Multiple sequence alignment - TraesCS1B01G376500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G376500 chr1B 100.000 2613 0 0 1 2613 608054861 608052249 0.000000e+00 4826.0
1 TraesCS1B01G376500 chr1B 83.770 1602 148 73 756 2298 610560515 610562063 0.000000e+00 1415.0
2 TraesCS1B01G376500 chr1B 83.218 1448 119 57 734 2119 607429788 607428403 0.000000e+00 1214.0
3 TraesCS1B01G376500 chr1B 90.484 641 43 8 1096 1721 608355307 608354670 0.000000e+00 830.0
4 TraesCS1B01G376500 chr1B 88.478 703 59 19 753 1447 608463161 608462473 0.000000e+00 830.0
5 TraesCS1B01G376500 chr1B 86.667 225 12 3 2090 2298 608354449 608354227 1.560000e-57 233.0
6 TraesCS1B01G376500 chr1B 94.891 137 7 0 2162 2298 607428391 607428255 5.660000e-52 215.0
7 TraesCS1B01G376500 chr1B 96.875 128 3 1 2381 2507 608354222 608354095 2.040000e-51 213.0
8 TraesCS1B01G376500 chr1B 97.959 98 2 0 2410 2507 607428251 607428154 1.240000e-38 171.0
9 TraesCS1B01G376500 chr1B 92.381 105 8 0 2278 2382 429603022 429603126 1.620000e-32 150.0
10 TraesCS1B01G376500 chr1D 85.705 1623 128 48 734 2300 355824991 355826565 0.000000e+00 1616.0
11 TraesCS1B01G376500 chr1D 84.125 1600 137 72 756 2298 446436834 446438373 0.000000e+00 1439.0
12 TraesCS1B01G376500 chr1D 86.641 786 72 23 734 1504 445387268 445386501 0.000000e+00 839.0
13 TraesCS1B01G376500 chr1D 82.458 895 70 46 1447 2300 445385238 445384390 0.000000e+00 702.0
14 TraesCS1B01G376500 chr1D 91.339 127 11 0 2381 2507 445384390 445384264 9.610000e-40 174.0
15 TraesCS1B01G376500 chr1D 88.618 123 11 2 160 281 355756730 355756850 2.100000e-31 147.0
16 TraesCS1B01G376500 chr1D 94.118 51 3 0 683 733 355824909 355824959 7.750000e-11 78.7
17 TraesCS1B01G376500 chr1D 78.448 116 12 7 213 316 246465533 246465419 2.170000e-06 63.9
18 TraesCS1B01G376500 chr1A 82.606 1834 162 51 734 2506 541319068 541320805 0.000000e+00 1474.0
19 TraesCS1B01G376500 chr1A 86.022 1252 89 32 734 1939 456650715 456651926 0.000000e+00 1264.0
20 TraesCS1B01G376500 chr1A 84.580 882 98 30 754 1619 542170103 542170962 0.000000e+00 841.0
21 TraesCS1B01G376500 chr1A 88.095 714 71 13 734 1439 541381081 541381788 0.000000e+00 835.0
22 TraesCS1B01G376500 chr1A 96.063 127 5 0 2381 2507 541462215 541462089 9.480000e-50 207.0
23 TraesCS1B01G376500 chr1A 84.158 202 16 1 2115 2300 456651934 456652135 5.740000e-42 182.0
24 TraesCS1B01G376500 chr1A 95.833 72 2 1 2229 2300 541462285 541462215 5.910000e-22 115.0
25 TraesCS1B01G376500 chr1A 95.833 48 2 0 676 723 456650623 456650670 7.750000e-11 78.7
26 TraesCS1B01G376500 chr1A 82.432 74 11 2 158 230 95111229 95111301 2.170000e-06 63.9
27 TraesCS1B01G376500 chr2B 80.684 1403 136 70 924 2284 161026369 161027678 0.000000e+00 965.0
28 TraesCS1B01G376500 chr2B 97.727 88 2 0 2297 2384 799148771 799148684 4.500000e-33 152.0
29 TraesCS1B01G376500 chr3D 86.822 774 58 32 892 1646 114883233 114882485 0.000000e+00 824.0
30 TraesCS1B01G376500 chr3D 93.750 96 4 2 1527 1622 114886455 114886362 2.710000e-30 143.0
31 TraesCS1B01G376500 chr3D 78.667 225 27 10 1860 2068 114882244 114882025 2.110000e-26 130.0
32 TraesCS1B01G376500 chr3D 87.952 83 9 1 1852 1933 214364326 214364244 2.140000e-16 97.1
33 TraesCS1B01G376500 chr3A 86.623 770 61 35 899 1646 111106317 111105568 0.000000e+00 813.0
34 TraesCS1B01G376500 chr3B 87.349 664 57 25 1001 1646 168140448 168139794 0.000000e+00 736.0
35 TraesCS1B01G376500 chr3B 91.346 104 8 1 1527 1630 168146568 168146466 9.750000e-30 141.0
36 TraesCS1B01G376500 chr3B 78.400 125 23 4 82 205 410108370 410108491 7.750000e-11 78.7
37 TraesCS1B01G376500 chr6A 82.220 928 84 43 757 1641 67142335 67141446 0.000000e+00 725.0
38 TraesCS1B01G376500 chr7A 94.783 115 5 1 2499 2613 619152678 619152565 7.430000e-41 178.0
39 TraesCS1B01G376500 chr7A 78.049 123 19 6 83 204 209593653 209593768 1.300000e-08 71.3
40 TraesCS1B01G376500 chr5A 94.286 105 5 1 2282 2385 309680161 309680265 2.690000e-35 159.0
41 TraesCS1B01G376500 chr5B 96.809 94 3 0 2289 2382 393069283 393069190 9.680000e-35 158.0
42 TraesCS1B01G376500 chr5B 85.294 68 9 1 130 197 635197242 635197308 4.670000e-08 69.4
43 TraesCS1B01G376500 chr5D 97.778 90 2 0 2296 2385 496216343 496216254 3.480000e-34 156.0
44 TraesCS1B01G376500 chr5D 95.789 95 2 1 2297 2391 276292518 276292426 4.500000e-33 152.0
45 TraesCS1B01G376500 chr5D 71.630 497 78 42 28 479 397019831 397019353 7.750000e-11 78.7
46 TraesCS1B01G376500 chr4D 94.059 101 6 0 2285 2385 486768031 486767931 1.250000e-33 154.0
47 TraesCS1B01G376500 chr2A 94.737 95 3 2 2291 2385 618434232 618434140 2.100000e-31 147.0
48 TraesCS1B01G376500 chr2A 97.727 44 1 0 2295 2338 779643755 779643712 2.790000e-10 76.8
49 TraesCS1B01G376500 chr6B 80.000 115 19 4 91 205 195966618 195966508 5.990000e-12 82.4
50 TraesCS1B01G376500 chr6B 86.765 68 7 2 130 197 195884798 195884733 1.000000e-09 75.0
51 TraesCS1B01G376500 chr7D 78.102 137 23 7 71 205 86077703 86077834 2.160000e-11 80.5
52 TraesCS1B01G376500 chr7D 78.400 125 20 7 84 205 557867774 557867894 1.000000e-09 75.0
53 TraesCS1B01G376500 chr4B 82.927 82 13 1 124 205 89449861 89449781 3.610000e-09 73.1
54 TraesCS1B01G376500 chr2D 83.117 77 10 3 129 204 9563202 9563128 1.680000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G376500 chr1B 608052249 608054861 2612 True 4826.000000 4826 100.000000 1 2613 1 chr1B.!!$R1 2612
1 TraesCS1B01G376500 chr1B 610560515 610562063 1548 False 1415.000000 1415 83.770000 756 2298 1 chr1B.!!$F2 1542
2 TraesCS1B01G376500 chr1B 608462473 608463161 688 True 830.000000 830 88.478000 753 1447 1 chr1B.!!$R2 694
3 TraesCS1B01G376500 chr1B 607428154 607429788 1634 True 533.333333 1214 92.022667 734 2507 3 chr1B.!!$R3 1773
4 TraesCS1B01G376500 chr1B 608354095 608355307 1212 True 425.333333 830 91.342000 1096 2507 3 chr1B.!!$R4 1411
5 TraesCS1B01G376500 chr1D 446436834 446438373 1539 False 1439.000000 1439 84.125000 756 2298 1 chr1D.!!$F2 1542
6 TraesCS1B01G376500 chr1D 355824909 355826565 1656 False 847.350000 1616 89.911500 683 2300 2 chr1D.!!$F3 1617
7 TraesCS1B01G376500 chr1D 445384264 445387268 3004 True 571.666667 839 86.812667 734 2507 3 chr1D.!!$R2 1773
