Multiple sequence alignment - TraesCS1B01G378300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G378300 chr1B 100.000 2462 0 0 1 2462 610557427 610559888 0.000000e+00 4547
1 TraesCS1B01G378300 chr1B 93.198 691 44 2 817 1507 620899929 620900616 0.000000e+00 1013
2 TraesCS1B01G378300 chr1B 89.273 811 72 14 817 1618 621272363 621271559 0.000000e+00 1002
3 TraesCS1B01G378300 chr1B 88.998 818 66 17 820 1616 620785975 620786789 0.000000e+00 990
4 TraesCS1B01G378300 chr1B 89.872 780 51 16 820 1584 621059167 621059933 0.000000e+00 977
5 TraesCS1B01G378300 chr1B 96.518 517 18 0 991 1507 620551663 620552179 0.000000e+00 856
6 TraesCS1B01G378300 chr1B 81.315 578 52 29 1507 2080 77945127 77945652 3.790000e-113 418
7 TraesCS1B01G378300 chr1D 92.136 1475 63 16 702 2147 446434520 446435970 0.000000e+00 2032
8 TraesCS1B01G378300 chr1D 88.000 825 67 18 820 1615 451624990 451625811 0.000000e+00 946
9 TraesCS1B01G378300 chr1D 85.977 599 31 21 77 661 446433961 446434520 2.110000e-165 592
10 TraesCS1B01G378300 chr1D 90.541 148 6 1 2203 2350 446435989 446436128 3.230000e-44 189
11 TraesCS1B01G378300 chr1A 86.591 1141 62 36 890 1982 542167879 542168976 0.000000e+00 1175
12 TraesCS1B01G378300 chr1A 89.890 821 54 16 820 1615 546216297 546217113 0.000000e+00 1029
13 TraesCS1B01G378300 chr1A 84.236 831 63 18 77 891 542166855 542167633 0.000000e+00 747
14 TraesCS1B01G378300 chr1A 94.872 78 4 0 2273 2350 542169155 542169232 3.320000e-24 122
15 TraesCS1B01G378300 chr7A 81.530 693 61 35 1507 2185 140676176 140676815 2.180000e-140 508
16 TraesCS1B01G378300 chr7A 81.007 695 61 29 1507 2185 3098420 3097781 1.020000e-133 486
17 TraesCS1B01G378300 chr7A 81.587 630 53 31 1507 2130 154056109 154056681 1.720000e-126 462
18 TraesCS1B01G378300 chr5B 82.009 667 55 24 1525 2180 406160570 406159958 7.860000e-140 507
19 TraesCS1B01G378300 chr3B 82.083 653 53 23 1543 2185 7638053 7637455 1.310000e-137 499
20 TraesCS1B01G378300 chr3B 86.323 446 30 10 1731 2166 137289645 137290069 8.020000e-125 457
21 TraesCS1B01G378300 chr3B 84.892 139 15 4 1507 1640 137289475 137289612 4.270000e-28 135
22 TraesCS1B01G378300 chr6B 86.161 448 31 10 1729 2166 264493676 264494102 2.890000e-124 455
23 TraesCS1B01G378300 chr6B 87.848 395 27 10 1732 2126 623536814 623537187 6.250000e-121 444
24 TraesCS1B01G378300 chr6B 86.872 358 26 6 1729 2086 39921863 39922199 4.970000e-102 381
25 TraesCS1B01G378300 chr6B 88.983 118 10 3 1525 1640 264493529 264493645 2.550000e-30 143
26 TraesCS1B01G378300 chr4B 86.161 448 31 10 1729 2166 70830088 70829662 2.890000e-124 455
27 TraesCS1B01G378300 chr4B 86.230 443 31 9 1729 2162 81979239 81978818 1.040000e-123 453
28 TraesCS1B01G378300 chr4B 87.688 398 28 7 1729 2126 172578136 172578512 6.250000e-121 444
29 TraesCS1B01G378300 chr4B 80.272 588 58 23 1507 2089 47069830 47069296 8.250000e-105 390
30 TraesCS1B01G378300 chr4B 86.331 139 13 4 1507 1640 81979407 81979270 1.970000e-31 147
31 TraesCS1B01G378300 chr2B 85.938 448 32 10 1729 2166 555150598 555150172 1.340000e-122 449
32 TraesCS1B01G378300 chr2B 81.293 588 52 25 1507 2089 115843077 115842543 8.140000e-115 424
33 TraesCS1B01G378300 chr2B 81.752 548 46 22 1543 2089 47867598 47867104 2.280000e-110 409
34 TraesCS1B01G378300 chr2B 86.331 139 13 4 1507 1640 555150766 555150629 1.970000e-31 147
35 TraesCS1B01G378300 chr2B 85.612 139 14 4 1507 1640 277462874 277462737 9.180000e-30 141
36 TraesCS1B01G378300 chr7B 87.535 361 24 7 1729 2089 325184606 325184267 4.930000e-107 398
37 TraesCS1B01G378300 chr7B 84.892 139 15 4 1507 1640 1804365 1804502 4.270000e-28 135
38 TraesCS1B01G378300 chr4A 80.216 278 43 10 1521 1792 154534212 154533941 5.370000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G378300 chr1B 610557427 610559888 2461 False 4547.000000 4547 100.000000 1 2462 1 chr1B.!!$F2 2461
1 TraesCS1B01G378300 chr1B 620899929 620900616 687 False 1013.000000 1013 93.198000 817 1507 1 chr1B.!!$F5 690
2 TraesCS1B01G378300 chr1B 621271559 621272363 804 True 1002.000000 1002 89.273000 817 1618 1 chr1B.!!$R1 801
3 TraesCS1B01G378300 chr1B 620785975 620786789 814 False 990.000000 990 88.998000 820 1616 1 chr1B.!!$F4 796
4 TraesCS1B01G378300 chr1B 621059167 621059933 766 False 977.000000 977 89.872000 820 1584 1 chr1B.!!$F6 764
5 TraesCS1B01G378300 chr1B 620551663 620552179 516 False 856.000000 856 96.518000 991 1507 1 chr1B.!!$F3 516
6 TraesCS1B01G378300 chr1B 77945127 77945652 525 False 418.000000 418 81.315000 1507 2080 1 chr1B.!!$F1 573
7 TraesCS1B01G378300 chr1D 451624990 451625811 821 False 946.000000 946 88.000000 820 1615 1 chr1D.!!$F1 795
8 TraesCS1B01G378300 chr1D 446433961 446436128 2167 False 937.666667 2032 89.551333 77 2350 3 chr1D.!!$F2 2273
9 TraesCS1B01G378300 chr1A 546216297 546217113 816 False 1029.000000 1029 89.890000 820 1615 1 chr1A.!!$F1 795
10 TraesCS1B01G378300 chr1A 542166855 542169232 2377 False 681.333333 1175 88.566333 77 2350 3 chr1A.!!$F2 2273
11 TraesCS1B01G378300 chr7A 140676176 140676815 639 False 508.000000 508 81.530000 1507 2185 1 chr7A.!!$F1 678
12 TraesCS1B01G378300 chr7A 3097781 3098420 639 True 486.000000 486 81.007000 1507 2185 1 chr7A.!!$R1 678
13 TraesCS1B01G378300 chr7A 154056109 154056681 572 False 462.000000 462 81.587000 1507 2130 1 chr7A.!!$F2 623
14 TraesCS1B01G378300 chr5B 406159958 406160570 612 True 507.000000 507 82.009000 1525 2180 1 chr5B.!!$R1 655
15 TraesCS1B01G378300 chr3B 7637455 7638053 598 True 499.000000 499 82.083000 1543 2185 1 chr3B.!!$R1 642
