Multiple sequence alignment - TraesCS1B01G376700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G376700 chr1B 100.000 2411 0 0 1 2411 608463890 608461480 0.000000e+00 4453
1 TraesCS1B01G376700 chr1B 84.024 1496 145 56 706 2151 611131192 611132643 0.000000e+00 1352
2 TraesCS1B01G376700 chr1B 86.762 982 67 31 706 1679 610965304 610966230 0.000000e+00 1035
3 TraesCS1B01G376700 chr1B 85.730 897 66 30 706 1574 606839639 606840501 0.000000e+00 891
4 TraesCS1B01G376700 chr1B 87.795 254 27 4 2002 2254 494552412 494552162 6.520000e-76 294
5 TraesCS1B01G376700 chr1D 85.252 1329 116 39 362 1656 445387590 445386308 0.000000e+00 1295
6 TraesCS1B01G376700 chr1D 93.562 699 34 9 721 1410 446436822 446437518 0.000000e+00 1031
7 TraesCS1B01G376700 chr1D 85.222 1015 92 30 706 1679 446558191 446559188 0.000000e+00 990
8 TraesCS1B01G376700 chr1D 87.458 885 55 28 707 1574 445317316 445318161 0.000000e+00 968
9 TraesCS1B01G376700 chr1D 79.685 571 59 25 1839 2367 446559344 446559899 2.280000e-95 359
10 TraesCS1B01G376700 chr1D 89.268 205 15 4 2213 2411 445318751 445318954 1.430000e-62 250
11 TraesCS1B01G376700 chr1A 85.781 1294 96 53 706 1943 542358199 542359460 0.000000e+00 1290
12 TraesCS1B01G376700 chr1A 89.300 972 68 17 721 1657 542170093 542171063 0.000000e+00 1186
13 TraesCS1B01G376700 chr1A 85.312 1171 91 49 462 1574 541380829 541381976 0.000000e+00 1134
14 TraesCS1B01G376700 chr1A 91.509 742 54 8 678 1416 541463670 541462935 0.000000e+00 1013
15 TraesCS1B01G376700 chr1A 85.246 305 28 10 1963 2254 531920265 531920565 5.040000e-77 298
16 TraesCS1B01G376700 chr1A 84.828 145 16 5 362 504 541464017 541463877 8.990000e-30 141
17 TraesCS1B01G376700 chr2B 94.073 523 26 4 895 1416 161026367 161026885 0.000000e+00 789
18 TraesCS1B01G376700 chr2B 84.431 167 21 5 1834 1995 726407099 726407265 2.480000e-35 159
19 TraesCS1B01G376700 chr3D 92.182 550 34 8 874 1420 114883226 114882683 0.000000e+00 769
20 TraesCS1B01G376700 chr3B 89.558 249 22 4 2007 2254 729775710 729775465 1.800000e-81 313
21 TraesCS1B01G376700 chr3A 88.976 254 24 4 2002 2254 722491912 722491662 6.470000e-81 311
22 TraesCS1B01G376700 chr3A 86.047 215 16 3 1376 1577 722492543 722492330 4.040000e-53 219
23 TraesCS1B01G376700 chr7B 89.157 249 23 4 2007 2254 688751649 688751894 8.370000e-80 307
24 TraesCS1B01G376700 chr7B 86.585 164 17 5 1837 1995 603522112 603521949 2.460000e-40 176
25 TraesCS1B01G376700 chr7B 85.629 167 19 5 1834 1995 469018021 469018187 1.150000e-38 171
26 TraesCS1B01G376700 chr4B 88.583 254 25 4 2002 2254 317668873 317669123 3.010000e-79 305
27 TraesCS1B01G376700 chr2A 88.583 254 25 4 2002 2254 630863370 630863120 3.010000e-79 305
28 TraesCS1B01G376700 chr2A 85.366 164 19 5 1837 1995 24792393 24792230 5.330000e-37 165
29 TraesCS1B01G376700 chr2A 84.615 169 19 6 1834 1995 644823280 644823448 6.900000e-36 161
30 TraesCS1B01G376700 chr4A 89.024 246 22 5 2002 2245 674317584 674317826 1.400000e-77 300
31 TraesCS1B01G376700 chr5B 85.149 303 30 6 1964 2254 667130846 667130547 1.810000e-76 296
32 TraesCS1B01G376700 chr5B 85.976 164 18 5 1837 1995 10091027 10090864 1.150000e-38 171
33 TraesCS1B01G376700 chr7D 88.626 211 11 6 1376 1574 16676085 16676294 6.660000e-61 244
34 TraesCS1B01G376700 chr5A 86.826 167 17 5 1834 1995 131654506 131654672 5.290000e-42 182
35 TraesCS1B01G376700 chr6B 84.848 165 18 7 1837 1995 66894589 66894426 2.480000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G376700 chr1B 608461480 608463890 2410 True 4453.0 4453 100.0000 1 2411 1 chr1B.!!$R2 2410
1 TraesCS1B01G376700 chr1B 611131192 611132643 1451 False 1352.0 1352 84.0240 706 2151 1 chr1B.!!$F3 1445
2 TraesCS1B01G376700 chr1B 610965304 610966230 926 False 1035.0 1035 86.7620 706 1679 1 chr1B.!!$F2 973
3 TraesCS1B01G376700 chr1B 606839639 606840501 862 False 891.0 891 85.7300 706 1574 1 chr1B.!!$F1 868
4 TraesCS1B01G376700 chr1D 445386308 445387590 1282 True 1295.0 1295 85.2520 362 1656 1 chr1D.!!$R1 1294
5 TraesCS1B01G376700 chr1D 446436822 446437518 696 False 1031.0 1031 93.5620 721 1410 1 chr1D.!!$F1 689
6 TraesCS1B01G376700 chr1D 446558191 446559899 1708 False 674.5 990 82.4535 706 2367 2 chr1D.!!$F3 1661
7 TraesCS1B01G376700 chr1D 445317316 445318954 1638 False 609.0 968 88.3630 707 2411 2 chr1D.!!$F2 1704
8 TraesCS1B01G376700 chr1A 542358199 542359460 1261 False 1290.0 1290 85.7810 706 1943 1 chr1A.!!$F4 1237
9 TraesCS1B01G376700 chr1A 542170093 542171063 970 False 1186.0 1186 89.3000 721 1657 1 chr1A.!!$F3 936
10 TraesCS1B01G376700 chr1A 541380829 541381976 1147 False 1134.0 1134 85.3120 462 1574 1 chr1A.!!$F2 1112
11 TraesCS1B01G376700 chr1A 541462935 541464017 1082 True 577.0 1013 88.1685 362 1416 2 chr1A.!!$R1 1054
12 TraesCS1B01G376700 chr2B 161026367 161026885 518 False 789.0 789 94.0730 895 1416 1 chr2B.!!$F1 521
13 TraesCS1B01G376700 chr3D 114882683 114883226 543 True 769.0 769 92.1820 874 1420 1 chr3D.!!$R1 546
14 TraesCS1B01G376700 chr3A 722491662 722492543 881 True 265.0 311 87.5115 1376 2254 2 chr3A.!!$R1 878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
339 340 0.031449 ACAAAACCCGCATCCGTTTG 59.969 50.0 0.0 0.0 35.41 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 2027 0.104304 ACAGACGGACACACAGAACC 59.896 55.0 0.0 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.818132 CCGAGAGTGGGAGGCATC 59.182 66.667 0.00 0.00 0.00 3.91
36 37 2.060383 CCGAGAGTGGGAGGCATCA 61.060 63.158 0.00 0.00 0.00 3.07
