Multiple sequence alignment - TraesCS1B01G379100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G379100 chr1B 100.000 2339 0 0 1 2339 611789587 611791925 0.000000e+00 4320.0
1 TraesCS1B01G379100 chr1B 80.342 702 104 22 1366 2050 161633963 161633279 3.470000e-138 501.0
2 TraesCS1B01G379100 chr1B 95.172 145 7 0 2180 2324 611819884 611820028 1.810000e-56 230.0
3 TraesCS1B01G379100 chr1B 93.007 143 8 1 2040 2180 39564079 39564221 8.470000e-50 207.0
4 TraesCS1B01G379100 chr6B 96.272 1368 42 4 1 1366 151678480 151679840 0.000000e+00 2235.0
5 TraesCS1B01G379100 chr6B 95.468 1368 47 3 1 1366 222675584 222676938 0.000000e+00 2169.0
6 TraesCS1B01G379100 chr6B 97.674 129 3 0 2052 2180 203531739 203531611 3.030000e-54 222.0
7 TraesCS1B01G379100 chr2B 95.451 1363 61 1 1 1362 30701340 30702702 0.000000e+00 2172.0
8 TraesCS1B01G379100 chr2B 84.972 539 69 11 1391 1924 389589167 389588636 9.510000e-149 536.0
9 TraesCS1B01G379100 chr2B 78.932 674 110 18 1391 2049 90668863 90669519 1.660000e-116 429.0
10 TraesCS1B01G379100 chr2B 95.489 133 6 0 2048 2180 74364679 74364547 1.820000e-51 213.0
11 TraesCS1B01G379100 chr6A 95.088 1364 64 2 1 1362 371337481 371338843 0.000000e+00 2145.0
12 TraesCS1B01G379100 chr3B 94.326 1357 73 4 3 1359 418735711 418734359 0.000000e+00 2076.0
13 TraesCS1B01G379100 chr3B 83.673 686 81 11 1391 2049 477145934 477146615 3.300000e-173 617.0
14 TraesCS1B01G379100 chr3B 92.169 166 13 0 2174 2339 783892563 783892728 3.890000e-58 235.0
15 TraesCS1B01G379100 chr3B 93.007 143 8 2 2038 2180 155175890 155175750 8.470000e-50 207.0
16 TraesCS1B01G379100 chr3B 90.132 152 14 1 2029 2180 444354040 444353890 1.830000e-46 196.0
17 TraesCS1B01G379100 chr2A 93.993 1365 79 3 1 1365 433378083 433376722 0.000000e+00 2063.0
18 TraesCS1B01G379100 chr2D 93.773 1365 81 3 1 1362 273017910 273019273 0.000000e+00 2047.0
19 TraesCS1B01G379100 chr2D 90.183 438 37 4 1364 1796 41954005 41954441 1.210000e-157 566.0
20 TraesCS1B01G379100 chr2D 94.245 139 7 1 2043 2180 137572565 137572703 6.550000e-51 211.0
21 TraesCS1B01G379100 chr7D 93.768 1364 82 2 1 1362 149106979 149105617 0.000000e+00 2045.0
22 TraesCS1B01G379100 chr7D 93.768 1364 81 3 1 1362 232924946 232926307 0.000000e+00 2045.0
23 TraesCS1B01G379100 chr7D 79.607 407 62 12 1642 2046 278660221 278660608 2.960000e-69 272.0
24 TraesCS1B01G379100 chr7D 96.212 132 5 0 2049 2180 81472053 81471922 1.410000e-52 217.0
25 TraesCS1B01G379100 chr7D 96.899 129 4 0 2052 2180 432328085 432327957 1.410000e-52 217.0
26 TraesCS1B01G379100 chr7D 94.245 139 7 1 2043 2180 122934837 122934699 6.550000e-51 211.0
27 TraesCS1B01G379100 chr7D 75.225 222 41 11 1813 2028 232643231 232643018 2.470000e-15 93.5
28 TraesCS1B01G379100 chr1D 90.343 466 37 6 1365 1824 379095382 379094919 2.570000e-169 604.0
29 TraesCS1B01G379100 chr1D 95.556 135 6 0 2046 2180 491826753 491826887 1.410000e-52 217.0
30 TraesCS1B01G379100 chr3D 89.655 464 41 6 1365 1824 514936105 514935645 3.350000e-163 584.0
31 TraesCS1B01G379100 chr3D 96.947 131 4 0 2050 2180 515878665 515878795 1.090000e-53 220.0
32 TraesCS1B01G379100 chr4D 89.348 460 47 2 1365 1824 479238477 479238934 5.600000e-161 577.0
33 TraesCS1B01G379100 chr4D 83.096 633 91 15 1398 2024 426176644 426176022 1.570000e-156 562.0
34 TraesCS1B01G379100 chr4D 96.212 132 5 0 2049 2180 240326757 240326888 1.410000e-52 217.0
35 TraesCS1B01G379100 chr4D 95.588 136 5 1 2045 2180 327925688 327925554 1.410000e-52 217.0
36 TraesCS1B01G379100 chr5D 82.165 656 106 10 1398 2050 120957518 120958165 9.450000e-154 553.0
37 TraesCS1B01G379100 chr5A 84.035 570 75 13 1365 1924 317487673 317487110 3.420000e-148 534.0
38 TraesCS1B01G379100 chr7A 80.810 667 100 20 1365 2024 661210894 661211539 4.490000e-137 497.0
39 TraesCS1B01G379100 chr5B 94.375 160 9 0 2180 2339 709476067 709476226 1.800000e-61 246.0
40 TraesCS1B01G379100 chr5B 94.304 158 9 0 2182 2339 709430669 709430826 2.320000e-60 243.0
41 TraesCS1B01G379100 chr5B 93.750 160 10 0 2180 2339 581951284 581951125 8.350000e-60 241.0
42 TraesCS1B01G379100 chr4B 93.789 161 10 0 2179 2339 283024597 283024437 2.320000e-60 243.0
43 TraesCS1B01G379100 chr4B 96.212 132 5 0 2049 2180 592254008 592254139 1.410000e-52 217.0
44 TraesCS1B01G379100 chr7B 93.125 160 11 0 2180 2339 77422173 77422014 3.890000e-58 235.0
45 TraesCS1B01G379100 chr7B 92.500 160 12 0 2180 2339 77400587 77400428 1.810000e-56 230.0
46 TraesCS1B01G379100 chr7B 92.073 164 11 2 2177 2339 368815927 368816089 1.810000e-56 230.0
47 TraesCS1B01G379100 chr6D 92.361 144 11 0 2037 2180 382705478 382705621 3.050000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G379100 chr1B 611789587 611791925 2338 False 4320 4320 100.000 1 2339 1 chr1B.!!$F2 2338
1 TraesCS1B01G379100 chr1B 161633279 161633963 684 True 501 501 80.342 1366 2050 1 chr1B.!!$R1 684
2 TraesCS1B01G379100 chr6B 151678480 151679840 1360 False 2235 2235 96.272 1 1366 1 chr6B.!!$F1 1365
3 TraesCS1B01G379100 chr6B 222675584 222676938 1354 False 2169 2169 95.468 1 1366 1 chr6B.!!$F2 1365
4 TraesCS1B01G379100 chr2B 30701340 30702702 1362 False 2172 2172 95.451 1 1362 1 chr2B.!!$F1 1361
5 TraesCS1B01G379100 chr2B 389588636 389589167 531 True 536 536 84.972 1391 1924 1 chr2B.!!$R2 533
6 TraesCS1B01G379100 chr2B 90668863 90669519 656 False 429 429 78.932 1391 2049 1 chr2B.!!$F2 658
7 TraesCS1B01G379100 chr6A 371337481 371338843 1362 False 2145 2145 95.088 1 1362 1 chr6A.!!$F1 1361
8 TraesCS1B01G379100 chr3B 418734359 418735711 1352 True 2076 2076 94.326 3 1359 1 chr3B.!!$R2 1356
9 TraesCS1B01G379100 chr3B 477145934 477146615 681 False 617 617 83.673 1391 2049 1 chr3B.!!$F1 658