16 TraesCS1B01G378300 chr3B 137289475 137290069 594 False 296.000000 457 85.607500 1507 2166 2 chr3B.!!$F1 659
17 TraesCS1B01G378300 chr6B 264493529 264494102 573 False 299.000000 455 87.572000 1525 2166 2 chr6B.!!$F3 641
18 TraesCS1B01G378300 chr4B 47069296 47069830 534 True 390.000000 390 80.272000 1507 2089 1 chr4B.!!$R1 582
19 TraesCS1B01G378300 chr4B 81978818 81979407 589 True 300.000000 453 86.280500 1507 2162 2 chr4B.!!$R3 655
20 TraesCS1B01G378300 chr2B 115842543 115843077 534 True 424.000000 424 81.293000 1507 2089 1 chr2B.!!$R2 582
21 TraesCS1B01G378300 chr2B 555150172 555150766 594 True 298.000000 449 86.134500 1507 2166 2 chr2B.!!$R4 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.032515 TAGGAGCGATGGGGTCTGAA 60.033 55.0 0.0 0.0 42.8 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 2111 0.246635 AACCAGCAGCGGTACTACTG 59.753 55.0 9.02 10.26 38.76 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.430765 ACAACGGCGGTAGGAGCG 62.431 66.667 13.24 0.00 42.73 5.03
18 19 4.124351 CAACGGCGGTAGGAGCGA 62.124 66.667 13.24 0.00 42.41 4.93
19 20 3.145551 AACGGCGGTAGGAGCGAT 61.146 61.111 13.24 0.00 42.41 4.58
20 21 3.426117 AACGGCGGTAGGAGCGATG 62.426 63.158 13.24 0.00 42.41 3.84
21 22 4.647615 CGGCGGTAGGAGCGATGG 62.648 72.222 0.00 0.00 42.41 3.51
22 23 4.301027 GGCGGTAGGAGCGATGGG 62.301 72.222 1.70 0.00 42.41 4.00
23 24 4.301027 GCGGTAGGAGCGATGGGG 62.301 72.222 1.70 0.00 42.41 4.96
24 25 2.838225 CGGTAGGAGCGATGGGGT 60.838 66.667 0.00 0.00 42.41 4.95
25 26 2.857744 CGGTAGGAGCGATGGGGTC 61.858 68.421 0.00 0.00 42.41 4.46
26 27 1.457831 GGTAGGAGCGATGGGGTCT 60.458 63.158 0.00 0.00 42.80 3.85
27 28 1.742768 GTAGGAGCGATGGGGTCTG 59.257 63.158 0.00 0.00 42.80 3.51
28 29 0.755698 GTAGGAGCGATGGGGTCTGA 60.756 60.000 0.00 0.00 42.80 3.27
29 30 0.032515 TAGGAGCGATGGGGTCTGAA 60.033 55.000 0.00 0.00 42.80 3.02
30 31 1.144936 GGAGCGATGGGGTCTGAAG 59.855 63.158 0.00 0.00 42.80 3.02
31 32 1.144936 GAGCGATGGGGTCTGAAGG 59.855 63.158 0.00 0.00 40.05 3.46
32 33 1.306141 AGCGATGGGGTCTGAAGGA 60.306 57.895 0.00 0.00 0.00 3.36
33 34 1.144936 GCGATGGGGTCTGAAGGAG 59.855 63.158 0.00 0.00 0.00 3.69
34 35 1.826024 CGATGGGGTCTGAAGGAGG 59.174 63.158 0.00 0.00 0.00 4.30
35 36 0.978146 CGATGGGGTCTGAAGGAGGT 60.978 60.000 0.00 0.00 0.00 3.85
36 37 0.833949 GATGGGGTCTGAAGGAGGTC 59.166 60.000 0.00 0.00 0.00 3.85
37 38 0.419459 ATGGGGTCTGAAGGAGGTCT 59.581 55.000 0.00 0.00 0.00 3.85
38 39 0.545309 TGGGGTCTGAAGGAGGTCTG 60.545 60.000 0.00 0.00 0.00 3.51
39 40 0.545548 GGGGTCTGAAGGAGGTCTGT 60.546 60.000 0.00 0.00 0.00 3.41
40 41 1.273098 GGGGTCTGAAGGAGGTCTGTA 60.273 57.143 0.00 0.00 0.00 2.74
41 42 2.104170 GGGTCTGAAGGAGGTCTGTAG 58.896 57.143 0.00 0.00 0.00 2.74
42 43 2.104170 GGTCTGAAGGAGGTCTGTAGG 58.896 57.143 0.00 0.00 0.00 3.18
43 44 2.291670 GGTCTGAAGGAGGTCTGTAGGA 60.292 54.545 0.00 0.00 0.00 2.94
44 45 3.020984 GTCTGAAGGAGGTCTGTAGGAG 58.979 54.545 0.00 0.00 0.00 3.69
45 46 1.754226 CTGAAGGAGGTCTGTAGGAGC 59.246 57.143 0.00 0.00 42.26 4.70
46 47 0.741915 GAAGGAGGTCTGTAGGAGCG 59.258 60.000 0.00 0.00 46.05 5.03
47 48 0.331954 AAGGAGGTCTGTAGGAGCGA 59.668 55.000 0.00 0.00 46.05 4.93
48 49 0.553819 AGGAGGTCTGTAGGAGCGAT 59.446 55.000 0.00 0.00 46.05 4.58
49 50 0.671251 GGAGGTCTGTAGGAGCGATG 59.329 60.000 0.00 0.00 46.05 3.84
50 51 0.671251 GAGGTCTGTAGGAGCGATGG 59.329 60.000 0.00 0.00 46.05 3.51
51 52 0.757188 AGGTCTGTAGGAGCGATGGG 60.757 60.000 0.00 0.00 46.05 4.00
52 53 1.742768 GTCTGTAGGAGCGATGGGG 59.257 63.158 0.00 0.00 0.00 4.96
53 54 1.043673 GTCTGTAGGAGCGATGGGGT 61.044 60.000 0.00 0.00 0.00 4.95
54 55 0.554305 TCTGTAGGAGCGATGGGGTA 59.446 55.000 0.00 0.00 0.00 3.69
55 56 0.674534 CTGTAGGAGCGATGGGGTAC 59.325 60.000 0.00 0.00 0.00 3.34
56 57 1.105167 TGTAGGAGCGATGGGGTACG 61.105 60.000 0.00 0.00 30.08 3.67
57 58 0.820891 GTAGGAGCGATGGGGTACGA 60.821 60.000 0.00 0.00 30.08 3.43
58 59 0.820891 TAGGAGCGATGGGGTACGAC 60.821 60.000 0.00 0.00 30.08 4.34
59 60 2.420568 GGAGCGATGGGGTACGACA 61.421 63.158 0.00 0.00 0.00 4.35
60 61 1.065928 GAGCGATGGGGTACGACAG 59.934 63.158 0.00 0.00 0.00 3.51
61 62 2.585247 GCGATGGGGTACGACAGC 60.585 66.667 0.00 0.00 0.00 4.40
62 63 2.278596 CGATGGGGTACGACAGCG 60.279 66.667 10.79 10.79 39.05 5.18
63 64 2.585247 GATGGGGTACGACAGCGC 60.585 66.667 0.00 0.00 42.48 5.92
65 66 3.617735 TGGGGTACGACAGCGCAA 61.618 61.111 11.47 0.00 43.72 4.85
66 67 2.357760 GGGGTACGACAGCGCAAA 60.358 61.111 11.47 0.00 42.48 3.68
67 68 2.674084 GGGGTACGACAGCGCAAAC 61.674 63.158 11.47 0.00 42.48 2.93
68 69 1.957186 GGGTACGACAGCGCAAACA 60.957 57.895 11.47 0.00 42.48 2.83
69 70 1.203313 GGTACGACAGCGCAAACAC 59.797 57.895 11.47 0.00 42.48 3.32
70 71 1.492319 GGTACGACAGCGCAAACACA 61.492 55.000 11.47 0.00 42.48 3.72
71 72 0.302288 GTACGACAGCGCAAACACAA 59.698 50.000 11.47 0.00 42.48 3.33
72 73 0.302288 TACGACAGCGCAAACACAAC 59.698 50.000 11.47 0.00 42.48 3.32
73 74 1.998257 CGACAGCGCAAACACAACG 60.998 57.895 11.47 0.00 0.00 4.10
74 75 1.654137 GACAGCGCAAACACAACGG 60.654 57.895 11.47 0.00 0.00 4.44
75 76 3.024043 CAGCGCAAACACAACGGC 61.024 61.111 11.47 0.00 0.00 5.68
116 117 1.444119 TTGCCTCGTGTTGCAACTCC 61.444 55.000 28.61 18.16 42.19 3.85
179 189 9.920946 TTATACCTAGCTCAAATTTTGAATCCT 57.079 29.630 12.62 11.02 39.58 3.24
222 232 1.856597 CCGCTCGGTATTTTTCGGTAG 59.143 52.381 0.00 0.00 32.93 3.18
224 234 2.273557 GCTCGGTATTTTTCGGTAGCA 58.726 47.619 0.00 0.00 0.00 3.49
234 244 0.742990 TTCGGTAGCAGCATTTCCCG 60.743 55.000 0.00 0.00 36.83 5.14
280 296 7.833285 TTAGGATTCAGTAGCCAAAAACTTT 57.167 32.000 0.00 0.00 0.00 2.66