8 TraesCS1B01G376500 chr1A 541319068 541320805 1737 False 1474.000000 1474 82.606000 734 2506 1 chr1A.!!$F2 1772
9 TraesCS1B01G376500 chr1A 542170103 542170962 859 False 841.000000 841 84.580000 754 1619 1 chr1A.!!$F4 865
10 TraesCS1B01G376500 chr1A 541381081 541381788 707 False 835.000000 835 88.095000 734 1439 1 chr1A.!!$F3 705
11 TraesCS1B01G376500 chr1A 456650623 456652135 1512 False 508.233333 1264 88.671000 676 2300 3 chr1A.!!$F5 1624
12 TraesCS1B01G376500 chr2B 161026369 161027678 1309 False 965.000000 965 80.684000 924 2284 1 chr2B.!!$F1 1360
13 TraesCS1B01G376500 chr3D 114882025 114886455 4430 True 365.666667 824 86.413000 892 2068 3 chr3D.!!$R2 1176
14 TraesCS1B01G376500 chr3A 111105568 111106317 749 True 813.000000 813 86.623000 899 1646 1 chr3A.!!$R1 747
15 TraesCS1B01G376500 chr3B 168139794 168140448 654 True 736.000000 736 87.349000 1001 1646 1 chr3B.!!$R1 645
16 TraesCS1B01G376500 chr6A 67141446 67142335 889 True 725.000000 725 82.220000 757 1641 1 chr6A.!!$R1 884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
855 892 0.179062 ACGCTCCATGCTCATCTTCC 60.179 55.0 0.0 0.0 40.11 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 5965 0.108992 TTGTCGGTGATGCGACCTAC 60.109 55.0 0.0 0.0 33.29 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 9.831737 TTTTCAAAAATGTTAAAATGTGTGTGG 57.168 25.926 0.00 0.00 0.00 4.17
150 151 8.777865 TTCAAAAATGTTAAAATGTGTGTGGA 57.222 26.923 0.00 0.00 0.00 4.02
151 152 8.777865 TCAAAAATGTTAAAATGTGTGTGGAA 57.222 26.923 0.00 0.00 0.00 3.53
155 156 7.727331 AATGTTAAAATGTGTGTGGAAATGG 57.273 32.000 0.00 0.00 0.00 3.16
156 157 6.227298 TGTTAAAATGTGTGTGGAAATGGT 57.773 33.333 0.00 0.00 0.00 3.55
160 161 8.707839 GTTAAAATGTGTGTGGAAATGGTATTG 58.292 33.333 0.00 0.00 0.00 1.90
161 162 6.662865 AAATGTGTGTGGAAATGGTATTGA 57.337 33.333 0.00 0.00 0.00 2.57
162 163 5.643379 ATGTGTGTGGAAATGGTATTGAC 57.357 39.130 0.00 0.00 0.00 3.18
163 164 3.500299 TGTGTGTGGAAATGGTATTGACG 59.500 43.478 0.00 0.00 0.00 4.35
164 165 3.749088 GTGTGTGGAAATGGTATTGACGA 59.251 43.478 0.00 0.00 0.00 4.20
165 166 4.394920 GTGTGTGGAAATGGTATTGACGAT 59.605 41.667 0.00 0.00 0.00 3.73
166 167 4.394610 TGTGTGGAAATGGTATTGACGATG 59.605 41.667 0.00 0.00 0.00 3.84
171 172 7.988028 TGTGGAAATGGTATTGACGATGTATTA 59.012 33.333 0.00 0.00 0.00 0.98
255 256 6.673106 TGTACGAAAAATGTACAATGTGCAT 58.327 32.000 11.13 11.13 46.62 3.96
256 257 6.580416 TGTACGAAAAATGTACAATGTGCATG 59.420 34.615 17.19 7.35 46.62 4.06
257 258 4.922692 ACGAAAAATGTACAATGTGCATGG 59.077 37.500 17.19 7.66 37.86 3.66
258 259 5.159925 CGAAAAATGTACAATGTGCATGGA 58.840 37.500 17.19 0.00 37.86 3.41
259 260 5.632764 CGAAAAATGTACAATGTGCATGGAA 59.367 36.000 17.19 0.00 37.86 3.53
260 261 6.145209 CGAAAAATGTACAATGTGCATGGAAA 59.855 34.615 17.19 0.00 37.86 3.13
261 262 7.307042 CGAAAAATGTACAATGTGCATGGAAAA 60.307 33.333 17.19 0.00 37.86 2.29
262 263 7.798596 AAAATGTACAATGTGCATGGAAAAA 57.201 28.000 17.19 0.00 37.86 1.94
351 352 9.908152 TCGATATATACGAAAGATGTTGAATGT 57.092 29.630 0.00 0.00 36.84 2.71
360 361 9.180678 ACGAAAGATGTTGAATGTTATTGAAAC 57.819 29.630 0.00 0.00 0.00 2.78
361 362 9.179552 CGAAAGATGTTGAATGTTATTGAAACA 57.820 29.630 0.00 0.00 32.60 2.83
365 366 9.903682 AGATGTTGAATGTTATTGAAACAAGAG 57.096 29.630 0.00 0.00 33.42 2.85
454 455 9.750125 ACCAAAGTTAGATGATGAAAGAAAAAC 57.250 29.630 0.00 0.00 0.00 2.43
455 456 8.905702 CCAAAGTTAGATGATGAAAGAAAAACG 58.094 33.333 0.00 0.00 0.00 3.60
456 457 8.905702 CAAAGTTAGATGATGAAAGAAAAACGG 58.094 33.333 0.00 0.00 0.00 4.44
457 458 7.979444 AGTTAGATGATGAAAGAAAAACGGA 57.021 32.000 0.00 0.00 0.00 4.69
458 459 8.391075 AGTTAGATGATGAAAGAAAAACGGAA 57.609 30.769 0.00 0.00 0.00 4.30
459 460 8.507249 AGTTAGATGATGAAAGAAAAACGGAAG 58.493 33.333 0.00 0.00 0.00 3.46
460 461 8.504005 GTTAGATGATGAAAGAAAAACGGAAGA 58.496 33.333 0.00 0.00 0.00 2.87
461 462 7.510549 AGATGATGAAAGAAAAACGGAAGAA 57.489 32.000 0.00 0.00 0.00 2.52
462 463 7.940850 AGATGATGAAAGAAAAACGGAAGAAA 58.059 30.769 0.00 0.00 0.00 2.52
463 464 8.413229 AGATGATGAAAGAAAAACGGAAGAAAA 58.587 29.630 0.00 0.00 0.00 2.29
464 465 9.196552 GATGATGAAAGAAAAACGGAAGAAAAT 57.803 29.630 0.00 0.00 0.00 1.82
465 466 8.574196 TGATGAAAGAAAAACGGAAGAAAATC 57.426 30.769 0.00 0.00 0.00 2.17
466 467 8.194104 TGATGAAAGAAAAACGGAAGAAAATCA 58.806 29.630 0.00 0.00 0.00 2.57
467 468 7.985634 TGAAAGAAAAACGGAAGAAAATCAG 57.014 32.000 0.00 0.00 0.00 2.90
470 471 6.693315 AGAAAAACGGAAGAAAATCAGTGA 57.307 33.333 0.00 0.00 0.00 3.41
471 472 7.095695 AGAAAAACGGAAGAAAATCAGTGAA 57.904 32.000 0.00 0.00 0.00 3.18
472 473 7.543756 AGAAAAACGGAAGAAAATCAGTGAAA 58.456 30.769 0.00 0.00 0.00 2.69
473 474 8.032451 AGAAAAACGGAAGAAAATCAGTGAAAA 58.968 29.630 0.00 0.00 0.00 2.29
474 475 8.541133 AAAAACGGAAGAAAATCAGTGAAAAA 57.459 26.923 0.00 0.00 0.00 1.94
475 476 7.520119 AAACGGAAGAAAATCAGTGAAAAAC 57.480 32.000 0.00 0.00 0.00 2.43
476 477 6.202516 ACGGAAGAAAATCAGTGAAAAACA 57.797 33.333 0.00 0.00 0.00 2.83
477 478 6.626302 ACGGAAGAAAATCAGTGAAAAACAA 58.374 32.000 0.00 0.00 0.00 2.83
480 481 8.603181 CGGAAGAAAATCAGTGAAAAACAAATT 58.397 29.630 0.00 0.00 0.00 1.82
508 509 9.733556 ATAACCAAAAATAACCCCAAAGAAATC 57.266 29.630 0.00 0.00 0.00 2.17
509 510 7.387265 ACCAAAAATAACCCCAAAGAAATCT 57.613 32.000 0.00 0.00 0.00 2.40
510 511 7.223584 ACCAAAAATAACCCCAAAGAAATCTG 58.776 34.615 0.00 0.00 0.00 2.90
511 512 6.654582 CCAAAAATAACCCCAAAGAAATCTGG 59.345 38.462 0.00 0.00 0.00 3.86
513 514 6.358974 AAATAACCCCAAAGAAATCTGGTG 57.641 37.500 0.00 0.00 0.00 4.17
514 515 3.611025 AACCCCAAAGAAATCTGGTGA 57.389 42.857 0.00 0.00 0.00 4.02
515 516 3.611025 ACCCCAAAGAAATCTGGTGAA 57.389 42.857 0.00 0.00 0.00 3.18
518 519 4.151883 CCCCAAAGAAATCTGGTGAAGAA 58.848 43.478 0.00 0.00 38.79 2.52
520 521 5.070313 CCCCAAAGAAATCTGGTGAAGAAAA 59.930 40.000 0.00 0.00 38.79 2.29
522 523 6.703165 CCCAAAGAAATCTGGTGAAGAAAAAG 59.297 38.462 0.00 0.00 38.79 2.27
524 525 8.146412 CCAAAGAAATCTGGTGAAGAAAAAGAT 58.854 33.333 0.00 0.00 38.79 2.40
527 528 9.799106 AAGAAATCTGGTGAAGAAAAAGATAGA 57.201 29.630 0.00 0.00 38.79 1.98