10 TraesCS1B01G379100 chr2A 433376722 433378083 1361 True 2063 2063 93.993 1 1365 1 chr2A.!!$R1 1364
11 TraesCS1B01G379100 chr2D 273017910 273019273 1363 False 2047 2047 93.773 1 1362 1 chr2D.!!$F3 1361
12 TraesCS1B01G379100 chr7D 149105617 149106979 1362 True 2045 2045 93.768 1 1362 1 chr7D.!!$R3 1361
13 TraesCS1B01G379100 chr7D 232924946 232926307 1361 False 2045 2045 93.768 1 1362 1 chr7D.!!$F1 1361
14 TraesCS1B01G379100 chr4D 426176022 426176644 622 True 562 562 83.096 1398 2024 1 chr4D.!!$R2 626
15 TraesCS1B01G379100 chr5D 120957518 120958165 647 False 553 553 82.165 1398 2050 1 chr5D.!!$F1 652
16 TraesCS1B01G379100 chr5A 317487110 317487673 563 True 534 534 84.035 1365 1924 1 chr5A.!!$R1 559
17 TraesCS1B01G379100 chr7A 661210894 661211539 645 False 497 497 80.810 1365 2024 1 chr7A.!!$F1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 930 1.342174 TGACTTGTTGGAGGGTACGAC 59.658 52.381 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 2307 0.03101 AATAGAGAGGGCCCGAACCT 60.031 55.0 18.44 14.71 42.18 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 127 3.446161 AGTCGTAGATTTGATTGACCCGA 59.554 43.478 0.00 0.00 40.67 5.14
282 286 3.008330 TCAGTACGGTCTGCTTACTCTC 58.992 50.000 4.59 0.00 35.63 3.20
358 362 3.323979 CGGAGCACACCTAACCCTATATT 59.676 47.826 0.00 0.00 0.00 1.28
601 610 5.417754 TGAGAGAGCTTGTGAGATTGATT 57.582 39.130 0.00 0.00 0.00 2.57
640 649 8.840321 CAACATTGGAATACCTATTACTCCTTG 58.160 37.037 0.00 0.00 37.04 3.61
819 829 6.853279 AATTTTGTAAACGCATCATCTTCG 57.147 33.333 0.00 0.00 0.00 3.79
920 930 1.342174 TGACTTGTTGGAGGGTACGAC 59.658 52.381 0.00 0.00 0.00 4.34
1125 1136 2.276116 GGACGGAGGACAGTCAGCA 61.276 63.158 2.17 0.00 41.61 4.41
1431 1442 1.656587 AGGACTCTGCATGTAACCCA 58.343 50.000 0.00 0.00 0.00 4.51
1432 1443 2.200081 AGGACTCTGCATGTAACCCAT 58.800 47.619 0.00 0.00 0.00 4.00
1506 1533 4.021719 AGCGTTAAGGCTAGACACAACTAA 60.022 41.667 20.54 0.00 42.62 2.24
1510 1537 3.983044 AGGCTAGACACAACTAAAGGG 57.017 47.619 0.00 0.00 0.00 3.95
1520 1547 1.076438 AACTAAAGGGGAGCTGGCTT 58.924 50.000 0.00 0.00 0.00 4.35
1521 1548 1.966845 ACTAAAGGGGAGCTGGCTTA 58.033 50.000 0.00 0.00 0.00 3.09
1538 1565 1.001597 CTTATACGGCGACTCCCTCAC 60.002 57.143 16.62 0.00 0.00 3.51
1587 1614 2.631545 ACATGTAGGGCTATTACCGGAC 59.368 50.000 9.46 0.00 0.00 4.79
1603 1630 3.325201 GACGATGTTTCCCGGGGCT 62.325 63.158 23.50 0.03 0.00 5.19
1662 1690 2.242572 CGCGTCTCTCGTCCCGATA 61.243 63.158 0.00 0.00 42.13 2.92
1672 1700 0.828677 CGTCCCGATAAACCCCTCTT 59.171 55.000 0.00 0.00 0.00 2.85
1679 1707 4.286291 CCCGATAAACCCCTCTTAAGCTAT 59.714 45.833 0.00 0.00 0.00 2.97
1683 1711 6.239345 CGATAAACCCCTCTTAAGCTATCACT 60.239 42.308 0.00 0.00 0.00 3.41
1780 1810 4.175337 GGGGCTAGCGCATGGTGA 62.175 66.667 30.16 0.00 38.10 4.02
1826 1856 0.103208 CAGGGATCGAGAAGTTCCGG 59.897 60.000 0.00 0.00 39.17 5.14
1830 1860 0.806492 GATCGAGAAGTTCCGGCCAC 60.806 60.000 2.24 0.00 0.00 5.01
1834 1864 2.434359 GAAGTTCCGGCCACCTCG 60.434 66.667 2.24 0.00 0.00 4.63
1848 1965 0.386838 ACCTCGTCGAAAAGTTCCGT 59.613 50.000 0.00 0.00 0.00 4.69
1857 1974 2.353323 GAAAAGTTCCGTCCGGCTTAT 58.647 47.619 0.00 0.00 34.68 1.73
1863 1980 0.531657 TCCGTCCGGCTTATCGAAAA 59.468 50.000 0.00 0.00 34.68 2.29
1873 1990 2.477357 GCTTATCGAAAAAGTTCCGGCC 60.477 50.000 0.00 0.00 0.00 6.13
1890 2007 3.946907 CGGCTCGTCGGAAAGTTT 58.053 55.556 0.00 0.00 0.00 2.66
1891 2008 2.231820 CGGCTCGTCGGAAAGTTTT 58.768 52.632 0.00 0.00 0.00 2.43
1892 2009 0.110823 CGGCTCGTCGGAAAGTTTTG 60.111 55.000 0.00 0.00 0.00 2.44
1893 2010 0.237498 GGCTCGTCGGAAAGTTTTGG 59.763 55.000 0.00 0.00 0.00 3.28
1894 2011 0.385598 GCTCGTCGGAAAGTTTTGGC 60.386 55.000 0.00 0.00 0.00 4.52
1895 2012 0.237498 CTCGTCGGAAAGTTTTGGCC 59.763 55.000 0.00 0.00 0.00 5.36
1896 2013 1.082366 CGTCGGAAAGTTTTGGCCG 60.082 57.895 7.69 7.69 44.83 6.13
1897 2014 1.284715 GTCGGAAAGTTTTGGCCGG 59.715 57.895 12.69 0.00 43.71 6.13
1898 2015 2.049526 CGGAAAGTTTTGGCCGGC 60.050 61.111 21.18 21.18 40.08 6.13
1899 2016 2.561037 CGGAAAGTTTTGGCCGGCT 61.561 57.895 28.56 2.49 40.08 5.52
1900 2017 1.289066 GGAAAGTTTTGGCCGGCTC 59.711 57.895 28.56 17.27 0.00 4.70
1901 2018 1.460273 GGAAAGTTTTGGCCGGCTCA 61.460 55.000 28.56 19.91 0.00 4.26
1902 2019 0.603065 GAAAGTTTTGGCCGGCTCAT 59.397 50.000 28.56 6.27 0.00 2.90
1903 2020 0.603065 AAAGTTTTGGCCGGCTCATC 59.397 50.000 28.56 10.32 0.00 2.92
1904 2021 0.539438 AAGTTTTGGCCGGCTCATCA 60.539 50.000 28.56 13.32 0.00 3.07
1933 2076 0.383231 CATCCGGCTCAATGAAAGGC 59.617 55.000 0.00 0.00 36.05 4.35
1961 2104 2.478894 GGCTCGTCGAAAAGTTTCATCA 59.521 45.455 0.00 0.00 37.01 3.07
1979 2141 3.685139 TCAGAATCGCCAAAGAGTTCT 57.315 42.857 0.00 0.00 0.00 3.01
1983 2145 3.007398 AGAATCGCCAAAGAGTTCTGACT 59.993 43.478 0.00 0.00 39.32 3.41
2006 2168 2.611971 CCTCGATGAAAAGTTCCGTCCA 60.612 50.000 0.00 0.00 0.00 4.02
2018 2181 0.250553 TCCGTCCAAATCGGCAAAGT 60.251 50.000 0.00 0.00 46.49 2.66
2027 2190 1.444250 TCGGCAAAGTGTTCCGACT 59.556 52.632 0.00 0.00 46.12 4.18
2081 2244 4.082657 CGGAGGATCTCGGGTAGG 57.917 66.667 0.00 0.00 33.73 3.18
2082 2245 1.604023 CGGAGGATCTCGGGTAGGG 60.604 68.421 0.00 0.00 33.73 3.53
2083 2246 1.228925 GGAGGATCTCGGGTAGGGG 60.229 68.421 0.00 0.00 33.73 4.79
2085 2248 2.019272 AGGATCTCGGGTAGGGGGT 61.019 63.158 0.00 0.00 0.00 4.95
2086 2249 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
2087 2250 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
2097 2260 2.600470 GGGGGTCCCAAACTGTGC 60.600 66.667 10.98 0.00 44.65 4.57
2098 2261 2.983592 GGGGTCCCAAACTGTGCG 60.984 66.667 10.98 0.00 35.81 5.34
