Multiple sequence alignment - TraesCS1B01G377100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G377100 chr1B 100.000 4116 0 0 1 4116 608948737 608952852 0.000000e+00 7601.0
1 TraesCS1B01G377100 chr1B 87.745 204 14 5 381 584 608868249 608868441 1.150000e-55 228.0
2 TraesCS1B01G377100 chr1B 79.602 201 33 7 1308 1501 91882036 91881837 2.000000e-28 137.0
3 TraesCS1B01G377100 chr1B 88.182 110 7 2 212 318 608868137 608868243 4.320000e-25 126.0
4 TraesCS1B01G377100 chr1B 74.411 297 58 16 2782 3067 119773032 119772743 1.210000e-20 111.0
5 TraesCS1B01G377100 chr1D 91.131 3033 121 60 822 3787 445588267 445591218 0.000000e+00 3975.0
6 TraesCS1B01G377100 chr1D 82.429 387 14 12 432 818 445587893 445588225 5.210000e-74 289.0
7 TraesCS1B01G377100 chr1D 84.553 246 18 9 248 490 445583488 445583716 4.140000e-55 226.0
8 TraesCS1B01G377100 chr1D 83.732 209 29 4 3913 4116 445591419 445591627 4.200000e-45 193.0
9 TraesCS1B01G377100 chr1D 86.145 166 15 2 488 648 445586564 445586726 5.470000e-39 172.0
10 TraesCS1B01G377100 chr1D 73.986 296 61 14 2782 3067 76456612 76456323 5.630000e-19 106.0
11 TraesCS1B01G377100 chr1D 86.250 80 11 0 3789 3868 197523393 197523472 2.040000e-13 87.9
12 TraesCS1B01G377100 chr1A 89.958 3067 140 71 812 3787 541770138 541773127 0.000000e+00 3803.0
13 TraesCS1B01G377100 chr1A 82.250 569 37 24 264 817 541769592 541770111 2.270000e-117 433.0
14 TraesCS1B01G377100 chr1A 81.657 338 23 21 266 584 541729639 541729956 1.140000e-60 244.0
15 TraesCS1B01G377100 chr1A 95.370 108 5 0 159 266 541769163 541769270 5.470000e-39 172.0
16 TraesCS1B01G377100 chr1A 89.320 103 9 2 1308 1409 56337699 56337800 1.200000e-25 128.0
17 TraesCS1B01G377100 chr1A 74.675 308 63 12 2782 3081 77074556 77074256 5.590000e-24 122.0
18 TraesCS1B01G377100 chr1A 82.051 78 10 1 116 193 541729470 541729543 3.430000e-06 63.9
19 TraesCS1B01G377100 chr7D 88.108 185 20 2 1639 1822 164874338 164874155 6.930000e-53 219.0
20 TraesCS1B01G377100 chr7D 80.543 221 36 5 1305 1520 400171048 400170830 3.290000e-36 163.0
21 TraesCS1B01G377100 chr7D 83.951 81 13 0 3789 3869 471219326 471219406 1.230000e-10 78.7
22 TraesCS1B01G377100 chr7A 89.091 165 16 2 1659 1822 166751795 166751632 1.940000e-48 204.0
23 TraesCS1B01G377100 chr7A 81.250 224 35 5 1302 1520 457867102 457866881 1.520000e-39 174.0
24 TraesCS1B01G377100 chr6B 85.864 191 23 4 1639 1827 574715521 574715709 2.510000e-47 200.0
25 TraesCS1B01G377100 chr6A 85.864 191 23 4 1639 1827 529019292 529019480 2.510000e-47 200.0
26 TraesCS1B01G377100 chr6D 85.340 191 24 4 1639 1827 384439336 384439524 1.170000e-45 195.0
27 TraesCS1B01G377100 chr6D 86.842 76 10 0 3793 3868 402347246 402347321 7.330000e-13 86.1
28 TraesCS1B01G377100 chr7B 81.250 224 35 5 1302 1520 409712042 409711821 1.520000e-39 174.0
29 TraesCS1B01G377100 chr7B 86.842 76 10 0 3793 3868 493522416 493522491 7.330000e-13 86.1
30 TraesCS1B01G377100 chr5B 84.906 159 20 4 1657 1813 314193464 314193308 1.530000e-34 158.0
31 TraesCS1B01G377100 chr5B 82.486 177 27 4 1639 1813 314277181 314277355 7.130000e-33 152.0
32 TraesCS1B01G377100 chr3D 80.412 194 25 11 1307 1490 120148562 120148372 7.180000e-28 135.0
33 TraesCS1B01G377100 chr3D 86.301 73 10 0 3794 3866 104811281 104811209 3.410000e-11 80.5
34 TraesCS1B01G377100 chr3A 79.793 193 26 11 1308 1490 127090469 127090280 1.200000e-25 128.0
35 TraesCS1B01G377100 chr2D 87.013 77 10 0 3793 3869 7529300 7529376 2.040000e-13 87.9
36 TraesCS1B01G377100 chr2D 84.146 82 10 3 3789 3868 38791352 38791432 4.410000e-10 76.8
37 TraesCS1B01G377100 chr5D 86.842 76 10 0 3793 3868 564975673 564975748 7.330000e-13 86.1
38 TraesCS1B01G377100 chr5D 85.333 75 11 0 3793 3867 462278223 462278149 1.230000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G377100 chr1B 608948737 608952852 4115 False 7601.000000 7601 100.000000 1 4116 1 chr1B.!!$F1 4115
1 TraesCS1B01G377100 chr1D 445583488 445591627 8139 False 971.000000 3975 85.598000 248 4116 5 chr1D.!!$F2 3868
2 TraesCS1B01G377100 chr1A 541769163 541773127 3964 False 1469.333333 3803 89.192667 159 3787 3 chr1A.!!$F3 3628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.112412 AAACAAGGCCAGTTCGGGAT 59.888 50.0 13.2 0.0 34.06 3.85 F
1292 5671 0.097674 GTGTTCGATGGCTGACATGC 59.902 55.0 0.0 0.0 40.72 4.06 F
1874 6275 0.606096 TCTACACACCACATCCACCG 59.394 55.0 0.0 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 6242 0.034896 GGTGTGTAGACAGTGGGGTG 59.965 60.0 0.0 0.0 30.74 4.61 R
2216 6648 0.457851 ATAGCAGCTCGTCCTGTGTC 59.542 55.0 0.0 0.0 35.28 3.67 R
3336 7792 0.179145 ACGACGGCAGCAGTACATAC 60.179 55.0 0.0 0.0 0.00 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.654877 ACCCGTGTAAGCTGGACG 59.345 61.111 5.64 5.64 0.00 4.79
18 19 2.813908 CCCGTGTAAGCTGGACGC 60.814 66.667 6.85 5.00 39.57 5.19
32 33 2.614829 GGACGCTAGGCCTGATAAAA 57.385 50.000 17.99 0.00 44.23 1.52
33 34 2.914059 GGACGCTAGGCCTGATAAAAA 58.086 47.619 17.99 0.00 44.23 1.94
60 61 9.481340 AAAATCAGATCTTTTTCTAAACAAGGC 57.519 29.630 0.00 0.00 0.00 4.35
62 63 6.068010 TCAGATCTTTTTCTAAACAAGGCCA 58.932 36.000 5.01 0.00 0.00 5.36
63 64 6.207417 TCAGATCTTTTTCTAAACAAGGCCAG 59.793 38.462 5.01 0.00 0.00 4.85
64 65 6.015940 CAGATCTTTTTCTAAACAAGGCCAGT 60.016 38.462 5.01 0.00 0.00 4.00
65 66 6.551227 AGATCTTTTTCTAAACAAGGCCAGTT 59.449 34.615 5.01 6.65 0.00 3.16
67 68 4.561735 TTTTCTAAACAAGGCCAGTTCG 57.438 40.909 13.20 8.47 0.00 3.95
68 69 2.178912 TCTAAACAAGGCCAGTTCGG 57.821 50.000 13.20 9.51 38.11 4.30
69 70 1.165270 CTAAACAAGGCCAGTTCGGG 58.835 55.000 13.20 4.44 34.06 5.14
70 71 0.766131 TAAACAAGGCCAGTTCGGGA 59.234 50.000 13.20 0.00 34.06 5.14
71 72 0.112412 AAACAAGGCCAGTTCGGGAT 59.888 50.000 13.20 0.00 34.06 3.85
72 73 0.112412 AACAAGGCCAGTTCGGGATT 59.888 50.000 5.01 0.00 34.06 3.01
73 74 0.112412 ACAAGGCCAGTTCGGGATTT 59.888 50.000 5.01 0.00 34.06 2.17
74 75 1.256812 CAAGGCCAGTTCGGGATTTT 58.743 50.000 5.01 0.00 34.06 1.82
75 76 1.067635 CAAGGCCAGTTCGGGATTTTG 60.068 52.381 5.01 0.00 34.06 2.44
77 78 0.966179 GGCCAGTTCGGGATTTTGTT 59.034 50.000 0.00 0.00 34.06 2.83
78 79 2.164338 GGCCAGTTCGGGATTTTGTTA 58.836 47.619 0.00 0.00 34.06 2.41
79 80 2.163613 GGCCAGTTCGGGATTTTGTTAG 59.836 50.000 0.00 0.00 34.06 2.34
80 81 2.415491 GCCAGTTCGGGATTTTGTTAGC 60.415 50.000 0.00 0.00 34.06 3.09
81 82 2.817258 CCAGTTCGGGATTTTGTTAGCA 59.183 45.455 0.00 0.00 0.00 3.49
82 83 3.443681 CCAGTTCGGGATTTTGTTAGCAT 59.556 43.478 0.00 0.00 0.00 3.79