528 529 9.799106 AGAAATCTGGTGAAGAAAAAGATAGAA 57.201 29.630 0.00 0.00 38.79 2.10
533 534 9.184523 TCTGGTGAAGAAAAAGATAGAAAAACA 57.815 29.630 0.00 0.00 29.54 2.83
534 535 9.801873 CTGGTGAAGAAAAAGATAGAAAAACAA 57.198 29.630 0.00 0.00 0.00 2.83
549 550 9.863845 ATAGAAAAACAAAGAAAGGAAAACGAA 57.136 25.926 0.00 0.00 0.00 3.85
552 553 8.996988 AAAAACAAAGAAAGGAAAACGAAAAC 57.003 26.923 0.00 0.00 0.00 2.43
553 554 6.715344 AACAAAGAAAGGAAAACGAAAACC 57.285 33.333 0.00 0.00 0.00 3.27
555 556 6.224584 ACAAAGAAAGGAAAACGAAAACCAA 58.775 32.000 0.00 0.00 0.00 3.67
556 557 6.706716 ACAAAGAAAGGAAAACGAAAACCAAA 59.293 30.769 0.00 0.00 0.00 3.28
560 561 5.408880 AAGGAAAACGAAAACCAAAGGAA 57.591 34.783 0.00 0.00 0.00 3.36
585 586 8.789825 AAAAATAAAACCCAGTTAAAACCGTT 57.210 26.923 0.00 0.00 0.00 4.44
587 588 3.804786 AAACCCAGTTAAAACCGTTGG 57.195 42.857 0.00 0.00 0.00 3.77
588 589 2.732844 ACCCAGTTAAAACCGTTGGA 57.267 45.000 2.15 0.00 0.00 3.53
589 590 3.015675 ACCCAGTTAAAACCGTTGGAA 57.984 42.857 2.15 0.00 0.00 3.53
591 592 4.727677 ACCCAGTTAAAACCGTTGGAATA 58.272 39.130 2.15 0.00 0.00 1.75
592 593 4.520111 ACCCAGTTAAAACCGTTGGAATAC 59.480 41.667 2.15 0.00 0.00 1.89
596 597 6.427547 CCAGTTAAAACCGTTGGAATACAGTA 59.572 38.462 0.00 0.00 0.00 2.74
597 598 7.041235 CCAGTTAAAACCGTTGGAATACAGTAA 60.041 37.037 0.00 0.00 0.00 2.24
598 599 8.344098 CAGTTAAAACCGTTGGAATACAGTAAA 58.656 33.333 0.00 0.00 0.00 2.01
599 600 8.901793 AGTTAAAACCGTTGGAATACAGTAAAA 58.098 29.630 0.00 0.00 0.00 1.52
601 602 5.694231 AACCGTTGGAATACAGTAAAACC 57.306 39.130 0.00 0.00 0.00 3.27
604 605 5.593502 ACCGTTGGAATACAGTAAAACCAAA 59.406 36.000 14.13 2.33 38.75 3.28
605 606 6.146898 CCGTTGGAATACAGTAAAACCAAAG 58.853 40.000 14.13 14.95 38.75 2.77
606 607 6.016943 CCGTTGGAATACAGTAAAACCAAAGA 60.017 38.462 20.17 2.68 38.45 2.52
607 608 7.419204 CGTTGGAATACAGTAAAACCAAAGAA 58.581 34.615 16.69 0.00 38.45 2.52
608 609 7.916450 CGTTGGAATACAGTAAAACCAAAGAAA 59.084 33.333 16.69 0.00 38.45 2.52
609 610 9.589111 GTTGGAATACAGTAAAACCAAAGAAAA 57.411 29.630 14.13 0.00 38.75 2.29
616 617 8.317891 ACAGTAAAACCAAAGAAAAACAAAGG 57.682 30.769 0.00 0.00 0.00 3.11
618 619 8.994170 CAGTAAAACCAAAGAAAAACAAAGGAA 58.006 29.630 0.00 0.00 0.00 3.36
619 620 9.562408 AGTAAAACCAAAGAAAAACAAAGGAAA 57.438 25.926 0.00 0.00 0.00 3.13
622 623 8.684386 AAACCAAAGAAAAACAAAGGAAAAGA 57.316 26.923 0.00 0.00 0.00 2.52
624 625 6.878923 ACCAAAGAAAAACAAAGGAAAAGAGG 59.121 34.615 0.00 0.00 0.00 3.69
625 626 7.102993 CCAAAGAAAAACAAAGGAAAAGAGGA 58.897 34.615 0.00 0.00 0.00 3.71
626 627 7.606073 CCAAAGAAAAACAAAGGAAAAGAGGAA 59.394 33.333 0.00 0.00 0.00 3.36
627 628 8.443160 CAAAGAAAAACAAAGGAAAAGAGGAAC 58.557 33.333 0.00 0.00 0.00 3.62
629 630 7.323420 AGAAAAACAAAGGAAAAGAGGAACTG 58.677 34.615 0.00 0.00 41.55 3.16
630 631 6.850752 AAAACAAAGGAAAAGAGGAACTGA 57.149 33.333 0.00 0.00 41.55 3.41
632 633 6.850752 AACAAAGGAAAAGAGGAACTGAAA 57.149 33.333 0.00 0.00 41.55 2.69
633 634 6.850752 ACAAAGGAAAAGAGGAACTGAAAA 57.149 33.333 0.00 0.00 41.55 2.29
654 655 4.320608 AAAAAGCCATGAAAGCGAGAAA 57.679 36.364 0.00 0.00 34.64 2.52
656 657 4.525912 AAAGCCATGAAAGCGAGAAAAT 57.474 36.364 0.00 0.00 34.64 1.82
657 658 3.772060 AGCCATGAAAGCGAGAAAATC 57.228 42.857 0.00 0.00 34.64 2.17
791 827 1.423794 AAACACCACCCCACGGATCT 61.424 55.000 0.00 0.00 0.00 2.75
812 848 3.318313 TCTCCCTCCATACCAAATCTCC 58.682 50.000 0.00 0.00 0.00 3.71
844 880 2.108514 CACGCATCCAACGCTCCAT 61.109 57.895 0.00 0.00 0.00 3.41
854 891 1.329906 CAACGCTCCATGCTCATCTTC 59.670 52.381 0.00 0.00 40.11 2.87
855 892 0.179062 ACGCTCCATGCTCATCTTCC 60.179 55.000 0.00 0.00 40.11 3.46
856 893 0.883814 CGCTCCATGCTCATCTTCCC 60.884 60.000 0.00 0.00 40.11 3.97
857 894 0.473326 GCTCCATGCTCATCTTCCCT 59.527 55.000 0.00 0.00 38.95 4.20
858 895 1.814634 GCTCCATGCTCATCTTCCCTG 60.815 57.143 0.00 0.00 38.95 4.45
859 896 0.182061 TCCATGCTCATCTTCCCTGC 59.818 55.000 0.00 0.00 0.00 4.85
860 897 0.183014 CCATGCTCATCTTCCCTGCT 59.817 55.000 0.00 0.00 0.00 4.24
861 898 1.309950 CATGCTCATCTTCCCTGCTG 58.690 55.000 0.00 0.00 0.00 4.41
863 900 0.986527 TGCTCATCTTCCCTGCTGAA 59.013 50.000 0.00 0.00 0.00 3.02
865 902 2.224843 TGCTCATCTTCCCTGCTGAAAA 60.225 45.455 0.00 0.00 0.00 2.29
866 903 2.422832 GCTCATCTTCCCTGCTGAAAAG 59.577 50.000 0.00 0.00 0.00 2.27
867 904 2.422832 CTCATCTTCCCTGCTGAAAAGC 59.577 50.000 0.00 0.00 0.00 3.51
869 906 2.363306 TCTTCCCTGCTGAAAAGCAA 57.637 45.000 1.61 0.00 44.88 3.91
870 907 2.665165 TCTTCCCTGCTGAAAAGCAAA 58.335 42.857 1.61 0.00 44.88 3.68
872 909 2.888834 TCCCTGCTGAAAAGCAAAAC 57.111 45.000 1.61 0.00 44.88 2.43
873 910 2.387757 TCCCTGCTGAAAAGCAAAACT 58.612 42.857 1.61 0.00 44.88 2.66
874 911 2.362077 TCCCTGCTGAAAAGCAAAACTC 59.638 45.455 1.61 0.00 44.88 3.01
875 912 2.101249 CCCTGCTGAAAAGCAAAACTCA 59.899 45.455 1.61 0.00 44.88 3.41
876 913 3.118542 CCTGCTGAAAAGCAAAACTCAC 58.881 45.455 1.61 0.00 44.88 3.51
877 914 2.785477 CTGCTGAAAAGCAAAACTCACG 59.215 45.455 1.61 0.00 44.88 4.35
878 915 1.518515 GCTGAAAAGCAAAACTCACGC 59.481 47.619 0.00 0.00 34.41 5.34
879 916 1.775208 CTGAAAAGCAAAACTCACGCG 59.225 47.619 3.53 3.53 0.00 6.01
880 917 0.498511 GAAAAGCAAAACTCACGCGC 59.501 50.000 5.73 0.00 0.00 6.86
881 918 0.869880 AAAAGCAAAACTCACGCGCC 60.870 50.000 5.73 0.00 0.00 6.53
882 919 2.677573 AAAGCAAAACTCACGCGCCC 62.678 55.000 5.73 0.00 0.00 6.13
883 920 3.660111 GCAAAACTCACGCGCCCT 61.660 61.111 5.73 0.00 0.00 5.19
884 921 2.556287 CAAAACTCACGCGCCCTC 59.444 61.111 5.73 0.00 0.00 4.30
885 922 2.668550 AAAACTCACGCGCCCTCC 60.669 61.111 5.73 0.00 0.00 4.30
886 923 4.699522 AAACTCACGCGCCCTCCC 62.700 66.667 5.73 0.00 0.00 4.30
994 3375 3.283684 CCCAAGCGCGACAACCAA 61.284 61.111 12.10 0.00 0.00 3.67
1004 3388 2.027625 GACAACCAACTCCGCCTCG 61.028 63.158 0.00 0.00 0.00 4.63
1355 3742 0.321653 GGCTGTTCGAGGACACCAAT 60.322 55.000 0.00 0.00 0.00 3.16
1631 5413 1.863454 CCTGTTCTCATACATCTGCGC 59.137 52.381 0.00 0.00 0.00 6.09
1632 5414 1.863454 CTGTTCTCATACATCTGCGCC 59.137 52.381 4.18 0.00 0.00 6.53
1688 5504 5.994054 TGCCTGATTTAGCTAGCTTATTCTG 59.006 40.000 24.88 20.47 0.00 3.02