37 38 1.406065 CCGAGAGTGGGAGGCATCAT 61.406 60.000 0.00 0.00 0.00 2.45
38 39 0.467384 CGAGAGTGGGAGGCATCATT 59.533 55.000 0.00 0.00 0.00 2.57
39 40 1.539929 CGAGAGTGGGAGGCATCATTC 60.540 57.143 0.00 0.00 0.00 2.67
40 41 0.842635 AGAGTGGGAGGCATCATTCC 59.157 55.000 0.00 0.00 0.00 3.01
45 46 3.911719 GGAGGCATCATTCCCAGTT 57.088 52.632 0.00 0.00 0.00 3.16
46 47 1.396653 GGAGGCATCATTCCCAGTTG 58.603 55.000 0.00 0.00 0.00 3.16
47 48 1.064463 GGAGGCATCATTCCCAGTTGA 60.064 52.381 0.00 0.00 0.00 3.18
48 49 2.019984 GAGGCATCATTCCCAGTTGAC 58.980 52.381 0.00 0.00 0.00 3.18
49 50 1.106285 GGCATCATTCCCAGTTGACC 58.894 55.000 0.00 0.00 0.00 4.02
50 51 1.341383 GGCATCATTCCCAGTTGACCT 60.341 52.381 0.00 0.00 0.00 3.85
51 52 2.019984 GCATCATTCCCAGTTGACCTC 58.980 52.381 0.00 0.00 0.00 3.85
52 53 2.618816 GCATCATTCCCAGTTGACCTCA 60.619 50.000 0.00 0.00 0.00 3.86
53 54 2.859165 TCATTCCCAGTTGACCTCAC 57.141 50.000 0.00 0.00 0.00 3.51
54 55 1.351017 TCATTCCCAGTTGACCTCACC 59.649 52.381 0.00 0.00 0.00 4.02
55 56 0.324943 ATTCCCAGTTGACCTCACCG 59.675 55.000 0.00 0.00 0.00 4.94
56 57 1.764571 TTCCCAGTTGACCTCACCGG 61.765 60.000 0.00 0.00 39.35 5.28
72 73 3.210528 GGTCTCGGCTCGGTCGAT 61.211 66.667 1.19 0.00 39.46 3.59
73 74 2.024871 GTCTCGGCTCGGTCGATG 59.975 66.667 1.19 0.00 39.46 3.84
74 75 2.124860 TCTCGGCTCGGTCGATGA 60.125 61.111 1.19 0.00 39.46 2.92
75 76 2.180862 TCTCGGCTCGGTCGATGAG 61.181 63.158 11.97 11.97 39.46 2.90
76 77 3.187699 CTCGGCTCGGTCGATGAGG 62.188 68.421 16.45 4.38 39.46 3.86
77 78 3.209812 CGGCTCGGTCGATGAGGA 61.210 66.667 16.45 0.00 33.99 3.71
78 79 2.556459 CGGCTCGGTCGATGAGGAT 61.556 63.158 16.45 0.00 33.99 3.24
79 80 1.006805 GGCTCGGTCGATGAGGATG 60.007 63.158 16.45 0.00 33.99 3.51
80 81 1.663074 GCTCGGTCGATGAGGATGC 60.663 63.158 16.45 2.80 33.99 3.91
81 82 1.006805 CTCGGTCGATGAGGATGCC 60.007 63.158 9.18 0.00 0.00 4.40
82 83 1.455773 TCGGTCGATGAGGATGCCT 60.456 57.895 0.00 0.00 36.03 4.75
83 84 0.179001 TCGGTCGATGAGGATGCCTA 60.179 55.000 0.00 0.00 31.76 3.93
84 85 0.242286 CGGTCGATGAGGATGCCTAG 59.758 60.000 0.00 0.00 31.76 3.02
85 86 0.605589 GGTCGATGAGGATGCCTAGG 59.394 60.000 3.67 3.67 31.76 3.02
86 87 0.605589 GTCGATGAGGATGCCTAGGG 59.394 60.000 11.72 0.00 31.76 3.53
103 104 4.440127 GCAATGTGCAAGGCGGGG 62.440 66.667 0.00 0.00 44.26 5.73
104 105 4.440127 CAATGTGCAAGGCGGGGC 62.440 66.667 0.00 0.00 0.00 5.80
119 120 4.702081 GGCGACGCGACACAGACT 62.702 66.667 15.93 0.00 33.63 3.24
120 121 2.729862 GCGACGCGACACAGACTT 60.730 61.111 15.93 0.00 0.00 3.01
121 122 2.300787 GCGACGCGACACAGACTTT 61.301 57.895 15.93 0.00 0.00 2.66
122 123 1.818221 GCGACGCGACACAGACTTTT 61.818 55.000 15.93 0.00 0.00 2.27
123 124 0.575390 CGACGCGACACAGACTTTTT 59.425 50.000 15.93 0.00 0.00 1.94
124 125 1.782569 CGACGCGACACAGACTTTTTA 59.217 47.619 15.93 0.00 0.00 1.52
125 126 2.216940 CGACGCGACACAGACTTTTTAA 59.783 45.455 15.93 0.00 0.00 1.52
126 127 3.301963 CGACGCGACACAGACTTTTTAAA 60.302 43.478 15.93 0.00 0.00 1.52
127 128 4.580528 GACGCGACACAGACTTTTTAAAA 58.419 39.130 15.93 0.00 0.00 1.52
128 129 4.972201 ACGCGACACAGACTTTTTAAAAA 58.028 34.783 15.93 12.62 0.00 1.94
158 159 7.993821 TTTAATGTTTTTCTTGTCAATGCGA 57.006 28.000 0.00 0.00 0.00 5.10
159 160 7.993821 TTAATGTTTTTCTTGTCAATGCGAA 57.006 28.000 0.00 0.00 0.00 4.70
160 161 5.888412 ATGTTTTTCTTGTCAATGCGAAC 57.112 34.783 0.00 0.00 0.00 3.95
161 162 4.992688 TGTTTTTCTTGTCAATGCGAACT 58.007 34.783 0.00 0.00 0.00 3.01
162 163 5.406649 TGTTTTTCTTGTCAATGCGAACTT 58.593 33.333 0.00 0.00 0.00 2.66
163 164 5.866633 TGTTTTTCTTGTCAATGCGAACTTT 59.133 32.000 0.00 0.00 0.00 2.66
164 165 5.947503 TTTTCTTGTCAATGCGAACTTTG 57.052 34.783 0.00 0.00 33.38 2.77
165 166 3.624326 TCTTGTCAATGCGAACTTTGG 57.376 42.857 0.00 0.00 33.04 3.28
166 167 2.053627 CTTGTCAATGCGAACTTTGGC 58.946 47.619 0.00 0.00 36.40 4.52
167 168 1.317613 TGTCAATGCGAACTTTGGCT 58.682 45.000 0.00 0.00 36.70 4.75
168 169 1.001487 TGTCAATGCGAACTTTGGCTG 60.001 47.619 0.00 0.00 36.70 4.85
169 170 0.597568 TCAATGCGAACTTTGGCTGG 59.402 50.000 0.00 0.00 33.04 4.85
170 171 1.010419 CAATGCGAACTTTGGCTGGC 61.010 55.000 0.00 0.00 32.75 4.85
171 172 1.181098 AATGCGAACTTTGGCTGGCT 61.181 50.000 2.00 0.00 32.75 4.75
172 173 1.870055 ATGCGAACTTTGGCTGGCTG 61.870 55.000 2.00 0.00 32.75 4.85
173 174 2.555547 GCGAACTTTGGCTGGCTGT 61.556 57.895 2.00 0.00 0.00 4.40
174 175 2.032981 CGAACTTTGGCTGGCTGTT 58.967 52.632 2.00 5.27 0.00 3.16
175 176 0.318107 CGAACTTTGGCTGGCTGTTG 60.318 55.000 2.00 0.00 0.00 3.33
176 177 1.032014 GAACTTTGGCTGGCTGTTGA 58.968 50.000 2.00 0.00 0.00 3.18
177 178 0.746659 AACTTTGGCTGGCTGTTGAC 59.253 50.000 2.00 0.00 0.00 3.18
178 179 1.109323 ACTTTGGCTGGCTGTTGACC 61.109 55.000 2.00 0.00 0.00 4.02
179 180 0.825010 CTTTGGCTGGCTGTTGACCT 60.825 55.000 2.00 0.00 0.00 3.85
180 181 1.108727 TTTGGCTGGCTGTTGACCTG 61.109 55.000 2.00 0.00 0.00 4.00
181 182 2.113986 GGCTGGCTGTTGACCTGT 59.886 61.111 0.00 0.00 0.00 4.00
182 183 2.263741 GGCTGGCTGTTGACCTGTG 61.264 63.158 0.00 0.00 0.00 3.66
183 184 1.526917 GCTGGCTGTTGACCTGTGT 60.527 57.895 0.00 0.00 0.00 3.72
184 185 1.103398 GCTGGCTGTTGACCTGTGTT 61.103 55.000 0.00 0.00 0.00 3.32
185 186 1.392589 CTGGCTGTTGACCTGTGTTT 58.607 50.000 0.00 0.00 0.00 2.83
186 187 1.750778 CTGGCTGTTGACCTGTGTTTT 59.249 47.619 0.00 0.00 0.00 2.43
187 188 2.166254 CTGGCTGTTGACCTGTGTTTTT 59.834 45.455 0.00 0.00 0.00 1.94
188 189 3.357203 TGGCTGTTGACCTGTGTTTTTA 58.643 40.909 0.00 0.00 0.00 1.52