302 318 1.202121 GGTCGTAGTACTTCTCGTGCC 60.202 57.143 0.00 7.76 0.00 5.01
468 493 7.404671 AAGCTTGTTCTTGACCTTAAAAAGA 57.595 32.000 0.00 0.00 0.00 2.52
469 494 7.032377 AGCTTGTTCTTGACCTTAAAAAGAG 57.968 36.000 0.00 0.00 31.89 2.85
470 495 6.828785 AGCTTGTTCTTGACCTTAAAAAGAGA 59.171 34.615 0.00 0.00 31.89 3.10
485 510 0.757188 AGAGACTGCCCGTCCTATGG 60.757 60.000 0.14 0.00 43.91 2.74
504 529 3.334691 TGGCTACATTCCTCAAGAAACG 58.665 45.455 0.00 0.00 38.21 3.60
525 550 1.783365 AGGAGGCTTCACCCTTTTCTT 59.217 47.619 0.00 0.00 40.58 2.52
526 551 2.986728 AGGAGGCTTCACCCTTTTCTTA 59.013 45.455 0.00 0.00 40.58 2.10
527 552 3.009584 AGGAGGCTTCACCCTTTTCTTAG 59.990 47.826 0.00 0.00 40.58 2.18
533 558 6.040955 AGGCTTCACCCTTTTCTTAGAAAAAG 59.959 38.462 18.97 13.75 43.02 2.27
534 559 6.040504 GGCTTCACCCTTTTCTTAGAAAAAGA 59.959 38.462 18.97 12.34 45.12 2.52
535 560 7.142021 GCTTCACCCTTTTCTTAGAAAAAGAG 58.858 38.462 18.97 13.18 45.12 2.85
536 561 7.582667 TTCACCCTTTTCTTAGAAAAAGAGG 57.417 36.000 18.97 19.65 45.12 3.69
537 562 6.906848 TCACCCTTTTCTTAGAAAAAGAGGA 58.093 36.000 24.88 16.48 45.12 3.71
592 623 9.840427 GAACAAAAATGCTTGTACATATACAGT 57.160 29.630 0.00 0.00 42.29 3.55
608 639 9.443365 ACATATACAGTATAGTTTTGGGGTACT 57.557 33.333 6.45 0.00 0.00 2.73
611 642 6.803366 ACAGTATAGTTTTGGGGTACTAGG 57.197 41.667 0.00 0.00 30.95 3.02
612 643 6.505754 ACAGTATAGTTTTGGGGTACTAGGA 58.494 40.000 0.00 0.00 30.95 2.94
613 644 6.961721 ACAGTATAGTTTTGGGGTACTAGGAA 59.038 38.462 0.00 0.00 30.95 3.36
614 645 7.458806 ACAGTATAGTTTTGGGGTACTAGGAAA 59.541 37.037 0.00 0.00 30.95 3.13
615 646 8.491958 CAGTATAGTTTTGGGGTACTAGGAAAT 58.508 37.037 0.00 0.00 30.95 2.17
616 647 9.733907 AGTATAGTTTTGGGGTACTAGGAAATA 57.266 33.333 0.00 0.00 30.95 1.40
617 648 9.770097 GTATAGTTTTGGGGTACTAGGAAATAC 57.230 37.037 0.00 0.00 30.95 1.89
618 649 6.964876 AGTTTTGGGGTACTAGGAAATACT 57.035 37.500 0.00 0.00 0.00 2.12
619 650 6.955364 AGTTTTGGGGTACTAGGAAATACTC 58.045 40.000 0.00 0.00 0.00 2.59
620 651 5.963214 TTTGGGGTACTAGGAAATACTCC 57.037 43.478 1.02 1.02 45.81 3.85
643 674 8.039603 TCCAGTACAACAAAGCAAATATACTG 57.960 34.615 0.00 0.00 38.54 2.74
651 682 7.656707 ACAAAGCAAATATACTGGCAAAAAG 57.343 32.000 0.00 0.00 0.00 2.27
661 692 3.949132 ACTGGCAAAAAGGAAAAGCAAA 58.051 36.364 0.00 0.00 0.00 3.68
662 693 4.525996 ACTGGCAAAAAGGAAAAGCAAAT 58.474 34.783 0.00 0.00 0.00 2.32
663 694 5.679601 ACTGGCAAAAAGGAAAAGCAAATA 58.320 33.333 0.00 0.00 0.00 1.40
664 695 5.527214 ACTGGCAAAAAGGAAAAGCAAATAC 59.473 36.000 0.00 0.00 0.00 1.89
665 696 5.431765 TGGCAAAAAGGAAAAGCAAATACA 58.568 33.333 0.00 0.00 0.00 2.29
666 697 5.295540 TGGCAAAAAGGAAAAGCAAATACAC 59.704 36.000 0.00 0.00 0.00 2.90
667 698 5.527214 GGCAAAAAGGAAAAGCAAATACACT 59.473 36.000 0.00 0.00 0.00 3.55
668 699 6.292865 GGCAAAAAGGAAAAGCAAATACACTC 60.293 38.462 0.00 0.00 0.00 3.51
669 700 6.562086 GCAAAAAGGAAAAGCAAATACACTCG 60.562 38.462 0.00 0.00 0.00 4.18
670 701 3.831715 AGGAAAAGCAAATACACTCGC 57.168 42.857 0.00 0.00 0.00 5.03
671 702 3.146066 AGGAAAAGCAAATACACTCGCA 58.854 40.909 0.00 0.00 0.00 5.10
672 703 3.568007 AGGAAAAGCAAATACACTCGCAA 59.432 39.130 0.00 0.00 0.00 4.85
673 704 4.037446 AGGAAAAGCAAATACACTCGCAAA 59.963 37.500 0.00 0.00 0.00 3.68
674 705 4.742659 GGAAAAGCAAATACACTCGCAAAA 59.257 37.500 0.00 0.00 0.00 2.44
675 706 5.233263 GGAAAAGCAAATACACTCGCAAAAA 59.767 36.000 0.00 0.00 0.00 1.94
716 747 1.210931 CACATGCCGCCTTGTTCTG 59.789 57.895 0.00 0.00 0.00 3.02
788 819 1.606903 ATACGGTCGAGATCTGTCCC 58.393 55.000 0.00 0.00 0.00 4.46
789 820 0.253894 TACGGTCGAGATCTGTCCCA 59.746 55.000 0.00 0.00 0.00 4.37
794 825 1.064946 CGAGATCTGTCCCACGAGC 59.935 63.158 0.00 0.00 0.00 5.03
802 833 1.376037 GTCCCACGAGCCAAAGAGG 60.376 63.158 0.00 0.00 41.84 3.69
828 859 1.664321 ATCCTACCGCTCCACGTCAC 61.664 60.000 0.00 0.00 41.42 3.67
957 1241 2.251600 GCCTCCAGCAAACTCACAG 58.748 57.895 0.00 0.00 42.97 3.66
1054 1338 0.038526 GAACAAGGTCGAGAAGGCGA 60.039 55.000 0.00 0.00 38.07 5.54
1326 1610 4.785453 GGGGAGTCCGCCAAGCTG 62.785 72.222 15.31 0.00 44.17 4.24
1647 2021 4.669318 CGGTTGTGGTACTACTACATCTG 58.331 47.826 21.41 7.09 39.34 2.90
1650 2024 5.184479 GGTTGTGGTACTACTACATCTGTGA 59.816 44.000 21.41 0.00 39.34 3.58
1653 2027 5.414765 TGTGGTACTACTACATCTGTGACAG 59.585 44.000 6.18 6.18 34.57 3.51
1654 2028 5.415077 GTGGTACTACTACATCTGTGACAGT 59.585 44.000 12.93 0.00 29.64 3.55
1736 2111 4.448395 TGCATTTGTGTTTTATCTGCAAGC 59.552 37.500 0.00 0.00 35.42 4.01
1743 2118 6.227522 TGTGTTTTATCTGCAAGCAGTAGTA 58.772 36.000 20.34 10.24 43.96 1.82
1746 2121 2.586258 ATCTGCAAGCAGTAGTACCG 57.414 50.000 20.34 0.00 43.96 4.02
1757 2132 0.531200 GTAGTACCGCTGCTGGTTCT 59.469 55.000 18.37 19.17 43.56 3.01
1794 2169 5.277634 GCTTGCTGAATCTTGTTTTGCAAAT 60.278 36.000 13.65 0.00 38.25 2.32
1821 2196 6.002704 AGATGGGATTTAGAGTGATGCATTC 58.997 40.000 0.00 0.00 0.00 2.67
1838 2213 3.466836 CATTCCCGCTGCTAGTGATTAA 58.533 45.455 0.00 0.00 0.00 1.40
1902 2278 5.643777 ACTAATCTCTGCCATGTGTTTGTAC 59.356 40.000 0.00 0.00 0.00 2.90
1903 2279 3.769739 TCTCTGCCATGTGTTTGTACT 57.230 42.857 0.00 0.00 0.00 2.73
1904 2280 4.085357 TCTCTGCCATGTGTTTGTACTT 57.915 40.909 0.00 0.00 0.00 2.24
1905 2281 4.460263 TCTCTGCCATGTGTTTGTACTTT 58.540 39.130 0.00 0.00 0.00 2.66
1906 2282 4.275689 TCTCTGCCATGTGTTTGTACTTTG 59.724 41.667 0.00 0.00 0.00 2.77
1907 2283 3.951037 TCTGCCATGTGTTTGTACTTTGT 59.049 39.130 0.00 0.00 0.00 2.83
1908 2284 5.126779 TCTGCCATGTGTTTGTACTTTGTA 58.873 37.500 0.00 0.00 0.00 2.41
1980 2356 4.685169 AACTGAACGCATCTATGTTTGG 57.315 40.909 0.00 0.00 0.00 3.28