2099 2262 2.203294 GGGTCCCAAACTGTGCGT 60.203 61.111 1.78 0.00 0.00 5.24
2100 2263 2.258726 GGGTCCCAAACTGTGCGTC 61.259 63.158 1.78 0.00 0.00 5.19
2101 2264 1.227853 GGTCCCAAACTGTGCGTCT 60.228 57.895 0.00 0.00 0.00 4.18
2102 2265 0.034337 GGTCCCAAACTGTGCGTCTA 59.966 55.000 0.00 0.00 0.00 2.59
2103 2266 1.541670 GGTCCCAAACTGTGCGTCTAA 60.542 52.381 0.00 0.00 0.00 2.10
2104 2267 1.798813 GTCCCAAACTGTGCGTCTAAG 59.201 52.381 0.00 0.00 0.00 2.18
2105 2268 1.156736 CCCAAACTGTGCGTCTAAGG 58.843 55.000 0.00 0.00 0.00 2.69
2106 2269 1.542547 CCCAAACTGTGCGTCTAAGGT 60.543 52.381 0.00 0.00 0.00 3.50
2107 2270 1.798813 CCAAACTGTGCGTCTAAGGTC 59.201 52.381 0.00 0.00 0.00 3.85
2108 2271 1.455786 CAAACTGTGCGTCTAAGGTCG 59.544 52.381 0.00 0.00 0.00 4.79
2109 2272 0.956633 AACTGTGCGTCTAAGGTCGA 59.043 50.000 0.00 0.00 0.00 4.20
2110 2273 1.174783 ACTGTGCGTCTAAGGTCGAT 58.825 50.000 0.00 0.00 0.00 3.59
2111 2274 1.135373 ACTGTGCGTCTAAGGTCGATG 60.135 52.381 0.00 0.00 0.00 3.84
2112 2275 0.172578 TGTGCGTCTAAGGTCGATGG 59.827 55.000 0.00 0.00 0.00 3.51
2113 2276 0.172803 GTGCGTCTAAGGTCGATGGT 59.827 55.000 0.00 0.00 0.00 3.55
2114 2277 1.402968 GTGCGTCTAAGGTCGATGGTA 59.597 52.381 0.00 0.00 0.00 3.25
2115 2278 2.093890 TGCGTCTAAGGTCGATGGTAA 58.906 47.619 0.00 0.00 0.00 2.85
2116 2279 2.159338 TGCGTCTAAGGTCGATGGTAAC 60.159 50.000 0.00 0.00 0.00 2.50
2127 2290 3.006728 TGGTAACAGGAGGCGGGG 61.007 66.667 0.00 0.00 46.17 5.73
2128 2291 3.793888 GGTAACAGGAGGCGGGGG 61.794 72.222 0.00 0.00 0.00 5.40
2129 2292 2.686106 GTAACAGGAGGCGGGGGA 60.686 66.667 0.00 0.00 0.00 4.81
2130 2293 2.686106 TAACAGGAGGCGGGGGAC 60.686 66.667 0.00 0.00 0.00 4.46
2131 2294 3.549433 TAACAGGAGGCGGGGGACA 62.549 63.158 0.00 0.00 0.00 4.02
2136 2299 4.530857 GAGGCGGGGGACACGATG 62.531 72.222 0.00 0.00 0.00 3.84
2138 2301 4.404098 GGCGGGGGACACGATGTT 62.404 66.667 0.00 0.00 0.00 2.71
2139 2302 2.359478 GCGGGGGACACGATGTTT 60.359 61.111 0.00 0.00 0.00 2.83
2140 2303 1.078988 GCGGGGGACACGATGTTTA 60.079 57.895 0.00 0.00 0.00 2.01
2141 2304 1.363885 GCGGGGGACACGATGTTTAC 61.364 60.000 0.00 0.00 0.00 2.01
2142 2305 0.741927 CGGGGGACACGATGTTTACC 60.742 60.000 0.00 0.00 0.00 2.85
2143 2306 0.393402 GGGGGACACGATGTTTACCC 60.393 60.000 13.15 13.15 37.95 3.69
2144 2307 0.325602 GGGGACACGATGTTTACCCA 59.674 55.000 0.00 0.00 38.30 4.51
2145 2308 1.677820 GGGGACACGATGTTTACCCAG 60.678 57.143 0.00 0.00 38.30 4.45
2146 2309 1.677820 GGGACACGATGTTTACCCAGG 60.678 57.143 0.00 0.00 37.50 4.45
2147 2310 1.002773 GGACACGATGTTTACCCAGGT 59.997 52.381 0.00 0.00 0.00 4.00
2148 2311 2.551504 GGACACGATGTTTACCCAGGTT 60.552 50.000 0.00 0.00 0.00 3.50
2149 2312 2.740447 GACACGATGTTTACCCAGGTTC 59.260 50.000 0.00 0.00 0.00 3.62
2150 2313 1.730064 CACGATGTTTACCCAGGTTCG 59.270 52.381 6.36 6.36 31.96 3.95
2151 2314 1.338389 ACGATGTTTACCCAGGTTCGG 60.338 52.381 11.39 0.00 30.52 4.30
2159 2322 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
2160 2323 2.685380 CAGGTTCGGGCCCTCTCT 60.685 66.667 22.43 9.12 0.00 3.10
2161 2324 1.381327 CAGGTTCGGGCCCTCTCTA 60.381 63.158 22.43 0.00 0.00 2.43
2162 2325 0.760945 CAGGTTCGGGCCCTCTCTAT 60.761 60.000 22.43 0.00 0.00 1.98
2163 2326 0.031010 AGGTTCGGGCCCTCTCTATT 60.031 55.000 22.43 0.00 0.00 1.73
2164 2327 0.106894 GGTTCGGGCCCTCTCTATTG 59.893 60.000 22.43 0.54 0.00 1.90
2165 2328 1.120530 GTTCGGGCCCTCTCTATTGA 58.879 55.000 22.43 3.53 0.00 2.57
2166 2329 1.069358 GTTCGGGCCCTCTCTATTGAG 59.931 57.143 22.43 0.00 41.51 3.02
2178 2341 7.706100 CCTCTCTATTGAGGTAATACCCTAC 57.294 44.000 5.71 0.00 46.33 3.18
2179 2342 7.471890 CCTCTCTATTGAGGTAATACCCTACT 58.528 42.308 5.71 0.00 46.33 2.57
2180 2343 7.394923 CCTCTCTATTGAGGTAATACCCTACTG 59.605 44.444 5.71 0.00 46.33 2.74
2181 2344 7.823635 TCTCTATTGAGGTAATACCCTACTGT 58.176 38.462 5.71 0.00 39.75 3.55
2182 2345 8.952602 TCTCTATTGAGGTAATACCCTACTGTA 58.047 37.037 5.71 0.00 39.75 2.74
2183 2346 9.584008 CTCTATTGAGGTAATACCCTACTGTAA 57.416 37.037 5.71 0.00 39.75 2.41
2184 2347 9.584008 TCTATTGAGGTAATACCCTACTGTAAG 57.416 37.037 5.71 0.00 39.75 2.34
2185 2348 9.584008 CTATTGAGGTAATACCCTACTGTAAGA 57.416 37.037 5.71 0.00 39.75 2.10
2186 2349 7.893124 TTGAGGTAATACCCTACTGTAAGAG 57.107 40.000 5.71 0.00 39.75 2.85
2187 2350 5.832060 TGAGGTAATACCCTACTGTAAGAGC 59.168 44.000 5.71 0.00 39.75 4.09
2188 2351 5.774179 AGGTAATACCCTACTGTAAGAGCA 58.226 41.667 5.71 0.00 39.75 4.26
2189 2352 6.382925 AGGTAATACCCTACTGTAAGAGCAT 58.617 40.000 5.71 0.00 39.75 3.79
2190 2353 6.494146 AGGTAATACCCTACTGTAAGAGCATC 59.506 42.308 5.71 0.00 39.75 3.91
2191 2354 5.810080 AATACCCTACTGTAAGAGCATCC 57.190 43.478 0.00 0.00 37.43 3.51
2192 2355 3.406512 ACCCTACTGTAAGAGCATCCT 57.593 47.619 0.00 0.00 37.43 3.24
2193 2356 3.725634 ACCCTACTGTAAGAGCATCCTT 58.274 45.455 0.00 0.00 37.43 3.36
2194 2357 4.104831 ACCCTACTGTAAGAGCATCCTTT 58.895 43.478 0.00 0.00 37.43 3.11
2195 2358 4.536489 ACCCTACTGTAAGAGCATCCTTTT 59.464 41.667 0.00 0.00 37.43 2.27
2196 2359 5.119694 CCCTACTGTAAGAGCATCCTTTTC 58.880 45.833 0.00 0.00 37.43 2.29
2197 2360 5.119694 CCTACTGTAAGAGCATCCTTTTCC 58.880 45.833 0.00 0.00 37.43 3.13
2198 2361 3.956744 ACTGTAAGAGCATCCTTTTCCC 58.043 45.455 0.00 0.00 37.43 3.97
2199 2362 3.589288 ACTGTAAGAGCATCCTTTTCCCT 59.411 43.478 0.00 0.00 37.43 4.20
2200 2363 4.783227 ACTGTAAGAGCATCCTTTTCCCTA 59.217 41.667 0.00 0.00 37.43 3.53
2201 2364 5.104735 ACTGTAAGAGCATCCTTTTCCCTAG 60.105 44.000 0.00 0.00 37.43 3.02
2202 2365 3.941704 AAGAGCATCCTTTTCCCTAGG 57.058 47.619 0.06 0.06 33.66 3.02
2203 2366 2.131023 AGAGCATCCTTTTCCCTAGGG 58.869 52.381 23.22 23.22 33.66 3.53
2204 2367 1.847088 GAGCATCCTTTTCCCTAGGGT 59.153 52.381 27.58 3.56 36.47 4.34