83 84 4.638421 CCAGTTCGGGATTTTGTTAGCATA 59.362 41.667 0.00 0.00 0.00 3.14
84 85 5.124776 CCAGTTCGGGATTTTGTTAGCATAA 59.875 40.000 0.00 0.00 0.00 1.90
86 87 7.087639 CAGTTCGGGATTTTGTTAGCATAAAA 58.912 34.615 0.00 0.00 0.00 1.52
87 88 7.273381 CAGTTCGGGATTTTGTTAGCATAAAAG 59.727 37.037 0.00 0.00 0.00 2.27
88 89 6.202516 TCGGGATTTTGTTAGCATAAAAGG 57.797 37.500 0.00 0.00 0.00 3.11
91 92 7.393796 TCGGGATTTTGTTAGCATAAAAGGTTA 59.606 33.333 0.00 0.00 0.00 2.85
92 93 7.700656 CGGGATTTTGTTAGCATAAAAGGTTAG 59.299 37.037 0.00 0.00 0.00 2.34
93 94 8.745590 GGGATTTTGTTAGCATAAAAGGTTAGA 58.254 33.333 0.00 0.00 0.00 2.10
96 97 9.620660 ATTTTGTTAGCATAAAAGGTTAGAACG 57.379 29.630 0.00 0.00 0.00 3.95
97 98 6.730960 TGTTAGCATAAAAGGTTAGAACGG 57.269 37.500 0.00 0.00 0.00 4.44
98 99 6.465948 TGTTAGCATAAAAGGTTAGAACGGA 58.534 36.000 0.00 0.00 0.00 4.69
101 102 8.456471 GTTAGCATAAAAGGTTAGAACGGAAAT 58.544 33.333 0.00 0.00 0.00 2.17
102 103 7.085052 AGCATAAAAGGTTAGAACGGAAATC 57.915 36.000 0.00 0.00 0.00 2.17
103 104 6.884836 AGCATAAAAGGTTAGAACGGAAATCT 59.115 34.615 0.00 0.00 0.00 2.40
104 105 7.393515 AGCATAAAAGGTTAGAACGGAAATCTT 59.606 33.333 0.00 0.00 0.00 2.40
105 106 7.484959 GCATAAAAGGTTAGAACGGAAATCTTG 59.515 37.037 0.00 0.00 0.00 3.02
106 107 6.954487 AAAAGGTTAGAACGGAAATCTTGT 57.046 33.333 0.00 0.00 0.00 3.16
107 108 6.555812 AAAGGTTAGAACGGAAATCTTGTC 57.444 37.500 0.00 0.00 0.00 3.18
108 109 4.576879 AGGTTAGAACGGAAATCTTGTCC 58.423 43.478 0.00 0.00 0.00 4.02
110 111 5.001874 GGTTAGAACGGAAATCTTGTCCTT 58.998 41.667 0.00 0.00 32.53 3.36
111 112 5.121925 GGTTAGAACGGAAATCTTGTCCTTC 59.878 44.000 0.00 0.00 32.53 3.46
112 113 3.676093 AGAACGGAAATCTTGTCCTTCC 58.324 45.455 0.00 0.00 36.12 3.46
115 116 1.740025 CGGAAATCTTGTCCTTCCTGC 59.260 52.381 0.00 0.00 37.13 4.85
117 118 2.489722 GGAAATCTTGTCCTTCCTGCAC 59.510 50.000 0.00 0.00 36.48 4.57
118 119 1.813513 AATCTTGTCCTTCCTGCACG 58.186 50.000 0.00 0.00 0.00 5.34
119 120 0.674895 ATCTTGTCCTTCCTGCACGC 60.675 55.000 0.00 0.00 0.00 5.34
120 121 1.597854 CTTGTCCTTCCTGCACGCA 60.598 57.895 0.00 0.00 0.00 5.24
121 122 1.845809 CTTGTCCTTCCTGCACGCAC 61.846 60.000 0.00 0.00 0.00 5.34
122 123 3.414700 GTCCTTCCTGCACGCACG 61.415 66.667 0.00 0.00 0.00 5.34
125 126 3.648982 CTTCCTGCACGCACGCAA 61.649 61.111 0.00 0.00 42.45 4.85
126 127 3.584250 CTTCCTGCACGCACGCAAG 62.584 63.158 0.00 0.00 42.45 4.01
128 129 4.374702 CCTGCACGCACGCAAGAC 62.375 66.667 0.00 0.00 42.45 3.01
129 130 3.341043 CTGCACGCACGCAAGACT 61.341 61.111 0.00 0.00 42.45 3.24
131 132 2.425773 GCACGCACGCAAGACTTG 60.426 61.111 11.02 11.02 43.62 3.16
132 133 2.249309 CACGCACGCAAGACTTGG 59.751 61.111 16.80 9.30 43.62 3.61
134 135 3.726517 CGCACGCAAGACTTGGGG 61.727 66.667 29.32 20.73 46.69 4.96
135 136 4.043200 GCACGCAAGACTTGGGGC 62.043 66.667 29.32 24.89 46.69 5.80
138 139 2.193536 ACGCAAGACTTGGGGCAAC 61.194 57.895 29.32 7.51 46.69 4.17
139 140 2.192861 CGCAAGACTTGGGGCAACA 61.193 57.895 21.37 0.00 39.66 3.33
140 141 1.363807 GCAAGACTTGGGGCAACAC 59.636 57.895 16.80 0.00 44.44 3.32
151 152 4.629115 GCAACACGGTGGCACTGC 62.629 66.667 25.87 18.62 31.84 4.40
153 154 1.596752 CAACACGGTGGCACTGCTA 60.597 57.895 25.87 0.00 0.00 3.49
154 155 1.301716 AACACGGTGGCACTGCTAG 60.302 57.895 25.87 17.70 0.00 3.42
155 156 1.754380 AACACGGTGGCACTGCTAGA 61.754 55.000 25.87 0.00 0.00 2.43
177 178 0.729116 GTGGAATGACCTCATGCACG 59.271 55.000 0.00 0.00 39.86 5.34
196 197 2.190161 CGCATCTTTGATTCGTACGGA 58.810 47.619 16.52 7.20 0.00 4.69
228 229 6.356556 TGGTAGCATAGCAGTGATTATTGTT 58.643 36.000 0.00 0.00 45.27 2.83
325 4218 7.037438 CCAAACTAAGCACATGAGCATATTTT 58.963 34.615 17.61 12.61 36.85 1.82
331 4224 3.797865 GCACATGAGCATATTTTCCCAGC 60.798 47.826 10.48 0.00 0.00 4.85
332 4225 3.382227 CACATGAGCATATTTTCCCAGCA 59.618 43.478 0.00 0.00 0.00 4.41
334 4227 4.652421 ACATGAGCATATTTTCCCAGCATT 59.348 37.500 0.00 0.00 0.00 3.56
349 4669 9.972106 TTTCCCAGCATTTTGGAATTAAATAAT 57.028 25.926 0.00 0.00 40.87 1.28
351 4671 8.210265 TCCCAGCATTTTGGAATTAAATAATCC 58.790 33.333 0.00 0.00 40.87 3.01
352 4672 7.445096 CCCAGCATTTTGGAATTAAATAATCCC 59.555 37.037 0.00 0.00 40.87 3.85
353 4673 7.171337 CCAGCATTTTGGAATTAAATAATCCCG 59.829 37.037 0.00 0.00 40.87 5.14
354 4674 7.925483 CAGCATTTTGGAATTAAATAATCCCGA 59.075 33.333 0.00 0.00 0.00 5.14
355 4675 8.143835 AGCATTTTGGAATTAAATAATCCCGAG 58.856 33.333 0.00 0.00 0.00 4.63
356 4676 7.926018 GCATTTTGGAATTAAATAATCCCGAGT 59.074 33.333 0.00 0.00 0.00 4.18
357 4677 9.248291 CATTTTGGAATTAAATAATCCCGAGTG 57.752 33.333 0.00 0.00 0.00 3.51
358 4678 8.582657 TTTTGGAATTAAATAATCCCGAGTGA 57.417 30.769 0.00 0.00 0.00 3.41
359 4679 8.582657 TTTGGAATTAAATAATCCCGAGTGAA 57.417 30.769 0.00 0.00 0.00 3.18
360 4680 7.801716 TGGAATTAAATAATCCCGAGTGAAG 57.198 36.000 0.00 0.00 0.00 3.02
364 4684 6.801718 TTAAATAATCCCGAGTGAAGGAGA 57.198 37.500 0.00 0.00 35.08 3.71
367 4687 2.534042 ATCCCGAGTGAAGGAGAGAA 57.466 50.000 0.00 0.00 35.08 2.87
377 4697 1.276705 GAAGGAGAGAAGCGGGAAACT 59.723 52.381 0.00 0.00 0.00 2.66
390 4710 3.616802 GCGGGAAACTAGCTACTCAAAGT 60.617 47.826 0.00 0.00 0.00 2.66
395 4715 4.957684 AACTAGCTACTCAAAGTGGTGT 57.042 40.909 0.00 0.00 0.00 4.16
400 4720 3.641906 AGCTACTCAAAGTGGTGTGTACT 59.358 43.478 0.00 0.00 0.00 2.73
404 4724 6.072286 GCTACTCAAAGTGGTGTGTACTAGTA 60.072 42.308 0.00 0.00 0.00 1.82
405 4725 6.912951 ACTCAAAGTGGTGTGTACTAGTAT 57.087 37.500 5.75 0.00 0.00 2.12
406 4726 7.299246 ACTCAAAGTGGTGTGTACTAGTATT 57.701 36.000 5.75 0.00 0.00 1.89
407 4727 8.413309 ACTCAAAGTGGTGTGTACTAGTATTA 57.587 34.615 5.75 0.00 0.00 0.98
408 4728 8.521176 ACTCAAAGTGGTGTGTACTAGTATTAG 58.479 37.037 5.75 0.00 0.00 1.73
410 4730 8.301720 TCAAAGTGGTGTGTACTAGTATTAGTG 58.698 37.037 5.75 0.00 40.33 2.74
411 4731 8.301720 CAAAGTGGTGTGTACTAGTATTAGTGA 58.698 37.037 5.75 0.00 40.33 3.41
413 4733 6.095160 AGTGGTGTGTACTAGTATTAGTGAGC 59.905 42.308 5.75 0.16 40.33 4.26
414 4734 5.359009 TGGTGTGTACTAGTATTAGTGAGCC 59.641 44.000 5.75 4.44 40.33 4.70
416 4736 6.096564 GGTGTGTACTAGTATTAGTGAGCCTT 59.903 42.308 5.75 0.00 40.33 4.35
417 4737 6.973474 GTGTGTACTAGTATTAGTGAGCCTTG 59.027 42.308 5.75 0.00 40.33 3.61
418 4738 6.888088 TGTGTACTAGTATTAGTGAGCCTTGA 59.112 38.462 5.75 0.00 40.33 3.02
420 4740 7.067251 GTGTACTAGTATTAGTGAGCCTTGAGT 59.933 40.741 5.75 0.00 40.33 3.41
421 4741 8.270030 TGTACTAGTATTAGTGAGCCTTGAGTA 58.730 37.037 5.75 0.00 40.33 2.59
422 4742 9.118300 GTACTAGTATTAGTGAGCCTTGAGTAA 57.882 37.037 5.75 0.00 40.33 2.24