1985 2361 2.378038 ACGCATCTATGTTTGGCCATT 58.622 42.857 6.09 0.00 0.00 3.16
1993 2369 7.642669 CATCTATGTTTGGCCATTTGTACTAG 58.357 38.462 6.09 2.16 0.00 2.57
1994 2370 6.717289 TCTATGTTTGGCCATTTGTACTAGT 58.283 36.000 6.09 0.00 0.00 2.57
1995 2371 7.853299 TCTATGTTTGGCCATTTGTACTAGTA 58.147 34.615 6.09 0.00 0.00 1.82
1996 2372 8.491134 TCTATGTTTGGCCATTTGTACTAGTAT 58.509 33.333 6.09 0.00 0.00 2.12
2003 2379 9.555727 TTGGCCATTTGTACTAGTATATCTTTC 57.444 33.333 6.09 0.00 0.00 2.62
2021 2397 1.953559 TCTGAACTGAACACTGCCAC 58.046 50.000 0.00 0.00 0.00 5.01
2117 2537 1.820519 GAGTGGAAATTGCTGCATGGA 59.179 47.619 1.84 0.00 0.00 3.41
2137 2566 0.030369 GCTGCAACCTGCTGATATGC 59.970 55.000 9.40 7.80 45.31 3.14
2185 2615 4.128925 TGCTAGCGATTTCTTCTGTGAT 57.871 40.909 10.77 0.00 0.00 3.06
2186 2616 3.867493 TGCTAGCGATTTCTTCTGTGATG 59.133 43.478 10.77 0.00 0.00 3.07
2187 2617 3.303001 GCTAGCGATTTCTTCTGTGATGC 60.303 47.826 0.00 0.00 0.00 3.91
2189 2619 3.076621 AGCGATTTCTTCTGTGATGCAA 58.923 40.909 0.00 0.00 0.00 4.08
2190 2620 3.693085 AGCGATTTCTTCTGTGATGCAAT 59.307 39.130 0.00 0.00 0.00 3.56
2191 2621 4.157289 AGCGATTTCTTCTGTGATGCAATT 59.843 37.500 0.00 0.00 0.00 2.32
2201 2631 3.482722 GTGATGCAATTCACACAGAGG 57.517 47.619 14.23 0.00 44.38 3.69
2211 2641 4.901197 TTCACACAGAGGGCTTGTAATA 57.099 40.909 0.00 0.00 0.00 0.98
2217 2647 4.818546 CACAGAGGGCTTGTAATAATCTGG 59.181 45.833 0.00 0.00 37.58 3.86
2232 2662 1.731613 CTGGCATGTGTTTGCGCTG 60.732 57.895 9.73 0.00 43.71 5.18
2233 2663 2.336088 GGCATGTGTTTGCGCTGT 59.664 55.556 9.73 0.00 43.71 4.40
2234 2664 2.017783 GGCATGTGTTTGCGCTGTG 61.018 57.895 9.73 0.00 43.71 3.66
2235 2665 2.651137 GCATGTGTTTGCGCTGTGC 61.651 57.895 9.73 6.19 46.70 4.57
2236 2666 2.017783 CATGTGTTTGCGCTGTGCC 61.018 57.895 9.73 0.00 45.60 5.01
2237 2667 3.541093 ATGTGTTTGCGCTGTGCCG 62.541 57.895 9.73 0.00 45.60 5.69
2284 2714 4.393371 TCAATTTCCGCGTGTGATTATCAA 59.607 37.500 4.92 0.00 0.00 2.57
2297 2727 6.687105 GTGTGATTATCAATAACGTTTGCCTC 59.313 38.462 5.91 0.00 0.00 4.70
2350 2780 6.986231 CCAATAGTATATCAGTCAGTTGTGCA 59.014 38.462 0.00 0.00 0.00 4.57
2351 2781 7.042456 CCAATAGTATATCAGTCAGTTGTGCAC 60.042 40.741 10.75 10.75 0.00 4.57
2352 2782 5.405935 AGTATATCAGTCAGTTGTGCACA 57.594 39.130 17.42 17.42 0.00 4.57
2353 2783 5.982356 AGTATATCAGTCAGTTGTGCACAT 58.018 37.500 22.39 3.15 0.00 3.21
2354 2784 7.112452 AGTATATCAGTCAGTTGTGCACATA 57.888 36.000 22.39 9.00 0.00 2.29
2355 2785 7.205992 AGTATATCAGTCAGTTGTGCACATAG 58.794 38.462 22.39 13.49 0.00 2.23
2356 2786 3.751479 TCAGTCAGTTGTGCACATAGT 57.249 42.857 22.39 11.56 0.00 2.12
2357 2787 4.864704 TCAGTCAGTTGTGCACATAGTA 57.135 40.909 22.39 1.80 0.00 1.82
2358 2788 5.405935 TCAGTCAGTTGTGCACATAGTAT 57.594 39.130 22.39 2.65 0.00 2.12
2359 2789 5.410924 TCAGTCAGTTGTGCACATAGTATC 58.589 41.667 22.39 9.98 0.00 2.24
2360 2790 5.047377 TCAGTCAGTTGTGCACATAGTATCA 60.047 40.000 22.39 0.00 0.00 2.15
2361 2791 5.290400 CAGTCAGTTGTGCACATAGTATCAG 59.710 44.000 22.39 4.15 0.00 2.90
2362 2792 5.047021 AGTCAGTTGTGCACATAGTATCAGT 60.047 40.000 22.39 3.41 0.00 3.41
2363 2793 5.289675 GTCAGTTGTGCACATAGTATCAGTC 59.710 44.000 22.39 0.71 0.00 3.51
2364 2794 5.047377 TCAGTTGTGCACATAGTATCAGTCA 60.047 40.000 22.39 0.00 0.00 3.41
2365 2795 5.290400 CAGTTGTGCACATAGTATCAGTCAG 59.710 44.000 22.39 0.00 0.00 3.51
2366 2796 5.047021 AGTTGTGCACATAGTATCAGTCAGT 60.047 40.000 22.39 0.40 0.00 3.41
2367 2797 5.405935 TGTGCACATAGTATCAGTCAGTT 57.594 39.130 17.42 0.00 0.00 3.16
2368 2798 5.170748 TGTGCACATAGTATCAGTCAGTTG 58.829 41.667 17.42 0.00 0.00 3.16
2369 2799 5.171476 GTGCACATAGTATCAGTCAGTTGT 58.829 41.667 13.17 0.00 0.00 3.32
2370 2800 5.062683 GTGCACATAGTATCAGTCAGTTGTG 59.937 44.000 13.17 0.00 37.02 3.33
2371 2801 5.171476 GCACATAGTATCAGTCAGTTGTGT 58.829 41.667 0.00 0.00 36.49 3.72
2372 2802 6.071616 TGCACATAGTATCAGTCAGTTGTGTA 60.072 38.462 0.00 0.00 36.49 2.90
2373 2803 6.473778 GCACATAGTATCAGTCAGTTGTGTAG 59.526 42.308 0.00 0.00 36.49 2.74
2374 2804 6.473778 CACATAGTATCAGTCAGTTGTGTAGC 59.526 42.308 0.00 0.00 0.00 3.58
2375 2805 6.152831 ACATAGTATCAGTCAGTTGTGTAGCA 59.847 38.462 0.00 0.00 0.00 3.49
2376 2806 5.667539 AGTATCAGTCAGTTGTGTAGCAT 57.332 39.130 0.00 0.00 0.00 3.79
2377 2807 5.414360 AGTATCAGTCAGTTGTGTAGCATG 58.586 41.667 0.00 0.00 0.00 4.06
2378 2808 3.044235 TCAGTCAGTTGTGTAGCATGG 57.956 47.619 0.00 0.00 0.00 3.66
2379 2809 2.632512 TCAGTCAGTTGTGTAGCATGGA 59.367 45.455 0.00 0.00 0.00 3.41
2380 2810 2.998670 CAGTCAGTTGTGTAGCATGGAG 59.001 50.000 0.00 0.00 0.00 3.86
2381 2811 2.634940 AGTCAGTTGTGTAGCATGGAGT 59.365 45.455 0.00 0.00 0.00 3.85
2382 2812 3.832490 AGTCAGTTGTGTAGCATGGAGTA 59.168 43.478 0.00 0.00 0.00 2.59
2383 2813 4.081972 AGTCAGTTGTGTAGCATGGAGTAG 60.082 45.833 0.00 0.00 0.00 2.57
2384 2814 3.195610 TCAGTTGTGTAGCATGGAGTAGG 59.804 47.826 0.00 0.00 0.00 3.18
2385 2815 3.055819 CAGTTGTGTAGCATGGAGTAGGT 60.056 47.826 0.00 0.00 0.00 3.08
2386 2816 3.583086 AGTTGTGTAGCATGGAGTAGGTT 59.417 43.478 0.00 0.00 0.00 3.50
2387 2817 3.887621 TGTGTAGCATGGAGTAGGTTC 57.112 47.619 0.00 0.00 0.00 3.62
2388 2818 3.169908 TGTGTAGCATGGAGTAGGTTCA 58.830 45.455 0.00 0.00 0.00 3.18
2389 2819 3.195610 TGTGTAGCATGGAGTAGGTTCAG 59.804 47.826 0.00 0.00 0.00 3.02
2390 2820 3.447586 GTGTAGCATGGAGTAGGTTCAGA 59.552 47.826 0.00 0.00 0.00 3.27
2391 2821 3.447586 TGTAGCATGGAGTAGGTTCAGAC 59.552 47.826 0.00 0.00 0.00 3.51
2392 2822 2.826488 AGCATGGAGTAGGTTCAGACT 58.174 47.619 0.00 0.00 0.00 3.24
2393 2823 3.177228 AGCATGGAGTAGGTTCAGACTT 58.823 45.455 0.00 0.00 0.00 3.01
2394 2824 3.055530 AGCATGGAGTAGGTTCAGACTTG 60.056 47.826 0.00 0.00 0.00 3.16