2205 2368 2.242452 GAGCATCCTTTTCCCTAGGGTT 59.758 50.000 27.58 2.46 36.47 4.11
2206 2369 2.654896 AGCATCCTTTTCCCTAGGGTTT 59.345 45.455 27.58 3.16 36.47 3.27
2207 2370 3.077543 AGCATCCTTTTCCCTAGGGTTTT 59.922 43.478 27.58 4.21 36.47 2.43
2208 2371 3.195610 GCATCCTTTTCCCTAGGGTTTTG 59.804 47.826 27.58 15.51 36.47 2.44
2209 2372 3.536075 TCCTTTTCCCTAGGGTTTTGG 57.464 47.619 27.58 22.71 36.47 3.28
2210 2373 2.792967 TCCTTTTCCCTAGGGTTTTGGT 59.207 45.455 27.58 0.00 36.47 3.67
2211 2374 2.897326 CCTTTTCCCTAGGGTTTTGGTG 59.103 50.000 27.58 11.76 36.47 4.17
2212 2375 3.437344 CCTTTTCCCTAGGGTTTTGGTGA 60.437 47.826 27.58 2.15 36.47 4.02
2213 2376 4.416516 CTTTTCCCTAGGGTTTTGGTGAT 58.583 43.478 27.58 0.00 36.47 3.06
2214 2377 3.449746 TTCCCTAGGGTTTTGGTGATG 57.550 47.619 27.58 0.00 36.47 3.07
2215 2378 2.638325 TCCCTAGGGTTTTGGTGATGA 58.362 47.619 27.58 0.00 36.47 2.92
2216 2379 3.197983 TCCCTAGGGTTTTGGTGATGAT 58.802 45.455 27.58 0.00 36.47 2.45
2217 2380 3.053693 TCCCTAGGGTTTTGGTGATGATG 60.054 47.826 27.58 0.00 36.47 3.07
2218 2381 3.053693 CCCTAGGGTTTTGGTGATGATGA 60.054 47.826 20.88 0.00 0.00 2.92
2219 2382 3.947834 CCTAGGGTTTTGGTGATGATGAC 59.052 47.826 0.00 0.00 0.00 3.06
2220 2383 3.524095 AGGGTTTTGGTGATGATGACA 57.476 42.857 0.00 0.00 0.00 3.58
2221 2384 3.843422 AGGGTTTTGGTGATGATGACAA 58.157 40.909 0.00 0.00 0.00 3.18
2222 2385 3.573967 AGGGTTTTGGTGATGATGACAAC 59.426 43.478 0.00 0.00 0.00 3.32
2223 2386 3.320541 GGGTTTTGGTGATGATGACAACA 59.679 43.478 0.00 0.00 32.93 3.33
2224 2387 4.298332 GGTTTTGGTGATGATGACAACAC 58.702 43.478 0.00 0.00 45.02 3.32
2225 2388 4.202101 GGTTTTGGTGATGATGACAACACA 60.202 41.667 11.36 0.00 46.67 3.72
2226 2389 5.509501 GGTTTTGGTGATGATGACAACACAT 60.510 40.000 11.36 0.00 46.67 3.21
2227 2390 4.769859 TTGGTGATGATGACAACACATG 57.230 40.909 11.36 0.00 46.67 3.21
2228 2391 3.753815 TGGTGATGATGACAACACATGT 58.246 40.909 11.36 0.00 46.67 3.21
2229 2392 3.502979 TGGTGATGATGACAACACATGTG 59.497 43.478 24.25 24.25 46.67 3.21
2230 2393 3.119743 GGTGATGATGACAACACATGTGG 60.120 47.826 28.64 14.90 46.67 4.17
2231 2394 3.503363 GTGATGATGACAACACATGTGGT 59.497 43.478 28.64 21.46 45.07 4.16
2232 2395 3.752747 TGATGATGACAACACATGTGGTC 59.247 43.478 28.64 24.62 46.62 4.02
2233 2396 3.490439 TGATGACAACACATGTGGTCT 57.510 42.857 28.64 11.54 46.58 3.85
2234 2397 4.615588 TGATGACAACACATGTGGTCTA 57.384 40.909 28.64 16.60 46.58 2.59
2235 2398 4.967036 TGATGACAACACATGTGGTCTAA 58.033 39.130 28.64 12.83 46.58 2.10
2236 2399 5.559770 TGATGACAACACATGTGGTCTAAT 58.440 37.500 28.64 16.40 46.58 1.73
2237 2400 5.643348 TGATGACAACACATGTGGTCTAATC 59.357 40.000 28.64 22.29 46.58 1.75
2238 2401 3.993736 TGACAACACATGTGGTCTAATCG 59.006 43.478 28.64 12.53 46.58 3.34
2239 2402 3.994392 GACAACACATGTGGTCTAATCGT 59.006 43.478 28.64 15.72 43.84 3.73
2240 2403 3.745975 ACAACACATGTGGTCTAATCGTG 59.254 43.478 28.64 11.08 41.93 4.35
2241 2404 2.346803 ACACATGTGGTCTAATCGTGC 58.653 47.619 28.64 0.00 34.19 5.34
2242 2405 1.324435 CACATGTGGTCTAATCGTGCG 59.676 52.381 18.51 0.00 0.00 5.34
2243 2406 0.301687 CATGTGGTCTAATCGTGCGC 59.698 55.000 0.00 0.00 0.00 6.09
2244 2407 0.810031 ATGTGGTCTAATCGTGCGCC 60.810 55.000 4.18 0.00 0.00 6.53
2245 2408 1.447140 GTGGTCTAATCGTGCGCCA 60.447 57.895 4.18 0.00 0.00 5.69
2246 2409 0.810031 GTGGTCTAATCGTGCGCCAT 60.810 55.000 4.18 0.00 0.00 4.40
2247 2410 0.747852 TGGTCTAATCGTGCGCCATA 59.252 50.000 4.18 0.00 0.00 2.74
2248 2411 1.269569 TGGTCTAATCGTGCGCCATAG 60.270 52.381 4.18 0.15 0.00 2.23
2249 2412 0.784778 GTCTAATCGTGCGCCATAGC 59.215 55.000 4.18 0.00 37.71 2.97
2250 2413 0.673985 TCTAATCGTGCGCCATAGCT 59.326 50.000 4.18 0.00 38.13 3.32
2251 2414 1.068588 TCTAATCGTGCGCCATAGCTT 59.931 47.619 4.18 0.00 38.13 3.74
2252 2415 1.867233 CTAATCGTGCGCCATAGCTTT 59.133 47.619 4.18 0.00 38.13 3.51
2253 2416 0.657840 AATCGTGCGCCATAGCTTTC 59.342 50.000 4.18 0.00 38.13 2.62
2254 2417 0.179073 ATCGTGCGCCATAGCTTTCT 60.179 50.000 4.18 0.00 38.13 2.52
2255 2418 0.806102 TCGTGCGCCATAGCTTTCTC 60.806 55.000 4.18 0.00 38.13 2.87
2256 2419 1.083806 CGTGCGCCATAGCTTTCTCA 61.084 55.000 4.18 0.00 38.13 3.27
2257 2420 0.654683 GTGCGCCATAGCTTTCTCAG 59.345 55.000 4.18 0.00 38.13 3.35
2258 2421 0.462581 TGCGCCATAGCTTTCTCAGG 60.463 55.000 4.18 0.00 38.13 3.86
2259 2422 0.462759 GCGCCATAGCTTTCTCAGGT 60.463 55.000 0.00 0.00 36.60 4.00
2260 2423 1.202533 GCGCCATAGCTTTCTCAGGTA 60.203 52.381 0.00 0.00 39.84 3.08
2261 2424 2.474816 CGCCATAGCTTTCTCAGGTAC 58.525 52.381 0.00 0.00 38.32 3.34
2262 2425 2.159099 CGCCATAGCTTTCTCAGGTACA 60.159 50.000 0.00 0.00 38.32 2.90
2263 2426 3.198872 GCCATAGCTTTCTCAGGTACAC 58.801 50.000 0.00 0.00 38.32 2.90
2264 2427 3.118592 GCCATAGCTTTCTCAGGTACACT 60.119 47.826 0.00 0.00 38.32 3.55
2265 2428 4.624125 GCCATAGCTTTCTCAGGTACACTT 60.624 45.833 0.00 0.00 38.32 3.16
2266 2429 5.491982 CCATAGCTTTCTCAGGTACACTTT 58.508 41.667 0.00 0.00 38.32 2.66
2267 2430 5.352569 CCATAGCTTTCTCAGGTACACTTTG 59.647 44.000 0.00 0.00 38.32 2.77
2268 2431 4.423625 AGCTTTCTCAGGTACACTTTGT 57.576 40.909 0.00 0.00 0.00 2.83
2269 2432 4.130118 AGCTTTCTCAGGTACACTTTGTG 58.870 43.478 0.00 0.00 39.75 3.33
2271 2434 4.260784 GCTTTCTCAGGTACACTTTGTGTG 60.261 45.833 12.89 1.23 46.84 3.82
2272 2435 9.985474 TAGCTTTCTCAGGTACACTTTGTGTGG 62.985 44.444 12.89 1.66 46.84 4.17
2278 2441 4.307258 CACTTTGTGTGGCGCAAG 57.693 55.556 10.83 5.44 42.68 4.01
2279 2442 1.726865 CACTTTGTGTGGCGCAAGA 59.273 52.632 10.83 0.00 42.68 3.02
2288 2451 2.818274 GGCGCAAGACGGTTAGGG 60.818 66.667 10.83 0.00 43.93 3.53
2289 2452 2.047560 GCGCAAGACGGTTAGGGT 60.048 61.111 0.30 0.00 43.93 4.34
2290 2453 1.670083 GCGCAAGACGGTTAGGGTT 60.670 57.895 0.30 0.00 43.93 4.11