1757 5600 2.103373 CTAGTAGCTGCCTCTGAACCA 58.897 52.381 0.00 0.00 0.00 3.67
1775 5632 2.223876 ACCAGAACGAACGAGCAGTTAA 60.224 45.455 0.14 0.00 44.35 2.01
1776 5633 2.408704 CCAGAACGAACGAGCAGTTAAG 59.591 50.000 0.14 0.00 44.35 1.85
1777 5634 3.305964 CAGAACGAACGAGCAGTTAAGA 58.694 45.455 0.14 0.00 44.35 2.10
1778 5635 3.921021 CAGAACGAACGAGCAGTTAAGAT 59.079 43.478 0.14 0.00 44.35 2.40
1779 5636 3.921021 AGAACGAACGAGCAGTTAAGATG 59.079 43.478 0.14 0.00 44.35 2.90
1780 5637 2.607187 ACGAACGAGCAGTTAAGATGG 58.393 47.619 0.14 0.00 44.35 3.51
1781 5638 2.029290 ACGAACGAGCAGTTAAGATGGT 60.029 45.455 0.14 0.00 44.35 3.55
1782 5639 2.345641 CGAACGAGCAGTTAAGATGGTG 59.654 50.000 0.00 0.00 44.35 4.17
1783 5640 1.726853 ACGAGCAGTTAAGATGGTGC 58.273 50.000 0.00 0.00 36.10 5.01
1784 5641 1.009829 CGAGCAGTTAAGATGGTGCC 58.990 55.000 0.00 0.00 36.54 5.01
1785 5642 1.406069 CGAGCAGTTAAGATGGTGCCT 60.406 52.381 0.00 0.00 36.54 4.75
1786 5643 2.012673 GAGCAGTTAAGATGGTGCCTG 58.987 52.381 0.00 0.00 36.54 4.85
1787 5644 1.098050 GCAGTTAAGATGGTGCCTGG 58.902 55.000 0.00 0.00 0.00 4.45
1788 5645 1.340017 GCAGTTAAGATGGTGCCTGGA 60.340 52.381 0.00 0.00 0.00 3.86
1789 5646 2.879756 GCAGTTAAGATGGTGCCTGGAA 60.880 50.000 0.00 0.00 0.00 3.53
1850 5733 4.625742 CGTCTATCGACCAGTTTGATGTTT 59.374 41.667 0.00 0.00 42.86 2.83
1904 5799 9.277783 CTACTTTGCCTAATTATACTGCAATCT 57.722 33.333 10.64 4.72 41.12 2.40
1906 5807 7.229506 ACTTTGCCTAATTATACTGCAATCTCC 59.770 37.037 10.64 0.00 41.12 3.71
1913 5814 3.567478 ATACTGCAATCTCCCAAGTCC 57.433 47.619 0.00 0.00 0.00 3.85
1934 5859 3.875727 CCATGAACCATGCTCTGAACTAG 59.124 47.826 0.00 0.00 40.20 2.57
1935 5860 4.511527 CATGAACCATGCTCTGAACTAGT 58.488 43.478 0.00 0.00 35.02 2.57
1937 5862 5.073311 TGAACCATGCTCTGAACTAGTAC 57.927 43.478 0.00 0.00 0.00 2.73
1938 5863 4.526650 TGAACCATGCTCTGAACTAGTACA 59.473 41.667 0.00 0.00 0.00 2.90
1939 5864 5.011635 TGAACCATGCTCTGAACTAGTACAA 59.988 40.000 0.00 0.00 0.00 2.41
1940 5865 5.078411 ACCATGCTCTGAACTAGTACAAG 57.922 43.478 0.00 0.00 0.00 3.16
1941 5866 4.528596 ACCATGCTCTGAACTAGTACAAGT 59.471 41.667 0.00 0.00 0.00 3.16
1945 5870 6.896021 TGCTCTGAACTAGTACAAGTTACT 57.104 37.500 0.00 0.00 39.78 2.24
1947 5872 7.145985 TGCTCTGAACTAGTACAAGTTACTTG 58.854 38.462 21.90 21.90 45.85 3.16
1948 5873 6.586844 GCTCTGAACTAGTACAAGTTACTTGG 59.413 42.308 26.09 12.25 44.81 3.61
1980 5919 3.118811 CCCTGTCTTCAGATCTTCAGGTC 60.119 52.174 18.11 6.85 43.76 3.85
2022 5963 2.014128 ACACCGTGCCTGCAATATTAC 58.986 47.619 0.00 0.00 0.00 1.89
2023 5964 2.013400 CACCGTGCCTGCAATATTACA 58.987 47.619 0.00 0.00 0.00 2.41
2024 5965 2.032054 CACCGTGCCTGCAATATTACAG 59.968 50.000 8.51 8.51 0.00 2.74
2025 5966 2.288666 CCGTGCCTGCAATATTACAGT 58.711 47.619 13.48 0.00 31.76 3.55
2026 5967 3.118555 ACCGTGCCTGCAATATTACAGTA 60.119 43.478 13.48 1.41 31.76 2.74
2030 5971 4.511826 GTGCCTGCAATATTACAGTAGGTC 59.488 45.833 13.48 5.75 37.45 3.85
2039 5980 0.736636 TACAGTAGGTCGCATCACCG 59.263 55.000 0.00 0.00 41.90 4.94
2077 6021 1.260538 ACCAGAGCATCGAGGAAGCA 61.261 55.000 0.00 0.00 42.67 3.91
2274 6256 6.884280 AGCTACTGTGTTCTTAATTGCTTT 57.116 33.333 0.00 0.00 0.00 3.51
2309 6291 7.147532 ACCTTATAAATGGTACTCCCTCAGTTC 60.148 40.741 0.00 0.00 36.43 3.01
2310 6292 5.632034 ATAAATGGTACTCCCTCAGTTCC 57.368 43.478 0.00 0.00 41.90 3.62
2314 6296 4.280789 TGGTACTCCCTCAGTTCCATAT 57.719 45.455 0.00 0.00 45.26 1.78
2315 6297 4.631234 TGGTACTCCCTCAGTTCCATATT 58.369 43.478 0.00 0.00 45.26 1.28
2317 6299 5.601313 TGGTACTCCCTCAGTTCCATATTAC 59.399 44.000 0.00 0.00 45.26 1.89
2318 6300 5.839606 GGTACTCCCTCAGTTCCATATTACT 59.160 44.000 0.00 0.00 41.32 2.24
2319 6301 6.015265 GGTACTCCCTCAGTTCCATATTACTC 60.015 46.154 0.00 0.00 41.32 2.59
2320 6302 4.585162 ACTCCCTCAGTTCCATATTACTCG 59.415 45.833 0.00 0.00 26.56 4.18
2321 6303 4.543689 TCCCTCAGTTCCATATTACTCGT 58.456 43.478 0.00 0.00 0.00 4.18
2322 6304 4.583489 TCCCTCAGTTCCATATTACTCGTC 59.417 45.833 0.00 0.00 0.00 4.20
2323 6305 4.537965 CCTCAGTTCCATATTACTCGTCG 58.462 47.826 0.00 0.00 0.00 5.12
2327 6309 3.630769 AGTTCCATATTACTCGTCGCTGA 59.369 43.478 0.00 0.00 0.00 4.26
2334 6316 7.173735 TCCATATTACTCGTCGCTGATTTAGTA 59.826 37.037 0.00 0.00 0.00 1.82
2338 6320 4.164294 ACTCGTCGCTGATTTAGTACAAC 58.836 43.478 0.00 0.00 0.00 3.32
2343 6325 5.107607 CGTCGCTGATTTAGTACAACTTTGT 60.108 40.000 0.00 0.00 44.86 2.83
2358 6340 5.756347 ACAACTTTGTACTAAATCAGCGACA 59.244 36.000 0.00 0.00 40.16 4.35
2365 6347 9.642327 TTTGTACTAAATCAGCGACAAGTAATA 57.358 29.630 0.00 0.00 35.77 0.98
2377 6359 4.377897 GACAAGTAATATGGAACGGAGGG 58.622 47.826 0.00 0.00 0.00 4.30
2417 6405 8.734030 CAAAATTCTTCGAAATAACTATTCCGC 58.266 33.333 0.00 0.00 0.00 5.54
2507 6496 5.769662 ACATAAACAGTGCTTTCCTGATGAA 59.230 36.000 0.00 0.00 34.04 2.57
2508 6497 4.843220 AAACAGTGCTTTCCTGATGAAG 57.157 40.909 0.00 0.00 33.63 3.02
2517 6506 3.869623 CCTGATGAAGGTGTGGGAG 57.130 57.895 0.00 0.00 41.74 4.30
2518 6507 0.393537 CCTGATGAAGGTGTGGGAGC 60.394 60.000 0.00 0.00 41.74 4.70
2519 6508 0.617413 CTGATGAAGGTGTGGGAGCT 59.383 55.000 0.00 0.00 0.00 4.09
2520 6509 1.833630 CTGATGAAGGTGTGGGAGCTA 59.166 52.381 0.00 0.00 0.00 3.32
2521 6510 1.555075 TGATGAAGGTGTGGGAGCTAC 59.445 52.381 0.00 0.00 0.00 3.58
2522 6511 1.555075 GATGAAGGTGTGGGAGCTACA 59.445 52.381 0.00 0.00 0.00 2.74
2523 6512 0.976641 TGAAGGTGTGGGAGCTACAG 59.023 55.000 0.00 0.00 0.00 2.74
2524 6513 0.391793 GAAGGTGTGGGAGCTACAGC 60.392 60.000 8.88 8.88 44.52 4.40
2538 6527 4.125912 GCTACAGCTGCAATTATTCGAG 57.874 45.455 15.27 0.00 38.21 4.04
2539 6528 3.804325 GCTACAGCTGCAATTATTCGAGA 59.196 43.478 15.27 0.00 38.21 4.04
2540 6529 4.450419 GCTACAGCTGCAATTATTCGAGAT 59.550 41.667 15.27 0.00 38.21 2.75
2541 6530 4.808077 ACAGCTGCAATTATTCGAGATG 57.192 40.909 15.27 0.00 0.00 2.90
2542 6531 3.562973 ACAGCTGCAATTATTCGAGATGG 59.437 43.478 15.27 0.00 0.00 3.51
2543 6532 3.811497 CAGCTGCAATTATTCGAGATGGA 59.189 43.478 0.00 0.00 0.00 3.41
2544 6533 4.274214 CAGCTGCAATTATTCGAGATGGAA 59.726 41.667 0.00 0.00 0.00 3.53
2545 6534 4.514441 AGCTGCAATTATTCGAGATGGAAG 59.486 41.667 1.02 0.00 0.00 3.46
2546 6535 4.512944 GCTGCAATTATTCGAGATGGAAGA 59.487 41.667 0.00 0.00 0.00 2.87