2395 2825 3.265791 CATGGAGTAGGTTCAGACTTGC 58.734 50.000 0.00 0.00 0.00 4.01
2396 2826 1.623811 TGGAGTAGGTTCAGACTTGCC 59.376 52.381 0.00 0.00 0.00 4.52
2397 2827 1.623811 GGAGTAGGTTCAGACTTGCCA 59.376 52.381 0.00 0.00 0.00 4.92
2398 2828 2.038557 GGAGTAGGTTCAGACTTGCCAA 59.961 50.000 0.00 0.00 0.00 4.52
2399 2829 3.496160 GGAGTAGGTTCAGACTTGCCAAA 60.496 47.826 0.00 0.00 0.00 3.28
2400 2830 3.477530 AGTAGGTTCAGACTTGCCAAAC 58.522 45.455 0.00 0.00 0.00 2.93
2401 2831 2.736670 AGGTTCAGACTTGCCAAACT 57.263 45.000 0.00 0.00 0.00 2.66
2402 2832 3.857157 AGGTTCAGACTTGCCAAACTA 57.143 42.857 0.00 0.00 0.00 2.24
2403 2833 4.164843 AGGTTCAGACTTGCCAAACTAA 57.835 40.909 0.00 0.00 0.00 2.24
2404 2834 4.532834 AGGTTCAGACTTGCCAAACTAAA 58.467 39.130 0.00 0.00 0.00 1.85
2405 2835 4.953579 AGGTTCAGACTTGCCAAACTAAAA 59.046 37.500 0.00 0.00 0.00 1.52
2406 2836 5.598417 AGGTTCAGACTTGCCAAACTAAAAT 59.402 36.000 0.00 0.00 0.00 1.82
2407 2837 5.920840 GGTTCAGACTTGCCAAACTAAAATC 59.079 40.000 0.00 0.00 0.00 2.17
2408 2838 6.460953 GGTTCAGACTTGCCAAACTAAAATCA 60.461 38.462 0.00 0.00 0.00 2.57
2409 2839 6.317789 TCAGACTTGCCAAACTAAAATCAG 57.682 37.500 0.00 0.00 0.00 2.90
2410 2840 5.827797 TCAGACTTGCCAAACTAAAATCAGT 59.172 36.000 0.00 0.00 0.00 3.41
2411 2841 6.321181 TCAGACTTGCCAAACTAAAATCAGTT 59.679 34.615 0.00 0.00 40.49 3.16
2421 2851 7.839680 AAACTAAAATCAGTTTGGGATCTGT 57.160 32.000 0.67 0.00 44.92 3.41
2422 2852 6.824305 ACTAAAATCAGTTTGGGATCTGTG 57.176 37.500 0.00 0.00 32.17 3.66
2423 2853 6.542821 ACTAAAATCAGTTTGGGATCTGTGA 58.457 36.000 0.00 0.00 32.17 3.58
2424 2854 7.177878 ACTAAAATCAGTTTGGGATCTGTGAT 58.822 34.615 0.00 0.00 32.17 3.06
2425 2855 6.923199 AAAATCAGTTTGGGATCTGTGATT 57.077 33.333 0.00 0.00 36.44 2.57
2426 2856 5.909621 AATCAGTTTGGGATCTGTGATTG 57.090 39.130 0.00 0.00 34.23 2.67
2427 2857 3.084039 TCAGTTTGGGATCTGTGATTGC 58.916 45.455 0.00 0.00 33.89 3.56
2428 2858 2.165030 CAGTTTGGGATCTGTGATTGCC 59.835 50.000 0.00 0.00 0.00 4.52
2429 2859 2.170166 GTTTGGGATCTGTGATTGCCA 58.830 47.619 0.00 0.00 0.00 4.92
2430 2860 2.562298 GTTTGGGATCTGTGATTGCCAA 59.438 45.455 0.00 0.00 40.97 4.52
2431 2861 2.601240 TGGGATCTGTGATTGCCAAA 57.399 45.000 0.00 0.00 29.55 3.28
2432 2862 2.170166 TGGGATCTGTGATTGCCAAAC 58.830 47.619 0.00 0.00 29.55 2.93
2433 2863 2.225091 TGGGATCTGTGATTGCCAAACT 60.225 45.455 0.00 0.00 29.55 2.66
2434 2864 3.010027 TGGGATCTGTGATTGCCAAACTA 59.990 43.478 0.00 0.00 29.55 2.24
2435 2865 4.016444 GGGATCTGTGATTGCCAAACTAA 58.984 43.478 0.00 0.00 0.00 2.24
2436 2866 4.462483 GGGATCTGTGATTGCCAAACTAAA 59.538 41.667 0.00 0.00 0.00 1.85
2437 2867 5.047377 GGGATCTGTGATTGCCAAACTAAAA 60.047 40.000 0.00 0.00 0.00 1.52
2438 2868 5.863935 GGATCTGTGATTGCCAAACTAAAAC 59.136 40.000 0.00 0.00 0.00 2.43
2439 2869 5.195001 TCTGTGATTGCCAAACTAAAACC 57.805 39.130 0.00 0.00 0.00 3.27
2440 2870 3.971150 TGTGATTGCCAAACTAAAACCG 58.029 40.909 0.00 0.00 0.00 4.44
2441 2871 3.381908 TGTGATTGCCAAACTAAAACCGT 59.618 39.130 0.00 0.00 0.00 4.83
2442 2872 3.733727 GTGATTGCCAAACTAAAACCGTG 59.266 43.478 0.00 0.00 0.00 4.94
2443 2873 2.211353 TTGCCAAACTAAAACCGTGC 57.789 45.000 0.00 0.00 0.00 5.34
2444 2874 1.103803 TGCCAAACTAAAACCGTGCA 58.896 45.000 0.00 0.00 0.00 4.57
2445 2875 1.202313 TGCCAAACTAAAACCGTGCAC 60.202 47.619 6.82 6.82 0.00 4.57
2446 2876 1.749153 CCAAACTAAAACCGTGCACG 58.251 50.000 31.77 31.77 39.44 5.34
2459 2889 2.804856 GCACGGTGCACCTTTGTT 59.195 55.556 32.28 9.46 44.26 2.83
2460 2890 1.140804 GCACGGTGCACCTTTGTTT 59.859 52.632 32.28 7.66 44.26 2.83
2461 2891 0.869880 GCACGGTGCACCTTTGTTTC 60.870 55.000 32.28 13.47 44.26 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.430765 CGCTCCTACCGCCGTTGT 62.431 66.667 0.00 0.00 0.00 3.32
1 2 3.426117 ATCGCTCCTACCGCCGTTG 62.426 63.158 0.00 0.00 0.00 4.10
2 3 3.145551 ATCGCTCCTACCGCCGTT 61.146 61.111 0.00 0.00 0.00 4.44
3 4 3.900892 CATCGCTCCTACCGCCGT 61.901 66.667 0.00 0.00 0.00 5.68
4 5 4.647615 CCATCGCTCCTACCGCCG 62.648 72.222 0.00 0.00 0.00 6.46
5 6 4.301027 CCCATCGCTCCTACCGCC 62.301 72.222 0.00 0.00 0.00 6.13
6 7 4.301027 CCCCATCGCTCCTACCGC 62.301 72.222 0.00 0.00 0.00 5.68
7 8 2.838225 ACCCCATCGCTCCTACCG 60.838 66.667 0.00 0.00 0.00 4.02
8 9 1.457831 AGACCCCATCGCTCCTACC 60.458 63.158 0.00 0.00 0.00 3.18
9 10 0.755698 TCAGACCCCATCGCTCCTAC 60.756 60.000 0.00 0.00 0.00 3.18
10 11 0.032515 TTCAGACCCCATCGCTCCTA 60.033 55.000 0.00 0.00 0.00 2.94
11 12 1.306141 TTCAGACCCCATCGCTCCT 60.306 57.895 0.00 0.00 0.00 3.69
12 13 1.144936 CTTCAGACCCCATCGCTCC 59.855 63.158 0.00 0.00 0.00 4.70
13 14 1.144936 CCTTCAGACCCCATCGCTC 59.855 63.158 0.00 0.00 0.00 5.03
14 15 1.306141 TCCTTCAGACCCCATCGCT 60.306 57.895 0.00 0.00 0.00 4.93
15 16 1.144936 CTCCTTCAGACCCCATCGC 59.855 63.158 0.00 0.00 0.00 4.58
16 17 0.978146 ACCTCCTTCAGACCCCATCG 60.978 60.000 0.00 0.00 0.00 3.84
17 18 0.833949 GACCTCCTTCAGACCCCATC 59.166 60.000 0.00 0.00 0.00 3.51
18 19 0.419459 AGACCTCCTTCAGACCCCAT 59.581 55.000 0.00 0.00 0.00 4.00
19 20 0.545309 CAGACCTCCTTCAGACCCCA 60.545 60.000 0.00 0.00 0.00 4.96
20 21 0.545548 ACAGACCTCCTTCAGACCCC 60.546 60.000 0.00 0.00 0.00 4.95
21 22 2.104170 CTACAGACCTCCTTCAGACCC 58.896 57.143 0.00 0.00 0.00 4.46
22 23 2.104170 CCTACAGACCTCCTTCAGACC 58.896 57.143 0.00 0.00 0.00 3.85
23 24 3.020984 CTCCTACAGACCTCCTTCAGAC 58.979 54.545 0.00 0.00 0.00 3.51
24 25 2.621929 GCTCCTACAGACCTCCTTCAGA 60.622 54.545 0.00 0.00 0.00 3.27
25 26 1.754226 GCTCCTACAGACCTCCTTCAG 59.246 57.143 0.00 0.00 0.00 3.02
26 27 1.853963 GCTCCTACAGACCTCCTTCA 58.146 55.000 0.00 0.00 0.00 3.02
