Multiple sequence alignment - TraesCS1B01G375900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G375900 chr1B 100.000 2705 0 0 1 2705 606838862 606841566 0.000000e+00 4996.0
1 TraesCS1B01G375900 chr1B 98.113 689 12 1 777 1464 607429794 607429106 0.000000e+00 1199.0
2 TraesCS1B01G375900 chr1B 81.746 1386 137 61 774 2101 611131188 611132515 0.000000e+00 1051.0
3 TraesCS1B01G375900 chr1B 90.818 697 36 15 774 1452 610965300 610965986 0.000000e+00 907.0
4 TraesCS1B01G375900 chr1B 85.667 900 67 30 778 1643 608463185 608462314 0.000000e+00 891.0
5 TraesCS1B01G375900 chr1B 91.556 604 39 4 1 603 96464412 96463820 0.000000e+00 822.0
6 TraesCS1B01G375900 chr1B 91.419 606 40 4 1 603 564894843 564894247 0.000000e+00 821.0
7 TraesCS1B01G375900 chr1B 83.853 706 64 21 1537 2206 610966018 610966709 6.360000e-176 627.0
8 TraesCS1B01G375900 chr1B 97.633 169 2 2 2292 2459 28563561 28563394 3.410000e-74 289.0
9 TraesCS1B01G375900 chr1B 84.076 314 22 13 1936 2235 608462059 608461760 7.380000e-71 278.0
10 TraesCS1B01G375900 chr1B 86.522 230 15 8 1794 2021 494552677 494552462 3.480000e-59 239.0
11 TraesCS1B01G375900 chr1B 84.298 121 14 3 2491 2611 611134204 611134319 2.200000e-21 113.0
12 TraesCS1B01G375900 chr1B 100.000 28 0 0 745 772 610965201 610965228 5.000000e-03 52.8
13 TraesCS1B01G375900 chr1A 88.896 1522 100 31 778 2255 541381076 541382572 0.000000e+00 1810.0
14 TraesCS1B01G375900 chr1A 91.976 835 40 13 652 1464 541318928 541319757 0.000000e+00 1146.0
15 TraesCS1B01G375900 chr1A 81.983 1321 128 51 775 2040 542358195 542359460 0.000000e+00 1020.0
16 TraesCS1B01G375900 chr1A 90.363 716 38 16 778 1464 541463642 541462929 0.000000e+00 911.0
17 TraesCS1B01G375900 chr1A 85.520 884 67 27 804 1637 542170104 542170976 0.000000e+00 867.0
18 TraesCS1B01G375900 chr1A 94.094 254 10 3 2455 2705 541382588 541382839 5.470000e-102 381.0
19 TraesCS1B01G375900 chr1A 91.011 178 14 1 2060 2235 531920265 531920442 3.480000e-59 239.0
20 TraesCS1B01G375900 chr1D 87.424 1646 103 48 642 2222 445317148 445318754 0.000000e+00 1797.0
21 TraesCS1B01G375900 chr1D 85.548 1114 97 32 774 1835 446558187 446559288 0.000000e+00 1107.0
22 TraesCS1B01G375900 chr1D 88.307 898 61 15 778 1643 445387273 445386388 0.000000e+00 1037.0
23 TraesCS1B01G375900 chr1D 90.066 604 47 5 2 603 352188346 352188938 0.000000e+00 771.0
24 TraesCS1B01G375900 chr1D 95.669 254 7 2 2455 2705 445318889 445319141 3.240000e-109 405.0
25 TraesCS1B01G375900 chr1D 89.259 270 17 4 338 605 485207075 485207334 7.220000e-86 327.0
26 TraesCS1B01G375900 chr1D 82.865 356 39 13 1891 2235 446559295 446559639 1.570000e-77 300.0
27 TraesCS1B01G375900 chr1D 90.850 153 13 1 777 929 355824985 355825136 1.270000e-48 204.0
28 TraesCS1B01G375900 chr1D 87.500 88 2 6 686 772 446558035 446558114 2.870000e-15 93.5
29 TraesCS1B01G375900 chr1D 94.231 52 1 2 2243 2294 445318841 445318890 8.030000e-11 78.7
30 TraesCS1B01G375900 chr3B 93.058 605 30 4 1 603 354018699 354018105 0.000000e+00 874.0
31 TraesCS1B01G375900 chr3B 91.626 609 40 5 1 607 411843236 411843835 0.000000e+00 832.0
32 TraesCS1B01G375900 chr3B 90.969 609 43 4 1 607 129515888 129515290 0.000000e+00 809.0
33 TraesCS1B01G375900 chr3B 88.799 616 48 6 1 606 758843099 758842495 0.000000e+00 736.0
34 TraesCS1B01G375900 chr5B 91.570 605 31 5 1 603 272172809 272173395 0.000000e+00 817.0
35 TraesCS1B01G375900 chr2B 91.356 590 39 5 1 588 728224432 728223853 0.000000e+00 797.0
36 TraesCS1B01G375900 chr2B 89.421 605 41 9 1 603 142950012 142949429 0.000000e+00 741.0
37 TraesCS1B01G375900 chr2B 97.059 170 4 1 2291 2459 736244881 736245050 4.410000e-73 285.0