189 190 3.764434 TGGCTGTTGACCTGTGTTTTTAA 59.236 39.130 0.00 0.00 0.00 1.52
190 191 4.404073 TGGCTGTTGACCTGTGTTTTTAAT 59.596 37.500 0.00 0.00 0.00 1.40
191 192 4.744631 GGCTGTTGACCTGTGTTTTTAATG 59.255 41.667 0.00 0.00 0.00 1.90
192 193 5.348164 GCTGTTGACCTGTGTTTTTAATGT 58.652 37.500 0.00 0.00 0.00 2.71
193 194 5.810074 GCTGTTGACCTGTGTTTTTAATGTT 59.190 36.000 0.00 0.00 0.00 2.71
194 195 6.312672 GCTGTTGACCTGTGTTTTTAATGTTT 59.687 34.615 0.00 0.00 0.00 2.83
195 196 7.489757 GCTGTTGACCTGTGTTTTTAATGTTTA 59.510 33.333 0.00 0.00 0.00 2.01
196 197 9.360093 CTGTTGACCTGTGTTTTTAATGTTTAA 57.640 29.630 0.00 0.00 0.00 1.52
197 198 9.877178 TGTTGACCTGTGTTTTTAATGTTTAAT 57.123 25.926 0.00 0.00 0.00 1.40
235 236 9.871238 TTTAATTATTTTTAGCCCGCATTTACA 57.129 25.926 0.00 0.00 0.00 2.41
236 237 9.522804 TTAATTATTTTTAGCCCGCATTTACAG 57.477 29.630 0.00 0.00 0.00 2.74
237 238 2.931512 TTTTAGCCCGCATTTACAGC 57.068 45.000 0.00 0.00 0.00 4.40
238 239 2.122783 TTTAGCCCGCATTTACAGCT 57.877 45.000 0.00 0.00 37.58 4.24
239 240 1.663695 TTAGCCCGCATTTACAGCTC 58.336 50.000 0.00 0.00 35.03 4.09
240 241 0.529773 TAGCCCGCATTTACAGCTCG 60.530 55.000 0.00 0.00 35.03 5.03
241 242 2.106683 GCCCGCATTTACAGCTCGT 61.107 57.895 0.00 0.00 0.00 4.18
242 243 1.715585 CCCGCATTTACAGCTCGTG 59.284 57.895 0.00 0.00 0.00 4.35
243 244 1.705337 CCCGCATTTACAGCTCGTGG 61.705 60.000 0.00 0.00 0.00 4.94
244 245 1.705337 CCGCATTTACAGCTCGTGGG 61.705 60.000 0.00 0.00 0.00 4.61
245 246 1.019278 CGCATTTACAGCTCGTGGGT 61.019 55.000 0.00 0.00 0.00 4.51
246 247 0.727398 GCATTTACAGCTCGTGGGTC 59.273 55.000 0.00 0.00 0.00 4.46
247 248 0.999406 CATTTACAGCTCGTGGGTCG 59.001 55.000 0.00 0.00 41.41 4.79
248 249 0.108329 ATTTACAGCTCGTGGGTCGG 60.108 55.000 0.00 0.00 40.32 4.79
249 250 1.180456 TTTACAGCTCGTGGGTCGGA 61.180 55.000 0.00 0.00 40.32 4.55
250 251 1.870055 TTACAGCTCGTGGGTCGGAC 61.870 60.000 0.00 0.00 40.32 4.79
251 252 4.436998 CAGCTCGTGGGTCGGACC 62.437 72.222 19.06 19.06 40.32 4.46
252 253 4.988716 AGCTCGTGGGTCGGACCA 62.989 66.667 27.32 11.77 41.02 4.02
264 265 4.073052 GGACCACCGTTTGATGCA 57.927 55.556 0.00 0.00 0.00 3.96
265 266 2.336341 GGACCACCGTTTGATGCAA 58.664 52.632 0.00 0.00 0.00 4.08
266 267 0.240945 GGACCACCGTTTGATGCAAG 59.759 55.000 0.00 0.00 0.00 4.01
267 268 0.387239 GACCACCGTTTGATGCAAGC 60.387 55.000 0.00 0.00 0.00 4.01
268 269 1.106351 ACCACCGTTTGATGCAAGCA 61.106 50.000 0.00 0.00 0.00 3.91
269 270 0.664166 CCACCGTTTGATGCAAGCAC 60.664 55.000 0.00 0.00 0.00 4.40
270 271 0.311790 CACCGTTTGATGCAAGCACT 59.688 50.000 0.00 0.00 0.00 4.40
271 272 0.311790 ACCGTTTGATGCAAGCACTG 59.688 50.000 0.00 0.00 0.00 3.66
272 273 0.592637 CCGTTTGATGCAAGCACTGA 59.407 50.000 0.00 0.00 0.00 3.41
273 274 1.664016 CCGTTTGATGCAAGCACTGAC 60.664 52.381 0.00 0.00 0.00 3.51
274 275 1.664016 CGTTTGATGCAAGCACTGACC 60.664 52.381 0.00 0.00 0.00 4.02
275 276 0.961019 TTTGATGCAAGCACTGACCC 59.039 50.000 0.00 0.00 0.00 4.46
276 277 0.178995 TTGATGCAAGCACTGACCCA 60.179 50.000 0.00 0.00 0.00 4.51
277 278 0.178995 TGATGCAAGCACTGACCCAA 60.179 50.000 0.00 0.00 0.00 4.12
278 279 0.961019 GATGCAAGCACTGACCCAAA 59.039 50.000 0.00 0.00 0.00 3.28
279 280 1.547372 GATGCAAGCACTGACCCAAAT 59.453 47.619 0.00 0.00 0.00 2.32
280 281 2.284754 TGCAAGCACTGACCCAAATA 57.715 45.000 0.00 0.00 0.00 1.40
281 282 2.591923 TGCAAGCACTGACCCAAATAA 58.408 42.857 0.00 0.00 0.00 1.40
282 283 2.961741 TGCAAGCACTGACCCAAATAAA 59.038 40.909 0.00 0.00 0.00 1.40
283 284 3.386078 TGCAAGCACTGACCCAAATAAAA 59.614 39.130 0.00 0.00 0.00 1.52
284 285 4.141846 TGCAAGCACTGACCCAAATAAAAA 60.142 37.500 0.00 0.00 0.00 1.94
300 301 3.112842 AAAAACACACGGGCGTCC 58.887 55.556 0.00 0.00 0.00 4.79
325 326 2.682155 GGCAACCCAAACAGACAAAA 57.318 45.000 0.00 0.00 0.00 2.44
326 327 2.276201 GGCAACCCAAACAGACAAAAC 58.724 47.619 0.00 0.00 0.00 2.43
327 328 2.276201 GCAACCCAAACAGACAAAACC 58.724 47.619 0.00 0.00 0.00 3.27
328 329 2.899976 CAACCCAAACAGACAAAACCC 58.100 47.619 0.00 0.00 0.00 4.11
329 330 1.107945 ACCCAAACAGACAAAACCCG 58.892 50.000 0.00 0.00 0.00 5.28
330 331 0.249280 CCCAAACAGACAAAACCCGC 60.249 55.000 0.00 0.00 0.00 6.13
331 332 0.457851 CCAAACAGACAAAACCCGCA 59.542 50.000 0.00 0.00 0.00 5.69
332 333 1.068434 CCAAACAGACAAAACCCGCAT 59.932 47.619 0.00 0.00 0.00 4.73
333 334 2.393764 CAAACAGACAAAACCCGCATC 58.606 47.619 0.00 0.00 0.00 3.91
334 335 0.958822 AACAGACAAAACCCGCATCC 59.041 50.000 0.00 0.00 0.00 3.51
335 336 1.234615 ACAGACAAAACCCGCATCCG 61.235 55.000 0.00 0.00 0.00 4.18
336 337 1.072505 AGACAAAACCCGCATCCGT 59.927 52.632 0.00 0.00 0.00 4.69
337 338 0.536460 AGACAAAACCCGCATCCGTT 60.536 50.000 0.00 0.00 0.00 4.44
338 339 0.312729 GACAAAACCCGCATCCGTTT 59.687 50.000 0.00 0.00 33.69 3.60
339 340 0.031449 ACAAAACCCGCATCCGTTTG 59.969 50.000 0.00 0.00 35.41 2.93
340 341 0.665972 CAAAACCCGCATCCGTTTGG 60.666 55.000 0.00 0.00 32.65 3.28
351 352 2.373540 TCCGTTTGGATCGATTCGTT 57.626 45.000 5.89 0.00 40.17 3.85
352 353 1.996898 TCCGTTTGGATCGATTCGTTG 59.003 47.619 5.89 0.00 40.17 4.10
353 354 1.062002 CCGTTTGGATCGATTCGTTGG 59.938 52.381 5.89 0.00 37.49 3.77
354 355 1.996898 CGTTTGGATCGATTCGTTGGA 59.003 47.619 5.89 0.00 0.00 3.53
355 356 2.029244 CGTTTGGATCGATTCGTTGGAG 59.971 50.000 5.89 0.00 0.00 3.86
356 357 3.000727 GTTTGGATCGATTCGTTGGAGT 58.999 45.455 5.89 0.00 0.00 3.85
357 358 3.328382 TTGGATCGATTCGTTGGAGTT 57.672 42.857 5.89 0.00 0.00 3.01
358 359 2.616960 TGGATCGATTCGTTGGAGTTG 58.383 47.619 5.89 0.00 0.00 3.16