423 4743 8.770010 ACTAGTATTAGTGAGCCTTGAGTAAT 57.230 34.615 0.00 0.00 38.69 1.89
424 4744 8.634444 ACTAGTATTAGTGAGCCTTGAGTAATG 58.366 37.037 0.00 0.00 38.69 1.90
425 4745 7.425224 AGTATTAGTGAGCCTTGAGTAATGT 57.575 36.000 0.00 0.00 0.00 2.71
426 4746 8.534954 AGTATTAGTGAGCCTTGAGTAATGTA 57.465 34.615 0.00 0.00 0.00 2.29
427 4747 8.634444 AGTATTAGTGAGCCTTGAGTAATGTAG 58.366 37.037 0.00 0.00 0.00 2.74
428 4748 7.661536 ATTAGTGAGCCTTGAGTAATGTAGA 57.338 36.000 0.00 0.00 0.00 2.59
429 4749 5.590530 AGTGAGCCTTGAGTAATGTAGAG 57.409 43.478 0.00 0.00 0.00 2.43
430 4750 5.020132 AGTGAGCCTTGAGTAATGTAGAGT 58.980 41.667 0.00 0.00 0.00 3.24
431 4751 6.188407 AGTGAGCCTTGAGTAATGTAGAGTA 58.812 40.000 0.00 0.00 0.00 2.59
432 4752 6.836527 AGTGAGCCTTGAGTAATGTAGAGTAT 59.163 38.462 0.00 0.00 0.00 2.12
433 4753 7.343316 AGTGAGCCTTGAGTAATGTAGAGTATT 59.657 37.037 0.00 0.00 0.00 1.89
467 4787 1.202867 TGCCACAGTGCCATAAGTTGA 60.203 47.619 0.00 0.00 0.00 3.18
472 4792 4.290155 CACAGTGCCATAAGTTGAAACAC 58.710 43.478 0.00 0.00 0.00 3.32
520 4840 3.578688 GCCAAAATGATCTGAAAACGCT 58.421 40.909 0.00 0.00 0.00 5.07
523 4843 4.795278 CCAAAATGATCTGAAAACGCTAGC 59.205 41.667 4.06 4.06 0.00 3.42
525 4845 4.606457 AATGATCTGAAAACGCTAGCAC 57.394 40.909 16.45 0.97 0.00 4.40
681 5009 4.703575 TCTTCTTGAGCCCAAAATGATCTG 59.296 41.667 0.00 0.00 0.00 2.90
682 5010 4.305539 TCTTGAGCCCAAAATGATCTGA 57.694 40.909 0.00 0.00 0.00 3.27
693 5021 5.335583 CCAAAATGATCTGAAAACGCCAGTA 60.336 40.000 0.00 0.00 33.57 2.74
873 5247 1.098050 CCAACTACAATGGCAGAGGC 58.902 55.000 0.00 0.00 40.13 4.70
874 5248 0.729116 CAACTACAATGGCAGAGGCG 59.271 55.000 0.00 0.00 42.47 5.52
875 5249 1.026718 AACTACAATGGCAGAGGCGC 61.027 55.000 0.00 0.00 42.47 6.53
876 5250 1.450134 CTACAATGGCAGAGGCGCA 60.450 57.895 10.83 0.00 42.47 6.09
877 5251 1.434622 CTACAATGGCAGAGGCGCAG 61.435 60.000 10.83 0.00 42.47 5.18
878 5252 1.898330 TACAATGGCAGAGGCGCAGA 61.898 55.000 10.83 0.00 42.47 4.26
879 5253 2.124819 AATGGCAGAGGCGCAGAG 60.125 61.111 10.83 0.00 42.47 3.35
973 5349 2.666190 CTCCCCTGCACACACACG 60.666 66.667 0.00 0.00 0.00 4.49
1054 5433 3.991725 CTGGCTGGCCTGCTTCTCC 62.992 68.421 30.65 16.19 36.94 3.71
1255 5634 1.553706 CCCTTCTTGCTGCATTTCCT 58.446 50.000 1.84 0.00 0.00 3.36
1265 5644 1.258676 TGCATTTCCTCTGCATTGCA 58.741 45.000 11.50 11.50 44.30 4.08
1267 5646 2.201732 GCATTTCCTCTGCATTGCATG 58.798 47.619 12.53 6.78 38.13 4.06
1270 5649 0.612453 TTCCTCTGCATTGCATGGCA 60.612 50.000 12.53 11.69 38.13 4.92
1271 5650 0.396556 TCCTCTGCATTGCATGGCAT 60.397 50.000 12.53 0.00 38.76 4.40
1272 5651 0.464036 CCTCTGCATTGCATGGCATT 59.536 50.000 12.53 0.00 38.76 3.56
1273 5652 1.570813 CTCTGCATTGCATGGCATTG 58.429 50.000 12.53 8.32 41.15 2.82
1274 5653 0.899019 TCTGCATTGCATGGCATTGT 59.101 45.000 12.53 0.00 40.58 2.71
1279 5658 1.656594 CATTGCATGGCATTGTGTTCG 59.343 47.619 0.00 0.00 38.76 3.95
1292 5671 0.097674 GTGTTCGATGGCTGACATGC 59.902 55.000 0.00 0.00 40.72 4.06
1324 5707 0.608035 TTCAGGTGGATTTGACCGGC 60.608 55.000 0.00 0.00 38.64 6.13
1528 5911 3.450115 GTCCAGGTCCGTCCCTCG 61.450 72.222 0.00 0.00 36.75 4.63
1542 5925 2.317609 CCTCGTTCCGGCACTGTTG 61.318 63.158 1.96 0.00 0.00 3.33
1555 5942 2.737359 GCACTGTTGATTGATGCATGGG 60.737 50.000 2.46 0.00 36.30 4.00
1558 5949 1.117150 GTTGATTGATGCATGGGGCT 58.883 50.000 2.46 0.00 45.15 5.19
1563 5954 2.043652 GATGCATGGGGCTGGTGT 60.044 61.111 2.46 0.00 45.15 4.16
1642 6039 1.881602 GACCGACTGTCGCTAGGTT 59.118 57.895 23.87 3.83 38.82 3.50
1857 6258 4.227618 GGTACCACCCCACTGTCT 57.772 61.111 7.15 0.00 30.04 3.41
1874 6275 0.606096 TCTACACACCACATCCACCG 59.394 55.000 0.00 0.00 0.00 4.94
1894 6295 0.885879 TTGCCTCTGCTGCATCTTTG 59.114 50.000 1.31 0.00 38.76 2.77
1907 6323 2.424557 CATCTTTGTCAGCTGCTCTGT 58.575 47.619 9.47 0.00 43.32 3.41
1996 6412 0.687757 TGCCCCTACTACTGCTCCTG 60.688 60.000 0.00 0.00 0.00 3.86
2013 6429 1.633774 CTGCTCCGGATACCAGGTAT 58.366 55.000 12.36 12.36 0.00 2.73
2014 6430 1.971357 CTGCTCCGGATACCAGGTATT 59.029 52.381 13.74 0.00 0.00 1.89
2030 6446 1.851065 TATTGGTCCCAGCTGCTGCA 61.851 55.000 23.86 13.34 42.74 4.41
2034 6451 4.648626 TCCCAGCTGCTGCACCAC 62.649 66.667 23.86 0.00 42.74 4.16
2169 6586 0.959553 TCGTCTCGTCTGCTTTTCCT 59.040 50.000 0.00 0.00 0.00 3.36
2170 6587 1.068472 TCGTCTCGTCTGCTTTTCCTC 60.068 52.381 0.00 0.00 0.00 3.71
2195 6619 0.854062 CGTCTCGTGCCGTTTGTTTA 59.146 50.000 0.00 0.00 0.00 2.01
2196 6620 1.258458 CGTCTCGTGCCGTTTGTTTAA 59.742 47.619 0.00 0.00 0.00 1.52
2201 6633 1.424403 GTGCCGTTTGTTTAATGGGC 58.576 50.000 0.00 0.00 42.30 5.36
2207 6639 2.683867 CGTTTGTTTAATGGGCCCGATA 59.316 45.455 19.37 10.04 0.00 2.92
2215 6647 5.975693 TTAATGGGCCCGATAAATGAATC 57.024 39.130 19.37 0.00 0.00 2.52
2216 6648 1.890876 TGGGCCCGATAAATGAATCG 58.109 50.000 19.37 3.55 46.51 3.34
2427 6867 1.374758 GCGCTGCAGGAGTACAAGT 60.375 57.895 17.12 0.00 0.00 3.16
2447 6887 1.153647 CCACGCCGACAGCTTCATA 60.154 57.895 0.00 0.00 40.39 2.15
2599 7039 0.179150 CTCGTCTCCGCCAAGAAGAG 60.179 60.000 10.19 10.19 42.63 2.85
2609 7049 0.605589 CCAAGAAGAGCGTCTCCTGT 59.394 55.000 3.66 0.00 0.00 4.00
2689 7133 1.393539 CAGCTTCTTGCATTGCATTGC 59.606 47.619 23.33 23.33 45.94 3.56
2690 7134 1.275291 AGCTTCTTGCATTGCATTGCT 59.725 42.857 28.14 15.37 45.94 3.91
2709 7153 4.395625 TGCTTCTCCATCAATCCATCATC 58.604 43.478 0.00 0.00 0.00 2.92
2710 7154 3.436015 GCTTCTCCATCAATCCATCATCG 59.564 47.826 0.00 0.00 0.00 3.84
2711 7155 4.639334 CTTCTCCATCAATCCATCATCGT 58.361 43.478 0.00 0.00 0.00 3.73
2712 7156 4.263018 TCTCCATCAATCCATCATCGTC 57.737 45.455 0.00 0.00 0.00 4.20
2734 7178 1.330779 CGTCGTCGTCAACAGCAGAG 61.331 60.000 0.00 0.00 0.00 3.35
2735 7179 1.371758 TCGTCGTCAACAGCAGAGC 60.372 57.895 0.00 0.00 0.00 4.09
2736 7180 1.372251 CGTCGTCAACAGCAGAGCT 60.372 57.895 0.00 0.00 40.77 4.09
2760 7204 1.801771 GAGCAGAGCAGATCATCATGC 59.198 52.381 0.00 0.00 42.87 4.06
3115 7559 1.758514 CTCCTCCGGCCAGCTCTAA 60.759 63.158 2.24 0.00 0.00 2.10
3116 7560 1.305802 TCCTCCGGCCAGCTCTAAA 60.306 57.895 2.24 0.00 0.00 1.85
3117 7561 0.907704 TCCTCCGGCCAGCTCTAAAA 60.908 55.000 2.24 0.00 0.00 1.52
3118 7562 0.035439 CCTCCGGCCAGCTCTAAAAA 60.035 55.000 2.24 0.00 0.00 1.94
3119 7563 1.408822 CCTCCGGCCAGCTCTAAAAAT 60.409 52.381 2.24 0.00 0.00 1.82
3120 7564 1.943340 CTCCGGCCAGCTCTAAAAATC 59.057 52.381 2.24 0.00 0.00 2.17
3121 7565 1.559682 TCCGGCCAGCTCTAAAAATCT 59.440 47.619 2.24 0.00 0.00 2.40
3122 7566 2.769663 TCCGGCCAGCTCTAAAAATCTA 59.230 45.455 2.24 0.00 0.00 1.98
