT 57.099 37.500 0.00 0.00 43.04 3.50
481 1301 6.434340 AGGTGAAAACCTGAGATTTAACCATC 59.566 38.462 15.32 0.00 38.98 3.51
537 1357 1.416401 TGCTCCCTTTCTGAAGACGTT 59.584 47.619 0.00 0.00 34.71 3.99
538 1358 2.631062 TGCTCCCTTTCTGAAGACGTTA 59.369 45.455 0.00 0.00 34.71 3.18
539 1359 2.994578 GCTCCCTTTCTGAAGACGTTAC 59.005 50.000 0.00 0.00 34.71 2.50
541 1361 4.082354 GCTCCCTTTCTGAAGACGTTACTA 60.082 45.833 0.00 0.00 34.71 1.82
542 1362 5.640189 TCCCTTTCTGAAGACGTTACTAG 57.360 43.478 0.00 0.00 34.71 2.57
557 1377 9.228949 AGACGTTACTAGTGAAGAATCTTTCTA 57.771 33.333 5.39 3.29 39.61 2.10
617 1437 8.800972 GTCGTTGTTATAGTTCATCGATTGTTA 58.199 33.333 0.00 0.00 37.82 2.41
626 1446 7.975866 AGTTCATCGATTGTTATTTTGATGC 57.024 32.000 0.00 0.00 34.64 3.91
627 1447 7.765307 AGTTCATCGATTGTTATTTTGATGCT 58.235 30.769 0.00 0.00 34.64 3.79
628 1448 7.912250 AGTTCATCGATTGTTATTTTGATGCTC 59.088 33.333 0.00 0.00 34.64 4.26
629 1449 7.319142 TCATCGATTGTTATTTTGATGCTCA 57.681 32.000 0.00 0.00 34.64 4.26
630 1450 7.760437 TCATCGATTGTTATTTTGATGCTCAA 58.240 30.769 0.00 0.00 34.64 3.02
631 1451 8.407832 TCATCGATTGTTATTTTGATGCTCAAT 58.592 29.630 0.00 0.00 36.11 2.57
632 1452 9.027129 CATCGATTGTTATTTTGATGCTCAATT 57.973 29.630 0.00 0.00 36.11 2.32
633 1453 8.984891 TCGATTGTTATTTTGATGCTCAATTT 57.015 26.923 0.41 0.00 36.11 1.82
634 1454 9.075519 TCGATTGTTATTTTGATGCTCAATTTC 57.924 29.630 0.41 0.00 36.11 2.17
635 1455 8.323140 CGATTGTTATTTTGATGCTCAATTTCC 58.677 33.333 0.41 0.00 36.11 3.13
636 1456 7.903995 TTGTTATTTTGATGCTCAATTTCCC 57.096 32.000 0.41 0.00 36.11 3.97
637 1457 6.405538 TGTTATTTTGATGCTCAATTTCCCC 58.594 36.000 0.41 0.00 36.11 4.81
638 1458 3.979101 TTTTGATGCTCAATTTCCCCC 57.021 42.857 0.41 0.00 36.11 5.40
655 1475 0.881796 CCCCCTTTCTTTCGTCAAGC 59.118 55.000 0.00 0.00 31.70 4.01
656 1476 1.545651 CCCCCTTTCTTTCGTCAAGCT 60.546 52.381 0.00 0.00 31.70 3.74
664 1688 6.017852 CCTTTCTTTCGTCAAGCTAGAGTTTT 60.018 38.462 0.00 0.00 31.70 2.43
691 1715 9.214953 GATCTTGTATAATTTTGCTCTTTGTCG 57.785 33.333 0.00 0.00 0.00 4.35
709 1733 3.558006 TGTCGGCGTGATATTTTATGTGG 59.442 43.478 6.85 0.00 0.00 4.17
711 1735 3.805422 TCGGCGTGATATTTTATGTGGAC 59.195 43.478 6.85 0.00 0.00 4.02
751 1994 5.437060 GGGTATGTCTACATTGATGTTGGT 58.563 41.667 1.46 0.00 41.97 3.67
771 2014 6.320434 TGGTTGTGTCCATCCTAATAATCA 57.680 37.500 0.00 0.00 32.53 2.57
775 2018 8.950210 GGTTGTGTCCATCCTAATAATCATATG 58.050 37.037 0.00 0.00 0.00 1.78
804 2047 5.182487 TGGACGTGTGCTCATTATATTTGT 58.818 37.500 0.00 0.00 0.00 2.83
887 2454 2.731451 CACAGTACACGGATCAGTTGTG 59.269 50.000 12.15 12.15 39.47 3.33
1015 2586 4.230657 GTCCATCATAGTACAGCATCGAC 58.769 47.826 0.00 0.00 0.00 4.20
1017 2588 4.216472 TCCATCATAGTACAGCATCGACTC 59.784 45.833 0.00 0.00 0.00 3.36
1037 2608 2.821366 GTCCATGGCGAGCTGGTG 60.821 66.667 6.96 0.00 34.03 4.17
1038 2609 3.321648 TCCATGGCGAGCTGGTGT 61.322 61.111 6.96 0.00 34.03 4.16
1039 2610 2.821366 CCATGGCGAGCTGGTGTC 60.821 66.667 0.00 0.00 0.00 3.67
1040 2611 2.821366 CATGGCGAGCTGGTGTCC 60.821 66.667 0.00 0.00 0.00 4.02
1041 2612 3.321648 ATGGCGAGCTGGTGTCCA 61.322 61.111 0.00 0.00 0.00 4.02
1042 2613 3.612247 ATGGCGAGCTGGTGTCCAC 62.612 63.158 0.00 0.00 0.00 4.02
1068 2642 0.758123 CTTCATGCTCCCTCCTCCTC 59.242 60.000 0.00 0.00 0.00 3.71
1077 2651 1.204113 CCCTCCTCCTCCACTTGCTT 61.204 60.000 0.00 0.00 0.00 3.91
1135 2710 4.147322 CGAATGCCACCGACACGC 62.147 66.667 0.00 0.00 0.00 5.34
1233 2808 2.711542 CCTCAAGGTAACATCCACCAC 58.288 52.381 0.00 0.00 38.62 4.16
1248 2823 2.415090 CCACCACCGTACGTCTTCTTAG 60.415 54.545 15.21 0.00 0.00 2.18
1295 2873 4.373116 CGCCGTGTACACTGCCCT 62.373 66.667 29.32 0.00 38.14 5.19
1300 2878 0.885879 CGTGTACACTGCCCTAGTCA 59.114 55.000 23.01 0.00 37.60 3.41
1317 2895 6.283694 CCTAGTCATGCTTATGTTTGCTAGA 58.716 40.000 0.00 0.00 0.00 2.43
1318 2896 6.933521 CCTAGTCATGCTTATGTTTGCTAGAT 59.066 38.462 0.00 0.00 0.00 1.98
1319 2897 6.615264 AGTCATGCTTATGTTTGCTAGATG 57.385 37.500 0.00 0.00 0.00 2.90
1321 2899 6.259608 AGTCATGCTTATGTTTGCTAGATGTC 59.740 38.462 0.00 0.00 0.00 3.06
1323 2901 5.102953 TGCTTATGTTTGCTAGATGTCCT 57.897 39.130 0.00 0.00 0.00 3.85
1324 2902 6.233905 TGCTTATGTTTGCTAGATGTCCTA 57.766 37.500 0.00 0.00 0.00 2.94
1326 2904 7.962441 TGCTTATGTTTGCTAGATGTCCTATA 58.038 34.615 0.00 0.00 0.00 1.31
1331 2909 7.754851 TGTTTGCTAGATGTCCTATATACGA 57.245 36.000 0.00 0.00 0.00 3.43
1332 2910 8.173542 TGTTTGCTAGATGTCCTATATACGAA 57.826 34.615 0.00 0.00 0.00 3.85
1333 2911 8.635328 TGTTTGCTAGATGTCCTATATACGAAA 58.365 33.333 0.00 0.00 0.00 3.46
1334 2912 9.472361 GTTTGCTAGATGTCCTATATACGAAAA 57.528 33.333 0.00 0.00 0.00 2.29
1335 2913 9.692749 TTTGCTAGATGTCCTATATACGAAAAG 57.307 33.333 0.00 0.00 0.00 2.27
1336 2914 8.631480 TGCTAGATGTCCTATATACGAAAAGA 57.369 34.615 0.00 0.00 0.00 2.52
1337 2915 8.731605 TGCTAGATGTCCTATATACGAAAAGAG 58.268 37.037 0.00 0.00 0.00 2.85
1338 2916 7.698970 GCTAGATGTCCTATATACGAAAAGAGC 59.301 40.741 0.00 0.00 0.00 4.09
1339 2917 7.526142 AGATGTCCTATATACGAAAAGAGCA 57.474 36.000 0.00 0.00 0.00 4.26
1341 2919 6.710597 TGTCCTATATACGAAAAGAGCAGT 57.289 37.500 0.00 0.00 0.00 4.40
1343 2921 5.402867 GTCCTATATACGAAAAGAGCAGTGC 59.597 44.000 7.13 7.13 0.00 4.40
1359 2944 3.773630 GCGCGCTTCGTTGTGCTA 61.774 61.111 26.67 0.00 40.87 3.49
1363 2948 0.451135 GCGCTTCGTTGTGCTACTTG 60.451 55.000 0.00 0.00 40.01 3.16
1364 2949 0.451135 CGCTTCGTTGTGCTACTTGC 60.451 55.000 0.00 0.00 43.25 4.01
1370 2956 3.947626 TCGTTGTGCTACTTGCTTTTTC 58.052 40.909 0.00 0.00 43.37 2.29