359 360 1.327764 GGATCGATTCGTTGGAGTTGC 59.672 52.381 5.89 0.00 0.00 4.17
360 361 2.271800 GATCGATTCGTTGGAGTTGCT 58.728 47.619 5.89 0.00 0.00 3.91
382 383 7.217200 TGCTCTTACAGAAACATCAGTAGTTT 58.783 34.615 0.00 0.00 41.53 2.66
385 386 7.732025 TCTTACAGAAACATCAGTAGTTTGGA 58.268 34.615 0.00 0.00 39.15 3.53
387 388 5.308825 ACAGAAACATCAGTAGTTTGGAGG 58.691 41.667 0.00 0.00 39.15 4.30
396 397 3.055094 CAGTAGTTTGGAGGGTGTGCTAT 60.055 47.826 0.00 0.00 0.00 2.97
506 560 6.891908 AGCACATAAACAATTTATCAGGGACT 59.108 34.615 0.00 0.00 33.92 3.85
507 561 8.052748 AGCACATAAACAATTTATCAGGGACTA 58.947 33.333 0.00 0.00 32.40 2.59
568 623 2.160417 CAGCAATCACCGAAACTCTTCC 59.840 50.000 0.00 0.00 0.00 3.46
611 672 0.871722 CGTCAATTCTCGTTTGGGCA 59.128 50.000 0.00 0.00 0.00 5.36
612 673 1.135972 CGTCAATTCTCGTTTGGGCAG 60.136 52.381 0.00 0.00 0.00 4.85
613 674 2.151202 GTCAATTCTCGTTTGGGCAGA 58.849 47.619 0.00 0.00 0.00 4.26
614 675 2.160417 GTCAATTCTCGTTTGGGCAGAG 59.840 50.000 0.00 0.00 0.00 3.35
615 676 1.470098 CAATTCTCGTTTGGGCAGAGG 59.530 52.381 0.00 0.00 33.16 3.69
616 677 0.693049 ATTCTCGTTTGGGCAGAGGT 59.307 50.000 0.00 0.00 33.16 3.85
617 678 0.472471 TTCTCGTTTGGGCAGAGGTT 59.528 50.000 0.00 0.00 33.16 3.50
618 679 0.472471 TCTCGTTTGGGCAGAGGTTT 59.528 50.000 0.00 0.00 33.16 3.27
619 680 1.133915 TCTCGTTTGGGCAGAGGTTTT 60.134 47.619 0.00 0.00 33.16 2.43
620 681 1.266989 CTCGTTTGGGCAGAGGTTTTC 59.733 52.381 0.00 0.00 0.00 2.29
621 682 0.040425 CGTTTGGGCAGAGGTTTTCG 60.040 55.000 0.00 0.00 0.00 3.46
622 683 1.029681 GTTTGGGCAGAGGTTTTCGT 58.970 50.000 0.00 0.00 0.00 3.85
623 684 1.407618 GTTTGGGCAGAGGTTTTCGTT 59.592 47.619 0.00 0.00 0.00 3.85
624 685 1.770294 TTGGGCAGAGGTTTTCGTTT 58.230 45.000 0.00 0.00 0.00 3.60
625 686 1.028905 TGGGCAGAGGTTTTCGTTTG 58.971 50.000 0.00 0.00 0.00 2.93
626 687 0.313987 GGGCAGAGGTTTTCGTTTGG 59.686 55.000 0.00 0.00 0.00 3.28
627 688 1.314730 GGCAGAGGTTTTCGTTTGGA 58.685 50.000 0.00 0.00 0.00 3.53
628 689 1.679153 GGCAGAGGTTTTCGTTTGGAA 59.321 47.619 0.00 0.00 0.00 3.53
629 690 2.296190 GGCAGAGGTTTTCGTTTGGAAT 59.704 45.455 0.00 0.00 33.85 3.01
630 691 3.565516 GCAGAGGTTTTCGTTTGGAATC 58.434 45.455 0.00 0.00 33.85 2.52
631 692 3.253432 GCAGAGGTTTTCGTTTGGAATCT 59.747 43.478 0.00 0.00 33.85 2.40
632 693 4.454504 GCAGAGGTTTTCGTTTGGAATCTA 59.545 41.667 0.00 0.00 33.85 1.98
633 694 5.048991 GCAGAGGTTTTCGTTTGGAATCTAA 60.049 40.000 0.00 0.00 33.85 2.10
634 695 6.514376 GCAGAGGTTTTCGTTTGGAATCTAAA 60.514 38.462 0.00 0.00 33.85 1.85
635 696 7.422399 CAGAGGTTTTCGTTTGGAATCTAAAA 58.578 34.615 0.00 0.00 33.85 1.52
636 697 7.918562 CAGAGGTTTTCGTTTGGAATCTAAAAA 59.081 33.333 0.00 0.00 33.85 1.94
696 776 2.812011 CCTCGGAGTCCATTTTCGTTTT 59.188 45.455 10.49 0.00 0.00 2.43
710 790 4.487714 TTCGTTTTATCTGCCTCTCCAT 57.512 40.909 0.00 0.00 0.00 3.41
848 938 1.544246 CATCCCTCCCGAAAAACCAAC 59.456 52.381 0.00 0.00 0.00 3.77
1173 1296 1.629043 TCCGCAAGTACCAGAAGAGT 58.371 50.000 0.00 0.00 0.00 3.24
1329 1452 0.679505 TCTTCGAGGACACCAACCTG 59.320 55.000 0.00 0.00 37.93 4.00
1591 1807 2.634982 TGATGCCTGTTTTCGATTGC 57.365 45.000 0.00 0.00 0.00 3.56
1619 1835 2.332104 CCTGTCAGTGATTGTGAGTCG 58.668 52.381 0.00 0.00 0.00 4.18
1668 1886 2.470999 CGTGAAATTTTCTGCCGGTTTG 59.529 45.455 1.90 0.00 0.00 2.93
1680 1898 1.163420 CCGGTTTGTGCTACTGTGCA 61.163 55.000 0.00 0.00 41.05 4.57
1681 1899 0.660488 CGGTTTGTGCTACTGTGCAA 59.340 50.000 6.51 0.00 45.12 4.08
1682 1900 1.064803 CGGTTTGTGCTACTGTGCAAA 59.935 47.619 6.51 0.00 45.12 3.68
1683 1901 2.459934 GGTTTGTGCTACTGTGCAAAC 58.540 47.619 16.31 16.31 45.12 2.93
1684 1902 2.108700 GTTTGTGCTACTGTGCAAACG 58.891 47.619 6.51 0.00 45.12 3.60
1685 1903 0.660488 TTGTGCTACTGTGCAAACGG 59.340 50.000 6.51 0.00 45.12 4.44
1686 1904 1.082104 GTGCTACTGTGCAAACGGC 60.082 57.895 6.51 0.00 45.12 5.68
1715 1958 8.958119 TCTGGCTGTATTAAATTTCGTAATCT 57.042 30.769 0.00 0.00 0.00 2.40
1716 1959 9.042008 TCTGGCTGTATTAAATTTCGTAATCTC 57.958 33.333 0.00 0.00 0.00 2.75
1717 1960 8.958119 TGGCTGTATTAAATTTCGTAATCTCT 57.042 30.769 0.00 0.00 0.00 3.10
1743 1986 4.749245 AGTAATTTTGTTGACTGCCTCG 57.251 40.909 0.00 0.00 0.00 4.63
1744 1987 4.134563 AGTAATTTTGTTGACTGCCTCGT 58.865 39.130 0.00 0.00 0.00 4.18
1745 1988 5.302360 AGTAATTTTGTTGACTGCCTCGTA 58.698 37.500 0.00 0.00 0.00 3.43
1746 1989 4.749245 AATTTTGTTGACTGCCTCGTAG 57.251 40.909 0.00 0.00 0.00 3.51
1747 1990 2.902705 TTTGTTGACTGCCTCGTAGT 57.097 45.000 0.00 0.00 0.00 2.73
1748 1991 4.325028 TTTTGTTGACTGCCTCGTAGTA 57.675 40.909 0.00 0.00 0.00 1.82
1749 1992 4.325028 TTTGTTGACTGCCTCGTAGTAA 57.675 40.909 0.00 0.00 0.00 2.24
1750 1993 4.530710 TTGTTGACTGCCTCGTAGTAAT 57.469 40.909 0.00 0.00 0.00 1.89
1751 1994 4.530710 TGTTGACTGCCTCGTAGTAATT 57.469 40.909 0.00 0.00 0.00 1.40
1752 1995 4.890088 TGTTGACTGCCTCGTAGTAATTT 58.110 39.130 0.00 0.00 0.00 1.82
1753 1996 5.302360 TGTTGACTGCCTCGTAGTAATTTT 58.698 37.500 0.00 0.00 0.00 1.82
1754 1997 5.407387 TGTTGACTGCCTCGTAGTAATTTTC 59.593 40.000 0.00 0.00 0.00 2.29
1757 2000 4.421948 ACTGCCTCGTAGTAATTTTCGAG 58.578 43.478 6.47 6.47 45.89 4.04
1764 2007 4.860907 TCGTAGTAATTTTCGAGCCTGAAC 59.139 41.667 0.00 0.00 0.00 3.18
1798 2041 1.545614 CGTTCGGTTCTGTGTGTCCG 61.546 60.000 0.00 0.00 43.65 4.79
1824 2091 7.687757 GTCTGTTTATGTTGTTTTGCTGTTTTG 59.312 33.333 0.00 0.00 0.00 2.44
1825 2092 7.600375 TCTGTTTATGTTGTTTTGCTGTTTTGA 59.400 29.630 0.00 0.00 0.00 2.69
1827 2094 7.386299 TGTTTATGTTGTTTTGCTGTTTTGACT 59.614 29.630 0.00 0.00 0.00 3.41