2547 6536 5.333952 GCTGCAATTATTCGAGATGGAAGAG 60.334 44.000 0.00 0.00 0.00 2.85
2548 6537 5.059161 TGCAATTATTCGAGATGGAAGAGG 58.941 41.667 0.00 0.00 0.00 3.69
2549 6538 5.059833 GCAATTATTCGAGATGGAAGAGGT 58.940 41.667 0.00 0.00 0.00 3.85
2550 6539 6.183360 TGCAATTATTCGAGATGGAAGAGGTA 60.183 38.462 0.00 0.00 0.00 3.08
2551 6540 6.706270 GCAATTATTCGAGATGGAAGAGGTAA 59.294 38.462 0.00 0.00 0.00 2.85
2552 6541 7.389053 GCAATTATTCGAGATGGAAGAGGTAAT 59.611 37.037 0.00 0.00 0.00 1.89
2553 6542 9.277783 CAATTATTCGAGATGGAAGAGGTAATT 57.722 33.333 0.00 0.00 0.00 1.40
2554 6543 9.853177 AATTATTCGAGATGGAAGAGGTAATTT 57.147 29.630 0.00 0.00 0.00 1.82
2555 6544 9.853177 ATTATTCGAGATGGAAGAGGTAATTTT 57.147 29.630 0.00 0.00 0.00 1.82
2556 6545 7.793927 ATTCGAGATGGAAGAGGTAATTTTC 57.206 36.000 0.00 0.00 0.00 2.29
2557 6546 6.546428 TCGAGATGGAAGAGGTAATTTTCT 57.454 37.500 0.00 0.00 0.00 2.52
2558 6547 6.341316 TCGAGATGGAAGAGGTAATTTTCTG 58.659 40.000 0.00 0.00 0.00 3.02
2559 6548 6.154534 TCGAGATGGAAGAGGTAATTTTCTGA 59.845 38.462 0.00 0.00 0.00 3.27
2560 6549 6.478344 CGAGATGGAAGAGGTAATTTTCTGAG 59.522 42.308 0.00 0.00 0.00 3.35
2561 6550 6.657875 AGATGGAAGAGGTAATTTTCTGAGG 58.342 40.000 0.00 0.00 0.00 3.86
2562 6551 5.179452 TGGAAGAGGTAATTTTCTGAGGG 57.821 43.478 0.00 0.00 0.00 4.30
2563 6552 3.948473 GGAAGAGGTAATTTTCTGAGGGC 59.052 47.826 0.00 0.00 0.00 5.19
2564 6553 4.324641 GGAAGAGGTAATTTTCTGAGGGCT 60.325 45.833 0.00 0.00 0.00 5.19
2565 6554 4.495690 AGAGGTAATTTTCTGAGGGCTC 57.504 45.455 0.00 0.00 0.00 4.70
2566 6555 3.846588 AGAGGTAATTTTCTGAGGGCTCA 59.153 43.478 0.00 0.00 38.06 4.26
2575 6564 3.751767 TGAGGGCTCAGTGCAAATT 57.248 47.368 0.00 0.00 45.15 1.82
2576 6565 1.999648 TGAGGGCTCAGTGCAAATTT 58.000 45.000 0.00 0.00 45.15 1.82
2577 6566 1.614903 TGAGGGCTCAGTGCAAATTTG 59.385 47.619 14.03 14.03 45.15 2.32
2578 6567 1.615392 GAGGGCTCAGTGCAAATTTGT 59.385 47.619 19.03 0.00 45.15 2.83
2579 6568 2.036346 GAGGGCTCAGTGCAAATTTGTT 59.964 45.455 19.03 3.43 45.15 2.83
2580 6569 2.036346 AGGGCTCAGTGCAAATTTGTTC 59.964 45.455 19.03 12.13 45.15 3.18
2581 6570 2.407090 GGCTCAGTGCAAATTTGTTCC 58.593 47.619 19.03 7.72 45.15 3.62
2582 6571 2.036346 GGCTCAGTGCAAATTTGTTCCT 59.964 45.455 19.03 9.71 45.15 3.36
2583 6572 3.311966 GCTCAGTGCAAATTTGTTCCTC 58.688 45.455 19.03 3.17 42.31 3.71
2584 6573 3.243501 GCTCAGTGCAAATTTGTTCCTCA 60.244 43.478 19.03 5.76 42.31 3.86
2585 6574 4.293415 CTCAGTGCAAATTTGTTCCTCAC 58.707 43.478 19.03 16.42 0.00 3.51
2586 6575 3.044986 CAGTGCAAATTTGTTCCTCACG 58.955 45.455 19.03 10.28 0.00 4.35
2587 6576 1.786579 GTGCAAATTTGTTCCTCACGC 59.213 47.619 19.03 4.09 0.00 5.34
2588 6577 1.406898 TGCAAATTTGTTCCTCACGCA 59.593 42.857 19.03 5.11 0.00 5.24
2589 6578 2.053627 GCAAATTTGTTCCTCACGCAG 58.946 47.619 19.03 0.00 0.00 5.18
2590 6579 2.053627 CAAATTTGTTCCTCACGCAGC 58.946 47.619 10.15 0.00 0.00 5.25
2591 6580 0.238289 AATTTGTTCCTCACGCAGCG 59.762 50.000 14.82 14.82 0.00 5.18
2592 6581 1.577328 ATTTGTTCCTCACGCAGCGG 61.577 55.000 21.15 8.40 0.00 5.52
2593 6582 2.652382 TTTGTTCCTCACGCAGCGGA 62.652 55.000 21.15 12.49 0.00 5.54
2594 6583 2.125512 GTTCCTCACGCAGCGGAT 60.126 61.111 21.15 0.00 0.00 4.18
2595 6584 2.125552 TTCCTCACGCAGCGGATG 60.126 61.111 21.15 9.58 0.00 3.51
2596 6585 2.942796 TTCCTCACGCAGCGGATGT 61.943 57.895 21.15 0.00 0.00 3.06
2597 6586 2.835701 TTCCTCACGCAGCGGATGTC 62.836 60.000 21.15 0.00 0.00 3.06
2598 6587 2.125952 CTCACGCAGCGGATGTCA 60.126 61.111 21.15 0.00 0.00 3.58
2599 6588 2.432456 TCACGCAGCGGATGTCAC 60.432 61.111 21.15 0.00 0.00 3.67
2600 6589 2.738139 CACGCAGCGGATGTCACA 60.738 61.111 21.15 0.00 0.00 3.58
2601 6590 2.102438 CACGCAGCGGATGTCACAT 61.102 57.895 21.15 0.00 0.00 3.21
2602 6591 1.811266 ACGCAGCGGATGTCACATC 60.811 57.895 21.15 9.53 0.00 3.06
2603 6592 1.520120 CGCAGCGGATGTCACATCT 60.520 57.895 17.46 0.00 0.00 2.90
2604 6593 0.249031 CGCAGCGGATGTCACATCTA 60.249 55.000 17.46 0.00 0.00 1.98
2605 6594 1.212616 GCAGCGGATGTCACATCTAC 58.787 55.000 17.46 9.73 0.00 2.59
2606 6595 1.471501 GCAGCGGATGTCACATCTACA 60.472 52.381 17.46 0.00 0.00 2.74
2607 6596 2.467838 CAGCGGATGTCACATCTACAG 58.532 52.381 17.46 7.98 0.00 2.74
2608 6597 2.099756 CAGCGGATGTCACATCTACAGA 59.900 50.000 17.46 0.00 0.00 3.41
2609 6598 2.760650 AGCGGATGTCACATCTACAGAA 59.239 45.455 17.46 0.00 0.00 3.02
2610 6599 3.119291 GCGGATGTCACATCTACAGAAG 58.881 50.000 17.46 2.60 0.00 2.85
2611 6600 3.119291 CGGATGTCACATCTACAGAAGC 58.881 50.000 17.46 0.00 0.00 3.86
2612 6601 3.181482 CGGATGTCACATCTACAGAAGCT 60.181 47.826 17.46 0.00 0.00 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 9.831737 CCACACACATTTTAACATTTTTGAAAA 57.168 25.926 0.00 0.00 0.00 2.29
124 125 9.219603 TCCACACACATTTTAACATTTTTGAAA 57.780 25.926 0.00 0.00 0.00 2.69
130 131 7.772757 ACCATTTCCACACACATTTTAACATTT 59.227 29.630 0.00 0.00 0.00 2.32
131 132 7.278875 ACCATTTCCACACACATTTTAACATT 58.721 30.769 0.00 0.00 0.00 2.71
133 134 6.227298 ACCATTTCCACACACATTTTAACA 57.773 33.333 0.00 0.00 0.00 2.41
134 135 8.707839 CAATACCATTTCCACACACATTTTAAC 58.292 33.333 0.00 0.00 0.00 2.01
136 137 8.085296 GTCAATACCATTTCCACACACATTTTA 58.915 33.333 0.00 0.00 0.00 1.52
137 138 6.928492 GTCAATACCATTTCCACACACATTTT 59.072 34.615 0.00 0.00 0.00 1.82
138 139 6.454795 GTCAATACCATTTCCACACACATTT 58.545 36.000 0.00 0.00 0.00 2.32
139 140 5.335583 CGTCAATACCATTTCCACACACATT 60.336 40.000 0.00 0.00 0.00 2.71
140 141 4.155826 CGTCAATACCATTTCCACACACAT 59.844 41.667 0.00 0.00 0.00 3.21
141 142 3.500299 CGTCAATACCATTTCCACACACA 59.500 43.478 0.00 0.00 0.00 3.72
142 143 3.749088 TCGTCAATACCATTTCCACACAC 59.251 43.478 0.00 0.00 0.00 3.82
144 145 4.394920 ACATCGTCAATACCATTTCCACAC 59.605 41.667 0.00 0.00 0.00 3.82
145 146 4.584874 ACATCGTCAATACCATTTCCACA 58.415 39.130 0.00 0.00 0.00 4.17
146 147 6.861065 ATACATCGTCAATACCATTTCCAC 57.139 37.500 0.00 0.00 0.00 4.02
226 227 9.980780 CACATTGTACATTTTTCGTACATATCA 57.019 29.630 0.00 0.00 46.30 2.15
228 229 8.454894 TGCACATTGTACATTTTTCGTACATAT 58.545 29.630 0.00 0.04 46.30 1.78
229 230 7.807680 TGCACATTGTACATTTTTCGTACATA 58.192 30.769 0.00 0.00 46.30 2.29