1376 2962 2.034053 TGCTACTTGCTTTTTCGGTTGG 59.966 45.455 0.00 0.00 43.37 3.77
1377 2963 2.607038 GCTACTTGCTTTTTCGGTTGGG 60.607 50.000 0.00 0.00 38.95 4.12
1449 3553 0.664166 GCTGATTGGTTTGGCGTGTG 60.664 55.000 0.00 0.00 0.00 3.82
1451 3555 0.466372 TGATTGGTTTGGCGTGTGGA 60.466 50.000 0.00 0.00 0.00 4.02
1462 3566 0.307760 GCGTGTGGAGGAAACAACAG 59.692 55.000 0.00 0.00 0.00 3.16
1466 3570 3.491964 CGTGTGGAGGAAACAACAGAGTA 60.492 47.826 0.00 0.00 0.00 2.59
1498 3603 4.821805 TGTGGTCTTTGGATGAGTCTTTTC 59.178 41.667 0.00 0.00 0.00 2.29
1500 3605 5.180304 GTGGTCTTTGGATGAGTCTTTTCTC 59.820 44.000 0.00 0.00 35.28 2.87
1501 3606 5.163205 TGGTCTTTGGATGAGTCTTTTCTCA 60.163 40.000 0.00 0.00 46.39 3.27
1502 3607 5.180304 GGTCTTTGGATGAGTCTTTTCTCAC 59.820 44.000 0.00 0.00 45.40 3.51
1503 3608 5.180304 GTCTTTGGATGAGTCTTTTCTCACC 59.820 44.000 0.00 4.17 45.40 4.02
1504 3609 3.319137 TGGATGAGTCTTTTCTCACCG 57.681 47.619 0.00 0.00 45.40 4.94
1505 3610 2.632996 TGGATGAGTCTTTTCTCACCGT 59.367 45.455 0.00 0.00 45.40 4.83
1507 3612 3.555168 GGATGAGTCTTTTCTCACCGTGT 60.555 47.826 0.00 0.00 45.40 4.49
1508 3613 2.821546 TGAGTCTTTTCTCACCGTGTG 58.178 47.619 0.00 0.00 39.20 3.82
1509 3614 2.429250 TGAGTCTTTTCTCACCGTGTGA 59.571 45.455 6.57 6.57 40.50 3.58
1510 3615 2.795470 GAGTCTTTTCTCACCGTGTGAC 59.205 50.000 2.77 2.38 37.67 3.67
1511 3616 2.431057 AGTCTTTTCTCACCGTGTGACT 59.569 45.455 2.77 4.26 37.67 3.41
1513 3618 1.867233 CTTTTCTCACCGTGTGACTGG 59.133 52.381 2.77 0.00 37.67 4.00
1514 3619 1.116308 TTTCTCACCGTGTGACTGGA 58.884 50.000 2.77 0.00 37.67 3.86
1515 3620 1.116308 TTCTCACCGTGTGACTGGAA 58.884 50.000 2.77 3.77 37.67 3.53
1516 3621 0.673985 TCTCACCGTGTGACTGGAAG 59.326 55.000 0.00 0.00 37.67 3.46
1517 3622 0.946221 CTCACCGTGTGACTGGAAGC 60.946 60.000 0.00 0.00 37.67 3.86
1518 3623 1.227527 CACCGTGTGACTGGAAGCA 60.228 57.895 1.53 0.00 37.60 3.91
1519 3624 0.603707 CACCGTGTGACTGGAAGCAT 60.604 55.000 1.53 0.00 37.60 3.79
1520 3625 0.320771 ACCGTGTGACTGGAAGCATC 60.321 55.000 1.53 0.00 37.60 3.91
1521 3626 0.036952 CCGTGTGACTGGAAGCATCT 60.037 55.000 0.00 0.00 37.60 2.90
1522 3627 1.609061 CCGTGTGACTGGAAGCATCTT 60.609 52.381 0.00 0.00 37.60 2.40
1523 3628 1.728971 CGTGTGACTGGAAGCATCTTC 59.271 52.381 0.00 0.00 37.60 2.87
1524 3629 2.611473 CGTGTGACTGGAAGCATCTTCT 60.611 50.000 6.54 0.00 37.60 2.85
1525 3630 3.406764 GTGTGACTGGAAGCATCTTCTT 58.593 45.455 6.54 0.00 37.60 2.52
1526 3631 3.817647 GTGTGACTGGAAGCATCTTCTTT 59.182 43.478 6.54 0.00 37.60 2.52
1527 3632 4.276926 GTGTGACTGGAAGCATCTTCTTTT 59.723 41.667 6.54 0.00 37.60 2.27
1528 3633 5.470098 GTGTGACTGGAAGCATCTTCTTTTA 59.530 40.000 6.54 0.00 37.60 1.52
1534 3639 5.757886 TGGAAGCATCTTCTTTTAAACACG 58.242 37.500 6.54 0.00 0.00 4.49
1562 3667 6.092670 ACAATCACAAGTACTCACATACATGC 59.907 38.462 0.00 0.00 28.89 4.06
1563 3668 5.146010 TCACAAGTACTCACATACATGCA 57.854 39.130 0.00 0.00 28.89 3.96
1564 3669 4.929211 TCACAAGTACTCACATACATGCAC 59.071 41.667 0.00 0.00 28.89 4.57
1567 3672 2.170607 AGTACTCACATACATGCACCCC 59.829 50.000 0.00 0.00 0.00 4.95
1587 3700 1.635844 CTCCTATAAACGCACGCACA 58.364 50.000 0.00 0.00 0.00 4.57
1590 3703 3.985008 TCCTATAAACGCACGCACATAT 58.015 40.909 0.00 0.00 0.00 1.78
1591 3704 4.373527 TCCTATAAACGCACGCACATATT 58.626 39.130 0.00 0.00 0.00 1.28
1594 3707 5.619607 CCTATAAACGCACGCACATATTTTC 59.380 40.000 0.00 0.00 0.00 2.29
1598 3711 4.452890 ACGCACGCACATATTTTCTATC 57.547 40.909 0.00 0.00 0.00 2.08
1599 3712 4.119862 ACGCACGCACATATTTTCTATCT 58.880 39.130 0.00 0.00 0.00 1.98
1604 3717 7.148738 CGCACGCACATATTTTCTATCTCTATT 60.149 37.037 0.00 0.00 0.00 1.73
1625 3738 9.547753 TCTATTAACACCTTCAAGATATTGAGC 57.452 33.333 2.58 0.00 31.87 4.26
1627 3740 4.574674 ACACCTTCAAGATATTGAGCCA 57.425 40.909 2.58 0.00 31.87 4.75
1631 3744 3.949754 CCTTCAAGATATTGAGCCAGCAA 59.050 43.478 2.58 0.00 31.87 3.91
1637 3750 6.658816 TCAAGATATTGAGCCAGCAAAACTTA 59.341 34.615 0.00 0.00 0.00 2.24
1645 3758 5.477984 TGAGCCAGCAAAACTTATTGAGATT 59.522 36.000 0.00 0.00 31.84 2.40
1649 3762 5.796935 CCAGCAAAACTTATTGAGATTGACG 59.203 40.000 0.00 0.00 31.73 4.35
1652 3765 7.591057 CAGCAAAACTTATTGAGATTGACGAAA 59.409 33.333 0.00 0.00 31.73 3.46
1658 3771 8.722480 ACTTATTGAGATTGACGAAATCATCA 57.278 30.769 14.85 12.38 46.21 3.07
1659 3772 8.607459 ACTTATTGAGATTGACGAAATCATCAC 58.393 33.333 14.85 6.70 46.21 3.06
1664 3777 4.564372 AGATTGACGAAATCATCACAGACG 59.436 41.667 14.85 0.00 46.21 4.18
1666 3779 1.992667 GACGAAATCATCACAGACGCA 59.007 47.619 0.00 0.00 0.00 5.24
1669 3782 2.347016 CGAAATCATCACAGACGCATCG 60.347 50.000 0.00 0.00 0.00 3.84
1670 3783 2.299993 AATCATCACAGACGCATCGT 57.700 45.000 0.00 0.00 45.10 3.73
1671 3784 3.436700 AATCATCACAGACGCATCGTA 57.563 42.857 0.00 0.00 41.37 3.43
1687 3800 0.381089 CGTAGTCGATGGGAGTGTCC 59.619 60.000 0.00 0.00 39.71 4.02
1700 3813 2.370849 GGAGTGTCCCCTTCACTAAACA 59.629 50.000 0.00 0.00 44.68 2.83
1707 3820 6.001460 TGTCCCCTTCACTAAACAAACATAG 58.999 40.000 0.00 0.00 0.00 2.23
1708 3821 5.007682 TCCCCTTCACTAAACAAACATAGC 58.992 41.667 0.00 0.00 0.00 2.97
1709 3822 4.764823 CCCCTTCACTAAACAAACATAGCA 59.235 41.667 0.00 0.00 0.00 3.49
1711 3824 5.106157 CCCTTCACTAAACAAACATAGCAGG 60.106 44.000 0.00 0.00 0.00 4.85
1730 3843 9.868160 ATAGCAGGAAAGCCTAAAATAAATACT 57.132 29.630 0.00 0.00 44.80 2.12
1758 3871 6.974932 AAATATGAGCACTAGTGTCAAGTG 57.025 37.500 23.44 0.00 45.80 3.16
1780 3893 1.179174 GGACTTGAACCTTGGTGGGC 61.179 60.000 0.00 0.00 41.11 5.36