1828 2095 5.783100 ATGTTGTTTTGCTGTTTTGACTG 57.217 34.783 0.00 0.00 0.00 3.51
1829 2096 4.626042 TGTTGTTTTGCTGTTTTGACTGT 58.374 34.783 0.00 0.00 0.00 3.55
1832 2099 5.837586 TGTTTTGCTGTTTTGACTGTTTC 57.162 34.783 0.00 0.00 0.00 2.78
1835 2132 6.426328 TGTTTTGCTGTTTTGACTGTTTCAAT 59.574 30.769 0.00 0.00 43.99 2.57
1863 2161 4.883585 CACCTGTACCATGATGCTAACAAT 59.116 41.667 0.00 0.00 0.00 2.71
1865 2163 5.590259 ACCTGTACCATGATGCTAACAATTC 59.410 40.000 0.00 0.00 0.00 2.17
1921 2222 5.515797 TGACTGCTCATACTGTACATACC 57.484 43.478 0.00 0.00 0.00 2.73
1925 2226 3.002965 TGCTCATACTGTACATACCGTCG 59.997 47.826 0.00 0.00 0.00 5.12
1936 2237 5.736824 TGTACATACCGTCGTTAATACAACG 59.263 40.000 3.25 3.25 44.29 4.10
1947 2248 7.576602 CGTCGTTAATACAACGGTATCAAATTC 59.423 37.037 9.39 0.00 43.24 2.17
1990 2291 6.857777 CATCTGATGGATTTCTTGTACCTC 57.142 41.667 9.82 0.00 31.27 3.85
2002 2323 4.641396 TCTTGTACCTCCAAATGACAGTG 58.359 43.478 0.00 0.00 0.00 3.66
2006 2327 3.576078 ACCTCCAAATGACAGTGTCAA 57.424 42.857 28.70 11.87 45.96 3.18
2007 2328 4.104383 ACCTCCAAATGACAGTGTCAAT 57.896 40.909 28.70 18.88 45.96 2.57
2009 2330 3.192001 CCTCCAAATGACAGTGTCAATGG 59.808 47.826 34.43 34.43 45.96 3.16
2010 2331 3.822735 CTCCAAATGACAGTGTCAATGGT 59.177 43.478 36.12 20.59 45.96 3.55
2036 2366 4.508662 GCTGAAGCAGAAGGTGTAACTAT 58.491 43.478 0.00 0.00 41.59 2.12
2048 2378 5.788450 AGGTGTAACTATAGATGATGCAGC 58.212 41.667 6.78 0.00 36.74 5.25
2081 2411 3.058639 GCAGATCAGAAAGGTGAACACAC 60.059 47.826 7.25 0.00 0.00 3.82
2138 2468 9.812347 ATTTAATGCTGGAATGATATCCTGTAA 57.188 29.630 0.00 0.00 40.35 2.41
2144 2474 6.260050 GCTGGAATGATATCCTGTAACGAAAA 59.740 38.462 0.00 0.00 40.35 2.29
2155 2485 7.781548 TCCTGTAACGAAAAAGGATTATAGC 57.218 36.000 0.00 0.00 33.85 2.97
2156 2486 7.332557 TCCTGTAACGAAAAAGGATTATAGCA 58.667 34.615 0.00 0.00 33.85 3.49
2181 2512 8.655092 CATGTCTCTTAACTGTCTTTGATCTTC 58.345 37.037 0.00 0.00 0.00 2.87
2187 2518 7.821359 TCTTAACTGTCTTTGATCTTCTCCATG 59.179 37.037 0.00 0.00 0.00 3.66
2256 2613 2.433318 GGCGTGAGGAGACTGCAC 60.433 66.667 0.00 0.00 44.43 4.57
2306 2663 4.957759 ACTGTAGAACGTGTTTTTGCTT 57.042 36.364 0.00 0.00 0.00 3.91
2310 2667 7.306953 ACTGTAGAACGTGTTTTTGCTTTAAA 58.693 30.769 0.00 0.00 0.00 1.52
2342 2699 5.839621 AGATCCATTTGCACATAATTCTGC 58.160 37.500 0.00 0.00 0.00 4.26
2367 2724 7.444183 GCTGGCATCTAGTTTATGGTTTACATA 59.556 37.037 0.00 0.00 41.03 2.29
2403 2765 6.324254 GGGATGAGGAAGCTCTAAAGTACTTA 59.676 42.308 8.92 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.913573 GCCACGCGTCATGCTACG 61.914 66.667 9.86 2.74 45.58 3.51
1 2 3.564027 GGCCACGCGTCATGCTAC 61.564 66.667 9.86 0.00 43.27 3.58
2 3 4.830765 GGGCCACGCGTCATGCTA 62.831 66.667 9.86 0.00 43.27 3.49
13 14 3.775654 CTCCCACTCTCGGGCCAC 61.776 72.222 4.39 0.00 46.92 5.01
18 19 1.406065 ATGATGCCTCCCACTCTCGG 61.406 60.000 0.00 0.00 0.00 4.63
19 20 0.467384 AATGATGCCTCCCACTCTCG 59.533 55.000 0.00 0.00 0.00 4.04
20 21 1.202746 GGAATGATGCCTCCCACTCTC 60.203 57.143 0.00 0.00 0.00 3.20
21 22 0.842635 GGAATGATGCCTCCCACTCT 59.157 55.000 0.00 0.00 0.00 3.24
22 23 3.410960 GGAATGATGCCTCCCACTC 57.589 57.895 0.00 0.00 0.00 3.51
27 28 1.064463 TCAACTGGGAATGATGCCTCC 60.064 52.381 0.00 0.00 38.04 4.30
28 29 2.019984 GTCAACTGGGAATGATGCCTC 58.980 52.381 0.00 0.00 38.04 4.70
29 30 1.341383 GGTCAACTGGGAATGATGCCT 60.341 52.381 0.00 0.00 38.04 4.75
30 31 1.106285 GGTCAACTGGGAATGATGCC 58.894 55.000 0.00 0.00 37.61 4.40
31 32 2.019984 GAGGTCAACTGGGAATGATGC 58.980 52.381 0.00 0.00 0.00 3.91
32 33 3.012518 GTGAGGTCAACTGGGAATGATG 58.987 50.000 0.00 0.00 0.00 3.07
33 34 2.025887 GGTGAGGTCAACTGGGAATGAT 60.026 50.000 0.00 0.00 0.00 2.45
34 35 1.351017 GGTGAGGTCAACTGGGAATGA 59.649 52.381 0.00 0.00 0.00 2.57
35 36 1.826385 GGTGAGGTCAACTGGGAATG 58.174 55.000 0.00 0.00 0.00 2.67
36 37 0.324943 CGGTGAGGTCAACTGGGAAT 59.675 55.000 0.00 0.00 0.00 3.01
37 38 1.752198 CGGTGAGGTCAACTGGGAA 59.248 57.895 0.00 0.00 0.00 3.97
38 39 2.214216 CCGGTGAGGTCAACTGGGA 61.214 63.158 0.00 0.00 34.51 4.37
39 40 2.347490 CCGGTGAGGTCAACTGGG 59.653 66.667 0.00 0.00 34.51 4.45
55 56 3.210528 ATCGACCGAGCCGAGACC 61.211 66.667 0.00 0.00 39.55 3.85
56 57 2.024871 CATCGACCGAGCCGAGAC 59.975 66.667 0.00 0.00 39.55 3.36
57 58 2.124860 TCATCGACCGAGCCGAGA 60.125 61.111 0.00 0.00 39.55 4.04
58 59 2.329690 CTCATCGACCGAGCCGAG 59.670 66.667 1.04 0.85 39.55 4.63
59 60 2.960359 ATCCTCATCGACCGAGCCGA 62.960 60.000 7.95 0.00 40.53 5.54
60 61 2.556459 ATCCTCATCGACCGAGCCG 61.556 63.158 7.95 0.00 0.00 5.52
61 62 1.006805 CATCCTCATCGACCGAGCC 60.007 63.158 7.95 0.00 0.00 4.70
62 63 1.663074 GCATCCTCATCGACCGAGC 60.663 63.158 7.95 0.00 0.00 5.03
63 64 1.006805 GGCATCCTCATCGACCGAG 60.007 63.158 6.70 6.70 0.00 4.63
64 65 0.179001 TAGGCATCCTCATCGACCGA 60.179 55.000 0.00 0.00 34.61 4.69
65 66 0.242286 CTAGGCATCCTCATCGACCG 59.758 60.000 0.00 0.00 34.61 4.79
66 67 0.605589 CCTAGGCATCCTCATCGACC 59.394 60.000 0.00 0.00 34.61 4.79
67 68 0.605589 CCCTAGGCATCCTCATCGAC 59.394 60.000 2.05 0.00 34.61 4.20
68 69 3.057749 CCCTAGGCATCCTCATCGA 57.942 57.895 2.05 0.00 34.61 3.59
80 81 1.669999 GCCTTGCACATTGCCCTAGG 61.670 60.000 0.06 0.06 44.23 3.02
81 82 1.811860 GCCTTGCACATTGCCCTAG 59.188 57.895 0.00 0.00 44.23 3.02
82 83 2.045708 CGCCTTGCACATTGCCCTA 61.046 57.895 0.00 0.00 44.23 3.53
83 84 3.376078 CGCCTTGCACATTGCCCT 61.376 61.111 0.00 0.00 44.23 5.19
84 85 4.440127 CCGCCTTGCACATTGCCC 62.440 66.667 0.00 0.00 44.23 5.36