2291 2454 1.632948 GCGCAAGACGGTTAGGGTTC 61.633 60.000 0.30 0.00 43.93 3.62
2292 2455 1.017701 CGCAAGACGGTTAGGGTTCC 61.018 60.000 0.00 0.00 43.02 3.62
2293 2456 0.675837 GCAAGACGGTTAGGGTTCCC 60.676 60.000 0.00 0.00 0.00 3.97
2294 2457 0.981943 CAAGACGGTTAGGGTTCCCT 59.018 55.000 15.19 15.19 40.06 4.20
2295 2458 1.066358 CAAGACGGTTAGGGTTCCCTC 60.066 57.143 14.24 0.81 37.64 4.30
2296 2459 0.412640 AGACGGTTAGGGTTCCCTCT 59.587 55.000 14.24 1.57 37.64 3.69
2297 2460 0.535797 GACGGTTAGGGTTCCCTCTG 59.464 60.000 14.24 8.56 37.64 3.35
2298 2461 0.178912 ACGGTTAGGGTTCCCTCTGT 60.179 55.000 14.24 9.19 37.64 3.41
2299 2462 0.249398 CGGTTAGGGTTCCCTCTGTG 59.751 60.000 14.24 0.13 37.64 3.66
2300 2463 0.035343 GGTTAGGGTTCCCTCTGTGC 60.035 60.000 14.24 1.83 37.64 4.57
2301 2464 0.391263 GTTAGGGTTCCCTCTGTGCG 60.391 60.000 14.24 0.00 37.64 5.34
2302 2465 1.550130 TTAGGGTTCCCTCTGTGCGG 61.550 60.000 14.24 0.00 37.64 5.69
2303 2466 2.449967 TAGGGTTCCCTCTGTGCGGA 62.450 60.000 14.24 0.00 37.64 5.54
2304 2467 2.747686 GGTTCCCTCTGTGCGGAA 59.252 61.111 0.00 0.00 35.76 4.30
2305 2468 1.072505 GGTTCCCTCTGTGCGGAAA 59.927 57.895 0.00 0.00 39.81 3.13
2306 2469 0.536460 GGTTCCCTCTGTGCGGAAAA 60.536 55.000 0.00 0.00 39.81 2.29
2307 2470 0.875059 GTTCCCTCTGTGCGGAAAAG 59.125 55.000 0.00 0.00 39.81 2.27
2308 2471 0.762418 TTCCCTCTGTGCGGAAAAGA 59.238 50.000 0.00 0.00 35.19 2.52
2309 2472 0.984230 TCCCTCTGTGCGGAAAAGAT 59.016 50.000 0.00 0.00 0.00 2.40
2310 2473 1.066143 TCCCTCTGTGCGGAAAAGATC 60.066 52.381 0.00 0.00 0.00 2.75
2311 2474 1.002366 CCTCTGTGCGGAAAAGATCG 58.998 55.000 0.00 0.00 0.00 3.69
2312 2475 1.404181 CCTCTGTGCGGAAAAGATCGA 60.404 52.381 0.00 0.00 0.00 3.59
2313 2476 2.337583 CTCTGTGCGGAAAAGATCGAA 58.662 47.619 0.00 0.00 0.00 3.71
2314 2477 2.337583 TCTGTGCGGAAAAGATCGAAG 58.662 47.619 0.00 0.00 0.00 3.79
2315 2478 2.029380 TCTGTGCGGAAAAGATCGAAGA 60.029 45.455 0.00 0.00 45.75 2.87
2316 2479 2.932614 CTGTGCGGAAAAGATCGAAGAT 59.067 45.455 0.00 0.00 45.12 2.40
2317 2480 2.672874 TGTGCGGAAAAGATCGAAGATG 59.327 45.455 0.00 0.00 45.12 2.90
2318 2481 2.030946 GTGCGGAAAAGATCGAAGATGG 59.969 50.000 0.00 0.00 45.12 3.51
2319 2482 2.093711 TGCGGAAAAGATCGAAGATGGA 60.094 45.455 0.00 0.00 45.12 3.41
2320 2483 2.541762 GCGGAAAAGATCGAAGATGGAG 59.458 50.000 0.00 0.00 45.12 3.86
2321 2484 3.786635 CGGAAAAGATCGAAGATGGAGT 58.213 45.455 0.00 0.00 45.12 3.85
2322 2485 4.184629 CGGAAAAGATCGAAGATGGAGTT 58.815 43.478 0.00 0.00 45.12 3.01
2323 2486 4.631813 CGGAAAAGATCGAAGATGGAGTTT 59.368 41.667 0.00 0.00 45.12 2.66
2324 2487 5.220491 CGGAAAAGATCGAAGATGGAGTTTC 60.220 44.000 0.00 0.00 45.12 2.78
2325 2488 5.065346 GGAAAAGATCGAAGATGGAGTTTCC 59.935 44.000 0.00 0.00 45.12 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 286 4.039730 CCCATACTGATAGTTCCACTCCAG 59.960 50.000 0.00 0.00 36.06 3.86
358 362 9.817809 GACAATCTAACTTCCATATCTAACACA 57.182 33.333 0.00 0.00 0.00 3.72
378 382 4.965119 AATTGACTTTAGCCGGACAATC 57.035 40.909 5.05 0.00 0.00 2.67
379 383 5.722021 AAAATTGACTTTAGCCGGACAAT 57.278 34.783 5.05 1.89 0.00 2.71
531 540 2.030805 CCAAACCTCCTTCGCTTTTCTG 60.031 50.000 0.00 0.00 0.00 3.02
601 610 0.111061 AATGTTGCCTCTCCAGCACA 59.889 50.000 0.00 0.00 40.69 4.57
705 714 6.500589 TTCCTTCTTTCCCACCATAGATAG 57.499 41.667 0.00 0.00 0.00 2.08
819 829 2.562738 CCCCTTTTTCATGGACACCTTC 59.437 50.000 0.00 0.00 0.00 3.46
920 930 0.105039 GTCTCTCAATACTGCCCCCG 59.895 60.000 0.00 0.00 0.00 5.73
1420 1431 3.136626 AGTTAGAGGGATGGGTTACATGC 59.863 47.826 0.00 0.00 46.15 4.06
1481 1508 4.021719 AGTTGTGTCTAGCCTTAACGCTTA 60.022 41.667 4.24 0.00 40.39 3.09
1484 1511 2.685100 AGTTGTGTCTAGCCTTAACGC 58.315 47.619 0.00 0.00 0.00 4.84
1506 1533 0.759346 CGTATAAGCCAGCTCCCCTT 59.241 55.000 0.00 0.00 0.00 3.95
1510 1537 1.664965 CGCCGTATAAGCCAGCTCC 60.665 63.158 0.00 0.00 0.00 4.70
1520 1547 1.162181 CGTGAGGGAGTCGCCGTATA 61.162 60.000 3.13 0.00 37.63 1.47
1521 1548 2.478890 CGTGAGGGAGTCGCCGTAT 61.479 63.158 3.13 0.00 37.63 3.06
1538 1565 2.297315 TGGCTAGGTCTCATTATGCTCG 59.703 50.000 0.00 0.00 0.00 5.03
1587 1614 2.513897 GAGCCCCGGGAAACATCG 60.514 66.667 26.32 3.67 0.00 3.84
1603 1630 4.220821 AGACAAGGATTTAGACAGCTTCGA 59.779 41.667 0.00 0.00 0.00 3.71
1662 1690 5.780958 AAGTGATAGCTTAAGAGGGGTTT 57.219 39.130 6.67 0.00 0.00 3.27
1672 1700 5.637810 GCCAACGCATATAAGTGATAGCTTA 59.362 40.000 0.00 0.00 33.73 3.09
1679 1707 2.169561 TGAGGCCAACGCATATAAGTGA 59.830 45.455 5.01 0.00 36.38 3.41
1683 1711 1.137282 TCGTGAGGCCAACGCATATAA 59.863 47.619 22.28 5.17 36.38 0.98
1769 1799 0.321919 ACTCAACATCACCATGCGCT 60.322 50.000 9.73 0.00 32.57 5.92
1780 1810 1.611673 CGCCCTCCAAGAACTCAACAT 60.612 52.381 0.00 0.00 0.00 2.71
1826 1856 0.511653 GAACTTTTCGACGAGGTGGC 59.488 55.000 0.00 0.00 0.00 5.01
1830 1860 1.058404 GACGGAACTTTTCGACGAGG 58.942 55.000 0.00 0.00 0.00 4.63
1834 1864 1.894223 GCCGGACGGAACTTTTCGAC 61.894 60.000 15.99 0.00 37.50 4.20
1848 1965 3.004862 GGAACTTTTTCGATAAGCCGGA 58.995 45.455 5.05 0.00 31.78 5.14
1857 1974 1.962306 CCGGCCGGAACTTTTTCGA 60.962 57.895 41.82 0.00 37.50 3.71
1873 1990 0.110823 CAAAACTTTCCGACGAGCCG 60.111 55.000 0.00 0.00 0.00 5.52
1880 1997 2.557372 GCCGGCCAAAACTTTCCGA 61.557 57.895 18.11 0.00 44.23 4.55
1883 2000 0.603065 ATGAGCCGGCCAAAACTTTC 59.397 50.000 26.15 12.32 0.00 2.62
1884 2001 0.603065 GATGAGCCGGCCAAAACTTT 59.397 50.000 26.15 0.00 0.00 2.66
1885 2002 0.539438 TGATGAGCCGGCCAAAACTT 60.539 50.000 26.15 0.94 0.00 2.66
1886 2003 0.539438 TTGATGAGCCGGCCAAAACT 60.539 50.000 26.15 1.92 0.00 2.66
1887 2004 0.316841 TTTGATGAGCCGGCCAAAAC 59.683 50.000 26.15 15.76 0.00 2.43