3130 7586 3.388350 AGCTCTAAAAATCTAGGGTCCCG 59.612 47.826 0.99 0.00 0.00 5.14
3164 7620 0.958822 GTTGCCTTGATTGTTCCGGT 59.041 50.000 0.00 0.00 0.00 5.28
3198 7654 0.747255 CCGTGAAGTGATCCGGAGAT 59.253 55.000 11.34 0.00 41.58 2.75
3334 7790 0.533308 GTACGCCCAACTGTGGTTCA 60.533 55.000 0.00 0.00 44.30 3.18
3335 7791 0.398696 TACGCCCAACTGTGGTTCAT 59.601 50.000 0.00 0.00 44.30 2.57
3336 7792 1.172180 ACGCCCAACTGTGGTTCATG 61.172 55.000 0.00 0.00 44.30 3.07
3337 7793 1.172180 CGCCCAACTGTGGTTCATGT 61.172 55.000 0.00 0.00 44.30 3.21
3400 7857 7.099266 TGTGAAATCAAGTCTTTGTGTCATT 57.901 32.000 0.00 0.00 35.73 2.57
3401 7858 7.195646 TGTGAAATCAAGTCTTTGTGTCATTC 58.804 34.615 0.00 0.00 35.73 2.67
3402 7859 7.067372 TGTGAAATCAAGTCTTTGTGTCATTCT 59.933 33.333 0.00 0.00 35.73 2.40
3403 7860 7.377928 GTGAAATCAAGTCTTTGTGTCATTCTG 59.622 37.037 0.00 0.00 35.73 3.02
3404 7861 7.282901 TGAAATCAAGTCTTTGTGTCATTCTGA 59.717 33.333 0.00 0.00 35.73 3.27
3405 7862 7.572523 AATCAAGTCTTTGTGTCATTCTGAA 57.427 32.000 0.00 0.00 35.73 3.02
3406 7863 7.572523 ATCAAGTCTTTGTGTCATTCTGAAA 57.427 32.000 0.00 0.00 35.73 2.69
3408 7865 7.642669 TCAAGTCTTTGTGTCATTCTGAAATC 58.357 34.615 0.00 0.00 35.73 2.17
3409 7866 7.282901 TCAAGTCTTTGTGTCATTCTGAAATCA 59.717 33.333 0.00 0.00 35.73 2.57
3410 7867 7.572523 AGTCTTTGTGTCATTCTGAAATCAA 57.427 32.000 0.00 0.00 0.00 2.57
3449 7917 3.499537 TCTGTAATGTGCAGCTCTGTTTG 59.500 43.478 0.00 0.00 34.21 2.93
3469 7937 3.814625 TGATTTGGTCTGTTGCACTGTA 58.185 40.909 0.00 0.00 0.00 2.74
3537 8016 4.201822 GCTACAAATCTCGCAGGTTTTAGG 60.202 45.833 0.00 0.00 0.00 2.69
3572 8053 8.040716 ACTCCTCTAATTAAAAATTGGTGACG 57.959 34.615 0.00 0.00 0.00 4.35
3581 8062 5.508200 AAAAATTGGTGACGCTTAACAGA 57.492 34.783 0.00 0.00 0.00 3.41
3582 8063 4.483476 AAATTGGTGACGCTTAACAGAC 57.517 40.909 0.00 0.00 0.00 3.51
3600 8081 4.208686 GAGAGTAGCGCCCACCGG 62.209 72.222 2.29 0.00 37.44 5.28
3641 8122 0.179089 CCAGAGGAGCGGTCAAGATG 60.179 60.000 17.59 8.90 0.00 2.90
3642 8123 0.179089 CAGAGGAGCGGTCAAGATGG 60.179 60.000 17.59 0.00 0.00 3.51
3671 8152 5.236911 GGTGTACAACCGAATAACTGAAACA 59.763 40.000 0.00 0.00 39.81 2.83
3672 8153 6.072893 GGTGTACAACCGAATAACTGAAACAT 60.073 38.462 0.00 0.00 39.81 2.71
3688 8169 3.895232 AACATAGCGGTGATCTCTTGT 57.105 42.857 0.00 0.00 0.00 3.16
3730 8217 1.817447 ACTCGTTGTACCTCCTAGCAC 59.183 52.381 0.00 0.00 0.00 4.40
3753 8240 1.279496 TGCCCAGTTGTAGATGCTCT 58.721 50.000 0.00 0.00 0.00 4.09
3765 8252 3.971453 ATGCTCTGCCGTGACGTCG 62.971 63.158 11.62 0.00 0.00 5.12
3774 8261 2.228241 CGTGACGTCGCGCCATATT 61.228 57.895 34.88 0.00 43.06 1.28
3787 8274 6.470877 GTCGCGCCATATTCATTTTCTTTTAA 59.529 34.615 0.00 0.00 0.00 1.52
3788 8275 7.167468 GTCGCGCCATATTCATTTTCTTTTAAT 59.833 33.333 0.00 0.00 0.00 1.40
3789 8276 8.346300 TCGCGCCATATTCATTTTCTTTTAATA 58.654 29.630 0.00 0.00 0.00 0.98
3826 8313 8.912988 AGTTCAATTTAAGATCAAGGTTTGACA 58.087 29.630 0.00 0.00 43.48 3.58
3827 8314 8.968242 GTTCAATTTAAGATCAAGGTTTGACAC 58.032 33.333 0.00 0.00 43.48 3.67
3828 8315 8.231692 TCAATTTAAGATCAAGGTTTGACACA 57.768 30.769 0.00 0.00 43.48 3.72
3829 8316 8.690884 TCAATTTAAGATCAAGGTTTGACACAA 58.309 29.630 0.00 0.00 43.48 3.33
3830 8317 9.311916 CAATTTAAGATCAAGGTTTGACACAAA 57.688 29.630 0.00 0.00 43.48 2.83
3831 8318 9.883142 AATTTAAGATCAAGGTTTGACACAAAA 57.117 25.926 0.00 0.00 43.48 2.44
3834 8321 9.959749 TTAAGATCAAGGTTTGACACAAAATAC 57.040 29.630 0.00 0.00 43.48 1.89
3835 8322 6.668323 AGATCAAGGTTTGACACAAAATACG 58.332 36.000 0.00 0.00 43.48 3.06
3836 8323 6.485313 AGATCAAGGTTTGACACAAAATACGA 59.515 34.615 0.00 0.00 43.48 3.43
3837 8324 6.438259 TCAAGGTTTGACACAAAATACGAA 57.562 33.333 0.00 0.00 34.08 3.85
3838 8325 6.491394 TCAAGGTTTGACACAAAATACGAAG 58.509 36.000 0.00 0.00 34.08 3.79
3839 8326 6.316640 TCAAGGTTTGACACAAAATACGAAGA 59.683 34.615 0.00 0.00 34.08 2.87
3840 8327 6.300354 AGGTTTGACACAAAATACGAAGAG 57.700 37.500 0.00 0.00 0.00 2.85
3841 8328 5.238650 AGGTTTGACACAAAATACGAAGAGG 59.761 40.000 0.00 0.00 0.00 3.69
3842 8329 5.237779 GGTTTGACACAAAATACGAAGAGGA 59.762 40.000 0.00 0.00 0.00 3.71
3843 8330 5.917541 TTGACACAAAATACGAAGAGGAC 57.082 39.130 0.00 0.00 0.00 3.85
3844 8331 4.312443 TGACACAAAATACGAAGAGGACC 58.688 43.478 0.00 0.00 0.00 4.46
3845 8332 4.202274 TGACACAAAATACGAAGAGGACCA 60.202 41.667 0.00 0.00 0.00 4.02
3846 8333 4.710324 ACACAAAATACGAAGAGGACCAA 58.290 39.130 0.00 0.00 0.00 3.67
3847 8334 5.313712 ACACAAAATACGAAGAGGACCAAT 58.686 37.500 0.00 0.00 0.00 3.16
3848 8335 6.469410 ACACAAAATACGAAGAGGACCAATA 58.531 36.000 0.00 0.00 0.00 1.90
3849 8336 6.938030 ACACAAAATACGAAGAGGACCAATAA 59.062 34.615 0.00 0.00 0.00 1.40
3850 8337 7.446013 ACACAAAATACGAAGAGGACCAATAAA 59.554 33.333 0.00 0.00 0.00 1.40
3851 8338 7.749126 CACAAAATACGAAGAGGACCAATAAAC 59.251 37.037 0.00 0.00 0.00 2.01
3852 8339 6.997239 AAATACGAAGAGGACCAATAAACC 57.003 37.500 0.00 0.00 0.00 3.27
3853 8340 5.687166 ATACGAAGAGGACCAATAAACCA 57.313 39.130 0.00 0.00 0.00 3.67
3854 8341 3.939066 ACGAAGAGGACCAATAAACCAG 58.061 45.455 0.00 0.00 0.00 4.00
3855 8342 2.678336 CGAAGAGGACCAATAAACCAGC 59.322 50.000 0.00 0.00 0.00 4.85
3856 8343 3.686016 GAAGAGGACCAATAAACCAGCA 58.314 45.455 0.00 0.00 0.00 4.41
3857 8344 4.273318 GAAGAGGACCAATAAACCAGCAT 58.727 43.478 0.00 0.00 0.00 3.79
3858 8345 3.624777 AGAGGACCAATAAACCAGCATG 58.375 45.455 0.00 0.00 0.00 4.06
3871 8358 2.961526 CAGCATGGAGGTAGTAACGT 57.038 50.000 0.00 0.00 0.00 3.99
3875 8362 2.098117 GCATGGAGGTAGTAACGTACGT 59.902 50.000 16.72 16.72 0.00 3.57
3878 8365 5.179368 GCATGGAGGTAGTAACGTACGTATA 59.821 44.000 23.12 12.18 0.00 1.47
3880 8367 6.598753 TGGAGGTAGTAACGTACGTATAAC 57.401 41.667 23.12 19.01 0.00 1.89
3906 8548 7.736447 ATAACTAACAGGATTTGCTCATAGC 57.264 36.000 0.00 0.00 42.82 2.97
3924 8566 9.787532 GCTCATAGCACACTGAAATAATAAAAA 57.212 29.630 0.00 0.00 41.89 1.94
3946 8588 3.933861 ATCCAGACTACCCCAAATGTC 57.066 47.619 0.00 0.00 0.00 3.06
3948 8590 1.278127 CCAGACTACCCCAAATGTCGT 59.722 52.381 0.00 0.00 34.92 4.34
3953 8595 1.278127 CTACCCCAAATGTCGTGACCT 59.722 52.381 0.00 0.00 0.00 3.85
3954 8596 0.250727 ACCCCAAATGTCGTGACCTG 60.251 55.000 0.00 0.00 0.00 4.00
3958 8600 2.028476 CCCAAATGTCGTGACCTGTCTA 60.028 50.000 0.00 0.00 0.00 2.59
3973 8615 3.576648 CTGTCTAGACGTCCAAAACTCC 58.423 50.000 17.85 0.00 0.00 3.85
3979 8621 3.349022 AGACGTCCAAAACTCCACAAAA 58.651 40.909 13.01 0.00 0.00 2.44
3981 8623 2.164827 ACGTCCAAAACTCCACAAAACC 59.835 45.455 0.00 0.00 0.00 3.27