85 86 4.440127 CCCGCCTTGCACATTGCC 62.440 66.667 0.00 0.00 44.23 4.52
86 87 4.440127 CCCCGCCTTGCACATTGC 62.440 66.667 0.00 0.00 45.29 3.56
87 88 4.440127 GCCCCGCCTTGCACATTG 62.440 66.667 0.00 0.00 0.00 2.82
102 103 4.702081 AGTCTGTGTCGCGTCGCC 62.702 66.667 12.44 0.00 0.00 5.54
103 104 1.818221 AAAAGTCTGTGTCGCGTCGC 61.818 55.000 7.29 7.29 0.00 5.19
104 105 0.575390 AAAAAGTCTGTGTCGCGTCG 59.425 50.000 5.77 0.00 0.00 5.12
105 106 3.847037 TTAAAAAGTCTGTGTCGCGTC 57.153 42.857 5.77 0.00 0.00 5.19
106 107 4.603231 TTTTAAAAAGTCTGTGTCGCGT 57.397 36.364 5.77 0.00 0.00 6.01
107 108 5.525536 CTTTTTAAAAAGTCTGTGTCGCG 57.474 39.130 25.95 0.00 40.31 5.87
132 133 9.684448 TCGCATTGACAAGAAAAACATTAAATA 57.316 25.926 0.00 0.00 0.00 1.40
133 134 8.586570 TCGCATTGACAAGAAAAACATTAAAT 57.413 26.923 0.00 0.00 0.00 1.40
134 135 7.993821 TCGCATTGACAAGAAAAACATTAAA 57.006 28.000 0.00 0.00 0.00 1.52
135 136 7.704472 AGTTCGCATTGACAAGAAAAACATTAA 59.296 29.630 0.00 0.00 0.00 1.40
136 137 7.199766 AGTTCGCATTGACAAGAAAAACATTA 58.800 30.769 0.00 0.00 0.00 1.90
137 138 6.042143 AGTTCGCATTGACAAGAAAAACATT 58.958 32.000 0.00 0.00 0.00 2.71
138 139 5.591099 AGTTCGCATTGACAAGAAAAACAT 58.409 33.333 0.00 0.00 0.00 2.71
139 140 4.992688 AGTTCGCATTGACAAGAAAAACA 58.007 34.783 0.00 0.00 0.00 2.83
140 141 5.949233 AAGTTCGCATTGACAAGAAAAAC 57.051 34.783 0.00 0.00 0.00 2.43
141 142 5.290643 CCAAAGTTCGCATTGACAAGAAAAA 59.709 36.000 0.00 0.00 0.00 1.94
142 143 4.803088 CCAAAGTTCGCATTGACAAGAAAA 59.197 37.500 0.00 0.00 0.00 2.29
143 144 4.358851 CCAAAGTTCGCATTGACAAGAAA 58.641 39.130 0.00 0.00 0.00 2.52
144 145 3.795150 GCCAAAGTTCGCATTGACAAGAA 60.795 43.478 0.00 0.00 0.00 2.52
145 146 2.287547 GCCAAAGTTCGCATTGACAAGA 60.288 45.455 0.00 0.00 0.00 3.02
146 147 2.053627 GCCAAAGTTCGCATTGACAAG 58.946 47.619 0.00 0.00 0.00 3.16
147 148 1.680735 AGCCAAAGTTCGCATTGACAA 59.319 42.857 0.00 0.00 0.00 3.18
148 149 1.001487 CAGCCAAAGTTCGCATTGACA 60.001 47.619 0.00 0.00 0.00 3.58
149 150 1.666888 CCAGCCAAAGTTCGCATTGAC 60.667 52.381 0.00 0.00 0.00 3.18
150 151 0.597568 CCAGCCAAAGTTCGCATTGA 59.402 50.000 0.00 0.00 0.00 2.57
151 152 1.010419 GCCAGCCAAAGTTCGCATTG 61.010 55.000 0.00 0.00 0.00 2.82
152 153 1.181098 AGCCAGCCAAAGTTCGCATT 61.181 50.000 0.00 0.00 0.00 3.56
153 154 1.604593 AGCCAGCCAAAGTTCGCAT 60.605 52.632 0.00 0.00 0.00 4.73
154 155 2.203337 AGCCAGCCAAAGTTCGCA 60.203 55.556 0.00 0.00 0.00 5.10
155 156 2.075426 AACAGCCAGCCAAAGTTCGC 62.075 55.000 0.00 0.00 0.00 4.70
156 157 0.318107 CAACAGCCAGCCAAAGTTCG 60.318 55.000 0.00 0.00 0.00 3.95
157 158 1.032014 TCAACAGCCAGCCAAAGTTC 58.968 50.000 0.00 0.00 0.00 3.01
158 159 0.746659 GTCAACAGCCAGCCAAAGTT 59.253 50.000 0.00 0.00 0.00 2.66
159 160 1.109323 GGTCAACAGCCAGCCAAAGT 61.109 55.000 0.00 0.00 0.00 2.66
160 161 0.825010 AGGTCAACAGCCAGCCAAAG 60.825 55.000 0.00 0.00 0.00 2.77
161 162 1.108727 CAGGTCAACAGCCAGCCAAA 61.109 55.000 0.00 0.00 0.00 3.28
162 163 1.529010 CAGGTCAACAGCCAGCCAA 60.529 57.895 0.00 0.00 0.00 4.52
163 164 2.113774 CAGGTCAACAGCCAGCCA 59.886 61.111 0.00 0.00 0.00 4.75
164 165 2.113986 ACAGGTCAACAGCCAGCC 59.886 61.111 0.00 0.00 0.00 4.85
165 166 1.103398 AACACAGGTCAACAGCCAGC 61.103 55.000 0.00 0.00 0.00 4.85
166 167 1.392589 AAACACAGGTCAACAGCCAG 58.607 50.000 0.00 0.00 0.00 4.85
167 168 1.846007 AAAACACAGGTCAACAGCCA 58.154 45.000 0.00 0.00 0.00 4.75
168 169 2.959507 AAAAACACAGGTCAACAGCC 57.040 45.000 0.00 0.00 0.00 4.85
169 170 5.348164 ACATTAAAAACACAGGTCAACAGC 58.652 37.500 0.00 0.00 0.00 4.40
170 171 7.826260 AAACATTAAAAACACAGGTCAACAG 57.174 32.000 0.00 0.00 0.00 3.16
171 172 9.877178 ATTAAACATTAAAAACACAGGTCAACA 57.123 25.926 0.00 0.00 0.00 3.33
209 210 9.871238 TGTAAATGCGGGCTAAAAATAATTAAA 57.129 25.926 0.00 0.00 0.00 1.52
210 211 9.522804 CTGTAAATGCGGGCTAAAAATAATTAA 57.477 29.630 0.00 0.00 0.00 1.40
211 212 7.650104 GCTGTAAATGCGGGCTAAAAATAATTA 59.350 33.333 0.00 0.00 0.00 1.40
212 213 6.478673 GCTGTAAATGCGGGCTAAAAATAATT 59.521 34.615 0.00 0.00 0.00 1.40
213 214 5.983118 GCTGTAAATGCGGGCTAAAAATAAT 59.017 36.000 0.00 0.00 0.00 1.28
214 215 5.126384 AGCTGTAAATGCGGGCTAAAAATAA 59.874 36.000 0.00 0.00 35.28 1.40
215 216 4.642885 AGCTGTAAATGCGGGCTAAAAATA 59.357 37.500 0.00 0.00 35.28 1.40
216 217 3.447229 AGCTGTAAATGCGGGCTAAAAAT 59.553 39.130 0.00 0.00 35.28 1.82
217 218 2.823154 AGCTGTAAATGCGGGCTAAAAA 59.177 40.909 0.00 0.00 35.28 1.94
218 219 2.422127 GAGCTGTAAATGCGGGCTAAAA 59.578 45.455 0.00 0.00 33.13 1.52
219 220 2.014128 GAGCTGTAAATGCGGGCTAAA 58.986 47.619 0.00 0.00 33.13 1.85
220 221 1.663695 GAGCTGTAAATGCGGGCTAA 58.336 50.000 0.00 0.00 33.13 3.09
221 222 0.529773 CGAGCTGTAAATGCGGGCTA 60.530 55.000 0.00 0.00 33.13 3.93
222 223 1.815421 CGAGCTGTAAATGCGGGCT 60.815 57.895 0.00 0.00 35.86 5.19
223 224 2.106683 ACGAGCTGTAAATGCGGGC 61.107 57.895 0.00 0.00 35.28 6.13
224 225 1.705337 CCACGAGCTGTAAATGCGGG 61.705 60.000 0.00 0.00 35.28 6.13
225 226 1.705337 CCCACGAGCTGTAAATGCGG 61.705 60.000 0.00 0.00 35.28 5.69
226 227 1.019278 ACCCACGAGCTGTAAATGCG 61.019 55.000 0.00 0.00 35.28 4.73
227 228 0.727398 GACCCACGAGCTGTAAATGC 59.273 55.000 0.00 0.00 0.00 3.56
228 229 0.999406 CGACCCACGAGCTGTAAATG 59.001 55.000 0.00 0.00 45.77 2.32
229 230 0.108329 CCGACCCACGAGCTGTAAAT 60.108 55.000 0.00 0.00 45.77 1.40
230 231 1.180456 TCCGACCCACGAGCTGTAAA 61.180 55.000 0.00 0.00 45.77 2.01
231 232 1.604308 TCCGACCCACGAGCTGTAA 60.604 57.895 0.00 0.00 45.77 2.41
232 233 2.034532 TCCGACCCACGAGCTGTA 59.965 61.111 0.00 0.00 45.77 2.74