232 233 6.033407 CCATGCACATTGTACATTTTTCGTAC 59.967 38.462 0.00 0.00 39.75 3.67
233 234 6.072452 TCCATGCACATTGTACATTTTTCGTA 60.072 34.615 0.00 0.00 0.00 3.43
234 235 4.922692 CCATGCACATTGTACATTTTTCGT 59.077 37.500 0.00 0.00 0.00 3.85
235 236 5.159925 TCCATGCACATTGTACATTTTTCG 58.840 37.500 0.00 0.00 0.00 3.46
236 237 7.418840 TTTCCATGCACATTGTACATTTTTC 57.581 32.000 0.00 0.00 0.00 2.29
237 238 7.798596 TTTTCCATGCACATTGTACATTTTT 57.201 28.000 0.00 0.00 0.00 1.94
238 239 7.798596 TTTTTCCATGCACATTGTACATTTT 57.201 28.000 0.00 0.00 0.00 1.82
325 326 9.908152 ACATTCAACATCTTTCGTATATATCGA 57.092 29.630 0.00 0.00 35.50 3.59
334 335 9.180678 GTTTCAATAACATTCAACATCTTTCGT 57.819 29.630 0.00 0.00 0.00 3.85
335 336 9.179552 TGTTTCAATAACATTCAACATCTTTCG 57.820 29.630 0.00 0.00 0.00 3.46
339 340 9.903682 CTCTTGTTTCAATAACATTCAACATCT 57.096 29.630 0.00 0.00 0.00 2.90
429 430 8.905702 CGTTTTTCTTTCATCATCTAACTTTGG 58.094 33.333 0.00 0.00 0.00 3.28
430 431 8.905702 CCGTTTTTCTTTCATCATCTAACTTTG 58.094 33.333 0.00 0.00 0.00 2.77
431 432 8.846211 TCCGTTTTTCTTTCATCATCTAACTTT 58.154 29.630 0.00 0.00 0.00 2.66
432 433 8.391075 TCCGTTTTTCTTTCATCATCTAACTT 57.609 30.769 0.00 0.00 0.00 2.66
433 434 7.979444 TCCGTTTTTCTTTCATCATCTAACT 57.021 32.000 0.00 0.00 0.00 2.24
436 437 8.615878 TTCTTCCGTTTTTCTTTCATCATCTA 57.384 30.769 0.00 0.00 0.00 1.98
437 438 7.510549 TTCTTCCGTTTTTCTTTCATCATCT 57.489 32.000 0.00 0.00 0.00 2.90
441 442 8.574196 TGATTTTCTTCCGTTTTTCTTTCATC 57.426 30.769 0.00 0.00 0.00 2.92
442 443 8.197439 ACTGATTTTCTTCCGTTTTTCTTTCAT 58.803 29.630 0.00 0.00 0.00 2.57
444 445 7.700656 TCACTGATTTTCTTCCGTTTTTCTTTC 59.299 33.333 0.00 0.00 0.00 2.62
445 446 7.543756 TCACTGATTTTCTTCCGTTTTTCTTT 58.456 30.769 0.00 0.00 0.00 2.52
446 447 7.095695 TCACTGATTTTCTTCCGTTTTTCTT 57.904 32.000 0.00 0.00 0.00 2.52
447 448 6.693315 TCACTGATTTTCTTCCGTTTTTCT 57.307 33.333 0.00 0.00 0.00 2.52
448 449 7.749539 TTTCACTGATTTTCTTCCGTTTTTC 57.250 32.000 0.00 0.00 0.00 2.29
449 450 8.440059 GTTTTTCACTGATTTTCTTCCGTTTTT 58.560 29.630 0.00 0.00 0.00 1.94
450 451 7.600752 TGTTTTTCACTGATTTTCTTCCGTTTT 59.399 29.630 0.00 0.00 0.00 2.43
452 453 6.626302 TGTTTTTCACTGATTTTCTTCCGTT 58.374 32.000 0.00 0.00 0.00 4.44
453 454 6.202516 TGTTTTTCACTGATTTTCTTCCGT 57.797 33.333 0.00 0.00 0.00 4.69
454 455 7.518731 TTTGTTTTTCACTGATTTTCTTCCG 57.481 32.000 0.00 0.00 0.00 4.30
482 483 9.733556 GATTTCTTTGGGGTTATTTTTGGTTAT 57.266 29.630 0.00 0.00 0.00 1.89
484 485 7.719193 CAGATTTCTTTGGGGTTATTTTTGGTT 59.281 33.333 0.00 0.00 0.00 3.67
485 486 7.223584 CAGATTTCTTTGGGGTTATTTTTGGT 58.776 34.615 0.00 0.00 0.00 3.67
486 487 6.654582 CCAGATTTCTTTGGGGTTATTTTTGG 59.345 38.462 0.00 0.00 0.00 3.28
487 488 7.173047 CACCAGATTTCTTTGGGGTTATTTTTG 59.827 37.037 0.00 0.00 38.82 2.44
488 489 7.071824 TCACCAGATTTCTTTGGGGTTATTTTT 59.928 33.333 0.00 0.00 39.00 1.94
489 490 6.556874 TCACCAGATTTCTTTGGGGTTATTTT 59.443 34.615 0.00 0.00 39.00 1.82
490 491 6.081356 TCACCAGATTTCTTTGGGGTTATTT 58.919 36.000 0.00 0.00 39.00 1.40
492 493 5.269554 TCACCAGATTTCTTTGGGGTTAT 57.730 39.130 0.00 0.00 39.00 1.89
493 494 4.733077 TCACCAGATTTCTTTGGGGTTA 57.267 40.909 0.00 0.00 39.00 2.85
494 495 3.611025 TCACCAGATTTCTTTGGGGTT 57.389 42.857 0.00 0.00 39.00 4.11
498 499 7.491682 TCTTTTTCTTCACCAGATTTCTTTGG 58.508 34.615 0.00 0.00 40.38 3.28
501 502 9.799106 TCTATCTTTTTCTTCACCAGATTTCTT 57.201 29.630 0.00 0.00 0.00 2.52
502 503 9.799106 TTCTATCTTTTTCTTCACCAGATTTCT 57.201 29.630 0.00 0.00 0.00 2.52
507 508 9.184523 TGTTTTTCTATCTTTTTCTTCACCAGA 57.815 29.630 0.00 0.00 0.00 3.86
508 509 9.801873 TTGTTTTTCTATCTTTTTCTTCACCAG 57.198 29.630 0.00 0.00 0.00 4.00
522 523 9.511144 TCGTTTTCCTTTCTTTGTTTTTCTATC 57.489 29.630 0.00 0.00 0.00 2.08
524 525 9.694137 TTTCGTTTTCCTTTCTTTGTTTTTCTA 57.306 25.926 0.00 0.00 0.00 2.10
525 526 8.596271 TTTCGTTTTCCTTTCTTTGTTTTTCT 57.404 26.923 0.00 0.00 0.00 2.52
526 527 9.098746 GTTTTCGTTTTCCTTTCTTTGTTTTTC 57.901 29.630 0.00 0.00 0.00 2.29
527 528 8.071368 GGTTTTCGTTTTCCTTTCTTTGTTTTT 58.929 29.630 0.00 0.00 0.00 1.94
528 529 7.226918 TGGTTTTCGTTTTCCTTTCTTTGTTTT 59.773 29.630 0.00 0.00 0.00 2.43
529 530 6.706716 TGGTTTTCGTTTTCCTTTCTTTGTTT 59.293 30.769 0.00 0.00 0.00 2.83
530 531 6.224584 TGGTTTTCGTTTTCCTTTCTTTGTT 58.775 32.000 0.00 0.00 0.00 2.83
531 532 5.785243 TGGTTTTCGTTTTCCTTTCTTTGT 58.215 33.333 0.00 0.00 0.00 2.83
532 533 6.713792 TTGGTTTTCGTTTTCCTTTCTTTG 57.286 33.333 0.00 0.00 0.00 2.77
533 534 6.370442 CCTTTGGTTTTCGTTTTCCTTTCTTT 59.630 34.615 0.00 0.00 0.00 2.52
534 535 5.872617 CCTTTGGTTTTCGTTTTCCTTTCTT 59.127 36.000 0.00 0.00 0.00 2.52
535 536 5.186215 TCCTTTGGTTTTCGTTTTCCTTTCT 59.814 36.000 0.00 0.00 0.00 2.52
536 537 5.412640 TCCTTTGGTTTTCGTTTTCCTTTC 58.587 37.500 0.00 0.00 0.00 2.62
537 538 5.408880 TCCTTTGGTTTTCGTTTTCCTTT 57.591 34.783 0.00 0.00 0.00 3.11
539 540 5.408880 TTTCCTTTGGTTTTCGTTTTCCT 57.591 34.783 0.00 0.00 0.00 3.36
540 541 6.483385 TTTTTCCTTTGGTTTTCGTTTTCC 57.517 33.333 0.00 0.00 0.00 3.13
560 561 8.666573 CAACGGTTTTAACTGGGTTTTATTTTT 58.333 29.630 6.41 0.00 39.62 1.94
565 566 4.952335 TCCAACGGTTTTAACTGGGTTTTA 59.048 37.500 6.41 0.00 39.62 1.52
566 567 3.768215 TCCAACGGTTTTAACTGGGTTTT 59.232 39.130 6.41 0.00 39.62 2.43
568 569 3.015675 TCCAACGGTTTTAACTGGGTT 57.984 42.857 6.41 0.42 39.62 4.11
569 570 2.732844 TCCAACGGTTTTAACTGGGT 57.267 45.000 6.41 0.00 39.62 4.51
570 571 4.519730 TGTATTCCAACGGTTTTAACTGGG 59.480 41.667 6.41 0.00 39.62 4.45
571 572 5.239963 ACTGTATTCCAACGGTTTTAACTGG 59.760 40.000 6.41 0.61 39.62 4.00
573 574 8.449251 TTTACTGTATTCCAACGGTTTTAACT 57.551 30.769 0.00 0.00 39.64 2.24
574 575 8.957028 GTTTTACTGTATTCCAACGGTTTTAAC 58.043 33.333 0.00 0.00 39.64 2.01
577 578 6.096564 TGGTTTTACTGTATTCCAACGGTTTT 59.903 34.615 0.00 0.00 39.64 2.43
578 579 5.593502 TGGTTTTACTGTATTCCAACGGTTT 59.406 36.000 0.00 0.00 39.64 3.27
579 580 5.131784 TGGTTTTACTGTATTCCAACGGTT 58.868 37.500 0.00 0.00 39.64 4.44
580 581 4.716794 TGGTTTTACTGTATTCCAACGGT 58.283 39.130 0.00 0.00 41.77 4.83
581 582 5.692613 TTGGTTTTACTGTATTCCAACGG 57.307 39.130 11.84 0.00 31.32 4.44