27 28 0.741915 CGCTCCTACAGACCTCCTTC 59.258 60.000 0.00 0.00 0.00 3.46
28 29 0.331954 TCGCTCCTACAGACCTCCTT 59.668 55.000 0.00 0.00 0.00 3.36
29 30 0.553819 ATCGCTCCTACAGACCTCCT 59.446 55.000 0.00 0.00 0.00 3.69
30 31 0.671251 CATCGCTCCTACAGACCTCC 59.329 60.000 0.00 0.00 0.00 4.30
31 32 0.671251 CCATCGCTCCTACAGACCTC 59.329 60.000 0.00 0.00 0.00 3.85
32 33 0.757188 CCCATCGCTCCTACAGACCT 60.757 60.000 0.00 0.00 0.00 3.85
33 34 1.742768 CCCATCGCTCCTACAGACC 59.257 63.158 0.00 0.00 0.00 3.85
34 35 1.043673 ACCCCATCGCTCCTACAGAC 61.044 60.000 0.00 0.00 0.00 3.51
35 36 0.554305 TACCCCATCGCTCCTACAGA 59.446 55.000 0.00 0.00 0.00 3.41
36 37 0.674534 GTACCCCATCGCTCCTACAG 59.325 60.000 0.00 0.00 0.00 2.74
37 38 1.105167 CGTACCCCATCGCTCCTACA 61.105 60.000 0.00 0.00 0.00 2.74
38 39 0.820891 TCGTACCCCATCGCTCCTAC 60.821 60.000 0.00 0.00 0.00 3.18
39 40 0.820891 GTCGTACCCCATCGCTCCTA 60.821 60.000 0.00 0.00 0.00 2.94
40 41 2.125961 GTCGTACCCCATCGCTCCT 61.126 63.158 0.00 0.00 0.00 3.69
41 42 2.351336 CTGTCGTACCCCATCGCTCC 62.351 65.000 0.00 0.00 0.00 4.70
42 43 1.065928 CTGTCGTACCCCATCGCTC 59.934 63.158 0.00 0.00 0.00 5.03
43 44 3.077519 GCTGTCGTACCCCATCGCT 62.078 63.158 0.00 0.00 0.00 4.93
44 45 2.585247 GCTGTCGTACCCCATCGC 60.585 66.667 0.00 0.00 0.00 4.58
45 46 2.278596 CGCTGTCGTACCCCATCG 60.279 66.667 0.00 0.00 0.00 3.84
46 47 2.585247 GCGCTGTCGTACCCCATC 60.585 66.667 0.00 0.00 38.14 3.51
47 48 2.457743 TTTGCGCTGTCGTACCCCAT 62.458 55.000 9.73 0.00 38.14 4.00
48 49 3.166490 TTTGCGCTGTCGTACCCCA 62.166 57.895 9.73 0.00 38.14 4.96
49 50 2.357760 TTTGCGCTGTCGTACCCC 60.358 61.111 9.73 0.00 38.14 4.95
50 51 1.957186 TGTTTGCGCTGTCGTACCC 60.957 57.895 9.73 0.00 38.14 3.69
51 52 1.203313 GTGTTTGCGCTGTCGTACC 59.797 57.895 9.73 0.00 38.14 3.34
52 53 0.302288 TTGTGTTTGCGCTGTCGTAC 59.698 50.000 9.73 0.94 38.14 3.67
53 54 0.302288 GTTGTGTTTGCGCTGTCGTA 59.698 50.000 9.73 0.00 38.14 3.43
54 55 1.061887 GTTGTGTTTGCGCTGTCGT 59.938 52.632 9.73 0.00 38.14 4.34
55 56 1.998257 CGTTGTGTTTGCGCTGTCG 60.998 57.895 9.73 0.00 39.07 4.35
56 57 1.654137 CCGTTGTGTTTGCGCTGTC 60.654 57.895 9.73 0.00 0.00 3.51
57 58 2.407210 CCGTTGTGTTTGCGCTGT 59.593 55.556 9.73 0.00 0.00 4.40
58 59 3.024043 GCCGTTGTGTTTGCGCTG 61.024 61.111 9.73 0.00 0.00 5.18
59 60 4.605967 CGCCGTTGTGTTTGCGCT 62.606 61.111 9.73 0.00 40.58 5.92
61 62 3.743091 AACCGCCGTTGTGTTTGCG 62.743 57.895 0.00 0.00 46.14 4.85
62 63 1.942223 GAACCGCCGTTGTGTTTGC 60.942 57.895 0.00 0.00 30.30 3.68
63 64 0.863957 GTGAACCGCCGTTGTGTTTG 60.864 55.000 0.00 0.00 30.30 2.93
64 65 1.430228 GTGAACCGCCGTTGTGTTT 59.570 52.632 0.00 0.00 30.30 2.83
65 66 2.474612 GGTGAACCGCCGTTGTGTT 61.475 57.895 0.00 0.00 30.30 3.32
66 67 2.898343 GGTGAACCGCCGTTGTGT 60.898 61.111 0.00 0.00 30.30 3.72
67 68 3.656045 GGGTGAACCGCCGTTGTG 61.656 66.667 0.00 0.00 34.37 3.33
68 69 4.941309 GGGGTGAACCGCCGTTGT 62.941 66.667 5.25 0.00 42.54 3.32
75 76 2.672996 CAGGCTTGGGGTGAACCG 60.673 66.667 0.00 0.00 41.60 4.44
116 117 6.908870 TCATTTTAGTGAGGAATGTCATCG 57.091 37.500 0.00 0.00 33.60 3.84
153 154 9.920946 AGGATTCAAAATTTGAGCTAGGTATAA 57.079 29.630 8.51 0.00 41.38 0.98
177 187 8.925700 GGATGCAGTTTAATTCTTTTAAACAGG 58.074 33.333 18.11 12.59 43.58 4.00
179 189 7.115663 GCGGATGCAGTTTAATTCTTTTAAACA 59.884 33.333 18.11 3.96 43.58 2.83
199 209 1.260561 CCGAAAAATACCGAGCGGATG 59.739 52.381 16.83 0.00 41.11 3.51
253 269 8.245195 AGTTTTTGGCTACTGAATCCTAAAAA 57.755 30.769 0.00 0.00 36.74 1.94
254 270 7.833285 AGTTTTTGGCTACTGAATCCTAAAA 57.167 32.000 0.00 0.00 34.15 1.52
255 271 7.833285 AAGTTTTTGGCTACTGAATCCTAAA 57.167 32.000 0.00 0.00 0.00 1.85
265 281 2.621526 CGACCCAAAGTTTTTGGCTACT 59.378 45.455 13.76 0.00 38.23 2.57
276 292 3.190118 CGAGAAGTACTACGACCCAAAGT 59.810 47.826 0.00 0.00 0.00 2.66
280 296 2.079158 CACGAGAAGTACTACGACCCA 58.921 52.381 18.82 0.00 0.00 4.51
302 318 2.320587 GGAGCTCAACCACACAGCG 61.321 63.158 17.19 0.00 38.26 5.18
329 345 4.324267 ACATACACAGGCTTACAACTTCC 58.676 43.478 0.00 0.00 0.00 3.46
485 510 4.849111 CTCGTTTCTTGAGGAATGTAGC 57.151 45.455 0.00 0.00 33.53 3.58
504 529 1.352687 AGAAAAGGGTGAAGCCTCCTC 59.647 52.381 0.67 2.05 37.43 3.71
592 623 9.733907 AGTATTTCCTAGTACCCCAAAACTATA 57.266 33.333 0.00 0.00 0.00 1.31
593 624 8.634188 AGTATTTCCTAGTACCCCAAAACTAT 57.366 34.615 0.00 0.00 0.00 2.12
594 625 7.126268 GGAGTATTTCCTAGTACCCCAAAACTA 59.874 40.741 0.00 0.00 43.16 2.24
595 626 6.069789 GGAGTATTTCCTAGTACCCCAAAACT 60.070 42.308 0.00 0.00 43.16 2.66
596 627 6.118170 GGAGTATTTCCTAGTACCCCAAAAC 58.882 44.000 0.00 0.00 43.16 2.43
597 628 5.791664 TGGAGTATTTCCTAGTACCCCAAAA 59.208 40.000 0.00 0.00 46.92 2.44
607 638 7.064728 GCTTTGTTGTACTGGAGTATTTCCTAG 59.935 40.741 0.00 0.00 46.92 3.02
608 639 6.877322 GCTTTGTTGTACTGGAGTATTTCCTA 59.123 38.462 0.00 0.00 46.92 2.94
610 641 5.472137 TGCTTTGTTGTACTGGAGTATTTCC 59.528 40.000 0.00 0.00 46.98 3.13
611 642 6.554334 TGCTTTGTTGTACTGGAGTATTTC 57.446 37.500 0.00 0.00 32.54 2.17
612 643 6.952773 TTGCTTTGTTGTACTGGAGTATTT 57.047 33.333 0.00 0.00 32.54 1.40
613 644 6.952773 TTTGCTTTGTTGTACTGGAGTATT 57.047 33.333 0.00 0.00 32.54 1.89
614 645 8.807948 ATATTTGCTTTGTTGTACTGGAGTAT 57.192 30.769 0.00 0.00 32.54 2.12
615 646 9.158233 GTATATTTGCTTTGTTGTACTGGAGTA 57.842 33.333 0.00 0.00 0.00 2.59
616 647 7.883311 AGTATATTTGCTTTGTTGTACTGGAGT 59.117 33.333 0.00 0.00 0.00 3.85
617 648 8.177663 CAGTATATTTGCTTTGTTGTACTGGAG 58.822 37.037 0.00 0.00 36.05 3.86
618 649 8.039603 CAGTATATTTGCTTTGTTGTACTGGA 57.960 34.615 0.00 0.00 36.05 3.86