3982 8624 2.793237 CGTCCAAAACTCCACAAAACCG 60.793 50.000 0.00 0.00 0.00 4.44
3987 8629 1.395635 AACTCCACAAAACCGAACCC 58.604 50.000 0.00 0.00 0.00 4.11
3990 8632 1.336755 CTCCACAAAACCGAACCCAAG 59.663 52.381 0.00 0.00 0.00 3.61
4011 8654 0.468648 GGTAGATTTGGGGGAGTCCG 59.531 60.000 2.26 0.00 36.01 4.79
4012 8655 1.492764 GTAGATTTGGGGGAGTCCGA 58.507 55.000 2.26 0.00 36.01 4.55
4020 8663 0.538584 GGGGGAGTCCGAAAATACGT 59.461 55.000 2.26 0.00 36.01 3.57
4033 8676 4.421948 GAAAATACGTCATGTCGGACTCT 58.578 43.478 16.43 0.00 35.63 3.24
4043 8686 0.038159 GTCGGACTCTGTCACCCTTG 60.038 60.000 0.00 0.00 33.68 3.61
4044 8687 1.185618 TCGGACTCTGTCACCCTTGG 61.186 60.000 0.07 0.00 33.68 3.61
4088 8731 0.251787 CCCAAAAACCCCTCTCCCAG 60.252 60.000 0.00 0.00 0.00 4.45
4095 8738 3.465403 CCCTCTCCCAGTGCCTCG 61.465 72.222 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.654877 CGTCCAGCTTACACGGGT 59.345 61.111 0.00 0.00 0.00 5.28
1 2 2.813908 GCGTCCAGCTTACACGGG 60.814 66.667 10.09 0.00 44.04 5.28
11 12 1.040646 TTATCAGGCCTAGCGTCCAG 58.959 55.000 3.98 0.00 0.00 3.86
12 13 1.491668 TTTATCAGGCCTAGCGTCCA 58.508 50.000 3.98 0.00 0.00 4.02
34 35 9.481340 GCCTTGTTTAGAAAAAGATCTGATTTT 57.519 29.630 5.06 5.06 0.00 1.82
37 38 6.721208 TGGCCTTGTTTAGAAAAAGATCTGAT 59.279 34.615 3.32 0.00 0.00 2.90
39 40 6.015940 ACTGGCCTTGTTTAGAAAAAGATCTG 60.016 38.462 3.32 0.00 0.00 2.90
40 41 6.071320 ACTGGCCTTGTTTAGAAAAAGATCT 58.929 36.000 3.32 0.00 0.00 2.75
41 42 6.332735 ACTGGCCTTGTTTAGAAAAAGATC 57.667 37.500 3.32 0.00 0.00 2.75
42 43 6.515035 CGAACTGGCCTTGTTTAGAAAAAGAT 60.515 38.462 14.19 0.00 0.00 2.40
43 44 5.220970 CGAACTGGCCTTGTTTAGAAAAAGA 60.221 40.000 14.19 0.00 0.00 2.52
44 45 4.976116 CGAACTGGCCTTGTTTAGAAAAAG 59.024 41.667 14.19 0.00 0.00 2.27
45 46 4.202070 CCGAACTGGCCTTGTTTAGAAAAA 60.202 41.667 14.19 0.00 0.00 1.94
46 47 3.316868 CCGAACTGGCCTTGTTTAGAAAA 59.683 43.478 14.19 0.00 0.00 2.29
47 48 2.882137 CCGAACTGGCCTTGTTTAGAAA 59.118 45.455 14.19 0.00 0.00 2.52
48 49 2.500229 CCGAACTGGCCTTGTTTAGAA 58.500 47.619 14.19 0.00 0.00 2.10
49 50 1.271163 CCCGAACTGGCCTTGTTTAGA 60.271 52.381 14.19 0.00 35.87 2.10
50 51 1.165270 CCCGAACTGGCCTTGTTTAG 58.835 55.000 14.19 11.61 35.87 1.85
51 52 0.766131 TCCCGAACTGGCCTTGTTTA 59.234 50.000 14.19 1.57 35.87 2.01
52 53 0.112412 ATCCCGAACTGGCCTTGTTT 59.888 50.000 14.19 0.00 35.87 2.83
53 54 0.112412 AATCCCGAACTGGCCTTGTT 59.888 50.000 13.17 13.17 35.87 2.83
54 55 0.112412 AAATCCCGAACTGGCCTTGT 59.888 50.000 3.32 0.00 35.87 3.16
56 57 1.256812 CAAAATCCCGAACTGGCCTT 58.743 50.000 3.32 0.00 35.87 4.35
57 58 0.112412 ACAAAATCCCGAACTGGCCT 59.888 50.000 3.32 0.00 35.87 5.19
58 59 0.966179 AACAAAATCCCGAACTGGCC 59.034 50.000 0.00 0.00 35.87 5.36
59 60 2.415491 GCTAACAAAATCCCGAACTGGC 60.415 50.000 0.00 0.00 35.87 4.85
60 61 2.817258 TGCTAACAAAATCCCGAACTGG 59.183 45.455 0.00 0.00 37.55 4.00
62 63 6.827586 TTTATGCTAACAAAATCCCGAACT 57.172 33.333 0.00 0.00 0.00 3.01
63 64 6.530181 CCTTTTATGCTAACAAAATCCCGAAC 59.470 38.462 0.00 0.00 0.00 3.95
64 65 6.209788 ACCTTTTATGCTAACAAAATCCCGAA 59.790 34.615 0.00 0.00 0.00 4.30
65 66 5.712917 ACCTTTTATGCTAACAAAATCCCGA 59.287 36.000 0.00 0.00 0.00 5.14
67 68 8.745590 TCTAACCTTTTATGCTAACAAAATCCC 58.254 33.333 0.00 0.00 0.00 3.85
70 71 9.620660 CGTTCTAACCTTTTATGCTAACAAAAT 57.379 29.630 0.00 0.00 0.00 1.82
71 72 8.077386 CCGTTCTAACCTTTTATGCTAACAAAA 58.923 33.333 0.00 0.00 0.00 2.44
72 73 7.444792 TCCGTTCTAACCTTTTATGCTAACAAA 59.555 33.333 0.00 0.00 0.00 2.83
73 74 6.935771 TCCGTTCTAACCTTTTATGCTAACAA 59.064 34.615 0.00 0.00 0.00 2.83
74 75 6.465948 TCCGTTCTAACCTTTTATGCTAACA 58.534 36.000 0.00 0.00 0.00 2.41
75 76 6.973229 TCCGTTCTAACCTTTTATGCTAAC 57.027 37.500 0.00 0.00 0.00 2.34
77 78 8.044908 AGATTTCCGTTCTAACCTTTTATGCTA 58.955 33.333 0.00 0.00 0.00 3.49
78 79 6.884836 AGATTTCCGTTCTAACCTTTTATGCT 59.115 34.615 0.00 0.00 0.00 3.79
79 80 7.085052 AGATTTCCGTTCTAACCTTTTATGC 57.915 36.000 0.00 0.00 0.00 3.14
80 81 8.512138 ACAAGATTTCCGTTCTAACCTTTTATG 58.488 33.333 0.00 0.00 0.00 1.90
81 82 8.631480 ACAAGATTTCCGTTCTAACCTTTTAT 57.369 30.769 0.00 0.00 0.00 1.40
82 83 7.173735 GGACAAGATTTCCGTTCTAACCTTTTA 59.826 37.037 0.00 0.00 0.00 1.52
83 84 6.016527 GGACAAGATTTCCGTTCTAACCTTTT 60.017 38.462 0.00 0.00 0.00 2.27
84 85 5.472478 GGACAAGATTTCCGTTCTAACCTTT 59.528 40.000 0.00 0.00 0.00 3.11
86 87 4.286291 AGGACAAGATTTCCGTTCTAACCT 59.714 41.667 0.00 0.00 38.29 3.50
87 88 4.576879 AGGACAAGATTTCCGTTCTAACC 58.423 43.478 0.00 0.00 38.29 2.85
88 89 5.121925 GGAAGGACAAGATTTCCGTTCTAAC 59.878 44.000 0.00 0.00 38.29 2.34
91 92 3.328050 AGGAAGGACAAGATTTCCGTTCT 59.672 43.478 0.00 0.00 44.00 3.01
92 93 3.437049 CAGGAAGGACAAGATTTCCGTTC 59.563 47.826 0.00 0.00 44.00 3.95
93 94 3.412386 CAGGAAGGACAAGATTTCCGTT 58.588 45.455 0.00 0.00 44.00 4.44
94 95 2.876079 GCAGGAAGGACAAGATTTCCGT 60.876 50.000 0.00 0.00 44.00 4.69
95 96 1.740025 GCAGGAAGGACAAGATTTCCG 59.260 52.381 0.00 0.00 44.00 4.30
96 97 2.489722 GTGCAGGAAGGACAAGATTTCC 59.510 50.000 0.00 0.00 40.52 3.13
97 98 2.160417 CGTGCAGGAAGGACAAGATTTC 59.840 50.000 0.00 0.00 38.70 2.17
98 99 2.154462 CGTGCAGGAAGGACAAGATTT 58.846 47.619 0.00 0.00 38.70 2.17
101 102 1.301716 GCGTGCAGGAAGGACAAGA 60.302 57.895 11.29 0.00 38.70 3.02
102 103 1.597854 TGCGTGCAGGAAGGACAAG 60.598 57.895 11.29 0.00 38.70 3.16
103 104 1.891919 GTGCGTGCAGGAAGGACAA 60.892 57.895 11.29 0.00 38.70 3.18
104 105 2.280797 GTGCGTGCAGGAAGGACA 60.281 61.111 11.29 0.00 38.70 4.02
105 106 3.414700 CGTGCGTGCAGGAAGGAC 61.415 66.667 11.29 1.84 34.13 3.85
115 116 2.249309 CCAAGTCTTGCGTGCGTG 59.751 61.111 7.09 0.00 0.00 5.34
117 118 3.726517 CCCCAAGTCTTGCGTGCG 61.727 66.667 7.09 0.00 0.00 5.34
118 119 4.043200 GCCCCAAGTCTTGCGTGC 62.043 66.667 7.09 5.41 0.00 5.34
119 120 2.192861 TTGCCCCAAGTCTTGCGTG 61.193 57.895 7.09 0.00 0.00 5.34
120 121 2.193536 GTTGCCCCAAGTCTTGCGT 61.194 57.895 7.09 0.00 0.00 5.24
121 122 2.192861 TGTTGCCCCAAGTCTTGCG 61.193 57.895 7.09 0.00 0.00 4.85
122 123 1.363807 GTGTTGCCCCAAGTCTTGC 59.636 57.895 7.09 0.00 0.00 4.01
123 124 1.654220 CGTGTTGCCCCAAGTCTTG 59.346 57.895 5.53 5.53 0.00 3.02
125 126 2.113139 CCGTGTTGCCCCAAGTCT 59.887 61.111 0.00 0.00 0.00 3.24
126 127 2.203294 ACCGTGTTGCCCCAAGTC 60.203 61.111 0.00 0.00 0.00 3.01
128 129 3.294493 CCACCGTGTTGCCCCAAG 61.294 66.667 0.00 0.00 0.00 3.61
133 134 3.964875 CAGTGCCACCGTGTTGCC 61.965 66.667 0.00 0.00 0.00 4.52