1781 3894 0.178990 GACTTGAACCTTGGTGGGCT 60.179 55.000 0.00 0.00 41.11 5.19
1785 3898 1.152546 GAACCTTGGTGGGCTGGTT 60.153 57.895 0.00 0.00 44.43 3.67
1787 3900 2.283173 CCTTGGTGGGCTGGTTCC 60.283 66.667 0.00 0.00 0.00 3.62
1788 3901 2.520458 CTTGGTGGGCTGGTTCCA 59.480 61.111 0.00 0.00 0.00 3.53
1801 3922 1.633432 TGGTTCCACCTAAGTCATGGG 59.367 52.381 0.00 0.00 39.58 4.00
1803 3924 2.092914 GGTTCCACCTAAGTCATGGGAG 60.093 54.545 0.00 0.00 34.73 4.30
1806 3927 1.407437 CCACCTAAGTCATGGGAGTGC 60.407 57.143 0.00 0.00 0.00 4.40
1809 3930 0.811616 CTAAGTCATGGGAGTGCGGC 60.812 60.000 0.00 0.00 0.00 6.53
1811 3932 1.264749 AAGTCATGGGAGTGCGGCTA 61.265 55.000 0.00 0.00 0.00 3.93
1823 3944 2.472909 GCGGCTAGATGGCACCAAC 61.473 63.158 0.00 0.00 41.89 3.77
1866 3987 4.755411 TGGGCAGATTTTCTACGTCTTAG 58.245 43.478 0.00 0.00 0.00 2.18
1867 3988 4.464951 TGGGCAGATTTTCTACGTCTTAGA 59.535 41.667 0.00 0.00 34.77 2.10
1928 4051 7.835822 AGTAACAGATATATGCAAGCTCCTAG 58.164 38.462 0.00 0.00 0.00 3.02
1964 4087 7.261325 AGACTTACTATCGACGTGTTAGTAGA 58.739 38.462 0.00 0.00 36.93 2.59
2039 4162 9.780186 AGTACCTTTTATGAATAATAGAGGCAC 57.220 33.333 0.00 3.84 32.78 5.01
2040 4163 9.000486 GTACCTTTTATGAATAATAGAGGCACC 58.000 37.037 3.05 0.00 32.78 5.01
2041 4164 7.582719 ACCTTTTATGAATAATAGAGGCACCA 58.417 34.615 3.05 0.00 32.78 4.17
2042 4165 8.058847 ACCTTTTATGAATAATAGAGGCACCAA 58.941 33.333 3.05 0.00 32.78 3.67
2046 4169 9.866655 TTTATGAATAATAGAGGCACCAATCTT 57.133 29.630 0.00 0.00 0.00 2.40
2047 4170 7.756395 ATGAATAATAGAGGCACCAATCTTG 57.244 36.000 0.00 0.00 0.00 3.02
2048 4171 6.662755 TGAATAATAGAGGCACCAATCTTGT 58.337 36.000 0.00 0.00 0.00 3.16
2049 4172 7.801104 TGAATAATAGAGGCACCAATCTTGTA 58.199 34.615 0.00 0.00 0.00 2.41
2096 4224 8.570488 TGAAACATCATCATATTTGTATGAGGC 58.430 33.333 5.49 0.00 39.53 4.70
2117 4245 7.073457 AGGCCTAAATTTTAAAACCACATGT 57.927 32.000 1.29 0.00 0.00 3.21
2125 4253 9.625747 AAATTTTAAAACCACATGTTCTCCATT 57.374 25.926 1.97 0.00 35.67 3.16
2320 4448 3.023832 GCAAACTATTGTATGGGTGGCT 58.976 45.455 0.00 0.00 38.85 4.75
2390 4518 4.157105 TCTCTGACGACGGAAATATTGTCA 59.843 41.667 0.00 5.04 36.98 3.58
2884 5012 7.946219 AGAATATTATCAAGGCATGTCATTGGA 59.054 33.333 0.00 0.00 37.11 3.53
2899 5027 0.179040 TTGGAGTGTCGGGTCAAACC 60.179 55.000 0.00 0.00 37.60 3.27
2959 5087 5.983118 GGTGGTCTATTTTTCACAACCAAAG 59.017 40.000 0.00 0.00 38.43 2.77
3085 5213 2.622064 ATAGTTGGAATCTGGGCGAC 57.378 50.000 0.00 0.00 0.00 5.19
3115 5243 2.503356 AGGCTGTAGGAGAAATGTCCAG 59.497 50.000 0.00 0.00 39.34 3.86
3175 5303 7.445945 AGCAGGATAGGTTCTATACAATCAAC 58.554 38.462 0.64 0.00 0.00 3.18
3200 5328 1.405105 TGAAACTGCCTGACAAAGCAC 59.595 47.619 0.00 0.00 34.68 4.40
3202 5330 1.473258 AACTGCCTGACAAAGCACAA 58.527 45.000 0.00 0.00 34.68 3.33
3238 5366 0.809385 CCAGCAATCAGAACTGCCAG 59.191 55.000 4.58 0.00 39.47 4.85
3367 5495 9.837681 TCTCTGGATAACATTCATATAAGGGTA 57.162 33.333 0.00 0.00 0.00 3.69
3406 5534 4.515191 CCAGATTCAAGAACCAAGAAACGA 59.485 41.667 0.00 0.00 0.00 3.85
3415 5543 1.818674 ACCAAGAAACGATGGATTGCC 59.181 47.619 0.00 0.00 39.12 4.52
3523 5651 5.636965 CAGTATGAATCTTGCTAAGGGATCG 59.363 44.000 0.00 0.00 39.69 3.69
3629 5757 4.407621 TGTTCAAAGGAGTTCTACCAGACA 59.592 41.667 0.00 0.00 0.00 3.41
3655 5783 3.838244 ATAATGGCGGTGAAGAAGCTA 57.162 42.857 0.00 0.00 0.00 3.32
3667 5795 3.157949 AAGCTAGAGGGCCTCCGC 61.158 66.667 29.62 28.96 38.33 5.54
3754 5882 7.262048 TGATTCAACTACTTGGTTTTTGTTCC 58.738 34.615 0.00 0.00 0.00 3.62
3828 5956 7.675161 TGGATCATCATCTGTTTAGGAGTAA 57.325 36.000 0.00 0.00 0.00 2.24
3830 5958 6.931840 GGATCATCATCTGTTTAGGAGTAACC 59.068 42.308 0.00 0.00 39.35 2.85
4263 6391 7.944061 ACATTGATTGATTCTGAACTTGTCAA 58.056 30.769 6.62 6.62 35.22 3.18
4494 6624 8.749026 TTATCTACGAAACTAGATCAGGACTT 57.251 34.615 0.00 0.00 35.48 3.01
4495 6625 6.438259 TCTACGAAACTAGATCAGGACTTG 57.562 41.667 0.00 0.00 0.00 3.16
4556 6686 3.257375 TGTATGGTCTCTTGTAGTGCGTT 59.743 43.478 0.00 0.00 0.00 4.84
4557 6687 2.902705 TGGTCTCTTGTAGTGCGTTT 57.097 45.000 0.00 0.00 0.00 3.60
4558 6688 3.188159 TGGTCTCTTGTAGTGCGTTTT 57.812 42.857 0.00 0.00 0.00 2.43
4559 6689 3.537580 TGGTCTCTTGTAGTGCGTTTTT 58.462 40.909 0.00 0.00 0.00 1.94
4583 6713 1.292061 TTTTTGCGTGAGTAGTGCGT 58.708 45.000 0.00 0.00 0.00 5.24
4596 6726 4.509616 AGTAGTGCGTATTGTTGGCATAA 58.490 39.130 0.00 0.00 39.14 1.90
4607 6737 8.015087 CGTATTGTTGGCATAATACTTATGTGG 58.985 37.037 22.12 9.57 43.81 4.17
4610 6740 5.592282 TGTTGGCATAATACTTATGTGGTGG 59.408 40.000 8.28 0.00 43.81 4.61
4619 6749 2.210116 CTTATGTGGTGGTGTATCGGC 58.790 52.381 0.00 0.00 0.00 5.54
4624 6754 1.066716 GTGGTGGTGTATCGGCTTGTA 60.067 52.381 0.00 0.00 0.00 2.41
4625 6755 1.624312 TGGTGGTGTATCGGCTTGTAA 59.376 47.619 0.00 0.00 0.00 2.41
4626 6756 2.237643 TGGTGGTGTATCGGCTTGTAAT 59.762 45.455 0.00 0.00 0.00 1.89
4627 6757 3.451540 TGGTGGTGTATCGGCTTGTAATA 59.548 43.478 0.00 0.00 0.00 0.98
4628 6758 4.056050 GGTGGTGTATCGGCTTGTAATAG 58.944 47.826 0.00 0.00 0.00 1.73
4629 6759 4.442472 GGTGGTGTATCGGCTTGTAATAGT 60.442 45.833 0.00 0.00 0.00 2.12
4784 6915 2.534042 TTTTCCTGTGTGGTTTCCCA 57.466 45.000 0.00 0.00 38.87 4.37
4809 6941 0.741221 GAAAGCAGCCCTACAGGTCG 60.741 60.000 0.00 0.00 38.26 4.79
4905 7037 1.001406 AGTGTAGTTGGTGAGAGCAGC 59.999 52.381 0.00 0.00 42.72 5.25
4914 7046 2.235155 TGGTGAGAGCAGCGGTTATAAA 59.765 45.455 0.00 0.00 45.27 1.40
4917 7049 3.552294 GTGAGAGCAGCGGTTATAAACTC 59.448 47.826 0.00 0.00 0.00 3.01