619 650 7.250569 CCAGTATATTTGCTTTGTTGTACTGG 58.749 38.462 12.24 12.24 46.43 4.00
620 651 6.747280 GCCAGTATATTTGCTTTGTTGTACTG 59.253 38.462 0.00 0.00 38.18 2.74
643 674 5.527214 AGTGTATTTGCTTTTCCTTTTTGCC 59.473 36.000 0.00 0.00 0.00 4.52
651 682 3.552604 TGCGAGTGTATTTGCTTTTCC 57.447 42.857 0.00 0.00 0.00 3.13
672 703 6.039616 TGCGAGTGTATTTGCTTTTCTTTTT 58.960 32.000 0.00 0.00 0.00 1.94
673 704 5.587289 TGCGAGTGTATTTGCTTTTCTTTT 58.413 33.333 0.00 0.00 0.00 2.27
674 705 5.181690 TGCGAGTGTATTTGCTTTTCTTT 57.818 34.783 0.00 0.00 0.00 2.52
675 706 4.829064 TGCGAGTGTATTTGCTTTTCTT 57.171 36.364 0.00 0.00 0.00 2.52
676 707 4.455533 TGATGCGAGTGTATTTGCTTTTCT 59.544 37.500 0.00 0.00 0.00 2.52
677 708 4.554973 GTGATGCGAGTGTATTTGCTTTTC 59.445 41.667 0.00 0.00 0.00 2.29
678 709 4.023279 TGTGATGCGAGTGTATTTGCTTTT 60.023 37.500 0.00 0.00 0.00 2.27
679 710 3.501828 TGTGATGCGAGTGTATTTGCTTT 59.498 39.130 0.00 0.00 0.00 3.51
680 711 3.073678 TGTGATGCGAGTGTATTTGCTT 58.926 40.909 0.00 0.00 0.00 3.91
681 712 2.698803 TGTGATGCGAGTGTATTTGCT 58.301 42.857 0.00 0.00 0.00 3.91
682 713 3.357021 CATGTGATGCGAGTGTATTTGC 58.643 45.455 0.00 0.00 0.00 3.68
716 747 4.166011 GCACATCCAAGGCGTCGC 62.166 66.667 9.22 9.22 0.00 5.19
720 751 1.444895 GCAAAGCACATCCAAGGCG 60.445 57.895 0.00 0.00 0.00 5.52
757 788 4.091945 TCTCGACCGTATATTTCGTATCGG 59.908 45.833 16.00 0.00 38.41 4.18
788 819 2.383527 GCGTCCTCTTTGGCTCGTG 61.384 63.158 0.00 0.00 36.12 4.35
789 820 2.048127 GCGTCCTCTTTGGCTCGT 60.048 61.111 0.00 0.00 36.12 4.18
794 825 2.464459 GGATGCGCGTCCTCTTTGG 61.464 63.158 36.14 0.00 35.32 3.28
802 833 4.570663 AGCGGTAGGATGCGCGTC 62.571 66.667 21.53 21.53 35.87 5.19
1032 1316 1.673329 GCCTTCTCGACCTTGTTCTCC 60.673 57.143 0.00 0.00 0.00 3.71
1236 1520 0.687427 TGGAGGAGATGCCGATGTCA 60.687 55.000 0.00 0.00 43.43 3.58
1326 1610 1.923227 GCTTCTTGTTGTAGCGGGCC 61.923 60.000 0.00 0.00 29.78 5.80
1647 2021 6.591834 AGCATTAGTAAGAACATCACTGTCAC 59.408 38.462 0.00 0.00 33.36 3.67
1650 2024 5.877012 CCAGCATTAGTAAGAACATCACTGT 59.123 40.000 0.00 0.00 37.12 3.55
1653 2027 4.878397 AGCCAGCATTAGTAAGAACATCAC 59.122 41.667 0.00 0.00 0.00 3.06
1654 2028 5.102953 AGCCAGCATTAGTAAGAACATCA 57.897 39.130 0.00 0.00 0.00 3.07
1736 2111 0.246635 AACCAGCAGCGGTACTACTG 59.753 55.000 9.02 10.26 38.76 2.74
1743 2118 0.957395 CATTCAGAACCAGCAGCGGT 60.957 55.000 3.38 3.38 42.71 5.68
1746 2121 0.964358 AGCCATTCAGAACCAGCAGC 60.964 55.000 4.24 0.00 0.00 5.25
1794 2169 5.104402 TGCATCACTCTAAATCCCATCTCAA 60.104 40.000 0.00 0.00 0.00 3.02
1821 2196 3.466836 TGAATTAATCACTAGCAGCGGG 58.533 45.455 0.00 0.00 31.50 6.13
1838 2213 7.032242 TGGTACAAATCAGGTCGGACTGAAT 62.032 44.000 12.71 3.57 43.33 2.57
1902 2278 3.671928 GCTGAACTTGCATTGCTACAAAG 59.328 43.478 10.49 7.48 0.00 2.77
1903 2279 3.318839 AGCTGAACTTGCATTGCTACAAA 59.681 39.130 10.49 0.00 0.00 2.83
1904 2280 2.886523 AGCTGAACTTGCATTGCTACAA 59.113 40.909 10.49 0.00 0.00 2.41
1905 2281 2.507484 AGCTGAACTTGCATTGCTACA 58.493 42.857 10.49 2.61 0.00 2.74
1906 2282 3.565905 AAGCTGAACTTGCATTGCTAC 57.434 42.857 10.49 0.00 37.17 3.58
1907 2283 3.569277 TGAAAGCTGAACTTGCATTGCTA 59.431 39.130 10.49 0.87 39.17 3.49
1908 2284 2.363038 TGAAAGCTGAACTTGCATTGCT 59.637 40.909 10.49 0.00 39.17 3.91
1980 2356 9.982651 TCAGAAAGATATACTAGTACAAATGGC 57.017 33.333 4.31 0.00 0.00 4.40
1993 2369 7.201565 GGCAGTGTTCAGTTCAGAAAGATATAC 60.202 40.741 0.00 0.00 0.00 1.47
1994 2370 6.818644 GGCAGTGTTCAGTTCAGAAAGATATA 59.181 38.462 0.00 0.00 0.00 0.86
1995 2371 5.645497 GGCAGTGTTCAGTTCAGAAAGATAT 59.355 40.000 0.00 0.00 0.00 1.63
1996 2372 4.997395 GGCAGTGTTCAGTTCAGAAAGATA 59.003 41.667 0.00 0.00 0.00 1.98
2003 2379 0.583438 CGTGGCAGTGTTCAGTTCAG 59.417 55.000 0.00 0.00 0.00 3.02
2021 2397 4.794762 CACATATCATCAGTTTGCCAAACG 59.205 41.667 14.22 9.66 45.88 3.60
2155 2585 5.886960 AGAAATCGCTAGCAACAGAAATT 57.113 34.783 16.45 3.83 0.00 1.82
2185 2615 0.111061 AGCCCTCTGTGTGAATTGCA 59.889 50.000 0.00 0.00 0.00 4.08
2186 2616 1.068055 CAAGCCCTCTGTGTGAATTGC 60.068 52.381 0.00 0.00 0.00 3.56
2187 2617 2.233271 ACAAGCCCTCTGTGTGAATTG 58.767 47.619 0.00 0.00 0.00 2.32
2189 2619 3.788227 TTACAAGCCCTCTGTGTGAAT 57.212 42.857 0.00 0.00 0.00 2.57
2190 2620 3.788227 ATTACAAGCCCTCTGTGTGAA 57.212 42.857 0.00 0.00 0.00 3.18
2191 2621 4.901197 TTATTACAAGCCCTCTGTGTGA 57.099 40.909 0.00 0.00 0.00 3.58
2195 2625 4.687219 GCCAGATTATTACAAGCCCTCTGT 60.687 45.833 0.00 0.00 0.00 3.41
2196 2626 3.817647 GCCAGATTATTACAAGCCCTCTG 59.182 47.826 0.00 0.00 0.00 3.35
2197 2627 3.459598 TGCCAGATTATTACAAGCCCTCT 59.540 43.478 0.00 0.00 0.00 3.69
2198 2628 3.820557 TGCCAGATTATTACAAGCCCTC 58.179 45.455 0.00 0.00 0.00 4.30
2199 2629 3.951563 TGCCAGATTATTACAAGCCCT 57.048 42.857 0.00 0.00 0.00 5.19
2200 2630 3.891366 ACATGCCAGATTATTACAAGCCC 59.109 43.478 0.00 0.00 0.00 5.19
2201 2631 4.339247 ACACATGCCAGATTATTACAAGCC 59.661 41.667 0.00 0.00 0.00 4.35
2211 2641 0.388907 GCGCAAACACATGCCAGATT 60.389 50.000 0.30 0.00 43.47 2.40
2217 2647 2.651137 GCACAGCGCAAACACATGC 61.651 57.895 11.47 4.41 42.94 4.06
2232 2662 3.418068 GCTCAGTGACAGCGGCAC 61.418 66.667 1.45 6.44 36.53 5.01
2237 2667 4.385405 AGGGCGCTCAGTGACAGC 62.385 66.667 11.40 6.54 0.00 4.40
2238 2668 2.433838 CAGGGCGCTCAGTGACAG 60.434 66.667 11.40 0.00 0.00 3.51
2239 2669 4.687215 GCAGGGCGCTCAGTGACA 62.687 66.667 11.40 0.00 37.77 3.58
2284 2714 1.024579 CAGGGCGAGGCAAACGTTAT 61.025 55.000 0.00 0.00 0.00 1.89
2297 2727 1.672356 CCAAGAACAGGACAGGGCG 60.672 63.158 0.00 0.00 0.00 6.13
2350 2780 6.152831 TGCTACACAACTGACTGATACTATGT 59.847 38.462 0.00 0.00 0.00 2.29