1888 2005 1.043816 TTTTGATGAGCCGGCCAAAA 58.956 45.000 27.08 27.08 36.51 2.44
1889 2006 1.043816 TTTTTGATGAGCCGGCCAAA 58.956 45.000 26.15 22.60 0.00 3.28
1890 2007 2.738812 TTTTTGATGAGCCGGCCAA 58.261 47.368 26.15 17.63 0.00 4.52
1891 2008 4.509902 TTTTTGATGAGCCGGCCA 57.490 50.000 26.15 21.45 0.00 5.36
1961 2104 3.007398 AGTCAGAACTCTTTGGCGATTCT 59.993 43.478 0.00 0.00 0.00 2.40
1979 2141 2.839486 ACTTTTCATCGAGGCAGTCA 57.161 45.000 0.00 0.00 0.00 3.41
1983 2145 1.270625 ACGGAACTTTTCATCGAGGCA 60.271 47.619 0.00 0.00 0.00 4.75
2018 2181 1.300620 CGTCAAGGCAGTCGGAACA 60.301 57.895 0.00 0.00 0.00 3.18
2027 2190 0.941542 CGGAACTTTTCGTCAAGGCA 59.058 50.000 0.00 0.00 0.00 4.75
2053 2216 2.036089 GAGATCCTCCGGTATTGACACC 59.964 54.545 0.00 0.00 35.04 4.16
2054 2217 2.287668 CGAGATCCTCCGGTATTGACAC 60.288 54.545 0.00 0.00 0.00 3.67
2055 2218 1.954382 CGAGATCCTCCGGTATTGACA 59.046 52.381 0.00 0.00 0.00 3.58
2056 2219 1.269998 CCGAGATCCTCCGGTATTGAC 59.730 57.143 0.00 0.00 40.78 3.18
2057 2220 1.617322 CCGAGATCCTCCGGTATTGA 58.383 55.000 0.00 0.00 40.78 2.57
2058 2221 0.603569 CCCGAGATCCTCCGGTATTG 59.396 60.000 14.92 0.00 43.93 1.90
2061 2224 0.399454 CTACCCGAGATCCTCCGGTA 59.601 60.000 14.92 11.66 41.09 4.02
2062 2225 1.150992 CTACCCGAGATCCTCCGGT 59.849 63.158 14.92 10.79 42.74 5.28
2063 2226 1.604023 CCTACCCGAGATCCTCCGG 60.604 68.421 10.73 10.73 44.94 5.14
2064 2227 1.604023 CCCTACCCGAGATCCTCCG 60.604 68.421 0.00 0.00 0.00 4.63
2065 2228 1.228925 CCCCTACCCGAGATCCTCC 60.229 68.421 0.00 0.00 0.00 4.30
2066 2229 1.228925 CCCCCTACCCGAGATCCTC 60.229 68.421 0.00 0.00 0.00 3.71
2067 2230 2.019272 ACCCCCTACCCGAGATCCT 61.019 63.158 0.00 0.00 0.00 3.24
2068 2231 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
2070 2233 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
2071 2234 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
2075 2238 1.543134 AGTTTGGGACCCCCTACCC 60.543 63.158 8.45 0.00 45.70 3.69
2076 2239 1.138228 ACAGTTTGGGACCCCCTACC 61.138 60.000 8.45 0.00 45.70 3.18
2078 2241 1.785353 GCACAGTTTGGGACCCCCTA 61.785 60.000 8.45 0.00 45.70 3.53
2079 2242 3.146828 GCACAGTTTGGGACCCCCT 62.147 63.158 8.45 0.00 45.70 4.79
2081 2244 2.983592 CGCACAGTTTGGGACCCC 60.984 66.667 8.45 2.69 40.70 4.95
2082 2245 2.203294 ACGCACAGTTTGGGACCC 60.203 61.111 2.45 2.45 40.70 4.46
2083 2246 0.034337 TAGACGCACAGTTTGGGACC 59.966 55.000 0.00 0.00 40.70 4.46
2085 2248 1.270625 CCTTAGACGCACAGTTTGGGA 60.271 52.381 0.00 0.00 40.70 4.37
2086 2249 1.156736 CCTTAGACGCACAGTTTGGG 58.843 55.000 0.00 0.00 43.87 4.12
2087 2250 1.798813 GACCTTAGACGCACAGTTTGG 59.201 52.381 0.00 0.00 0.00 3.28
2089 2252 1.338973 TCGACCTTAGACGCACAGTTT 59.661 47.619 0.00 0.00 0.00 2.66
2090 2253 0.956633 TCGACCTTAGACGCACAGTT 59.043 50.000 0.00 0.00 0.00 3.16
2091 2254 1.135373 CATCGACCTTAGACGCACAGT 60.135 52.381 0.00 0.00 0.00 3.55
2094 2257 0.172803 ACCATCGACCTTAGACGCAC 59.827 55.000 0.00 0.00 0.00 5.34
2095 2258 1.753930 TACCATCGACCTTAGACGCA 58.246 50.000 0.00 0.00 0.00 5.24
2096 2259 2.159338 TGTTACCATCGACCTTAGACGC 60.159 50.000 0.00 0.00 0.00 5.19
2097 2260 3.488721 CCTGTTACCATCGACCTTAGACG 60.489 52.174 0.00 0.00 0.00 4.18
2098 2261 3.698040 TCCTGTTACCATCGACCTTAGAC 59.302 47.826 0.00 0.00 0.00 2.59
2099 2262 3.952323 CTCCTGTTACCATCGACCTTAGA 59.048 47.826 0.00 0.00 0.00 2.10
2100 2263 3.068307 CCTCCTGTTACCATCGACCTTAG 59.932 52.174 0.00 0.00 0.00 2.18
2101 2264 3.028850 CCTCCTGTTACCATCGACCTTA 58.971 50.000 0.00 0.00 0.00 2.69
2102 2265 1.831736 CCTCCTGTTACCATCGACCTT 59.168 52.381 0.00 0.00 0.00 3.50
2103 2266 1.486211 CCTCCTGTTACCATCGACCT 58.514 55.000 0.00 0.00 0.00 3.85
2104 2267 0.179081 GCCTCCTGTTACCATCGACC 60.179 60.000 0.00 0.00 0.00 4.79
2105 2268 0.527817 CGCCTCCTGTTACCATCGAC 60.528 60.000 0.00 0.00 0.00 4.20
2106 2269 1.672854 CCGCCTCCTGTTACCATCGA 61.673 60.000 0.00 0.00 0.00 3.59
2107 2270 1.227263 CCGCCTCCTGTTACCATCG 60.227 63.158 0.00 0.00 0.00 3.84
2108 2271 1.146263 CCCGCCTCCTGTTACCATC 59.854 63.158 0.00 0.00 0.00 3.51
2109 2272 2.375345 CCCCGCCTCCTGTTACCAT 61.375 63.158 0.00 0.00 0.00 3.55
2110 2273 3.006728 CCCCGCCTCCTGTTACCA 61.007 66.667 0.00 0.00 0.00 3.25
2111 2274 3.793888 CCCCCGCCTCCTGTTACC 61.794 72.222 0.00 0.00 0.00 2.85
2112 2275 2.686106 TCCCCCGCCTCCTGTTAC 60.686 66.667 0.00 0.00 0.00 2.50
2113 2276 2.686106 GTCCCCCGCCTCCTGTTA 60.686 66.667 0.00 0.00 0.00 2.41
2114 2277 4.974438 TGTCCCCCGCCTCCTGTT 62.974 66.667 0.00 0.00 0.00 3.16
2119 2282 4.530857 CATCGTGTCCCCCGCCTC 62.531 72.222 0.00 0.00 0.00 4.70
2121 2284 2.524951 TAAACATCGTGTCCCCCGCC 62.525 60.000 0.00 0.00 0.00 6.13
2122 2285 1.078988 TAAACATCGTGTCCCCCGC 60.079 57.895 0.00 0.00 0.00 6.13
2123 2286 0.741927 GGTAAACATCGTGTCCCCCG 60.742 60.000 0.00 0.00 0.00 5.73
2124 2287 0.393402 GGGTAAACATCGTGTCCCCC 60.393 60.000 0.00 0.00 30.72 5.40
2125 2288 0.325602 TGGGTAAACATCGTGTCCCC 59.674 55.000 9.39 10.06 34.88 4.81
2126 2289 1.677820 CCTGGGTAAACATCGTGTCCC 60.678 57.143 0.00 0.00 35.85 4.46
2127 2290 1.002773 ACCTGGGTAAACATCGTGTCC 59.997 52.381 0.00 0.00 0.00 4.02
2128 2291 2.467566 ACCTGGGTAAACATCGTGTC 57.532 50.000 0.00 0.00 0.00 3.67
2129 2292 2.774687 GAACCTGGGTAAACATCGTGT 58.225 47.619 0.00 0.00 0.00 4.49
2130 2293 1.730064 CGAACCTGGGTAAACATCGTG 59.270 52.381 0.00 0.00 0.00 4.35
2131 2294 1.338389 CCGAACCTGGGTAAACATCGT 60.338 52.381 0.00 0.00 0.00 3.73
2132 2295 1.365699 CCGAACCTGGGTAAACATCG 58.634 55.000 0.00 4.42 0.00 3.84
2133 2296 1.746470 CCCGAACCTGGGTAAACATC 58.254 55.000 0.00 0.00 44.76 3.06
2134 2297 3.970205 CCCGAACCTGGGTAAACAT 57.030 52.632 0.00 0.00 44.76 2.71