134 135 4.629115 GCAGTGCCACCGTGTTGC 62.629 66.667 2.85 0.00 0.00 4.17
135 136 1.568612 CTAGCAGTGCCACCGTGTTG 61.569 60.000 12.58 0.00 0.00 3.33
138 139 1.738099 GTCTAGCAGTGCCACCGTG 60.738 63.158 12.58 0.00 0.00 4.94
139 140 2.657237 GTCTAGCAGTGCCACCGT 59.343 61.111 12.58 0.00 0.00 4.83
140 141 2.125512 GGTCTAGCAGTGCCACCG 60.126 66.667 12.58 0.00 0.00 4.94
142 143 1.738099 CACGGTCTAGCAGTGCCAC 60.738 63.158 12.58 6.19 36.57 5.01
143 144 2.656646 CACGGTCTAGCAGTGCCA 59.343 61.111 12.58 0.00 36.57 4.92
144 145 2.125512 CCACGGTCTAGCAGTGCC 60.126 66.667 12.58 0.00 41.05 5.01
146 147 1.204704 TCATTCCACGGTCTAGCAGTG 59.795 52.381 9.34 9.34 41.85 3.66
151 152 2.100197 TGAGGTCATTCCACGGTCTAG 58.900 52.381 0.00 0.00 39.02 2.43
153 154 1.208052 CATGAGGTCATTCCACGGTCT 59.792 52.381 0.00 0.00 39.02 3.85
154 155 1.656652 CATGAGGTCATTCCACGGTC 58.343 55.000 0.00 0.00 39.02 4.79
155 156 0.392998 GCATGAGGTCATTCCACGGT 60.393 55.000 0.00 0.00 39.02 4.83
177 178 3.187700 AGTCCGTACGAATCAAAGATGC 58.812 45.455 18.76 0.00 0.00 3.91
196 197 4.038522 CACTGCTATGCTACCAGTATGAGT 59.961 45.833 0.00 0.00 39.69 3.41
325 4218 8.210265 GGATTATTTAATTCCAAAATGCTGGGA 58.790 33.333 0.00 0.00 37.06 4.37
331 4224 9.248291 CACTCGGGATTATTTAATTCCAAAATG 57.752 33.333 8.12 0.00 40.71 2.32
332 4225 9.196139 TCACTCGGGATTATTTAATTCCAAAAT 57.804 29.630 8.12 0.00 40.71 1.82
334 4227 8.582657 TTCACTCGGGATTATTTAATTCCAAA 57.417 30.769 8.12 0.00 40.71 3.28
349 4669 1.840737 CTTCTCTCCTTCACTCGGGA 58.159 55.000 0.00 0.00 0.00 5.14
351 4671 0.179150 CGCTTCTCTCCTTCACTCGG 60.179 60.000 0.00 0.00 0.00 4.63
352 4672 0.179150 CCGCTTCTCTCCTTCACTCG 60.179 60.000 0.00 0.00 0.00 4.18
353 4673 0.174617 CCCGCTTCTCTCCTTCACTC 59.825 60.000 0.00 0.00 0.00 3.51
354 4674 0.251832 TCCCGCTTCTCTCCTTCACT 60.252 55.000 0.00 0.00 0.00 3.41
355 4675 0.608640 TTCCCGCTTCTCTCCTTCAC 59.391 55.000 0.00 0.00 0.00 3.18
356 4676 1.002087 GTTTCCCGCTTCTCTCCTTCA 59.998 52.381 0.00 0.00 0.00 3.02
357 4677 1.276705 AGTTTCCCGCTTCTCTCCTTC 59.723 52.381 0.00 0.00 0.00 3.46
358 4678 1.353091 AGTTTCCCGCTTCTCTCCTT 58.647 50.000 0.00 0.00 0.00 3.36
359 4679 2.104170 CTAGTTTCCCGCTTCTCTCCT 58.896 52.381 0.00 0.00 0.00 3.69
360 4680 1.471851 GCTAGTTTCCCGCTTCTCTCC 60.472 57.143 0.00 0.00 0.00 3.71
364 4684 2.427812 GAGTAGCTAGTTTCCCGCTTCT 59.572 50.000 1.78 0.00 34.71 2.85
367 4687 1.848652 TGAGTAGCTAGTTTCCCGCT 58.151 50.000 1.78 0.00 37.77 5.52
377 4697 4.831155 AGTACACACCACTTTGAGTAGCTA 59.169 41.667 0.00 0.00 0.00 3.32
390 4710 5.359009 GGCTCACTAATACTAGTACACACCA 59.641 44.000 4.31 0.00 36.14 4.17
395 4715 7.117397 ACTCAAGGCTCACTAATACTAGTACA 58.883 38.462 4.31 0.00 36.14 2.90
400 4720 8.534954 ACATTACTCAAGGCTCACTAATACTA 57.465 34.615 0.00 0.00 0.00 1.82
404 4724 7.343316 ACTCTACATTACTCAAGGCTCACTAAT 59.657 37.037 0.00 0.00 0.00 1.73
405 4725 6.663953 ACTCTACATTACTCAAGGCTCACTAA 59.336 38.462 0.00 0.00 0.00 2.24
406 4726 6.188407 ACTCTACATTACTCAAGGCTCACTA 58.812 40.000 0.00 0.00 0.00 2.74
407 4727 5.020132 ACTCTACATTACTCAAGGCTCACT 58.980 41.667 0.00 0.00 0.00 3.41
408 4728 5.331876 ACTCTACATTACTCAAGGCTCAC 57.668 43.478 0.00 0.00 0.00 3.51
410 4730 9.465985 GTAAATACTCTACATTACTCAAGGCTC 57.534 37.037 0.00 0.00 0.00 4.70
411 4731 8.136165 CGTAAATACTCTACATTACTCAAGGCT 58.864 37.037 0.00 0.00 0.00 4.58
420 4740 8.223769 GCGCTAGTACGTAAATACTCTACATTA 58.776 37.037 0.00 0.00 36.74 1.90
421 4741 7.041508 AGCGCTAGTACGTAAATACTCTACATT 60.042 37.037 8.99 0.00 36.74 2.71
422 4742 6.426328 AGCGCTAGTACGTAAATACTCTACAT 59.574 38.462 8.99 0.00 36.74 2.29
423 4743 5.755375 AGCGCTAGTACGTAAATACTCTACA 59.245 40.000 8.99 0.00 36.74 2.74
424 4744 6.070196 CAGCGCTAGTACGTAAATACTCTAC 58.930 44.000 10.99 0.00 36.74 2.59
425 4745 5.333645 GCAGCGCTAGTACGTAAATACTCTA 60.334 44.000 10.99 0.00 36.74 2.43
426 4746 4.554330 GCAGCGCTAGTACGTAAATACTCT 60.554 45.833 10.99 0.00 36.74 3.24
427 4747 3.663105 GCAGCGCTAGTACGTAAATACTC 59.337 47.826 10.99 0.00 36.74 2.59
428 4748 3.549625 GGCAGCGCTAGTACGTAAATACT 60.550 47.826 10.99 0.00 38.89 2.12
429 4749 2.723143 GGCAGCGCTAGTACGTAAATAC 59.277 50.000 10.99 0.00 34.88 1.89
430 4750 2.358582 TGGCAGCGCTAGTACGTAAATA 59.641 45.455 10.99 0.00 34.88 1.40
431 4751 1.135527 TGGCAGCGCTAGTACGTAAAT 59.864 47.619 10.99 0.00 34.88 1.40
432 4752 0.527113 TGGCAGCGCTAGTACGTAAA 59.473 50.000 10.99 0.00 34.88 2.01
433 4753 0.179156 GTGGCAGCGCTAGTACGTAA 60.179 55.000 10.99 0.00 34.88 3.18
520 4840 2.248280 TGGCGAAAGAAACAGTGCTA 57.752 45.000 0.00 0.00 0.00 3.49
523 4843 4.670221 GCTCTTATGGCGAAAGAAACAGTG 60.670 45.833 3.38 0.00 32.77 3.66
525 4845 4.008539 GCTCTTATGGCGAAAGAAACAG 57.991 45.455 3.38 0.00 32.77 3.16
596 4916 1.131126 CTCGTTCACATGGCAATGTCC 59.869 52.381 2.90 0.00 45.50 4.02
681 5009 4.473199 GTGAAAGGAATACTGGCGTTTTC 58.527 43.478 4.88 4.88 32.44 2.29
682 5010 3.254903 GGTGAAAGGAATACTGGCGTTTT 59.745 43.478 0.00 0.00 0.00 2.43
693 5021 6.295292 GGTTTTGCTTCTATGGTGAAAGGAAT 60.295 38.462 0.00 0.00 0.00 3.01
762 5090 2.045536 CCAAGTGGGAGCTGAGGC 60.046 66.667 0.00 0.00 40.01 4.70
829 5203 1.464189 CGAGCGCTGCTTTTAAAGACC 60.464 52.381 18.48 0.00 39.88 3.85
873 5247 3.719883 CTCTCTGCCCTGCTCTGCG 62.720 68.421 0.00 0.00 0.00 5.18
874 5248 2.187424 CTCTCTGCCCTGCTCTGC 59.813 66.667 0.00 0.00 0.00 4.26
875 5249 1.678598 CTCCTCTCTGCCCTGCTCTG 61.679 65.000 0.00 0.00 0.00 3.35
876 5250 1.381599 CTCCTCTCTGCCCTGCTCT 60.382 63.158 0.00 0.00 0.00 4.09
877 5251 1.381056 TCTCCTCTCTGCCCTGCTC 60.381 63.158 0.00 0.00 0.00 4.26
878 5252 1.381599 CTCTCCTCTCTGCCCTGCT 60.382 63.158 0.00 0.00 0.00 4.24
879 5253 2.433994 CCTCTCCTCTCTGCCCTGC 61.434 68.421 0.00 0.00 0.00 4.85
880 5254 1.001503 ACCTCTCCTCTCTGCCCTG 59.998 63.158 0.00 0.00 0.00 4.45
881 5255 1.001503 CACCTCTCCTCTCTGCCCT 59.998 63.158 0.00 0.00 0.00 5.19
936 5310 1.807573 GAAGAACCGGAGCAGAGCG 60.808 63.158 9.46 0.00 0.00 5.03
1040 5416 4.399395 TGCGGAGAAGCAGGCCAG 62.399 66.667 5.01 0.00 42.92 4.85
1255 5634 0.899019 ACAATGCCATGCAATGCAGA 59.101 45.000 14.98 0.00 42.49 4.26
1265 5644 0.457035 GCCATCGAACACAATGCCAT 59.543 50.000 0.00 0.00 0.00 4.40
1267 5646 0.179156 CAGCCATCGAACACAATGCC 60.179 55.000 0.00 0.00 0.00 4.40
1270 5649 2.183478 TGTCAGCCATCGAACACAAT 57.817 45.000 0.00 0.00 0.00 2.71
1271 5650 1.805943 CATGTCAGCCATCGAACACAA 59.194 47.619 0.00 0.00 0.00 3.33
1272 5651 1.441738 CATGTCAGCCATCGAACACA 58.558 50.000 0.00 0.00 0.00 3.72
1273 5652 0.097674 GCATGTCAGCCATCGAACAC 59.902 55.000 0.00 0.00 0.00 3.32