2351 2781 6.564328 TGCTACACAACTGACTGATACTATG 58.436 40.000 0.00 0.00 0.00 2.23
2352 2782 6.775594 TGCTACACAACTGACTGATACTAT 57.224 37.500 0.00 0.00 0.00 2.12
2353 2783 6.405842 CCATGCTACACAACTGACTGATACTA 60.406 42.308 0.00 0.00 0.00 1.82
2354 2784 5.414360 CATGCTACACAACTGACTGATACT 58.586 41.667 0.00 0.00 0.00 2.12
2355 2785 4.568359 CCATGCTACACAACTGACTGATAC 59.432 45.833 0.00 0.00 0.00 2.24
2356 2786 4.466015 TCCATGCTACACAACTGACTGATA 59.534 41.667 0.00 0.00 0.00 2.15
2357 2787 3.261643 TCCATGCTACACAACTGACTGAT 59.738 43.478 0.00 0.00 0.00 2.90
2358 2788 2.632512 TCCATGCTACACAACTGACTGA 59.367 45.455 0.00 0.00 0.00 3.41
2359 2789 2.998670 CTCCATGCTACACAACTGACTG 59.001 50.000 0.00 0.00 0.00 3.51
2360 2790 2.634940 ACTCCATGCTACACAACTGACT 59.365 45.455 0.00 0.00 0.00 3.41
2361 2791 3.045601 ACTCCATGCTACACAACTGAC 57.954 47.619 0.00 0.00 0.00 3.51
2362 2792 3.195610 CCTACTCCATGCTACACAACTGA 59.804 47.826 0.00 0.00 0.00 3.41
2363 2793 3.055819 ACCTACTCCATGCTACACAACTG 60.056 47.826 0.00 0.00 0.00 3.16
2364 2794 3.173965 ACCTACTCCATGCTACACAACT 58.826 45.455 0.00 0.00 0.00 3.16
2365 2795 3.611766 ACCTACTCCATGCTACACAAC 57.388 47.619 0.00 0.00 0.00 3.32
2366 2796 3.580895 TGAACCTACTCCATGCTACACAA 59.419 43.478 0.00 0.00 0.00 3.33
2367 2797 3.169908 TGAACCTACTCCATGCTACACA 58.830 45.455 0.00 0.00 0.00 3.72
2368 2798 3.447586 TCTGAACCTACTCCATGCTACAC 59.552 47.826 0.00 0.00 0.00 2.90
2369 2799 3.447586 GTCTGAACCTACTCCATGCTACA 59.552 47.826 0.00 0.00 0.00 2.74
2370 2800 3.702045 AGTCTGAACCTACTCCATGCTAC 59.298 47.826 0.00 0.00 0.00 3.58
2371 2801 3.982516 AGTCTGAACCTACTCCATGCTA 58.017 45.455 0.00 0.00 0.00 3.49
2372 2802 2.826488 AGTCTGAACCTACTCCATGCT 58.174 47.619 0.00 0.00 0.00 3.79
2373 2803 3.265791 CAAGTCTGAACCTACTCCATGC 58.734 50.000 0.00 0.00 0.00 4.06
2374 2804 3.265791 GCAAGTCTGAACCTACTCCATG 58.734 50.000 0.00 0.00 0.00 3.66
2375 2805 2.237392 GGCAAGTCTGAACCTACTCCAT 59.763 50.000 0.00 0.00 0.00 3.41
2376 2806 1.623811 GGCAAGTCTGAACCTACTCCA 59.376 52.381 0.00 0.00 0.00 3.86
2377 2807 1.623811 TGGCAAGTCTGAACCTACTCC 59.376 52.381 0.00 0.00 0.00 3.85
2378 2808 3.402628 TTGGCAAGTCTGAACCTACTC 57.597 47.619 0.00 0.00 0.00 2.59
2379 2809 3.136626 AGTTTGGCAAGTCTGAACCTACT 59.863 43.478 0.00 0.00 0.00 2.57
2380 2810 3.477530 AGTTTGGCAAGTCTGAACCTAC 58.522 45.455 0.00 0.00 0.00 3.18
2381 2811 3.857157 AGTTTGGCAAGTCTGAACCTA 57.143 42.857 0.00 0.00 0.00 3.08
2382 2812 2.736670 AGTTTGGCAAGTCTGAACCT 57.263 45.000 0.00 0.00 0.00 3.50
2383 2813 4.911514 TTTAGTTTGGCAAGTCTGAACC 57.088 40.909 14.31 0.00 0.00 3.62
2384 2814 6.503524 TGATTTTAGTTTGGCAAGTCTGAAC 58.496 36.000 14.31 3.82 0.00 3.18
2385 2815 6.321181 ACTGATTTTAGTTTGGCAAGTCTGAA 59.679 34.615 14.31 10.73 0.00 3.02
2386 2816 5.827797 ACTGATTTTAGTTTGGCAAGTCTGA 59.172 36.000 14.31 6.21 0.00 3.27
2387 2817 6.076981 ACTGATTTTAGTTTGGCAAGTCTG 57.923 37.500 14.31 1.34 0.00 3.51
2388 2818 6.715347 AACTGATTTTAGTTTGGCAAGTCT 57.285 33.333 0.00 6.16 37.62 3.24
2398 2828 7.004086 TCACAGATCCCAAACTGATTTTAGTT 58.996 34.615 0.00 0.00 42.43 2.24
2399 2829 6.542821 TCACAGATCCCAAACTGATTTTAGT 58.457 36.000 0.00 0.00 37.54 2.24
2400 2830 7.636150 ATCACAGATCCCAAACTGATTTTAG 57.364 36.000 0.00 0.00 37.54 1.85
2401 2831 7.577426 GCAATCACAGATCCCAAACTGATTTTA 60.577 37.037 0.00 0.00 37.54 1.52
2402 2832 6.694447 CAATCACAGATCCCAAACTGATTTT 58.306 36.000 0.00 0.00 37.54 1.82
2403 2833 5.337009 GCAATCACAGATCCCAAACTGATTT 60.337 40.000 0.00 0.00 37.54 2.17
2404 2834 4.159135 GCAATCACAGATCCCAAACTGATT 59.841 41.667 0.00 0.00 37.54 2.57
2405 2835 3.698040 GCAATCACAGATCCCAAACTGAT 59.302 43.478 0.00 0.00 37.54 2.90
2406 2836 3.084039 GCAATCACAGATCCCAAACTGA 58.916 45.455 0.00 0.00 37.54 3.41
2407 2837 2.165030 GGCAATCACAGATCCCAAACTG 59.835 50.000 0.00 0.00 39.65 3.16
2408 2838 2.225091 TGGCAATCACAGATCCCAAACT 60.225 45.455 0.00 0.00 0.00 2.66
2409 2839 2.170166 TGGCAATCACAGATCCCAAAC 58.830 47.619 0.00 0.00 0.00 2.93
2410 2840 2.601240 TGGCAATCACAGATCCCAAA 57.399 45.000 0.00 0.00 0.00 3.28
2411 2841 2.562298 GTTTGGCAATCACAGATCCCAA 59.438 45.455 0.00 7.55 0.00 4.12
2412 2842 2.170166 GTTTGGCAATCACAGATCCCA 58.830 47.619 0.00 0.00 0.00 4.37
2413 2843 2.450476 AGTTTGGCAATCACAGATCCC 58.550 47.619 10.67 0.00 0.00 3.85
2414 2844 5.643379 TTTAGTTTGGCAATCACAGATCC 57.357 39.130 10.67 0.00 0.00 3.36
2415 2845 5.863935 GGTTTTAGTTTGGCAATCACAGATC 59.136 40.000 10.67 0.00 0.00 2.75
2416 2846 5.564651 CGGTTTTAGTTTGGCAATCACAGAT 60.565 40.000 10.67 0.00 0.00 2.90
2417 2847 4.261405 CGGTTTTAGTTTGGCAATCACAGA 60.261 41.667 10.67 0.00 0.00 3.41
2418 2848 3.980775 CGGTTTTAGTTTGGCAATCACAG 59.019 43.478 10.67 0.00 0.00 3.66
2419 2849 3.381908 ACGGTTTTAGTTTGGCAATCACA 59.618 39.130 10.67 0.00 0.00 3.58
2420 2850 3.733727 CACGGTTTTAGTTTGGCAATCAC 59.266 43.478 10.67 2.61 0.00 3.06
2421 2851 3.797184 GCACGGTTTTAGTTTGGCAATCA 60.797 43.478 10.67 0.00 0.00 2.57
2422 2852 2.729360 GCACGGTTTTAGTTTGGCAATC 59.271 45.455 0.00 0.00 0.00 2.67
2423 2853 2.101582 TGCACGGTTTTAGTTTGGCAAT 59.898 40.909 0.00 0.00 0.00 3.56
2424 2854 1.476891 TGCACGGTTTTAGTTTGGCAA 59.523 42.857 0.00 0.00 0.00 4.52
2425 2855 1.103803 TGCACGGTTTTAGTTTGGCA 58.896 45.000 0.00 0.00 0.00 4.92
2426 2856 1.483316 GTGCACGGTTTTAGTTTGGC 58.517 50.000 0.00 0.00 0.00 4.52
2427 2857 1.749153 CGTGCACGGTTTTAGTTTGG 58.251 50.000 31.15 0.00 35.37 3.28
2442 2872 0.869880 GAAACAAAGGTGCACCGTGC 60.870 55.000 31.13 16.93 45.29 5.34
2443 2873 3.250220 GAAACAAAGGTGCACCGTG 57.750 52.632 30.14 30.14 42.08 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.