233 234 3.681835 GTCCGACCCACGAGCTGT 61.682 66.667 0.00 0.00 45.77 4.40
234 235 4.436998 GGTCCGACCCACGAGCTG 62.437 72.222 6.25 0.00 45.77 4.24
235 236 4.988716 TGGTCCGACCCACGAGCT 62.989 66.667 15.24 0.00 45.77 4.09
236 237 4.736896 GTGGTCCGACCCACGAGC 62.737 72.222 15.24 0.00 45.03 5.03
247 248 0.240945 CTTGCATCAAACGGTGGTCC 59.759 55.000 0.00 0.00 0.00 4.46
248 249 0.387239 GCTTGCATCAAACGGTGGTC 60.387 55.000 0.00 0.00 0.00 4.02
249 250 1.106351 TGCTTGCATCAAACGGTGGT 61.106 50.000 0.00 0.00 0.00 4.16
250 251 0.664166 GTGCTTGCATCAAACGGTGG 60.664 55.000 0.00 0.00 0.00 4.61
251 252 0.311790 AGTGCTTGCATCAAACGGTG 59.688 50.000 0.00 0.00 0.00 4.94
252 253 0.311790 CAGTGCTTGCATCAAACGGT 59.688 50.000 0.00 0.00 0.00 4.83
253 254 0.592637 TCAGTGCTTGCATCAAACGG 59.407 50.000 0.00 0.00 0.00 4.44
254 255 1.664016 GGTCAGTGCTTGCATCAAACG 60.664 52.381 0.00 0.00 0.00 3.60
255 256 1.336240 GGGTCAGTGCTTGCATCAAAC 60.336 52.381 0.00 0.00 0.00 2.93
256 257 0.961019 GGGTCAGTGCTTGCATCAAA 59.039 50.000 0.00 0.00 0.00 2.69
257 258 0.178995 TGGGTCAGTGCTTGCATCAA 60.179 50.000 0.00 0.00 0.00 2.57
258 259 0.178995 TTGGGTCAGTGCTTGCATCA 60.179 50.000 0.00 0.00 0.00 3.07
259 260 0.961019 TTTGGGTCAGTGCTTGCATC 59.039 50.000 0.00 0.00 0.00 3.91
260 261 1.636148 ATTTGGGTCAGTGCTTGCAT 58.364 45.000 0.00 0.00 0.00 3.96
261 262 2.284754 TATTTGGGTCAGTGCTTGCA 57.715 45.000 0.00 0.00 0.00 4.08
262 263 3.658757 TTTATTTGGGTCAGTGCTTGC 57.341 42.857 0.00 0.00 0.00 4.01
283 284 3.112842 GGACGCCCGTGTGTTTTT 58.887 55.556 0.00 0.00 34.74 1.94
305 306 0.827368 TTTGTCTGTTTGGGTTGCCC 59.173 50.000 0.00 0.00 45.71 5.36
306 307 2.276201 GTTTTGTCTGTTTGGGTTGCC 58.724 47.619 0.00 0.00 0.00 4.52
307 308 2.276201 GGTTTTGTCTGTTTGGGTTGC 58.724 47.619 0.00 0.00 0.00 4.17
308 309 2.737039 CGGGTTTTGTCTGTTTGGGTTG 60.737 50.000 0.00 0.00 0.00 3.77
309 310 1.478916 CGGGTTTTGTCTGTTTGGGTT 59.521 47.619 0.00 0.00 0.00 4.11
310 311 1.107945 CGGGTTTTGTCTGTTTGGGT 58.892 50.000 0.00 0.00 0.00 4.51
311 312 0.249280 GCGGGTTTTGTCTGTTTGGG 60.249 55.000 0.00 0.00 0.00 4.12
312 313 0.457851 TGCGGGTTTTGTCTGTTTGG 59.542 50.000 0.00 0.00 0.00 3.28
313 314 2.393764 GATGCGGGTTTTGTCTGTTTG 58.606 47.619 0.00 0.00 0.00 2.93
314 315 1.339929 GGATGCGGGTTTTGTCTGTTT 59.660 47.619 0.00 0.00 0.00 2.83
315 316 0.958822 GGATGCGGGTTTTGTCTGTT 59.041 50.000 0.00 0.00 0.00 3.16
316 317 1.234615 CGGATGCGGGTTTTGTCTGT 61.235 55.000 0.00 0.00 0.00 3.41
317 318 1.234615 ACGGATGCGGGTTTTGTCTG 61.235 55.000 12.44 0.00 0.00 3.51
318 319 0.536460 AACGGATGCGGGTTTTGTCT 60.536 50.000 12.44 0.00 0.00 3.41
319 320 0.312729 AAACGGATGCGGGTTTTGTC 59.687 50.000 12.44 0.00 32.77 3.18
320 321 0.031449 CAAACGGATGCGGGTTTTGT 59.969 50.000 12.44 0.00 34.33 2.83
321 322 0.665972 CCAAACGGATGCGGGTTTTG 60.666 55.000 12.44 12.35 34.33 2.44
322 323 0.824182 TCCAAACGGATGCGGGTTTT 60.824 50.000 12.44 0.00 34.33 2.43
323 324 0.610785 ATCCAAACGGATGCGGGTTT 60.611 50.000 12.44 0.00 41.99 3.27
324 325 1.001393 ATCCAAACGGATGCGGGTT 60.001 52.632 12.44 1.34 41.99 4.11
325 326 1.451387 GATCCAAACGGATGCGGGT 60.451 57.895 12.44 0.00 43.70 5.28
326 327 2.534019 CGATCCAAACGGATGCGGG 61.534 63.158 12.44 2.44 43.70 6.13
327 328 0.880278 ATCGATCCAAACGGATGCGG 60.880 55.000 12.44 0.00 43.70 5.69
328 329 0.937304 AATCGATCCAAACGGATGCG 59.063 50.000 4.58 4.58 43.70 4.73
329 330 1.070577 CGAATCGATCCAAACGGATGC 60.071 52.381 0.00 0.00 43.70 3.91
330 331 2.201732 ACGAATCGATCCAAACGGATG 58.798 47.619 10.55 0.00 43.70 3.51
331 332 2.596904 ACGAATCGATCCAAACGGAT 57.403 45.000 10.55 0.00 46.49 4.18
332 333 1.996898 CAACGAATCGATCCAAACGGA 59.003 47.619 10.55 0.00 36.85 4.69
333 334 1.062002 CCAACGAATCGATCCAAACGG 59.938 52.381 10.55 0.00 0.00 4.44
334 335 1.996898 TCCAACGAATCGATCCAAACG 59.003 47.619 10.55 3.09 0.00 3.60
335 336 3.000727 ACTCCAACGAATCGATCCAAAC 58.999 45.455 10.55 0.00 0.00 2.93
336 337 3.328382 ACTCCAACGAATCGATCCAAA 57.672 42.857 10.55 0.00 0.00 3.28
337 338 3.000041 CAACTCCAACGAATCGATCCAA 59.000 45.455 10.55 0.00 0.00 3.53
338 339 2.616960 CAACTCCAACGAATCGATCCA 58.383 47.619 10.55 0.00 0.00 3.41
339 340 1.327764 GCAACTCCAACGAATCGATCC 59.672 52.381 10.55 0.00 0.00 3.36
340 341 2.271800 AGCAACTCCAACGAATCGATC 58.728 47.619 10.55 0.00 0.00 3.69
341 342 2.093973 AGAGCAACTCCAACGAATCGAT 60.094 45.455 10.55 0.00 0.00 3.59
342 343 1.272490 AGAGCAACTCCAACGAATCGA 59.728 47.619 10.55 0.00 0.00 3.59
343 344 1.714794 AGAGCAACTCCAACGAATCG 58.285 50.000 0.00 0.00 0.00 3.34
344 345 3.994392 TGTAAGAGCAACTCCAACGAATC 59.006 43.478 0.00 0.00 0.00 2.52
345 346 3.997021 CTGTAAGAGCAACTCCAACGAAT 59.003 43.478 0.00 0.00 34.07 3.34
346 347 3.069016 TCTGTAAGAGCAACTCCAACGAA 59.931 43.478 0.00 0.00 38.67 3.85
347 348 2.626266 TCTGTAAGAGCAACTCCAACGA 59.374 45.455 0.00 0.00 38.67 3.85
348 349 3.026630 TCTGTAAGAGCAACTCCAACG 57.973 47.619 0.00 0.00 38.67 4.10
360 361 7.732025 TCCAAACTACTGATGTTTCTGTAAGA 58.268 34.615 0.00 0.00 44.68 2.10
396 397 6.238103 CGAACTTCTTTTCAGTTTGACTGCTA 60.238 38.462 3.26 0.00 45.54 3.49
460 462 9.612066 TGTGCTAATTCATCATAAACACTGATA 57.388 29.630 0.00 0.00 32.18 2.15
544 598 4.207891 AGAGTTTCGGTGATTGCTGTAT 57.792 40.909 0.00 0.00 0.00 2.29
547 601 2.160417 GGAAGAGTTTCGGTGATTGCTG 59.840 50.000 0.00 0.00 33.98 4.41
582 642 5.117355 ACGAGAATTGACGAAACTAGTGA 57.883 39.130 0.00 0.00 0.00 3.41
611 672 7.576861 TTTTAGATTCCAAACGAAAACCTCT 57.423 32.000 0.00 0.00 33.08 3.69
656 717 3.283684 CTTTGCCGCCAACGTCCA 61.284 61.111 0.00 0.00 37.70 4.02