1274 5653 0.036105 AGCATGTCAGCCATCGAACA 60.036 50.000 0.00 0.00 34.23 3.18
1279 5658 1.453379 AGCCAGCATGTCAGCCATC 60.453 57.895 0.00 0.00 34.23 3.51
1292 5671 0.825010 ACCTGAAAACAGCCAGCCAG 60.825 55.000 0.00 0.00 0.00 4.85
1324 5707 4.241999 CCGGCGTCGTAGTACCCG 62.242 72.222 9.28 8.31 38.71 5.28
1528 5911 1.234821 TCAATCAACAGTGCCGGAAC 58.765 50.000 5.05 4.25 0.00 3.62
1542 5925 0.757935 ACCAGCCCCATGCATCAATC 60.758 55.000 0.00 0.00 44.83 2.67
1558 5949 3.758973 TTTGCGGCGAGGAACACCA 62.759 57.895 12.98 0.00 0.00 4.17
1563 5954 0.249953 TTGTACTTTGCGGCGAGGAA 60.250 50.000 12.98 0.00 0.00 3.36
1845 6242 0.034896 GGTGTGTAGACAGTGGGGTG 59.965 60.000 0.00 0.00 30.74 4.61
1846 6243 0.399376 TGGTGTGTAGACAGTGGGGT 60.399 55.000 0.00 0.00 30.74 4.95
1847 6244 0.034896 GTGGTGTGTAGACAGTGGGG 59.965 60.000 0.00 0.00 30.74 4.96
1849 6246 2.612972 GGATGTGGTGTGTAGACAGTGG 60.613 54.545 0.00 0.00 30.74 4.00
1851 6248 2.037251 GTGGATGTGGTGTGTAGACAGT 59.963 50.000 0.00 0.00 30.74 3.55
1857 6258 0.759959 AACGGTGGATGTGGTGTGTA 59.240 50.000 0.00 0.00 0.00 2.90
1874 6275 0.886563 AAAGATGCAGCAGAGGCAAC 59.113 50.000 4.07 0.00 45.60 4.17
1907 6323 1.210931 CTCGAACACCTACGCGGAA 59.789 57.895 12.47 0.00 36.31 4.30
1996 6412 1.002087 CCAATACCTGGTATCCGGAGC 59.998 57.143 22.17 5.15 40.78 4.70
2013 6429 3.888460 TGCAGCAGCTGGGACCAA 61.888 61.111 24.13 0.00 42.74 3.67
2014 6430 4.648626 GTGCAGCAGCTGGGACCA 62.649 66.667 24.13 10.32 42.74 4.02
2169 6586 2.750637 GGCACGAGACGAGAGGGA 60.751 66.667 0.00 0.00 0.00 4.20
2195 6619 2.819608 CGATTCATTTATCGGGCCCATT 59.180 45.455 24.92 11.03 42.73 3.16
2196 6620 2.039746 TCGATTCATTTATCGGGCCCAT 59.960 45.455 24.92 16.76 45.61 4.00
2201 6633 3.494626 CCTGTGTCGATTCATTTATCGGG 59.505 47.826 6.22 0.00 45.61 5.14
2207 6639 3.254060 CTCGTCCTGTGTCGATTCATTT 58.746 45.455 0.00 0.00 35.57 2.32
2215 6647 1.923227 TAGCAGCTCGTCCTGTGTCG 61.923 60.000 0.00 0.00 35.28 4.35
2216 6648 0.457851 ATAGCAGCTCGTCCTGTGTC 59.542 55.000 0.00 0.00 35.28 3.67
2218 6650 0.529337 CCATAGCAGCTCGTCCTGTG 60.529 60.000 0.00 0.00 35.28 3.66
2261 6701 1.516423 GTAGACGGGGCTCTTGGTC 59.484 63.158 0.00 0.00 0.00 4.02
2689 7133 4.639334 ACGATGATGGATTGATGGAGAAG 58.361 43.478 0.00 0.00 0.00 2.85
2690 7134 4.635223 GACGATGATGGATTGATGGAGAA 58.365 43.478 0.00 0.00 0.00 2.87
2710 7154 1.319010 CTGTTGACGACGACGACGAC 61.319 60.000 25.15 19.21 44.28 4.34
2711 7155 1.083209 CTGTTGACGACGACGACGA 60.083 57.895 25.15 4.80 42.66 4.20
2712 7156 2.694615 GCTGTTGACGACGACGACG 61.695 63.158 17.60 17.60 42.66 5.12
2736 7180 0.831307 ATGATCTGCTCTGCTCTGCA 59.169 50.000 0.00 0.00 36.92 4.41
2760 7204 4.154195 CCTACAGGAATGAGAAACAAACGG 59.846 45.833 0.00 0.00 37.39 4.44
2914 7358 3.050275 GTGAACCCCTGCGAGCAC 61.050 66.667 0.00 0.00 0.00 4.40
3085 7529 2.707849 GGAGGAGTGCGCGAGGTAA 61.708 63.158 12.10 0.00 0.00 2.85
3115 7559 3.643792 CTCATCTCGGGACCCTAGATTTT 59.356 47.826 22.16 3.05 0.00 1.82
3116 7560 3.117093 TCTCATCTCGGGACCCTAGATTT 60.117 47.826 22.16 3.76 0.00 2.17
3117 7561 2.447429 TCTCATCTCGGGACCCTAGATT 59.553 50.000 22.16 7.75 0.00 2.40
3118 7562 2.066592 TCTCATCTCGGGACCCTAGAT 58.933 52.381 19.64 19.64 0.00 1.98
3119 7563 1.519498 TCTCATCTCGGGACCCTAGA 58.481 55.000 16.75 16.75 0.00 2.43
3120 7564 2.595750 ATCTCATCTCGGGACCCTAG 57.404 55.000 9.41 7.43 0.00 3.02
3121 7565 2.447429 AGAATCTCATCTCGGGACCCTA 59.553 50.000 9.41 0.00 0.00 3.53
3122 7566 1.219213 AGAATCTCATCTCGGGACCCT 59.781 52.381 9.41 0.00 0.00 4.34
3130 7586 3.791245 AGGCAACGAAGAATCTCATCTC 58.209 45.455 0.00 0.00 46.39 2.75
3164 7620 5.065090 CACTTCACGGCAATCAATTAGATCA 59.935 40.000 0.00 0.00 35.39 2.92
3198 7654 2.595463 GCTTGCACTGCACTGGGA 60.595 61.111 2.26 0.00 38.71 4.37
3201 7657 0.925466 GTTTTGCTTGCACTGCACTG 59.075 50.000 12.45 0.98 38.71 3.66
3202 7658 0.531657 TGTTTTGCTTGCACTGCACT 59.468 45.000 12.45 0.00 38.71 4.40
3203 7659 1.325338 CTTGTTTTGCTTGCACTGCAC 59.675 47.619 12.45 3.65 38.71 4.57
3204 7660 1.642728 CTTGTTTTGCTTGCACTGCA 58.357 45.000 9.23 9.23 38.80 4.41
3205 7661 0.932399 CCTTGTTTTGCTTGCACTGC 59.068 50.000 4.10 4.10 0.00 4.40
3235 7691 5.297569 AGGATAAATCAAGACCCACTAGC 57.702 43.478 0.00 0.00 0.00 3.42
3276 7732 3.832615 ACTCAACGGAACACCTAAAGT 57.167 42.857 0.00 0.00 0.00 2.66
3334 7790 1.536072 CGACGGCAGCAGTACATACAT 60.536 52.381 0.00 0.00 0.00 2.29
3335 7791 0.179148 CGACGGCAGCAGTACATACA 60.179 55.000 0.00 0.00 0.00 2.29
3336 7792 0.179145 ACGACGGCAGCAGTACATAC 60.179 55.000 0.00 0.00 0.00 2.39
3337 7793 0.528924 AACGACGGCAGCAGTACATA 59.471 50.000 0.00 0.00 0.00 2.29
3400 7857 0.400213 ACCGGCCAGTTGATTTCAGA 59.600 50.000 0.00 0.00 0.00 3.27
3401 7858 1.247567 AACCGGCCAGTTGATTTCAG 58.752 50.000 2.78 0.00 0.00 3.02
3402 7859 3.430473 AACCGGCCAGTTGATTTCA 57.570 47.368 2.78 0.00 0.00 2.69
3449 7917 4.829064 TTACAGTGCAACAGACCAAATC 57.171 40.909 0.00 0.00 41.43 2.17
3469 7937 4.891992 ACCTCTAGTGTGTGTATGCTTT 57.108 40.909 0.00 0.00 0.00 3.51
3567 8048 2.243407 CTCTCGTCTGTTAAGCGTCAC 58.757 52.381 0.00 0.00 0.00 3.67
3568 8049 1.878088 ACTCTCGTCTGTTAAGCGTCA 59.122 47.619 0.00 0.00 0.00 4.35
3569 8050 2.615489 ACTCTCGTCTGTTAAGCGTC 57.385 50.000 0.00 0.00 0.00 5.19
3572 8053 2.442424 CGCTACTCTCGTCTGTTAAGC 58.558 52.381 0.00 0.00 0.00 3.09
3581 8062 3.450115 GGTGGGCGCTACTCTCGT 61.450 66.667 7.64 0.00 0.00 4.18
3582 8063 4.554363 CGGTGGGCGCTACTCTCG 62.554 72.222 7.64 2.92 0.00 4.04
3592 8073 2.671963 GTTGTCTTCCCGGTGGGC 60.672 66.667 0.00 0.00 43.94 5.36
3593 8074 1.149627 TTGTTGTCTTCCCGGTGGG 59.850 57.895 0.00 0.00 46.11 4.61
3594 8075 1.170290 GGTTGTTGTCTTCCCGGTGG 61.170 60.000 0.00 0.00 0.00 4.61
3600 8081 4.335594 GGCTATGTATGGTTGTTGTCTTCC 59.664 45.833 0.00 0.00 0.00 3.46
3641 8122 0.314935 TTCGGTTGTACACCTCGTCC 59.685 55.000 0.00 0.00 44.69 4.79
3642 8123 2.358939 ATTCGGTTGTACACCTCGTC 57.641 50.000 0.00 0.00 44.69 4.20
3671 8152 2.760650 TCACACAAGAGATCACCGCTAT 59.239 45.455 0.00 0.00 0.00 2.97
3672 8153 2.167662 TCACACAAGAGATCACCGCTA 58.832 47.619 0.00 0.00 0.00 4.26
3730 8217 2.756760 AGCATCTACAACTGGGCAATTG 59.243 45.455 0.00 0.00 0.00 2.32
3765 8252 9.463443 AGTATTAAAAGAAAATGAATATGGCGC 57.537 29.630 0.00 0.00 0.00 6.53
3800 8287 8.912988 TGTCAAACCTTGATCTTAAATTGAACT 58.087 29.630 0.00 0.00 42.47 3.01
3801 8288 8.968242 GTGTCAAACCTTGATCTTAAATTGAAC 58.032 33.333 0.00 0.00 42.47 3.18
3802 8289 8.690884 TGTGTCAAACCTTGATCTTAAATTGAA 58.309 29.630 0.00 0.00 42.47 2.69
3803 8290 8.231692 TGTGTCAAACCTTGATCTTAAATTGA 57.768 30.769 0.00 0.00 42.47 2.57