2142 2305 2.873557 TAGAGAGGGCCCGAACCTGG 62.874 65.000 18.44 0.00 38.79 4.45
2143 2306 0.760945 ATAGAGAGGGCCCGAACCTG 60.761 60.000 18.44 0.00 38.79 4.00
2144 2307 0.031010 AATAGAGAGGGCCCGAACCT 60.031 55.000 18.44 14.71 42.18 3.50
2145 2308 0.106894 CAATAGAGAGGGCCCGAACC 59.893 60.000 18.44 7.31 0.00 3.62
2146 2309 1.069358 CTCAATAGAGAGGGCCCGAAC 59.931 57.143 18.44 12.45 44.98 3.95
2147 2310 1.414158 CTCAATAGAGAGGGCCCGAA 58.586 55.000 18.44 0.98 44.98 4.30
2148 2311 3.133437 CTCAATAGAGAGGGCCCGA 57.867 57.895 18.44 3.54 44.98 5.14
2155 2318 7.945664 ACAGTAGGGTATTACCTCAATAGAGAG 59.054 40.741 12.54 0.00 44.98 3.20
2156 2319 7.823635 ACAGTAGGGTATTACCTCAATAGAGA 58.176 38.462 12.54 0.00 44.98 3.10
2157 2320 9.584008 TTACAGTAGGGTATTACCTCAATAGAG 57.416 37.037 12.54 0.00 42.09 2.43
2158 2321 9.584008 CTTACAGTAGGGTATTACCTCAATAGA 57.416 37.037 12.54 0.00 42.09 1.98
2159 2322 9.584008 TCTTACAGTAGGGTATTACCTCAATAG 57.416 37.037 12.54 2.40 42.09 1.73
2160 2323 9.584008 CTCTTACAGTAGGGTATTACCTCAATA 57.416 37.037 12.54 0.00 42.09 1.90
2161 2324 7.015389 GCTCTTACAGTAGGGTATTACCTCAAT 59.985 40.741 12.54 0.00 42.09 2.57
2162 2325 6.323225 GCTCTTACAGTAGGGTATTACCTCAA 59.677 42.308 12.54 0.00 42.09 3.02
2163 2326 5.832060 GCTCTTACAGTAGGGTATTACCTCA 59.168 44.000 12.54 0.00 42.09 3.86
2164 2327 5.832060 TGCTCTTACAGTAGGGTATTACCTC 59.168 44.000 12.54 3.41 42.09 3.85
2165 2328 5.774179 TGCTCTTACAGTAGGGTATTACCT 58.226 41.667 12.54 2.07 44.75 3.08
2166 2329 6.295180 GGATGCTCTTACAGTAGGGTATTACC 60.295 46.154 4.11 4.11 37.60 2.85
2167 2330 6.494146 AGGATGCTCTTACAGTAGGGTATTAC 59.506 42.308 0.00 0.00 0.00 1.89
2168 2331 6.621394 AGGATGCTCTTACAGTAGGGTATTA 58.379 40.000 0.00 0.00 0.00 0.98
2169 2332 5.468658 AGGATGCTCTTACAGTAGGGTATT 58.531 41.667 0.00 0.00 0.00 1.89
2170 2333 5.081315 AGGATGCTCTTACAGTAGGGTAT 57.919 43.478 0.00 0.00 0.00 2.73
2171 2334 4.537945 AGGATGCTCTTACAGTAGGGTA 57.462 45.455 0.00 0.00 0.00 3.69
2172 2335 3.406512 AGGATGCTCTTACAGTAGGGT 57.593 47.619 0.00 0.00 0.00 4.34
2173 2336 4.762289 AAAGGATGCTCTTACAGTAGGG 57.238 45.455 0.00 0.00 0.00 3.53
2174 2337 5.119694 GGAAAAGGATGCTCTTACAGTAGG 58.880 45.833 0.00 0.00 0.00 3.18
2175 2338 5.104735 AGGGAAAAGGATGCTCTTACAGTAG 60.105 44.000 0.00 0.00 0.00 2.57
2176 2339 4.783227 AGGGAAAAGGATGCTCTTACAGTA 59.217 41.667 0.00 0.00 0.00 2.74
2177 2340 3.589288 AGGGAAAAGGATGCTCTTACAGT 59.411 43.478 0.00 0.00 0.00 3.55
2178 2341 4.227864 AGGGAAAAGGATGCTCTTACAG 57.772 45.455 0.00 0.00 0.00 2.74
2179 2342 4.164221 CCTAGGGAAAAGGATGCTCTTACA 59.836 45.833 0.00 0.00 36.08 2.41
2180 2343 4.445019 CCCTAGGGAAAAGGATGCTCTTAC 60.445 50.000 24.99 0.00 36.08 2.34
2181 2344 3.716872 CCCTAGGGAAAAGGATGCTCTTA 59.283 47.826 24.99 0.00 36.08 2.10
2182 2345 2.511637 CCCTAGGGAAAAGGATGCTCTT 59.488 50.000 24.99 0.00 36.08 2.85
2183 2346 2.131023 CCCTAGGGAAAAGGATGCTCT 58.869 52.381 24.99 0.00 36.08 4.09
2184 2347 1.847088 ACCCTAGGGAAAAGGATGCTC 59.153 52.381 35.38 0.00 36.08 4.26
2185 2348 1.987080 ACCCTAGGGAAAAGGATGCT 58.013 50.000 35.38 4.38 36.08 3.79
2186 2349 2.828661 AACCCTAGGGAAAAGGATGC 57.171 50.000 35.38 0.00 36.08 3.91
2187 2350 3.769300 CCAAAACCCTAGGGAAAAGGATG 59.231 47.826 35.38 19.77 36.08 3.51
2188 2351 3.404769 ACCAAAACCCTAGGGAAAAGGAT 59.595 43.478 35.38 16.14 36.08 3.24
2189 2352 2.792967 ACCAAAACCCTAGGGAAAAGGA 59.207 45.455 35.38 0.00 36.08 3.36
2190 2353 2.897326 CACCAAAACCCTAGGGAAAAGG 59.103 50.000 35.38 28.10 38.96 3.11
2191 2354 3.839778 TCACCAAAACCCTAGGGAAAAG 58.160 45.455 35.38 19.48 38.96 2.27
2192 2355 3.975479 TCACCAAAACCCTAGGGAAAA 57.025 42.857 35.38 7.48 38.96 2.29
2193 2356 3.399644 TCATCACCAAAACCCTAGGGAAA 59.600 43.478 35.38 9.87 38.96 3.13
2194 2357 2.990284 TCATCACCAAAACCCTAGGGAA 59.010 45.455 35.38 8.83 38.96 3.97
2195 2358 2.638325 TCATCACCAAAACCCTAGGGA 58.362 47.619 35.38 9.66 38.96 4.20
2196 2359 3.053693 TCATCATCACCAAAACCCTAGGG 60.054 47.826 27.36 27.36 42.03 3.53
2197 2360 3.947834 GTCATCATCACCAAAACCCTAGG 59.052 47.826 0.06 0.06 0.00 3.02
2198 2361 4.588899 TGTCATCATCACCAAAACCCTAG 58.411 43.478 0.00 0.00 0.00 3.02
2199 2362 4.649267 TGTCATCATCACCAAAACCCTA 57.351 40.909 0.00 0.00 0.00 3.53
2200 2363 3.524095 TGTCATCATCACCAAAACCCT 57.476 42.857 0.00 0.00 0.00 4.34
2201 2364 3.320541 TGTTGTCATCATCACCAAAACCC 59.679 43.478 0.00 0.00 0.00 4.11
2202 2365 4.202101 TGTGTTGTCATCATCACCAAAACC 60.202 41.667 6.87 0.00 41.12 3.27
2203 2366 4.930963 TGTGTTGTCATCATCACCAAAAC 58.069 39.130 6.87 0.00 41.12 2.43
2204 2367 5.068855 ACATGTGTTGTCATCATCACCAAAA 59.931 36.000 0.00 0.00 41.12 2.44
2205 2368 4.583907 ACATGTGTTGTCATCATCACCAAA 59.416 37.500 0.00 0.00 41.12 3.28
2206 2369 4.023021 CACATGTGTTGTCATCATCACCAA 60.023 41.667 18.03 0.00 41.12 3.67
2207 2370 3.502979 CACATGTGTTGTCATCATCACCA 59.497 43.478 18.03 0.00 41.12 4.17
2208 2371 3.119743 CCACATGTGTTGTCATCATCACC 60.120 47.826 23.79 0.00 41.12 4.02
2209 2372 3.503363 ACCACATGTGTTGTCATCATCAC 59.497 43.478 23.79 0.00 41.76 3.06
2210 2373 3.752747 GACCACATGTGTTGTCATCATCA 59.247 43.478 23.79 0.00 39.61 3.07
2211 2374 4.005650 AGACCACATGTGTTGTCATCATC 58.994 43.478 26.78 11.61 41.53 2.92
2212 2375 4.025040 AGACCACATGTGTTGTCATCAT 57.975 40.909 26.78 11.39 41.53 2.45
2213 2376 3.490439 AGACCACATGTGTTGTCATCA 57.510 42.857 26.78 0.00 41.53 3.07
2214 2377 5.220472 CGATTAGACCACATGTGTTGTCATC 60.220 44.000 26.78 21.45 41.53 2.92
2215 2378 4.631377 CGATTAGACCACATGTGTTGTCAT 59.369 41.667 26.78 17.29 41.53 3.06
2216 2379 3.993736 CGATTAGACCACATGTGTTGTCA 59.006 43.478 26.78 14.32 41.53 3.58
2217 2380 3.994392 ACGATTAGACCACATGTGTTGTC 59.006 43.478 23.79 22.26 39.98 3.18
2218 2381 3.745975 CACGATTAGACCACATGTGTTGT 59.254 43.478 23.79 15.52 39.91 3.32