4954 7086 1.122632 TCCCTACCGTGCCAAACTGA 61.123 55.000 0.00 0.00 0.00 3.41
4977 7141 2.561478 AGACAGGCCGAAAGCTAAAA 57.439 45.000 0.00 0.00 43.05 1.52
5011 7175 2.765807 CGATCCCCTCACCTGCCT 60.766 66.667 0.00 0.00 0.00 4.75
5159 7391 1.598962 CATTGCCGCCCGATCAGAT 60.599 57.895 0.00 0.00 0.00 2.90
5160 7392 1.149174 ATTGCCGCCCGATCAGATT 59.851 52.632 0.00 0.00 0.00 2.40
5161 7393 0.466189 ATTGCCGCCCGATCAGATTT 60.466 50.000 0.00 0.00 0.00 2.17
5251 7485 4.510038 ACTGAAGAACAACATTGGATGC 57.490 40.909 0.00 0.00 0.00 3.91
5252 7486 4.147321 ACTGAAGAACAACATTGGATGCT 58.853 39.130 0.00 0.00 0.00 3.79
5255 7489 5.531634 TGAAGAACAACATTGGATGCTTTC 58.468 37.500 0.00 0.00 0.00 2.62
5268 7502 5.067273 TGGATGCTTTCTTTTTCTCCGTTA 58.933 37.500 0.00 0.00 0.00 3.18
5297 7531 8.722342 AATAAACATGTTTAGTGCGTTTACTG 57.278 30.769 29.25 0.00 38.30 2.74
5312 7546 4.151689 CGTTTACTGCTTCAGAAAATCGGA 59.848 41.667 0.29 0.00 35.18 4.55
5355 7589 6.831353 CACTAGATGAAACTCTCCTCCTCTAA 59.169 42.308 0.00 0.00 0.00 2.10
5396 7630 8.098286 TGATTGCAATGATTTGAAGGAGAAAAT 58.902 29.630 18.59 0.00 34.60 1.82
5410 7644 8.826765 TGAAGGAGAAAATATCAAGAACCTACT 58.173 33.333 0.00 0.00 0.00 2.57
5429 7663 6.935208 ACCTACTGTTATTGAACAAGAAGGAC 59.065 38.462 14.73 0.00 44.90 3.85
5462 7696 4.557205 AGAACTCACGTTGTAACTGATCC 58.443 43.478 0.00 0.00 32.39 3.36
5573 7816 0.320771 ATGTCCACCGTGTCAGCTTC 60.321 55.000 0.00 0.00 0.00 3.86
5641 7884 7.065324 CAGAGCATTTATTTTCCAATTGCACAT 59.935 33.333 0.00 0.00 35.66 3.21
5646 7889 2.747396 TTTCCAATTGCACATGCCTC 57.253 45.000 0.00 0.00 41.18 4.70
5649 7892 2.250031 TCCAATTGCACATGCCTCTTT 58.750 42.857 0.00 0.00 41.18 2.52
5651 7894 3.831333 TCCAATTGCACATGCCTCTTTAA 59.169 39.130 0.00 0.00 41.18 1.52
5652 7895 3.928375 CCAATTGCACATGCCTCTTTAAC 59.072 43.478 0.00 0.00 41.18 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.427214 CCGAAAACCACTAATTTCAAGGTTAA 58.573 34.615 0.00 0.00 41.43 2.01
1 2 6.515365 GCCGAAAACCACTAATTTCAAGGTTA 60.515 38.462 0.00 0.00 41.43 2.85
2 3 5.737922 GCCGAAAACCACTAATTTCAAGGTT 60.738 40.000 0.00 0.00 43.96 3.50
3 4 4.261867 GCCGAAAACCACTAATTTCAAGGT 60.262 41.667 0.00 0.00 35.72 3.50
4 5 4.234574 GCCGAAAACCACTAATTTCAAGG 58.765 43.478 0.00 0.00 35.72 3.61
5 6 4.679654 GTGCCGAAAACCACTAATTTCAAG 59.320 41.667 0.00 0.00 35.72 3.02
6 7 4.098044 TGTGCCGAAAACCACTAATTTCAA 59.902 37.500 0.00 0.00 35.72 2.69
7 8 3.632604 TGTGCCGAAAACCACTAATTTCA 59.367 39.130 0.00 0.00 35.72 2.69
8 9 4.231718 TGTGCCGAAAACCACTAATTTC 57.768 40.909 0.00 0.00 33.26 2.17
9 10 4.657436 TTGTGCCGAAAACCACTAATTT 57.343 36.364 0.00 0.00 33.26 1.82
10 11 4.657436 TTTGTGCCGAAAACCACTAATT 57.343 36.364 0.00 0.00 33.26 1.40
11 12 4.098807 AGTTTTGTGCCGAAAACCACTAAT 59.901 37.500 13.87 0.00 43.84 1.73
12 13 3.444388 AGTTTTGTGCCGAAAACCACTAA 59.556 39.130 13.87 0.00 43.84 2.24
13 14 3.018149 AGTTTTGTGCCGAAAACCACTA 58.982 40.909 13.87 0.00 43.84 2.74
14 15 1.822371 AGTTTTGTGCCGAAAACCACT 59.178 42.857 13.87 0.00 43.84 4.00
15 16 1.923864 CAGTTTTGTGCCGAAAACCAC 59.076 47.619 13.87 0.00 43.84 4.16
16 17 1.546476 ACAGTTTTGTGCCGAAAACCA 59.454 42.857 13.87 0.00 43.84 3.67
17 18 2.287393 ACAGTTTTGTGCCGAAAACC 57.713 45.000 13.87 1.46 43.84 3.27
18 19 4.281525 TCTACAGTTTTGTGCCGAAAAC 57.718 40.909 10.86 10.86 43.35 2.43
19 20 4.966965 TTCTACAGTTTTGTGCCGAAAA 57.033 36.364 0.00 0.00 38.23 2.29
20 21 5.163602 ACAATTCTACAGTTTTGTGCCGAAA 60.164 36.000 0.00 0.00 38.23 3.46
21 22 4.336993 ACAATTCTACAGTTTTGTGCCGAA 59.663 37.500 0.00 0.00 38.23 4.30
22 23 3.880490 ACAATTCTACAGTTTTGTGCCGA 59.120 39.130 0.00 0.00 38.23 5.54
23 24 3.974401 CACAATTCTACAGTTTTGTGCCG 59.026 43.478 11.33 0.00 41.51 5.69
24 25 5.181690 TCACAATTCTACAGTTTTGTGCC 57.818 39.130 15.76 0.00 45.30 5.01
25 26 7.649306 AGAAATCACAATTCTACAGTTTTGTGC 59.351 33.333 15.76 7.54 45.30 4.57
26 27 8.961092 CAGAAATCACAATTCTACAGTTTTGTG 58.039 33.333 15.00 15.00 46.43 3.33
27 28 7.649306 GCAGAAATCACAATTCTACAGTTTTGT 59.351 33.333 0.00 0.00 41.39 2.83
28 29 7.648908 TGCAGAAATCACAATTCTACAGTTTTG 59.351 33.333 0.00 0.00 35.43 2.44
29 30 7.715657 TGCAGAAATCACAATTCTACAGTTTT 58.284 30.769 0.00 0.00 35.43 2.43
30 31 7.275888 TGCAGAAATCACAATTCTACAGTTT 57.724 32.000 0.00 0.00 35.43 2.66
31 32 6.882610 TGCAGAAATCACAATTCTACAGTT 57.117 33.333 0.00 0.00 35.43 3.16
32 33 6.882610 TTGCAGAAATCACAATTCTACAGT 57.117 33.333 0.00 0.00 35.43 3.55
33 34 6.583806 GGTTTGCAGAAATCACAATTCTACAG 59.416 38.462 0.00 0.00 35.43 2.74
34 35 6.265196 AGGTTTGCAGAAATCACAATTCTACA 59.735 34.615 0.00 0.00 35.43 2.74
35 36 6.681777 AGGTTTGCAGAAATCACAATTCTAC 58.318 36.000 0.00 0.00 35.43 2.59
36 37 6.899393 AGGTTTGCAGAAATCACAATTCTA 57.101 33.333 0.00 0.00 35.43 2.10
37 38 5.796424 AGGTTTGCAGAAATCACAATTCT 57.204 34.783 0.00 0.00 37.62 2.40
38 39 5.574443 GCTAGGTTTGCAGAAATCACAATTC 59.426 40.000 0.00 0.00 0.00 2.17
39 40 5.473039 GCTAGGTTTGCAGAAATCACAATT 58.527 37.500 0.00 0.00 0.00 2.32
40 41 4.082026 GGCTAGGTTTGCAGAAATCACAAT 60.082 41.667 0.00 0.00 0.00 2.71
41 42 3.255642 GGCTAGGTTTGCAGAAATCACAA 59.744 43.478 0.00 0.00 0.00 3.33
42 43 2.819608 GGCTAGGTTTGCAGAAATCACA 59.180 45.455 0.00 0.00 0.00 3.58
43 44 3.084786 AGGCTAGGTTTGCAGAAATCAC 58.915 45.455 0.00 0.00 0.00 3.06
44 45 3.439857 AGGCTAGGTTTGCAGAAATCA 57.560 42.857 0.00 0.00 0.00 2.57
45 46 3.758554 TGAAGGCTAGGTTTGCAGAAATC 59.241 43.478 0.00 0.00 0.00 2.17
46 47 3.766545 TGAAGGCTAGGTTTGCAGAAAT 58.233 40.909 0.00 0.00 0.00 2.17
47 48 3.222173 TGAAGGCTAGGTTTGCAGAAA 57.778 42.857 0.00 0.00 0.00 2.52