3804 8291 8.870160 TTGTGTCAAACCTTGATCTTAAATTG 57.130 30.769 0.00 0.00 42.47 2.32
3805 8292 9.883142 TTTTGTGTCAAACCTTGATCTTAAATT 57.117 25.926 0.00 0.00 42.47 1.82
3808 8295 9.959749 GTATTTTGTGTCAAACCTTGATCTTAA 57.040 29.630 0.00 0.00 42.47 1.85
3809 8296 8.286800 CGTATTTTGTGTCAAACCTTGATCTTA 58.713 33.333 0.00 0.00 42.47 2.10
3810 8297 7.012894 TCGTATTTTGTGTCAAACCTTGATCTT 59.987 33.333 0.00 0.00 42.47 2.40
3811 8298 6.485313 TCGTATTTTGTGTCAAACCTTGATCT 59.515 34.615 0.00 0.00 42.47 2.75
3812 8299 6.664515 TCGTATTTTGTGTCAAACCTTGATC 58.335 36.000 0.00 0.00 42.47 2.92
3813 8300 6.627395 TCGTATTTTGTGTCAAACCTTGAT 57.373 33.333 0.00 0.00 42.47 2.57
3814 8301 6.316640 TCTTCGTATTTTGTGTCAAACCTTGA 59.683 34.615 0.00 0.00 37.33 3.02
3815 8302 6.491394 TCTTCGTATTTTGTGTCAAACCTTG 58.509 36.000 0.00 0.00 0.00 3.61
3816 8303 6.238648 CCTCTTCGTATTTTGTGTCAAACCTT 60.239 38.462 0.00 0.00 0.00 3.50
3817 8304 5.238650 CCTCTTCGTATTTTGTGTCAAACCT 59.761 40.000 0.00 0.00 0.00 3.50
3818 8305 5.237779 TCCTCTTCGTATTTTGTGTCAAACC 59.762 40.000 0.00 0.00 0.00 3.27
3819 8306 6.134061 GTCCTCTTCGTATTTTGTGTCAAAC 58.866 40.000 0.00 0.00 0.00 2.93
3820 8307 5.237779 GGTCCTCTTCGTATTTTGTGTCAAA 59.762 40.000 0.00 0.00 0.00 2.69
3821 8308 4.753107 GGTCCTCTTCGTATTTTGTGTCAA 59.247 41.667 0.00 0.00 0.00 3.18
3822 8309 4.202274 TGGTCCTCTTCGTATTTTGTGTCA 60.202 41.667 0.00 0.00 0.00 3.58
3823 8310 4.312443 TGGTCCTCTTCGTATTTTGTGTC 58.688 43.478 0.00 0.00 0.00 3.67
3824 8311 4.345859 TGGTCCTCTTCGTATTTTGTGT 57.654 40.909 0.00 0.00 0.00 3.72
3825 8312 5.880054 ATTGGTCCTCTTCGTATTTTGTG 57.120 39.130 0.00 0.00 0.00 3.33
3826 8313 7.094506 GGTTTATTGGTCCTCTTCGTATTTTGT 60.095 37.037 0.00 0.00 0.00 2.83
3827 8314 7.094549 TGGTTTATTGGTCCTCTTCGTATTTTG 60.095 37.037 0.00 0.00 0.00 2.44
3828 8315 6.943718 TGGTTTATTGGTCCTCTTCGTATTTT 59.056 34.615 0.00 0.00 0.00 1.82
3829 8316 6.478129 TGGTTTATTGGTCCTCTTCGTATTT 58.522 36.000 0.00 0.00 0.00 1.40
3830 8317 6.057321 TGGTTTATTGGTCCTCTTCGTATT 57.943 37.500 0.00 0.00 0.00 1.89
3831 8318 5.671493 CTGGTTTATTGGTCCTCTTCGTAT 58.329 41.667 0.00 0.00 0.00 3.06
3832 8319 4.622220 GCTGGTTTATTGGTCCTCTTCGTA 60.622 45.833 0.00 0.00 0.00 3.43
3833 8320 3.868754 GCTGGTTTATTGGTCCTCTTCGT 60.869 47.826 0.00 0.00 0.00 3.85
3834 8321 2.678336 GCTGGTTTATTGGTCCTCTTCG 59.322 50.000 0.00 0.00 0.00 3.79
3835 8322 3.686016 TGCTGGTTTATTGGTCCTCTTC 58.314 45.455 0.00 0.00 0.00 2.87
3836 8323 3.806949 TGCTGGTTTATTGGTCCTCTT 57.193 42.857 0.00 0.00 0.00 2.85
3837 8324 3.624777 CATGCTGGTTTATTGGTCCTCT 58.375 45.455 0.00 0.00 0.00 3.69
3838 8325 2.689983 CCATGCTGGTTTATTGGTCCTC 59.310 50.000 0.00 0.00 31.35 3.71
3839 8326 2.311542 TCCATGCTGGTTTATTGGTCCT 59.688 45.455 2.68 0.00 39.03 3.85
3840 8327 2.689983 CTCCATGCTGGTTTATTGGTCC 59.310 50.000 2.68 0.00 39.03 4.46
3841 8328 2.689983 CCTCCATGCTGGTTTATTGGTC 59.310 50.000 2.68 0.00 39.03 4.02
3842 8329 2.042979 ACCTCCATGCTGGTTTATTGGT 59.957 45.455 2.50 0.00 39.03 3.67
3843 8330 2.738743 ACCTCCATGCTGGTTTATTGG 58.261 47.619 2.50 0.00 39.03 3.16
3844 8331 4.526970 ACTACCTCCATGCTGGTTTATTG 58.473 43.478 12.11 3.28 39.03 1.90
3845 8332 4.862641 ACTACCTCCATGCTGGTTTATT 57.137 40.909 12.11 0.00 39.03 1.40
3846 8333 5.681639 GTTACTACCTCCATGCTGGTTTAT 58.318 41.667 12.11 3.24 39.03 1.40
3847 8334 4.382254 CGTTACTACCTCCATGCTGGTTTA 60.382 45.833 12.11 3.71 39.03 2.01
3848 8335 3.618997 CGTTACTACCTCCATGCTGGTTT 60.619 47.826 12.11 4.49 39.03 3.27
3849 8336 2.093658 CGTTACTACCTCCATGCTGGTT 60.094 50.000 12.11 0.36 39.03 3.67
3850 8337 1.480954 CGTTACTACCTCCATGCTGGT 59.519 52.381 11.66 11.66 39.03 4.00
3851 8338 1.480954 ACGTTACTACCTCCATGCTGG 59.519 52.381 1.31 1.31 39.43 4.85
3852 8339 2.961526 ACGTTACTACCTCCATGCTG 57.038 50.000 0.00 0.00 0.00 4.41
3853 8340 2.357009 CGTACGTTACTACCTCCATGCT 59.643 50.000 7.22 0.00 0.00 3.79
3854 8341 2.098117 ACGTACGTTACTACCTCCATGC 59.902 50.000 16.72 0.00 0.00 4.06
3855 8342 5.679734 ATACGTACGTTACTACCTCCATG 57.320 43.478 27.92 0.00 0.00 3.66
3856 8343 6.992715 AGTTATACGTACGTTACTACCTCCAT 59.007 38.462 27.92 11.92 0.00 3.41
3857 8344 6.346096 AGTTATACGTACGTTACTACCTCCA 58.654 40.000 27.92 4.23 0.00 3.86
3858 8345 6.846325 AGTTATACGTACGTTACTACCTCC 57.154 41.667 27.92 5.39 0.00 4.30
3868 8355 9.542462 TCCTGTTAGTTATAGTTATACGTACGT 57.458 33.333 25.98 25.98 0.00 3.57
3880 8367 8.930760 GCTATGAGCAAATCCTGTTAGTTATAG 58.069 37.037 0.00 0.00 41.89 1.31
3898 8385 9.787532 TTTTTATTATTTCAGTGTGCTATGAGC 57.212 29.630 0.00 0.00 42.82 4.26
3923 8565 5.010708 ACATTTGGGGTAGTCTGGATTTT 57.989 39.130 0.00 0.00 0.00 1.82
3924 8566 4.600062 GACATTTGGGGTAGTCTGGATTT 58.400 43.478 0.00 0.00 0.00 2.17
3925 8567 3.370527 CGACATTTGGGGTAGTCTGGATT 60.371 47.826 0.00 0.00 0.00 3.01
3926 8568 2.170607 CGACATTTGGGGTAGTCTGGAT 59.829 50.000 0.00 0.00 0.00 3.41
3927 8569 1.553248 CGACATTTGGGGTAGTCTGGA 59.447 52.381 0.00 0.00 0.00 3.86
3928 8570 1.278127 ACGACATTTGGGGTAGTCTGG 59.722 52.381 0.00 0.00 0.00 3.86
3930 8572 2.028385 GTCACGACATTTGGGGTAGTCT 60.028 50.000 0.00 0.00 0.00 3.24
3931 8573 2.344025 GTCACGACATTTGGGGTAGTC 58.656 52.381 0.00 0.00 0.00 2.59
3932 8574 1.002773 GGTCACGACATTTGGGGTAGT 59.997 52.381 0.00 0.00 0.00 2.73
3936 8578 0.250727 ACAGGTCACGACATTTGGGG 60.251 55.000 0.00 0.00 0.00 4.96
3946 8588 0.447011 GGACGTCTAGACAGGTCACG 59.553 60.000 23.80 12.84 34.18 4.35
3948 8590 2.281539 TTGGACGTCTAGACAGGTCA 57.718 50.000 23.80 14.01 0.00 4.02
3953 8595 2.960384 TGGAGTTTTGGACGTCTAGACA 59.040 45.455 22.37 1.36 0.00 3.41
3954 8596 3.243636 TGTGGAGTTTTGGACGTCTAGAC 60.244 47.826 16.46 13.18 0.00 2.59
3958 8600 2.702592 TTGTGGAGTTTTGGACGTCT 57.297 45.000 16.46 0.00 0.00 4.18
3973 8615 0.387565 CCCTTGGGTTCGGTTTTGTG 59.612 55.000 0.00 0.00 0.00 3.33
3987 8629 1.215423 CTCCCCCAAATCTACCCCTTG 59.785 57.143 0.00 0.00 0.00 3.61
3990 8632 0.844660 GACTCCCCCAAATCTACCCC 59.155 60.000 0.00 0.00 0.00 4.95
3994 8636 2.257391 TTCGGACTCCCCCAAATCTA 57.743 50.000 0.00 0.00 0.00 1.98
4011 8654 4.265556 CAGAGTCCGACATGACGTATTTTC 59.734 45.833 15.98 6.73 40.26 2.29
4012 8655 4.174009 CAGAGTCCGACATGACGTATTTT 58.826 43.478 15.98 0.00 40.26 1.82
4020 8663 0.888619 GGTGACAGAGTCCGACATGA 59.111 55.000 0.00 0.00 0.00 3.07
4033 8676 3.897122 GGTGGGCCAAGGGTGACA 61.897 66.667 8.40 0.00 34.09 3.58
4057 8700 1.882623 GTTTTTGGGTGAGAGAGCAGG 59.117 52.381 0.00 0.00 0.00 4.85
4059 8702 1.478654 GGGTTTTTGGGTGAGAGAGCA 60.479 52.381 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.