674 735 0.391263 ACGAAAATGGACTCCGAGGC 60.391 55.000 0.00 0.00 0.00 4.70
696 776 2.174360 CGGATCATGGAGAGGCAGATA 58.826 52.381 0.00 0.00 0.00 1.98
710 790 1.377366 GAGACGAGTCAGCCGGATCA 61.377 60.000 5.05 0.00 0.00 2.92
927 1025 1.064389 GGGGAATTGGAGTGAGGAAGG 60.064 57.143 0.00 0.00 0.00 3.46
1173 1296 3.120105 CGGATGAGCAGCTCGGTA 58.880 61.111 17.81 0.19 32.35 4.02
1591 1807 2.398252 ATCACTGACAGGCTCACATG 57.602 50.000 7.51 0.00 0.00 3.21
1668 1886 1.082104 GCCGTTTGCACAGTAGCAC 60.082 57.895 0.00 0.00 45.61 4.40
1688 1906 7.548196 TTACGAAATTTAATACAGCCAGAGG 57.452 36.000 0.00 0.00 0.00 3.69
1691 1909 9.046296 AGAGATTACGAAATTTAATACAGCCAG 57.954 33.333 0.00 0.00 0.00 4.85
1715 1958 6.366877 GGCAGTCAACAAAATTACTACGTAGA 59.633 38.462 28.74 8.07 0.00 2.59
1716 1959 6.367969 AGGCAGTCAACAAAATTACTACGTAG 59.632 38.462 20.97 20.97 0.00 3.51
1717 1960 6.225318 AGGCAGTCAACAAAATTACTACGTA 58.775 36.000 0.00 0.00 0.00 3.57
1718 1961 5.061179 AGGCAGTCAACAAAATTACTACGT 58.939 37.500 0.00 0.00 0.00 3.57
1719 1962 5.607119 AGGCAGTCAACAAAATTACTACG 57.393 39.130 0.00 0.00 0.00 3.51
1743 1986 4.860907 TCGTTCAGGCTCGAAAATTACTAC 59.139 41.667 0.00 0.00 33.13 2.73
1744 1987 5.063180 TCGTTCAGGCTCGAAAATTACTA 57.937 39.130 0.00 0.00 33.13 1.82
1745 1988 3.921677 TCGTTCAGGCTCGAAAATTACT 58.078 40.909 0.00 0.00 33.13 2.24
1746 1989 4.084223 TGTTCGTTCAGGCTCGAAAATTAC 60.084 41.667 10.57 1.06 45.25 1.89
1747 1990 4.059511 TGTTCGTTCAGGCTCGAAAATTA 58.940 39.130 10.57 0.00 45.25 1.40
1748 1991 2.875933 TGTTCGTTCAGGCTCGAAAATT 59.124 40.909 10.57 0.00 45.25 1.82
1749 1992 2.480419 CTGTTCGTTCAGGCTCGAAAAT 59.520 45.455 10.57 0.00 45.25 1.82
1750 1993 1.864711 CTGTTCGTTCAGGCTCGAAAA 59.135 47.619 10.57 5.48 45.25 2.29
1751 1994 1.497991 CTGTTCGTTCAGGCTCGAAA 58.502 50.000 10.57 2.59 45.25 3.46
1752 1995 0.944311 GCTGTTCGTTCAGGCTCGAA 60.944 55.000 5.53 5.53 42.41 3.71
1753 1996 1.372997 GCTGTTCGTTCAGGCTCGA 60.373 57.895 10.40 0.00 36.12 4.04
1754 1997 3.159984 GCTGTTCGTTCAGGCTCG 58.840 61.111 10.40 0.00 36.12 5.03
1784 2027 0.104304 ACAGACGGACACACAGAACC 59.896 55.000 0.00 0.00 0.00 3.62
1798 2041 6.885735 AACAGCAAAACAACATAAACAGAC 57.114 33.333 0.00 0.00 0.00 3.51
1824 2091 4.636249 ACAGGTGAGAGATTGAAACAGTC 58.364 43.478 0.00 0.00 0.00 3.51
1825 2092 4.696479 ACAGGTGAGAGATTGAAACAGT 57.304 40.909 0.00 0.00 0.00 3.55
1827 2094 4.346709 TGGTACAGGTGAGAGATTGAAACA 59.653 41.667 0.00 0.00 0.00 2.83
1828 2095 4.894784 TGGTACAGGTGAGAGATTGAAAC 58.105 43.478 0.00 0.00 0.00 2.78
1881 2179 6.939163 AGCAGTCAAAATAGAAACATCTGTCT 59.061 34.615 0.00 0.00 0.00 3.41
1884 2184 7.137490 TGAGCAGTCAAAATAGAAACATCTG 57.863 36.000 0.00 0.00 0.00 2.90
1899 2200 4.036380 CGGTATGTACAGTATGAGCAGTCA 59.964 45.833 0.33 0.00 39.69 3.41
1900 2201 4.036498 ACGGTATGTACAGTATGAGCAGTC 59.964 45.833 0.33 0.00 39.69 3.51
1925 2226 9.365311 CATCGAATTTGATACCGTTGTATTAAC 57.635 33.333 7.90 0.00 37.80 2.01
1936 2237 4.457810 CATGCGACATCGAATTTGATACC 58.542 43.478 7.90 2.77 43.02 2.73
1947 2248 0.165295 GATCATGGCATGCGACATCG 59.835 55.000 22.56 5.95 39.62 3.84
1985 2286 4.698201 TTGACACTGTCATTTGGAGGTA 57.302 40.909 12.71 0.00 42.40 3.08
1990 2291 3.318839 ACACCATTGACACTGTCATTTGG 59.681 43.478 25.97 25.97 44.54 3.28
2002 2323 0.242017 GCTTCAGCCACACCATTGAC 59.758 55.000 0.00 0.00 34.31 3.18
2006 2327 0.111061 TTCTGCTTCAGCCACACCAT 59.889 50.000 0.00 0.00 41.18 3.55
2007 2328 0.535780 CTTCTGCTTCAGCCACACCA 60.536 55.000 0.00 0.00 41.18 4.17
2009 2330 0.536006 ACCTTCTGCTTCAGCCACAC 60.536 55.000 0.00 0.00 41.18 3.82
2010 2331 0.535780 CACCTTCTGCTTCAGCCACA 60.536 55.000 0.00 0.00 41.18 4.17
2048 2378 1.010580 CTGATCTGCAGCAGCTTCAG 58.989 55.000 27.26 27.26 42.74 3.02
2081 2411 8.335356 TGAAAAGATCTTTAACACAGAAGAACG 58.665 33.333 20.76 0.00 35.69 3.95
2138 2468 7.275920 AGAGACATGCTATAATCCTTTTTCGT 58.724 34.615 0.00 0.00 0.00 3.85
2144 2474 8.709308 ACAGTTAAGAGACATGCTATAATCCTT 58.291 33.333 0.00 0.00 0.00 3.36
2155 2485 8.545229 AAGATCAAAGACAGTTAAGAGACATG 57.455 34.615 0.00 0.00 0.00 3.21
2156 2486 8.592809 AGAAGATCAAAGACAGTTAAGAGACAT 58.407 33.333 0.00 0.00 0.00 3.06
2181 2512 0.106868 TGCAGGGAAGCATCATGGAG 60.107 55.000 0.00 0.00 40.11 3.86
2187 2518 0.679002 TTGCTCTGCAGGGAAGCATC 60.679 55.000 24.32 4.70 44.68 3.91
2256 2613 2.099098 AGGACCTTCTGTTGCAAAAACG 59.901 45.455 0.00 0.00 0.00 3.60
2306 2663 9.638239 GTGCAAATGGATCTTAAGACATTTTAA 57.362 29.630 22.21 14.72 40.43 1.52
2310 2667 6.839124 TGTGCAAATGGATCTTAAGACATT 57.161 33.333 7.48 10.98 35.24 2.71
2342 2699 7.807977 ATGTAAACCATAAACTAGATGCCAG 57.192 36.000 0.00 0.00 29.82 4.85
2367 2724 5.848921 AGCTTCCTCATCCCTATCACTAATT 59.151 40.000 0.00 0.00 0.00 1.40
2368 2725 5.410602 AGCTTCCTCATCCCTATCACTAAT 58.589 41.667 0.00 0.00 0.00 1.73
2369 2726 4.820775 AGCTTCCTCATCCCTATCACTAA 58.179 43.478 0.00 0.00 0.00 2.24
2370 2727 4.107149 AGAGCTTCCTCATCCCTATCACTA 59.893 45.833 0.00 0.00 40.68 2.74
2371 2728 3.116784 AGAGCTTCCTCATCCCTATCACT 60.117 47.826 0.00 0.00 40.68 3.41
2372 2729 3.238597 AGAGCTTCCTCATCCCTATCAC 58.761 50.000 0.00 0.00 40.68 3.06
2373 2730 3.627041 AGAGCTTCCTCATCCCTATCA 57.373 47.619 0.00 0.00 40.68 2.15
2374 2731 5.542251 ACTTTAGAGCTTCCTCATCCCTATC 59.458 44.000 0.00 0.00 40.68 2.08
2382 2744 6.154706 CCCTTAAGTACTTTAGAGCTTCCTCA 59.845 42.308 20.46 0.00 40.68 3.86
2383 2745 6.380560 TCCCTTAAGTACTTTAGAGCTTCCTC 59.619 42.308 20.46 0.00 38.42 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.