48 49 2.949177 TGAAGGCTAGGTTTGCAGAA 57.051 45.000 0.00 0.00 0.00 3.02
49 50 2.949177 TTGAAGGCTAGGTTTGCAGA 57.051 45.000 0.00 0.00 0.00 4.26
50 51 2.821969 ACATTGAAGGCTAGGTTTGCAG 59.178 45.455 0.00 0.00 0.00 4.41
51 52 2.819608 GACATTGAAGGCTAGGTTTGCA 59.180 45.455 0.00 0.00 0.00 4.08
52 53 2.159517 CGACATTGAAGGCTAGGTTTGC 60.160 50.000 0.00 0.00 0.00 3.68
53 54 3.334691 TCGACATTGAAGGCTAGGTTTG 58.665 45.455 0.00 0.00 0.00 2.93
54 55 3.695830 TCGACATTGAAGGCTAGGTTT 57.304 42.857 0.00 0.00 0.00 3.27
55 56 3.055094 ACATCGACATTGAAGGCTAGGTT 60.055 43.478 0.00 0.00 0.00 3.50
56 57 2.501723 ACATCGACATTGAAGGCTAGGT 59.498 45.455 0.00 0.00 0.00 3.08
57 58 3.185246 ACATCGACATTGAAGGCTAGG 57.815 47.619 0.00 0.00 0.00 3.02
58 59 5.551760 AAAACATCGACATTGAAGGCTAG 57.448 39.130 0.00 0.00 0.00 3.42
59 60 5.957842 AAAAACATCGACATTGAAGGCTA 57.042 34.783 0.00 0.00 0.00 3.93
60 61 4.853924 AAAAACATCGACATTGAAGGCT 57.146 36.364 0.00 0.00 0.00 4.58
78 79 2.360483 TCGCCTGAGTGAATTGCAAAAA 59.640 40.909 1.71 0.00 0.00 1.94
79 80 1.952990 TCGCCTGAGTGAATTGCAAAA 59.047 42.857 1.71 0.00 0.00 2.44
80 81 1.536766 CTCGCCTGAGTGAATTGCAAA 59.463 47.619 1.71 0.00 37.46 3.68
81 82 1.159285 CTCGCCTGAGTGAATTGCAA 58.841 50.000 0.00 0.00 37.46 4.08
82 83 1.300971 GCTCGCCTGAGTGAATTGCA 61.301 55.000 0.00 0.00 44.48 4.08
83 84 1.427020 GCTCGCCTGAGTGAATTGC 59.573 57.895 0.00 0.00 44.48 3.56
84 85 0.674581 TGGCTCGCCTGAGTGAATTG 60.675 55.000 9.65 0.00 44.48 2.32
85 86 0.392193 CTGGCTCGCCTGAGTGAATT 60.392 55.000 9.65 0.00 44.48 2.17
86 87 1.220206 CTGGCTCGCCTGAGTGAAT 59.780 57.895 9.65 0.00 44.48 2.57
87 88 1.260538 ATCTGGCTCGCCTGAGTGAA 61.261 55.000 19.83 0.58 45.06 3.18
88 89 1.683707 ATCTGGCTCGCCTGAGTGA 60.684 57.895 19.83 7.01 45.06 3.41
89 90 1.521010 CATCTGGCTCGCCTGAGTG 60.521 63.158 19.83 14.51 45.06 3.51
90 91 2.898738 CATCTGGCTCGCCTGAGT 59.101 61.111 19.83 8.24 45.06 3.41
249 251 6.924060 AGTCATCAAGTAACATCGCTATTACC 59.076 38.462 0.00 0.00 32.67 2.85
260 262 7.225734 TCACGAAATCAAAGTCATCAAGTAACA 59.774 33.333 0.00 0.00 0.00 2.41
282 286 4.876107 ACCAAATACTAAGGAAGCATCACG 59.124 41.667 0.00 0.00 0.00 4.35
286 290 5.128827 TCGAGACCAAATACTAAGGAAGCAT 59.871 40.000 0.00 0.00 0.00 3.79
292 296 5.578005 TCACTCGAGACCAAATACTAAGG 57.422 43.478 21.68 0.00 0.00 2.69
294 298 6.989659 ACTTTCACTCGAGACCAAATACTAA 58.010 36.000 21.68 0.00 0.00 2.24
295 299 6.433404 AGACTTTCACTCGAGACCAAATACTA 59.567 38.462 21.68 0.00 0.00 1.82
431 1251 6.989659 TGAAGATAAAGGTCGAACAACTACT 58.010 36.000 1.87 0.00 0.00 2.57
481 1301 0.799534 GTCGTCGGATGTAACCACCG 60.800 60.000 0.00 0.00 46.71 4.94
494 1314 1.267235 GCTCAAGCATCATTGTCGTCG 60.267 52.381 0.00 0.00 41.59 5.12
538 1358 9.084533 AGACAACTAGAAAGATTCTTCACTAGT 57.915 33.333 24.56 24.56 41.07 2.57
539 1359 9.567848 GAGACAACTAGAAAGATTCTTCACTAG 57.432 37.037 23.76 23.76 41.14 2.57
541 1361 8.087750 CAGAGACAACTAGAAAGATTCTTCACT 58.912 37.037 0.00 5.53 41.14 3.41
542 1362 7.870445 ACAGAGACAACTAGAAAGATTCTTCAC 59.130 37.037 0.00 0.00 41.14 3.18
557 1377 6.205464 CACCATTTGACATTACAGAGACAACT 59.795 38.462 0.00 0.00 0.00 3.16
636 1456 0.881796 GCTTGACGAAAGAAAGGGGG 59.118 55.000 6.77 0.00 38.24 5.40
637 1457 1.897560 AGCTTGACGAAAGAAAGGGG 58.102 50.000 6.77 0.00 38.24 4.79
638 1458 3.926616 TCTAGCTTGACGAAAGAAAGGG 58.073 45.455 0.00 0.00 38.24 3.95
639 1459 4.561105 ACTCTAGCTTGACGAAAGAAAGG 58.439 43.478 0.00 0.00 38.24 3.11
640 1460 6.532365 AAACTCTAGCTTGACGAAAGAAAG 57.468 37.500 0.00 3.61 38.24 2.62
641 1461 6.537301 TCAAAACTCTAGCTTGACGAAAGAAA 59.463 34.615 0.00 0.00 38.24 2.52
642 1462 6.046593 TCAAAACTCTAGCTTGACGAAAGAA 58.953 36.000 0.00 0.00 38.24 2.52
643 1463 5.597806 TCAAAACTCTAGCTTGACGAAAGA 58.402 37.500 0.00 0.00 38.24 2.52
644 1464 5.907197 TCAAAACTCTAGCTTGACGAAAG 57.093 39.130 0.00 0.00 39.07 2.62
645 1465 6.223852 AGATCAAAACTCTAGCTTGACGAAA 58.776 36.000 0.00 0.00 32.19 3.46
646 1466 5.784177 AGATCAAAACTCTAGCTTGACGAA 58.216 37.500 0.00 0.00 32.19 3.85
647 1467 5.392767 AGATCAAAACTCTAGCTTGACGA 57.607 39.130 0.00 0.00 32.19 4.20
648 1468 5.406780 ACAAGATCAAAACTCTAGCTTGACG 59.593 40.000 0.00 0.00 36.18 4.35
649 1469 6.793492 ACAAGATCAAAACTCTAGCTTGAC 57.207 37.500 0.00 0.00 36.18 3.18
683 1707 5.583061 ACATAAAATATCACGCCGACAAAGA 59.417 36.000 0.00 0.00 0.00 2.52
691 1715 5.689383 ATGTCCACATAAAATATCACGCC 57.311 39.130 0.00 0.00 34.26 5.68
725 1749 6.183361 CCAACATCAATGTAGACATACCCCTA 60.183 42.308 0.00 0.00 40.80 3.53
736 1979 4.518590 TGGACACAACCAACATCAATGTAG 59.481 41.667 0.00 0.00 40.80 2.74
739 1982 4.487948 GATGGACACAACCAACATCAATG 58.512 43.478 0.00 0.00 43.47 2.82
771 2014 3.674997 AGCACACGTCCAAACTTCATAT 58.325 40.909 0.00 0.00 0.00 1.78
775 2018 1.295792 TGAGCACACGTCCAAACTTC 58.704 50.000 0.00 0.00 0.00 3.01
785 2028 9.958285 GTGATATACAAATATAATGAGCACACG 57.042 33.333 0.00 0.00 0.00 4.49
872 2115 0.884704 GCACCACAACTGATCCGTGT 60.885 55.000 0.00 0.00 0.00 4.49
905 2472 2.418746 CCTGGTCCATGTTTAGTCTCGG 60.419 54.545 0.00 0.00 0.00 4.63
1017 2588 2.584418 CAGCTCGCCATGGACTCG 60.584 66.667 18.40 10.19 0.00 4.18
1037 2608 0.107459 GCATGAAGGAGGAGGTGGAC 60.107 60.000 0.00 0.00 0.00 4.02
1038 2609 0.252881 AGCATGAAGGAGGAGGTGGA 60.253 55.000 0.00 0.00 0.00 4.02
1039 2610 0.179936 GAGCATGAAGGAGGAGGTGG 59.820 60.000 0.00 0.00 0.00 4.61
1040 2611 0.179936 GGAGCATGAAGGAGGAGGTG 59.820 60.000 0.00 0.00 0.00 4.00
1041 2612 0.985490 GGGAGCATGAAGGAGGAGGT 60.985 60.000 0.00 0.00 0.00 3.85