585 586 9.589111 GTTTTTCTTTGGTTTTACTGTATTCCA 57.411 29.630 0.00 0.00 0.00 3.53
591 592 8.151596 TCCTTTGTTTTTCTTTGGTTTTACTGT 58.848 29.630 0.00 0.00 0.00 3.55
592 593 8.541133 TCCTTTGTTTTTCTTTGGTTTTACTG 57.459 30.769 0.00 0.00 0.00 2.74
596 597 9.126151 TCTTTTCCTTTGTTTTTCTTTGGTTTT 57.874 25.926 0.00 0.00 0.00 2.43
597 598 8.684386 TCTTTTCCTTTGTTTTTCTTTGGTTT 57.316 26.923 0.00 0.00 0.00 3.27
598 599 7.390440 CCTCTTTTCCTTTGTTTTTCTTTGGTT 59.610 33.333 0.00 0.00 0.00 3.67
599 600 6.878923 CCTCTTTTCCTTTGTTTTTCTTTGGT 59.121 34.615 0.00 0.00 0.00 3.67
601 602 8.443160 GTTCCTCTTTTCCTTTGTTTTTCTTTG 58.557 33.333 0.00 0.00 0.00 2.77
604 605 7.178451 TCAGTTCCTCTTTTCCTTTGTTTTTCT 59.822 33.333 0.00 0.00 0.00 2.52
605 606 7.320399 TCAGTTCCTCTTTTCCTTTGTTTTTC 58.680 34.615 0.00 0.00 0.00 2.29
606 607 7.239763 TCAGTTCCTCTTTTCCTTTGTTTTT 57.760 32.000 0.00 0.00 0.00 1.94
607 608 6.850752 TCAGTTCCTCTTTTCCTTTGTTTT 57.149 33.333 0.00 0.00 0.00 2.43
608 609 6.850752 TTCAGTTCCTCTTTTCCTTTGTTT 57.149 33.333 0.00 0.00 0.00 2.83
609 610 6.850752 TTTCAGTTCCTCTTTTCCTTTGTT 57.149 33.333 0.00 0.00 0.00 2.83
610 611 6.850752 TTTTCAGTTCCTCTTTTCCTTTGT 57.149 33.333 0.00 0.00 0.00 2.83
633 634 4.320608 TTTCTCGCTTTCATGGCTTTTT 57.679 36.364 0.00 0.00 0.00 1.94
635 636 4.488879 GATTTTCTCGCTTTCATGGCTTT 58.511 39.130 0.00 0.00 0.00 3.51
636 637 3.426695 CGATTTTCTCGCTTTCATGGCTT 60.427 43.478 0.00 0.00 41.14 4.35
638 639 2.444351 CGATTTTCTCGCTTTCATGGC 58.556 47.619 0.00 0.00 41.14 4.40
649 650 9.343103 GGTATTTCCTTTTCTTTCGATTTTCTC 57.657 33.333 0.00 0.00 0.00 2.87
651 652 8.019094 TCGGTATTTCCTTTTCTTTCGATTTTC 58.981 33.333 0.00 0.00 0.00 2.29
654 655 7.303261 GTTCGGTATTTCCTTTTCTTTCGATT 58.697 34.615 0.00 0.00 0.00 3.34
656 657 5.107375 CGTTCGGTATTTCCTTTTCTTTCGA 60.107 40.000 0.00 0.00 0.00 3.71
657 658 5.077424 CGTTCGGTATTTCCTTTTCTTTCG 58.923 41.667 0.00 0.00 0.00 3.46
659 660 4.276431 TGCGTTCGGTATTTCCTTTTCTTT 59.724 37.500 0.00 0.00 0.00 2.52
661 662 3.404899 TGCGTTCGGTATTTCCTTTTCT 58.595 40.909 0.00 0.00 0.00 2.52
662 663 3.743886 CTGCGTTCGGTATTTCCTTTTC 58.256 45.455 0.00 0.00 0.00 2.29
663 664 2.095415 GCTGCGTTCGGTATTTCCTTTT 60.095 45.455 0.00 0.00 0.00 2.27
664 665 1.467342 GCTGCGTTCGGTATTTCCTTT 59.533 47.619 0.00 0.00 0.00 3.11
666 667 0.249398 AGCTGCGTTCGGTATTTCCT 59.751 50.000 0.00 0.00 0.00 3.36
667 668 0.373716 CAGCTGCGTTCGGTATTTCC 59.626 55.000 0.00 0.00 0.00 3.13
669 670 1.794222 GCAGCTGCGTTCGGTATTT 59.206 52.632 25.23 0.00 0.00 1.40
670 671 3.486263 GCAGCTGCGTTCGGTATT 58.514 55.556 25.23 0.00 0.00 1.89
741 776 0.889186 ATTGGTTGGGTGCGAGTGAC 60.889 55.000 0.00 0.00 0.00 3.67
791 827 3.311327 TGGAGATTTGGTATGGAGGGAGA 60.311 47.826 0.00 0.00 0.00 3.71
844 880 0.986527 TTCAGCAGGGAAGATGAGCA 59.013 50.000 0.00 0.00 35.10 4.26
859 896 1.775208 CGCGTGAGTTTTGCTTTTCAG 59.225 47.619 0.00 0.00 0.00 3.02
860 897 1.821336 CGCGTGAGTTTTGCTTTTCA 58.179 45.000 0.00 0.00 0.00 2.69
861 898 0.498511 GCGCGTGAGTTTTGCTTTTC 59.501 50.000 8.43 0.00 0.00 2.29
863 900 1.299089 GGCGCGTGAGTTTTGCTTT 60.299 52.632 8.43 0.00 0.00 3.51
865 902 3.660111 GGGCGCGTGAGTTTTGCT 61.660 61.111 8.43 0.00 0.00 3.91
866 903 3.595108 GAGGGCGCGTGAGTTTTGC 62.595 63.158 8.43 0.00 0.00 3.68
867 904 2.556287 GAGGGCGCGTGAGTTTTG 59.444 61.111 8.43 0.00 0.00 2.44
869 906 4.699522 GGGAGGGCGCGTGAGTTT 62.700 66.667 8.43 0.00 0.00 2.66
890 927 4.815108 AGCGGGCGGGGGATTTTC 62.815 66.667 0.00 0.00 0.00 2.29
891 928 4.815108 GAGCGGGCGGGGGATTTT 62.815 66.667 0.00 0.00 0.00 1.82
917 3274 5.602978 GGATGGTGTTAAATAGAGGAGGAGA 59.397 44.000 0.00 0.00 0.00 3.71
918 3275 5.221742 GGGATGGTGTTAAATAGAGGAGGAG 60.222 48.000 0.00 0.00 0.00 3.69
1004 3388 4.593864 GAGATGCGGCGGGAGGTC 62.594 72.222 9.78 0.00 0.00 3.85
1013 3397 1.946156 CATGTCGTCGGAGATGCGG 60.946 63.158 0.00 0.00 44.51 5.69
1214 3601 1.077429 GAAGGGGAGCTTGCGGATT 60.077 57.895 0.00 0.00 0.00 3.01
1601 5372 1.967319 TGAGAACAGGAAGCCAACAC 58.033 50.000 0.00 0.00 0.00 3.32
1631 5413 0.890683 GTTGGGAACAGGCATTCAGG 59.109 55.000 4.22 0.00 44.54 3.86
1632 5414 1.915141 AGTTGGGAACAGGCATTCAG 58.085 50.000 4.22 0.00 44.54 3.02
1757 5600 3.637998 TCTTAACTGCTCGTTCGTTCT 57.362 42.857 0.00 0.00 37.05 3.01
1789 5646 3.317993 ACACTAGCGGACAAGCAATTTTT 59.682 39.130 0.00 0.00 40.15 1.94
1850 5733 5.704978 TGCTTTCAACAGAATATGTGCACTA 59.295 36.000 19.41 8.37 43.00 2.74
1904 5799 1.616725 GCATGGTTCATGGACTTGGGA 60.617 52.381 3.62 0.00 41.64 4.37
1906 5807 1.747355 GAGCATGGTTCATGGACTTGG 59.253 52.381 3.62 0.00 41.64 3.61
1913 5814 4.511527 ACTAGTTCAGAGCATGGTTCATG 58.488 43.478 0.00 3.72 43.91 3.07
1934 5859 4.201657 ACCAACCACCAAGTAACTTGTAC 58.798 43.478 0.00 0.00 39.58 2.90
1935 5860 4.506937 ACCAACCACCAAGTAACTTGTA 57.493 40.909 0.00 0.00 39.58 2.41
1937 5862 3.067601 GGAACCAACCACCAAGTAACTTG 59.932 47.826 0.00 0.00 40.75 3.16
1938 5863 3.293337 GGAACCAACCACCAAGTAACTT 58.707 45.455 0.00 0.00 0.00 2.66
1939 5864 2.940158 GGAACCAACCACCAAGTAACT 58.060 47.619 0.00 0.00 0.00 2.24
2022 5963 0.525668 GTCGGTGATGCGACCTACTG 60.526 60.000 0.00 0.00 33.35 2.74
2023 5964 0.963856 TGTCGGTGATGCGACCTACT 60.964 55.000 0.00 0.00 33.73 2.57
2024 5965 0.108992 TTGTCGGTGATGCGACCTAC 60.109 55.000 0.00 0.00 33.29 3.18
2025 5966 0.108992 GTTGTCGGTGATGCGACCTA 60.109 55.000 0.00 0.00 34.57 3.08
2026 5967 1.374252 GTTGTCGGTGATGCGACCT 60.374 57.895 0.00 0.00 34.57 3.85
2030 5971 0.172578 TAGGAGTTGTCGGTGATGCG 59.827 55.000 0.00 0.00 0.00 4.73
2039 5980 3.998341 TGGTGCGTTATTTAGGAGTTGTC 59.002 43.478 0.00 0.00 0.00 3.18
2044 5985 2.866762 GCTCTGGTGCGTTATTTAGGAG 59.133 50.000 0.00 0.00 0.00 3.69
2077 6021 0.396435 TCTGACCAATCGTTGCCAGT 59.604 50.000 12.79 0.00 34.02 4.00
2305 6287 3.630769 TCAGCGACGAGTAATATGGAACT 59.369 43.478 0.00 0.00 0.00 3.01
2309 6291 6.150318 ACTAAATCAGCGACGAGTAATATGG 58.850 40.000 0.00 0.00 0.00 2.74
2310 6292 7.801783 TGTACTAAATCAGCGACGAGTAATATG 59.198 37.037 0.00 0.00 0.00 1.78
2311 6293 7.868775 TGTACTAAATCAGCGACGAGTAATAT 58.131 34.615 0.00 0.00 0.00 1.28
2314 6296 5.550232 TGTACTAAATCAGCGACGAGTAA 57.450 39.130 0.00 0.00 0.00 2.24