2219 2382 3.424829 GCACGATTAGACCACATGTGTTG 60.425 47.826 23.79 12.35 0.00 3.33
2220 2383 2.742053 GCACGATTAGACCACATGTGTT 59.258 45.455 23.79 10.81 0.00 3.32
2221 2384 2.346803 GCACGATTAGACCACATGTGT 58.653 47.619 23.79 12.31 0.00 3.72
2222 2385 1.324435 CGCACGATTAGACCACATGTG 59.676 52.381 19.31 19.31 0.00 3.21
2223 2386 1.640428 CGCACGATTAGACCACATGT 58.360 50.000 0.00 0.00 0.00 3.21
2224 2387 0.301687 GCGCACGATTAGACCACATG 59.698 55.000 0.30 0.00 0.00 3.21
2225 2388 0.810031 GGCGCACGATTAGACCACAT 60.810 55.000 10.83 0.00 0.00 3.21
2226 2389 1.447140 GGCGCACGATTAGACCACA 60.447 57.895 10.83 0.00 0.00 4.17
2227 2390 0.810031 ATGGCGCACGATTAGACCAC 60.810 55.000 10.83 0.00 0.00 4.16
2228 2391 0.747852 TATGGCGCACGATTAGACCA 59.252 50.000 10.83 0.00 0.00 4.02
2229 2392 1.419374 CTATGGCGCACGATTAGACC 58.581 55.000 10.83 0.00 0.00 3.85
2230 2393 0.784778 GCTATGGCGCACGATTAGAC 59.215 55.000 10.83 0.00 0.00 2.59
2231 2394 0.673985 AGCTATGGCGCACGATTAGA 59.326 50.000 10.83 0.00 44.37 2.10
2232 2395 1.502231 AAGCTATGGCGCACGATTAG 58.498 50.000 10.83 3.39 44.37 1.73
2233 2396 1.864711 GAAAGCTATGGCGCACGATTA 59.135 47.619 10.83 0.00 44.37 1.75
2234 2397 0.657840 GAAAGCTATGGCGCACGATT 59.342 50.000 10.83 0.00 44.37 3.34
2235 2398 0.179073 AGAAAGCTATGGCGCACGAT 60.179 50.000 10.83 0.00 44.37 3.73
2236 2399 0.806102 GAGAAAGCTATGGCGCACGA 60.806 55.000 10.83 0.00 44.37 4.35
2237 2400 1.083806 TGAGAAAGCTATGGCGCACG 61.084 55.000 10.83 0.00 44.37 5.34
2238 2401 0.654683 CTGAGAAAGCTATGGCGCAC 59.345 55.000 10.83 0.00 44.37 5.34
2239 2402 0.462581 CCTGAGAAAGCTATGGCGCA 60.463 55.000 10.83 0.00 44.37 6.09
2240 2403 0.462759 ACCTGAGAAAGCTATGGCGC 60.463 55.000 0.00 0.00 44.37 6.53
2241 2404 2.159099 TGTACCTGAGAAAGCTATGGCG 60.159 50.000 0.00 0.00 44.37 5.69
2242 2405 3.118592 AGTGTACCTGAGAAAGCTATGGC 60.119 47.826 0.00 0.00 39.06 4.40
2243 2406 4.744795 AGTGTACCTGAGAAAGCTATGG 57.255 45.455 0.00 0.00 0.00 2.74
2244 2407 5.934625 ACAAAGTGTACCTGAGAAAGCTATG 59.065 40.000 0.00 0.00 0.00 2.23
2245 2408 5.934625 CACAAAGTGTACCTGAGAAAGCTAT 59.065 40.000 0.00 0.00 0.00 2.97
2246 2409 5.163343 ACACAAAGTGTACCTGAGAAAGCTA 60.163 40.000 0.15 0.00 45.56 3.32
2247 2410 4.130118 CACAAAGTGTACCTGAGAAAGCT 58.870 43.478 0.00 0.00 0.00 3.74
2248 2411 3.877508 ACACAAAGTGTACCTGAGAAAGC 59.122 43.478 0.15 0.00 45.56 3.51
2249 2412 4.273480 CCACACAAAGTGTACCTGAGAAAG 59.727 45.833 2.07 0.00 45.65 2.62
2250 2413 4.196193 CCACACAAAGTGTACCTGAGAAA 58.804 43.478 2.07 0.00 45.65 2.52
2251 2414 3.804036 CCACACAAAGTGTACCTGAGAA 58.196 45.455 2.07 0.00 45.65 2.87
2252 2415 2.484770 GCCACACAAAGTGTACCTGAGA 60.485 50.000 2.07 0.00 45.65 3.27
2253 2416 1.873591 GCCACACAAAGTGTACCTGAG 59.126 52.381 2.07 0.00 45.65 3.35
2254 2417 1.808512 CGCCACACAAAGTGTACCTGA 60.809 52.381 2.07 0.00 45.65 3.86
2255 2418 0.586319 CGCCACACAAAGTGTACCTG 59.414 55.000 2.07 0.00 45.65 4.00
2256 2419 1.164041 GCGCCACACAAAGTGTACCT 61.164 55.000 0.00 0.00 45.65 3.08
2257 2420 1.281656 GCGCCACACAAAGTGTACC 59.718 57.895 0.00 0.00 45.65 3.34
2258 2421 0.378962 TTGCGCCACACAAAGTGTAC 59.621 50.000 4.18 0.00 45.65 2.90
2259 2422 0.660488 CTTGCGCCACACAAAGTGTA 59.340 50.000 4.18 0.00 45.65 2.90
2262 2425 1.727467 GTCTTGCGCCACACAAAGT 59.273 52.632 4.18 0.00 0.00 2.66
2263 2426 1.369209 CGTCTTGCGCCACACAAAG 60.369 57.895 4.18 0.00 0.00 2.77
2264 2427 2.712539 CGTCTTGCGCCACACAAA 59.287 55.556 4.18 0.00 0.00 2.83
2265 2428 3.276091 CCGTCTTGCGCCACACAA 61.276 61.111 4.18 0.00 39.71 3.33
2266 2429 2.646117 TAACCGTCTTGCGCCACACA 62.646 55.000 4.18 0.00 39.71 3.72
2267 2430 1.897398 CTAACCGTCTTGCGCCACAC 61.897 60.000 4.18 0.00 39.71 3.82
2268 2431 1.666553 CTAACCGTCTTGCGCCACA 60.667 57.895 4.18 0.00 39.71 4.17
2269 2432 2.388232 CCTAACCGTCTTGCGCCAC 61.388 63.158 4.18 0.00 39.71 5.01
2270 2433 2.047655 CCTAACCGTCTTGCGCCA 60.048 61.111 4.18 0.00 39.71 5.69
2271 2434 2.818274 CCCTAACCGTCTTGCGCC 60.818 66.667 4.18 0.00 39.71 6.53
2272 2435 1.632948 GAACCCTAACCGTCTTGCGC 61.633 60.000 0.00 0.00 39.71 6.09
2273 2436 1.017701 GGAACCCTAACCGTCTTGCG 61.018 60.000 0.00 0.00 40.95 4.85
2274 2437 2.850439 GGAACCCTAACCGTCTTGC 58.150 57.895 0.00 0.00 0.00 4.01
2288 2451 0.875059 CTTTTCCGCACAGAGGGAAC 59.125 55.000 0.00 0.00 41.80 3.62
2289 2452 0.762418 TCTTTTCCGCACAGAGGGAA 59.238 50.000 0.00 0.00 40.44 3.97
2290 2453 0.984230 ATCTTTTCCGCACAGAGGGA 59.016 50.000 0.00 0.00 0.00 4.20
2291 2454 1.373570 GATCTTTTCCGCACAGAGGG 58.626 55.000 0.00 0.00 0.00 4.30
2292 2455 1.002366 CGATCTTTTCCGCACAGAGG 58.998 55.000 0.00 0.00 0.00 3.69
2293 2456 1.996292 TCGATCTTTTCCGCACAGAG 58.004 50.000 0.00 0.00 0.00 3.35
2294 2457 2.029380 TCTTCGATCTTTTCCGCACAGA 60.029 45.455 0.00 0.00 0.00 3.41
2295 2458 2.337583 TCTTCGATCTTTTCCGCACAG 58.662 47.619 0.00 0.00 0.00 3.66
2296 2459 2.448926 TCTTCGATCTTTTCCGCACA 57.551 45.000 0.00 0.00 0.00 4.57
2297 2460 2.030946 CCATCTTCGATCTTTTCCGCAC 59.969 50.000 0.00 0.00 0.00 5.34
2298 2461 2.093711 TCCATCTTCGATCTTTTCCGCA 60.094 45.455 0.00 0.00 0.00 5.69
2299 2462 2.541762 CTCCATCTTCGATCTTTTCCGC 59.458 50.000 0.00 0.00 0.00 5.54
2300 2463 3.786635 ACTCCATCTTCGATCTTTTCCG 58.213 45.455 0.00 0.00 0.00 4.30
2301 2464 5.065346 GGAAACTCCATCTTCGATCTTTTCC 59.935 44.000 0.00 0.00 36.28 3.13
2302 2465 5.643777 TGGAAACTCCATCTTCGATCTTTTC 59.356 40.000 0.00 0.00 42.67 2.29
2303 2466 5.560724 TGGAAACTCCATCTTCGATCTTTT 58.439 37.500 0.00 0.00 42.67 2.27
2304 2467 5.165961 TGGAAACTCCATCTTCGATCTTT 57.834 39.130 0.00 0.00 42.67 2.52
2305 2468 4.826274 TGGAAACTCCATCTTCGATCTT 57.174 40.909 0.00 0.00 42.67 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.