1042 2613 0.693767 AGGGAGCATGAAGGAGGAGG 60.694 60.000 0.00 0.00 0.00 4.30
1043 2614 0.758123 GAGGGAGCATGAAGGAGGAG 59.242 60.000 0.00 0.00 0.00 3.69
1068 2642 2.551270 GCGACGACAAGCAAGTGG 59.449 61.111 0.00 0.00 0.00 4.00
1233 2808 4.410448 GAGGAAACTAAGAAGACGTACGG 58.590 47.826 21.06 1.00 44.43 4.02
1248 2823 1.657804 TTCAGGAGGAGGGAGGAAAC 58.342 55.000 0.00 0.00 0.00 2.78
1295 2873 7.275183 ACATCTAGCAAACATAAGCATGACTA 58.725 34.615 0.00 0.00 35.96 2.59
1300 2878 5.688807 AGGACATCTAGCAAACATAAGCAT 58.311 37.500 0.00 0.00 0.00 3.79
1317 2895 7.148641 CACTGCTCTTTTCGTATATAGGACAT 58.851 38.462 4.64 0.00 0.00 3.06
1318 2896 6.504398 CACTGCTCTTTTCGTATATAGGACA 58.496 40.000 4.64 0.00 0.00 4.02
1319 2897 5.402867 GCACTGCTCTTTTCGTATATAGGAC 59.597 44.000 4.64 0.00 0.00 3.85
1321 2899 4.383052 CGCACTGCTCTTTTCGTATATAGG 59.617 45.833 0.00 0.00 0.00 2.57
1323 2901 3.734231 GCGCACTGCTCTTTTCGTATATA 59.266 43.478 0.30 0.00 41.73 0.86
1324 2902 2.540101 GCGCACTGCTCTTTTCGTATAT 59.460 45.455 0.30 0.00 41.73 0.86
1326 2904 0.721718 GCGCACTGCTCTTTTCGTAT 59.278 50.000 0.30 0.00 41.73 3.06
1328 2906 2.939022 GCGCACTGCTCTTTTCGT 59.061 55.556 0.30 0.00 41.73 3.85
1329 2907 2.202096 CGCGCACTGCTCTTTTCG 60.202 61.111 8.75 0.00 43.27 3.46
1330 2908 2.449556 AAGCGCGCACTGCTCTTTTC 62.450 55.000 35.10 0.00 46.07 2.29
1331 2909 2.546494 AAGCGCGCACTGCTCTTTT 61.546 52.632 35.10 12.59 46.07 2.27
1332 2910 2.974698 AAGCGCGCACTGCTCTTT 60.975 55.556 35.10 13.41 46.07 2.52
1338 2916 4.000557 ACAACGAAGCGCGCACTG 62.001 61.111 35.10 23.34 46.04 3.66
1339 2917 4.000557 CACAACGAAGCGCGCACT 62.001 61.111 35.10 20.55 46.04 4.40
1358 2943 2.657143 ACCCAACCGAAAAAGCAAGTA 58.343 42.857 0.00 0.00 0.00 2.24
1359 2944 1.480789 ACCCAACCGAAAAAGCAAGT 58.519 45.000 0.00 0.00 0.00 3.16
1363 2948 4.514781 AAATCTACCCAACCGAAAAAGC 57.485 40.909 0.00 0.00 0.00 3.51
1364 2949 9.483916 AAAATAAAATCTACCCAACCGAAAAAG 57.516 29.630 0.00 0.00 0.00 2.27
1370 2956 9.296400 CATGTAAAAATAAAATCTACCCAACCG 57.704 33.333 0.00 0.00 0.00 4.44
1413 3517 6.529125 CCAATCAGCATGTAAGTGATTTTCAC 59.471 38.462 10.27 0.00 42.03 3.18
1414 3518 6.209192 ACCAATCAGCATGTAAGTGATTTTCA 59.791 34.615 10.27 0.00 38.56 2.69
1415 3519 6.624423 ACCAATCAGCATGTAAGTGATTTTC 58.376 36.000 10.27 0.00 38.56 2.29
1421 3525 4.487948 CCAAACCAATCAGCATGTAAGTG 58.512 43.478 0.00 0.00 37.40 3.16
1428 3532 0.244450 CACGCCAAACCAATCAGCAT 59.756 50.000 0.00 0.00 0.00 3.79
1433 3537 0.240945 CTCCACACGCCAAACCAATC 59.759 55.000 0.00 0.00 0.00 2.67
1434 3538 1.178534 CCTCCACACGCCAAACCAAT 61.179 55.000 0.00 0.00 0.00 3.16
1475 3579 4.437682 AAAGACTCATCCAAAGACCACA 57.562 40.909 0.00 0.00 0.00 4.17
1476 3580 5.066593 AGAAAAGACTCATCCAAAGACCAC 58.933 41.667 0.00 0.00 0.00 4.16
1484 3589 2.632996 ACGGTGAGAAAAGACTCATCCA 59.367 45.455 0.00 0.00 46.36 3.41
1485 3590 2.996621 CACGGTGAGAAAAGACTCATCC 59.003 50.000 0.74 0.00 46.36 3.51
1498 3603 0.946221 GCTTCCAGTCACACGGTGAG 60.946 60.000 16.29 7.25 43.57 3.51
1500 3605 0.603707 ATGCTTCCAGTCACACGGTG 60.604 55.000 6.58 6.58 34.45 4.94
1501 3606 0.320771 GATGCTTCCAGTCACACGGT 60.321 55.000 0.00 0.00 0.00 4.83
1502 3607 0.036952 AGATGCTTCCAGTCACACGG 60.037 55.000 0.00 0.00 0.00 4.94
1503 3608 1.728971 GAAGATGCTTCCAGTCACACG 59.271 52.381 0.00 0.00 0.00 4.49
1504 3609 3.051081 AGAAGATGCTTCCAGTCACAC 57.949 47.619 3.71 0.00 0.00 3.82
1505 3610 3.777106 AAGAAGATGCTTCCAGTCACA 57.223 42.857 3.71 0.00 0.00 3.58
1507 3612 6.545666 TGTTTAAAAGAAGATGCTTCCAGTCA 59.454 34.615 3.71 0.00 0.00 3.41
1508 3613 6.858478 GTGTTTAAAAGAAGATGCTTCCAGTC 59.142 38.462 3.71 0.00 0.00 3.51
1509 3614 6.513393 CGTGTTTAAAAGAAGATGCTTCCAGT 60.513 38.462 3.71 0.00 0.00 4.00
1510 3615 5.853282 CGTGTTTAAAAGAAGATGCTTCCAG 59.147 40.000 3.71 0.00 0.00 3.86
1511 3616 5.529430 TCGTGTTTAAAAGAAGATGCTTCCA 59.471 36.000 3.71 0.00 0.00 3.53
1513 3618 8.227791 TGTATCGTGTTTAAAAGAAGATGCTTC 58.772 33.333 10.99 0.00 30.03 3.86
1514 3619 8.094798 TGTATCGTGTTTAAAAGAAGATGCTT 57.905 30.769 10.99 0.00 30.03 3.91
1515 3620 7.667043 TGTATCGTGTTTAAAAGAAGATGCT 57.333 32.000 10.99 0.00 30.03 3.79
1516 3621 8.895932 ATTGTATCGTGTTTAAAAGAAGATGC 57.104 30.769 0.00 0.00 0.00 3.91
1519 3624 9.047371 TGTGATTGTATCGTGTTTAAAAGAAGA 57.953 29.630 0.00 0.00 0.00 2.87
1520 3625 9.658475 TTGTGATTGTATCGTGTTTAAAAGAAG 57.342 29.630 0.00 0.00 0.00 2.85
1521 3626 9.658475 CTTGTGATTGTATCGTGTTTAAAAGAA 57.342 29.630 0.00 0.00 0.00 2.52
1522 3627 8.832521 ACTTGTGATTGTATCGTGTTTAAAAGA 58.167 29.630 0.00 0.00 0.00 2.52
1524 3629 9.866936 GTACTTGTGATTGTATCGTGTTTAAAA 57.133 29.630 0.00 0.00 0.00 1.52
1525 3630 9.263538 AGTACTTGTGATTGTATCGTGTTTAAA 57.736 29.630 0.00 0.00 0.00 1.52
1526 3631 8.821147 AGTACTTGTGATTGTATCGTGTTTAA 57.179 30.769 0.00 0.00 0.00 1.52
1527 3632 8.083462 TGAGTACTTGTGATTGTATCGTGTTTA 58.917 33.333 0.00 0.00 0.00 2.01
1528 3633 6.926826 TGAGTACTTGTGATTGTATCGTGTTT 59.073 34.615 0.00 0.00 0.00 2.83
1534 3639 8.926715 TGTATGTGAGTACTTGTGATTGTATC 57.073 34.615 0.00 0.00 0.00 2.24
1562 3667 0.834612 TGCGTTTATAGGAGGGGGTG 59.165 55.000 0.00 0.00 0.00 4.61
1563 3668 0.835276 GTGCGTTTATAGGAGGGGGT 59.165 55.000 0.00 0.00 0.00 4.95
1564 3669 0.249741 CGTGCGTTTATAGGAGGGGG 60.250 60.000 0.00 0.00 0.00 5.40
1567 3672 0.928229 GTGCGTGCGTTTATAGGAGG 59.072 55.000 0.00 0.00 0.00 4.30
1599 3712 9.547753 GCTCAATATCTTGAAGGTGTTAATAGA 57.452 33.333 0.00 0.00 40.78 1.98
1604 3717 6.061022 TGGCTCAATATCTTGAAGGTGTTA 57.939 37.500 0.00 0.00 40.78 2.41
1606 3719 4.521146 CTGGCTCAATATCTTGAAGGTGT 58.479 43.478 0.00 0.00 40.78 4.16