2315 6297 5.122869 AGTTGTACTAAATCAGCGACGAGTA 59.877 40.000 0.00 0.00 0.00 2.59
2317 6299 4.413087 AGTTGTACTAAATCAGCGACGAG 58.587 43.478 0.00 0.00 0.00 4.18
2318 6300 4.430137 AGTTGTACTAAATCAGCGACGA 57.570 40.909 0.00 0.00 0.00 4.20
2319 6301 5.107607 ACAAAGTTGTACTAAATCAGCGACG 60.108 40.000 0.00 0.00 40.16 5.12
2320 6302 6.224420 ACAAAGTTGTACTAAATCAGCGAC 57.776 37.500 0.00 0.00 40.16 5.19
2334 6316 5.756347 TGTCGCTGATTTAGTACAAAGTTGT 59.244 36.000 1.75 1.75 44.86 3.32
2338 6320 6.467723 ACTTGTCGCTGATTTAGTACAAAG 57.532 37.500 0.00 0.00 35.46 2.77
2343 6325 8.635328 TCCATATTACTTGTCGCTGATTTAGTA 58.365 33.333 0.00 0.00 0.00 1.82
2350 6332 4.109766 CGTTCCATATTACTTGTCGCTGA 58.890 43.478 0.00 0.00 0.00 4.26
2352 6334 3.131577 TCCGTTCCATATTACTTGTCGCT 59.868 43.478 0.00 0.00 0.00 4.93
2353 6335 3.450578 TCCGTTCCATATTACTTGTCGC 58.549 45.455 0.00 0.00 0.00 5.19
2358 6340 4.296056 ACTCCCTCCGTTCCATATTACTT 58.704 43.478 0.00 0.00 0.00 2.24
2365 6347 2.244252 AGTACTACTCCCTCCGTTCCAT 59.756 50.000 0.00 0.00 0.00 3.41
2377 6359 7.594015 TCGAAGAATTTTGACACAGTACTACTC 59.406 37.037 0.00 0.00 0.00 2.59
2417 6405 0.607489 CAGGTTCAGAGGCACCCAAG 60.607 60.000 0.00 0.00 32.92 3.61
2507 6496 3.393360 GCTGTAGCTCCCACACCT 58.607 61.111 0.00 0.00 38.21 4.00
2517 6506 3.804325 TCTCGAATAATTGCAGCTGTAGC 59.196 43.478 16.64 0.77 42.49 3.58
2518 6507 5.107182 CCATCTCGAATAATTGCAGCTGTAG 60.107 44.000 16.64 0.00 0.00 2.74
2519 6508 4.751600 CCATCTCGAATAATTGCAGCTGTA 59.248 41.667 16.64 8.31 0.00 2.74
2520 6509 3.562973 CCATCTCGAATAATTGCAGCTGT 59.437 43.478 16.64 0.00 0.00 4.40
2521 6510 3.811497 TCCATCTCGAATAATTGCAGCTG 59.189 43.478 10.11 10.11 0.00 4.24
2522 6511 4.077300 TCCATCTCGAATAATTGCAGCT 57.923 40.909 0.00 0.00 0.00 4.24
2523 6512 4.512944 TCTTCCATCTCGAATAATTGCAGC 59.487 41.667 0.00 0.00 0.00 5.25
2524 6513 5.178996 CCTCTTCCATCTCGAATAATTGCAG 59.821 44.000 0.00 0.00 0.00 4.41
2525 6514 5.059161 CCTCTTCCATCTCGAATAATTGCA 58.941 41.667 0.00 0.00 0.00 4.08
2526 6515 5.059833 ACCTCTTCCATCTCGAATAATTGC 58.940 41.667 0.00 0.00 0.00 3.56
2527 6516 8.839310 ATTACCTCTTCCATCTCGAATAATTG 57.161 34.615 0.00 0.00 0.00 2.32
2528 6517 9.853177 AAATTACCTCTTCCATCTCGAATAATT 57.147 29.630 0.00 0.00 0.00 1.40
2529 6518 9.853177 AAAATTACCTCTTCCATCTCGAATAAT 57.147 29.630 0.00 0.00 0.00 1.28
2530 6519 9.326413 GAAAATTACCTCTTCCATCTCGAATAA 57.674 33.333 0.00 0.00 0.00 1.40
2531 6520 8.705594 AGAAAATTACCTCTTCCATCTCGAATA 58.294 33.333 0.00 0.00 0.00 1.75
2532 6521 7.497249 CAGAAAATTACCTCTTCCATCTCGAAT 59.503 37.037 0.00 0.00 0.00 3.34
2533 6522 6.818644 CAGAAAATTACCTCTTCCATCTCGAA 59.181 38.462 0.00 0.00 0.00 3.71
2534 6523 6.154534 TCAGAAAATTACCTCTTCCATCTCGA 59.845 38.462 0.00 0.00 0.00 4.04
2535 6524 6.341316 TCAGAAAATTACCTCTTCCATCTCG 58.659 40.000 0.00 0.00 0.00 4.04
2536 6525 6.765512 CCTCAGAAAATTACCTCTTCCATCTC 59.234 42.308 0.00 0.00 0.00 2.75
2537 6526 6.353429 CCCTCAGAAAATTACCTCTTCCATCT 60.353 42.308 0.00 0.00 0.00 2.90
2538 6527 5.825151 CCCTCAGAAAATTACCTCTTCCATC 59.175 44.000 0.00 0.00 0.00 3.51
2539 6528 5.760131 CCCTCAGAAAATTACCTCTTCCAT 58.240 41.667 0.00 0.00 0.00 3.41
2540 6529 4.567747 GCCCTCAGAAAATTACCTCTTCCA 60.568 45.833 0.00 0.00 0.00 3.53
2541 6530 3.948473 GCCCTCAGAAAATTACCTCTTCC 59.052 47.826 0.00 0.00 0.00 3.46
2542 6531 4.849518 AGCCCTCAGAAAATTACCTCTTC 58.150 43.478 0.00 0.00 0.00 2.87
2543 6532 4.289672 TGAGCCCTCAGAAAATTACCTCTT 59.710 41.667 0.00 0.00 34.14 2.85
2544 6533 3.846588 TGAGCCCTCAGAAAATTACCTCT 59.153 43.478 0.00 0.00 34.14 3.69
2545 6534 4.222124 TGAGCCCTCAGAAAATTACCTC 57.778 45.455 0.00 0.00 34.14 3.85
2557 6546 1.614903 CAAATTTGCACTGAGCCCTCA 59.385 47.619 5.01 0.00 44.83 3.86
2558 6547 1.615392 ACAAATTTGCACTGAGCCCTC 59.385 47.619 18.12 0.00 44.83 4.30
2559 6548 1.708341 ACAAATTTGCACTGAGCCCT 58.292 45.000 18.12 0.00 44.83 5.19
2560 6549 2.407090 GAACAAATTTGCACTGAGCCC 58.593 47.619 18.12 0.00 44.83 5.19
2561 6550 2.036346 AGGAACAAATTTGCACTGAGCC 59.964 45.455 18.12 8.77 44.83 4.70
2562 6551 3.243501 TGAGGAACAAATTTGCACTGAGC 60.244 43.478 18.12 3.10 45.96 4.26
2563 6552 4.293415 GTGAGGAACAAATTTGCACTGAG 58.707 43.478 18.12 0.00 0.00 3.35
2564 6553 3.243035 CGTGAGGAACAAATTTGCACTGA 60.243 43.478 18.12 5.38 0.00 3.41
2565 6554 3.044986 CGTGAGGAACAAATTTGCACTG 58.955 45.455 18.12 9.67 0.00 3.66
2566 6555 2.543653 GCGTGAGGAACAAATTTGCACT 60.544 45.455 18.12 12.98 0.00 4.40
2567 6556 1.786579 GCGTGAGGAACAAATTTGCAC 59.213 47.619 18.12 15.09 0.00 4.57
2568 6557 1.406898 TGCGTGAGGAACAAATTTGCA 59.593 42.857 18.12 4.79 0.00 4.08
2569 6558 2.053627 CTGCGTGAGGAACAAATTTGC 58.946 47.619 18.12 2.73 0.00 3.68
2570 6559 2.053627 GCTGCGTGAGGAACAAATTTG 58.946 47.619 16.67 16.67 0.00 2.32
2571 6560 1.334960 CGCTGCGTGAGGAACAAATTT 60.335 47.619 14.93 0.00 0.00 1.82
2572 6561 0.238289 CGCTGCGTGAGGAACAAATT 59.762 50.000 14.93 0.00 0.00 1.82
2573 6562 1.577328 CCGCTGCGTGAGGAACAAAT 61.577 55.000 21.59 0.00 37.90 2.32
2574 6563 2.250939 CCGCTGCGTGAGGAACAAA 61.251 57.895 21.59 0.00 37.90 2.83
2575 6564 2.664851 CCGCTGCGTGAGGAACAA 60.665 61.111 21.59 0.00 37.90 2.83
2576 6565 3.611674 TCCGCTGCGTGAGGAACA 61.612 61.111 21.59 0.00 41.70 3.18
2580 6569 2.887568 GACATCCGCTGCGTGAGG 60.888 66.667 21.59 19.77 36.94 3.86
2581 6570 2.125952 TGACATCCGCTGCGTGAG 60.126 61.111 21.59 11.85 0.00 3.51
2582 6571 2.432456 GTGACATCCGCTGCGTGA 60.432 61.111 21.59 17.28 0.00 4.35
2583 6572 2.028766 GATGTGACATCCGCTGCGTG 62.029 60.000 21.59 15.69 0.00 5.34
2584 6573 1.811266 GATGTGACATCCGCTGCGT 60.811 57.895 21.59 1.22 0.00 5.24
2585 6574 0.249031 TAGATGTGACATCCGCTGCG 60.249 55.000 21.05 16.34 0.00 5.18
2586 6575 1.212616 GTAGATGTGACATCCGCTGC 58.787 55.000 21.05 3.97 0.00 5.25
2587 6576 2.099756 TCTGTAGATGTGACATCCGCTG 59.900 50.000 21.05 16.58 0.00 5.18
2588 6577 2.379005 TCTGTAGATGTGACATCCGCT 58.621 47.619 21.05 6.50 0.00 5.52
2589 6578 2.871182 TCTGTAGATGTGACATCCGC 57.129 50.000 21.05 14.47 0.00 5.54
2590 6579 3.119291 GCTTCTGTAGATGTGACATCCG 58.881 50.000 21.05 8.38 0.00 4.18
2591 6580 4.399004 AGCTTCTGTAGATGTGACATCC 57.601 45.455 21.05 8.27 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.