1612 3725 5.012239 AGTTTTGCTGGCTCAATATCTTGA 58.988 37.500 0.00 0.00 39.07 3.02
1613 3726 5.320549 AGTTTTGCTGGCTCAATATCTTG 57.679 39.130 0.00 0.00 0.00 3.02
1614 3727 5.990120 AAGTTTTGCTGGCTCAATATCTT 57.010 34.783 0.00 0.00 0.00 2.40
1619 3732 5.477984 TCTCAATAAGTTTTGCTGGCTCAAT 59.522 36.000 0.00 0.00 0.00 2.57
1625 3738 5.796935 CGTCAATCTCAATAAGTTTTGCTGG 59.203 40.000 0.00 0.00 0.00 4.85
1627 3740 6.801539 TCGTCAATCTCAATAAGTTTTGCT 57.198 33.333 0.00 0.00 0.00 3.91
1631 3744 9.994432 GATGATTTCGTCAATCTCAATAAGTTT 57.006 29.630 10.22 0.00 41.91 2.66
1637 3750 6.820152 TCTGTGATGATTTCGTCAATCTCAAT 59.180 34.615 4.11 0.00 42.83 2.57
1645 3758 1.992667 GCGTCTGTGATGATTTCGTCA 59.007 47.619 0.00 0.00 42.06 4.35
1649 3762 2.604914 ACGATGCGTCTGTGATGATTTC 59.395 45.455 4.05 0.00 33.69 2.17
1652 3765 2.359214 ACTACGATGCGTCTGTGATGAT 59.641 45.455 4.05 0.00 41.54 2.45
1658 3771 2.463592 TCGACTACGATGCGTCTGT 58.536 52.632 4.05 6.51 43.81 3.41
1679 3792 2.370849 TGTTTAGTGAAGGGGACACTCC 59.629 50.000 0.00 0.00 45.58 3.85
1680 3793 3.764237 TGTTTAGTGAAGGGGACACTC 57.236 47.619 0.00 0.00 45.58 3.51
1682 3795 3.949113 TGTTTGTTTAGTGAAGGGGACAC 59.051 43.478 0.00 0.00 38.38 3.67
1687 3800 5.106157 CCTGCTATGTTTGTTTAGTGAAGGG 60.106 44.000 0.00 0.00 0.00 3.95
1691 3804 6.293955 GCTTTCCTGCTATGTTTGTTTAGTGA 60.294 38.462 0.00 0.00 0.00 3.41
1696 3809 3.897505 AGGCTTTCCTGCTATGTTTGTTT 59.102 39.130 0.00 0.00 42.34 2.83
1700 3813 6.857437 ATTTTAGGCTTTCCTGCTATGTTT 57.143 33.333 0.00 0.00 44.08 2.83
1736 3849 6.042638 ACACTTGACACTAGTGCTCATATT 57.957 37.500 22.90 0.74 45.38 1.28
1737 3850 5.667539 ACACTTGACACTAGTGCTCATAT 57.332 39.130 22.90 12.50 45.38 1.78
1738 3851 5.125578 CCTACACTTGACACTAGTGCTCATA 59.874 44.000 22.90 12.39 45.38 2.15
1739 3852 4.081972 CCTACACTTGACACTAGTGCTCAT 60.082 45.833 22.90 11.98 45.38 2.90
1743 3856 3.256136 AGTCCTACACTTGACACTAGTGC 59.744 47.826 22.90 15.35 45.38 4.40
1756 3869 3.139077 CACCAAGGTTCAAGTCCTACAC 58.861 50.000 0.00 0.00 34.56 2.90
1758 3871 2.552373 CCCACCAAGGTTCAAGTCCTAC 60.552 54.545 0.00 0.00 34.56 3.18
1767 3880 1.152546 AACCAGCCCACCAAGGTTC 60.153 57.895 0.00 0.00 40.12 3.62
1785 3898 2.187958 CACTCCCATGACTTAGGTGGA 58.812 52.381 0.00 0.00 34.94 4.02
1787 3900 1.740380 CGCACTCCCATGACTTAGGTG 60.740 57.143 0.00 0.00 0.00 4.00
1788 3901 0.537188 CGCACTCCCATGACTTAGGT 59.463 55.000 0.00 0.00 0.00 3.08
1790 3903 0.811616 GCCGCACTCCCATGACTTAG 60.812 60.000 0.00 0.00 0.00 2.18
1791 3904 1.220749 GCCGCACTCCCATGACTTA 59.779 57.895 0.00 0.00 0.00 2.24
1801 3922 2.501128 TGCCATCTAGCCGCACTC 59.499 61.111 0.00 0.00 0.00 3.51
1806 3927 1.819632 GGTTGGTGCCATCTAGCCG 60.820 63.158 0.00 0.00 0.00 5.52
1809 3930 3.287867 AGATTGGTTGGTGCCATCTAG 57.712 47.619 0.00 0.00 38.48 2.43
1811 3932 2.564062 CAAAGATTGGTTGGTGCCATCT 59.436 45.455 0.00 0.00 38.48 2.90
1839 3960 4.589908 ACGTAGAAAATCTGCCCAGAAAT 58.410 39.130 1.62 0.00 41.36 2.17
1840 3961 4.000988 GACGTAGAAAATCTGCCCAGAAA 58.999 43.478 1.62 0.00 41.36 2.52
1938 4061 8.406297 TCTACTAACACGTCGATAGTAAGTCTA 58.594 37.037 0.00 0.00 33.15 2.59
1964 4087 8.568617 AGTGTCTAGAATTAATTCCCTGGTAT 57.431 34.615 21.86 6.80 37.51 2.73
2016 4139 7.582719 TGGTGCCTCTATTATTCATAAAAGGT 58.417 34.615 0.00 0.00 0.00 3.50
2017 4140 8.463930 TTGGTGCCTCTATTATTCATAAAAGG 57.536 34.615 0.00 0.00 0.00 3.11
2019 4142 9.866655 AGATTGGTGCCTCTATTATTCATAAAA 57.133 29.630 0.00 0.00 0.00 1.52
2021 4144 9.288576 CAAGATTGGTGCCTCTATTATTCATAA 57.711 33.333 0.00 0.00 0.00 1.90
2022 4145 8.439971 ACAAGATTGGTGCCTCTATTATTCATA 58.560 33.333 0.00 0.00 0.00 2.15
2023 4146 7.293073 ACAAGATTGGTGCCTCTATTATTCAT 58.707 34.615 0.00 0.00 0.00 2.57
2024 4147 6.662755 ACAAGATTGGTGCCTCTATTATTCA 58.337 36.000 0.00 0.00 0.00 2.57
2025 4148 8.854614 ATACAAGATTGGTGCCTCTATTATTC 57.145 34.615 0.00 0.00 0.00 1.75
2026 4149 9.071276 CAATACAAGATTGGTGCCTCTATTATT 57.929 33.333 0.00 0.00 0.00 1.40
2027 4150 7.175641 GCAATACAAGATTGGTGCCTCTATTAT 59.824 37.037 0.00 0.00 32.13 1.28
2028 4151 6.486657 GCAATACAAGATTGGTGCCTCTATTA 59.513 38.462 0.00 0.00 32.13 0.98
2029 4152 5.300286 GCAATACAAGATTGGTGCCTCTATT 59.700 40.000 0.00 0.00 32.13 1.73
2030 4153 4.823989 GCAATACAAGATTGGTGCCTCTAT 59.176 41.667 0.00 0.00 32.13 1.98
2032 4155 3.019564 GCAATACAAGATTGGTGCCTCT 58.980 45.455 0.00 0.00 32.13 3.69
2033 4156 2.099756 GGCAATACAAGATTGGTGCCTC 59.900 50.000 20.86 5.09 44.47 4.70
2034 4157 2.102578 GGCAATACAAGATTGGTGCCT 58.897 47.619 20.86 0.00 44.47 4.75
2035 4158 1.824230 TGGCAATACAAGATTGGTGCC 59.176 47.619 21.13 21.13 46.30 5.01
2037 4160 5.895636 TTACTGGCAATACAAGATTGGTG 57.104 39.130 0.00 0.00 0.00 4.17
2038 4161 7.346471 AGTATTACTGGCAATACAAGATTGGT 58.654 34.615 9.74 0.00 41.74 3.67
2039 4162 7.807977 AGTATTACTGGCAATACAAGATTGG 57.192 36.000 9.74 0.00 41.74 3.16
2040 4163 9.325198 TGTAGTATTACTGGCAATACAAGATTG 57.675 33.333 6.60 0.00 41.74 2.67
2041 4164 9.547753 CTGTAGTATTACTGGCAATACAAGATT 57.452 33.333 6.60 0.00 41.74 2.40
2042 4165 8.705594 ACTGTAGTATTACTGGCAATACAAGAT 58.294 33.333 6.60 0.00 41.74 2.40
2044 4167 8.718102 AACTGTAGTATTACTGGCAATACAAG 57.282 34.615 6.60 6.95 41.74 3.16
2046 4169 8.315482 TCAAACTGTAGTATTACTGGCAATACA 58.685 33.333 6.60 1.29 41.74 2.29
2047 4170 8.712285 TCAAACTGTAGTATTACTGGCAATAC 57.288 34.615 6.60 0.50 40.29 1.89
2048 4171 9.727859 TTTCAAACTGTAGTATTACTGGCAATA 57.272 29.630 6.60 0.00 34.18 1.90
2049 4172 8.512138 GTTTCAAACTGTAGTATTACTGGCAAT 58.488 33.333 6.60 0.00 34.18 3.56
2088 4216 8.308207 TGTGGTTTTAAAATTTAGGCCTCATAC 58.692 33.333 9.68 0.00 0.00 2.39
2096 4224 9.203421 GGAGAACATGTGGTTTTAAAATTTAGG 57.797 33.333 0.00 0.00 40.63 2.69
2171 4299 9.767684 GATCGACACAAAAATACATAATGTGAA 57.232 29.630 10.80 0.00 43.01 3.18
2172 4300 9.161629 AGATCGACACAAAAATACATAATGTGA 57.838 29.630 10.80 0.00 43.01 3.58
2220 4348 9.499479 CAGCTATCCATGTATAAAAAGATCAGT 57.501 33.333 0.00 0.00 0.00 3.41
2320 4448 6.884472 TCAGATATTGGTTTCTCCCTGTTA 57.116 37.500 0.00 0.00 34.77 2.41
2390 4518 3.198068 CAATCGATTTGGACTGACGGAT 58.802 45.455 8.21 0.00 0.00 4.18
2959 5087 0.378257 CATACACATCGCAGTTGGCC 59.622 55.000 0.00 0.00 40.31 5.36
3085 5213 1.377725 CCTACAGCCTGCAGTTGGG 60.378 63.158 13.81 0.00 0.00 4.12
3097 5225 3.686726 GCAACTGGACATTTCTCCTACAG 59.313 47.826 0.00 0.00 0.00 2.74
3200 5328 5.116882 GCTGGTACCCTCAATACTAGTTTG 58.883 45.833 10.07 6.10 34.53 2.93
3202 5330 4.359105 TGCTGGTACCCTCAATACTAGTT 58.641 43.478 10.07 0.00 34.53 2.24
3238 5366 2.035066 ACAATTGTTCAGGCAAGCTGAC 59.965 45.455 4.92 0.00 0.00 3.51
3367 5495 0.901124 CTGGTAACTCAGAGGCTGCT 59.099 55.000 1.53 0.00 36.93 4.24
3415 5543 1.227823 TCCACCAACGGCAACTCTG 60.228 57.895 0.00 0.00 0.00 3.35
3416 5544 1.071471 CTCCACCAACGGCAACTCT 59.929 57.895 0.00 0.00 0.00 3.24
3629 5757 4.481368 TCTTCACCGCCATTATAGTTGT 57.519 40.909 0.00 0.00 0.00 3.32
3667 5795 1.474077 CGAAATTGCTTCTCCCCTTGG 59.526 52.381 0.00 0.00 31.20 3.61
3754 5882 1.491563 CAACCGCTTCGTTCCTTCG 59.508 57.895 0.00 0.00 0.00 3.79
3828 5956 1.512156 CCAACTTAAAGGCGCACGGT 61.512 55.000 10.83 0.00 0.00 4.83
3830 5958 0.165944 CTCCAACTTAAAGGCGCACG 59.834 55.000 10.83 0.00 0.00 5.34
3966 6094 2.852449 TCTGCCACCTTTGGGATTAGAT 59.148 45.455 0.00 0.00 43.43 1.98
3967 6095 2.026262 GTCTGCCACCTTTGGGATTAGA 60.026 50.000 0.00 0.00 43.43 2.10
3973 6101 0.675633 CAAAGTCTGCCACCTTTGGG 59.324 55.000 9.86 0.00 44.15 4.12
4120 6248 9.552114 GATATAATCTCAAAAAGCATCATTCCG 57.448 33.333 0.00 0.00 0.00 4.30
4263 6391 1.771255 GCTCCCTTAGGTCCACATCAT 59.229 52.381 0.00 0.00 0.00 2.45
4477 6605 3.119101 TCGGCAAGTCCTGATCTAGTTTC 60.119 47.826 0.00 0.00 0.00 2.78
4478 6606 2.832129 TCGGCAAGTCCTGATCTAGTTT 59.168 45.455 0.00 0.00 0.00 2.66
4494 6624 2.346766 AGCCATATTTCACATCGGCA 57.653 45.000 0.00 0.00 42.10 5.69
4495 6625 4.093998 CAGATAGCCATATTTCACATCGGC 59.906 45.833 0.00 0.00 39.90 5.54
4564 6694 1.292061 ACGCACTACTCACGCAAAAA 58.708 45.000 0.00 0.00 0.00 1.94
4565 6695 2.137129 TACGCACTACTCACGCAAAA 57.863 45.000 0.00 0.00 0.00 2.44
4566 6696 2.357327 ATACGCACTACTCACGCAAA 57.643 45.000 0.00 0.00 0.00 3.68
4567 6697 1.989864 CAATACGCACTACTCACGCAA 59.010 47.619 0.00 0.00 0.00 4.85
4568 6698 1.068125 ACAATACGCACTACTCACGCA 60.068 47.619 0.00 0.00 0.00 5.24
4569 6699 1.625616 ACAATACGCACTACTCACGC 58.374 50.000 0.00 0.00 0.00 5.34
4570 6700 2.344441 CCAACAATACGCACTACTCACG 59.656 50.000 0.00 0.00 0.00 4.35
4571 6701 2.093783 GCCAACAATACGCACTACTCAC 59.906 50.000 0.00 0.00 0.00 3.51
4572 6702 2.289133 TGCCAACAATACGCACTACTCA 60.289 45.455 0.00 0.00 0.00 3.41
4573 6703 2.343101 TGCCAACAATACGCACTACTC 58.657 47.619 0.00 0.00 0.00 2.59
4574 6704 2.465860 TGCCAACAATACGCACTACT 57.534 45.000 0.00 0.00 0.00 2.57
4575 6705 4.868450 TTATGCCAACAATACGCACTAC 57.132 40.909 0.00 0.00 34.87 2.73
4576 6706 6.285224 AGTATTATGCCAACAATACGCACTA 58.715 36.000 6.82 0.00 40.80 2.74
4577 6707 5.123227 AGTATTATGCCAACAATACGCACT 58.877 37.500 6.82 0.00 40.80 4.40
4578 6708 5.418310 AGTATTATGCCAACAATACGCAC 57.582 39.130 6.82 0.00 40.80 5.34
4579 6709 7.737972 ATAAGTATTATGCCAACAATACGCA 57.262 32.000 6.82 0.00 40.39 5.24
4596 6726 4.502604 GCCGATACACCACCACATAAGTAT 60.503 45.833 0.00 0.00 0.00 2.12
4607 6737 4.690122 ACTATTACAAGCCGATACACCAC 58.310 43.478 0.00 0.00 0.00 4.16
4638 6768 7.986889 ACTTGGAACAGATTTATTGCAAAACTT 59.013 29.630 1.71 0.00 42.39 2.66
4639 6769 7.500141 ACTTGGAACAGATTTATTGCAAAACT 58.500 30.769 1.71 0.00 42.39 2.66
4733 6864 4.569966 GCCGATAGCTCTTCATATGATTGG 59.430 45.833 6.17 4.32 38.99 3.16
4784 6915 3.350833 CTGTAGGGCTGCTTTCAGAAAT 58.649 45.455 0.00 0.00 42.95 2.17
4828 6960 1.808945 CAAGCCAGTAAGCTGTTGGAG 59.191 52.381 13.87 1.63 44.11 3.86
4917 7049 4.256920 AGGGAAATCATCAACTCTGTTCG 58.743 43.478 0.00 0.00 0.00 3.95
4925 7057 2.354821 GCACGGTAGGGAAATCATCAAC 59.645 50.000 0.00 0.00 0.00 3.18
4931 7063 1.471287 GTTTGGCACGGTAGGGAAATC 59.529 52.381 0.00 0.00 0.00 2.17
4936 7068 0.035439 ATCAGTTTGGCACGGTAGGG 60.035 55.000 0.00 0.00 0.00 3.53
4954 7086 1.490574 AGCTTTCGGCCTGTCTAGAT 58.509 50.000 0.00 0.00 43.05 1.98
4977 7141 2.732658 GTGGTTCGTGGACTCGGT 59.267 61.111 0.00 0.00 0.00 4.69
5011 7175 2.775856 GCGCTCGAGGATGAGGACA 61.776 63.158 15.58 0.00 36.47 4.02
5073 7237 0.969894 CCTCTCGAACTGTTCCTGGT 59.030 55.000 14.48 0.00 0.00 4.00
5284 7518 3.653539 TCTGAAGCAGTAAACGCACTA 57.346 42.857 0.00 0.00 32.61 2.74
5297 7531 3.498397 TGACAAGTCCGATTTTCTGAAGC 59.502 43.478 0.00 0.00 0.00 3.86
5312 7546 0.916086 TGGAACCACACCTGACAAGT 59.084 50.000 0.00 0.00 0.00 3.16
5462 7696 8.640091 TGATTCATCTGAATTTTCTCTACGAG 57.360 34.615 6.85 0.00 44.14 4.18
5545 7788 0.816018 ACGGTGGACATGTTTTCGCA 60.816 50.000 0.00 0.00 0.00 5.10
5616 7859 6.465948 TGTGCAATTGGAAAATAAATGCTCT 58.534 32.000 7.72 0.00 0.00 4.09
5623 7866 5.046448 AGAGGCATGTGCAATTGGAAAATAA 60.046 36.000 7.72 0.00 44.36 1.40
5626 7869 2.633967 AGAGGCATGTGCAATTGGAAAA 59.366 40.909 7.72 0.00 44.36 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.