38 TraesCS1B01G375900 chr2B 91.011 178 14 1 2060 2235 710353738 710353915 3.480000e-59 239.0
39 TraesCS1B01G375900 chr2B 86.087 230 15 6 1794 2021 710353524 710353738 5.820000e-57 231.0
40 TraesCS1B01G375900 chr3D 90.499 621 32 17 857 1458 114883300 114882688 0.000000e+00 795.0
41 TraesCS1B01G375900 chr3D 94.972 179 7 2 2279 2456 12635841 12636018 2.050000e-71 279.0
42 TraesCS1B01G375900 chr4A 89.482 618 43 7 1 607 695560922 695560316 0.000000e+00 761.0
43 TraesCS1B01G375900 chr4B 89.159 618 44 7 1 606 603028105 603028711 0.000000e+00 749.0
44 TraesCS1B01G375900 chr4B 93.583 187 8 4 2292 2475 565737177 565736992 2.650000e-70 276.0
45 TraesCS1B01G375900 chr4B 93.583 187 7 4 2293 2476 71600788 71600604 9.540000e-70 274.0
46 TraesCS1B01G375900 chr4B 87.391 230 13 8 1794 2021 317668608 317668823 1.610000e-62 250.0
47 TraesCS1B01G375900 chr6B 88.655 617 49 7 1 606 519816854 519816248 0.000000e+00 732.0
48 TraesCS1B01G375900 chr6B 92.023 514 29 6 1 512 638927589 638927086 0.000000e+00 712.0
49 TraesCS1B01G375900 chr6B 96.512 172 6 0 2285 2456 423195880 423196051 4.410000e-73 285.0
50 TraesCS1B01G375900 chr6D 88.278 546 42 10 69 603 461378121 461377587 3.800000e-178 634.0
51 TraesCS1B01G375900 chr6D 93.617 188 11 1 2269 2456 302056999 302057185 2.050000e-71 279.0
52 TraesCS1B01G375900 chr7D 85.691 608 48 22 1418 2021 16676085 16676657 2.980000e-169 604.0
53 TraesCS1B01G375900 chr7D 91.011 178 14 1 2060 2235 16676657 16676834 3.480000e-59 239.0
54 TraesCS1B01G375900 chr3A 83.660 612 63 25 1418 2021 722492543 722491961 2.370000e-150 542.0
55 TraesCS1B01G375900 chr3A 91.011 178 13 2 2060 2235 722491961 722491785 1.250000e-58 237.0
56 TraesCS1B01G375900 chr3A 83.182 220 18 7 1889 2089 8918003 8918222 1.650000e-42 183.0
57 TraesCS1B01G375900 chr7B 83.168 606 71 22 1418 2021 425856988 425856412 2.390000e-145 525.0
58 TraesCS1B01G375900 chr7B 86.957 230 11 11 1794 2021 691516019 691515807 9.680000e-60 241.0
59 TraesCS1B01G375900 chr7B 90.449 178 15 2 2060 2235 691515807 691515630 1.620000e-57 233.0
60 TraesCS1B01G375900 chr4D 96.045 177 5 2 2288 2463 93338211 93338036 1.230000e-73 287.0
61 TraesCS1B01G375900 chr2A 95.000 180 7 2 2279 2456 124381835 124382014 5.700000e-72 281.0
62 TraesCS1B01G375900 chr2A 81.191 319 29 13 1803 2092 484064620 484064936 7.530000e-56 228.0
63 TraesCS1B01G375900 chr6A 87.391 230 13 6 1794 2021 595963761 595963976 1.610000e-62 250.0
64 TraesCS1B01G375900 chr5A 82.188 320 23 17 1803 2092 131654357 131654672 7.480000e-61 244.0
65 TraesCS1B01G375900 chr5A 94.304 158 8 1 450 606 617202079 617201922 9.680000e-60 241.0
66 TraesCS1B01G375900 chr7A 86.087 230 16 9 1794 2021 714365217 714365002 1.620000e-57 233.0
67 TraesCS1B01G375900 chr7A 84.783 230 19 8 1794 2021 94865399 94865184 1.630000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G375900 chr1B 606838862 606841566 2704 False 4996.000000 4996 100.000000 1 2705 1 chr1B.!!$F1 2704
1 TraesCS1B01G375900 chr1B 607429106 607429794 688 True 1199.000000 1199 98.113000 777 1464 1 chr1B.!!$R5 687
2 TraesCS1B01G375900 chr1B 96463820 96464412 592 True 822.000000 822 91.556000 1 603 1 chr1B.!!$R2 602
3 TraesCS1B01G375900 chr1B 564894247 564894843 596 True 821.000000 821 91.419000 1 603 1 chr1B.!!$R4 602
4 TraesCS1B01G375900 chr1B 608461760 608463185 1425 True 584.500000 891 84.871500 778 2235 2 chr1B.!!$R6 1457
5 TraesCS1B01G375900 chr1B 611131188 611134319 3131 False 582.000000 1051 83.022000 774 2611 2 chr1B.!!$F3 1837
6 TraesCS1B01G375900 chr1B 610965201 610966709 1508 False 528.933333 907 91.557000 745 2206 3 chr1B.!!$F2 1461
7 TraesCS1B01G375900 chr1A 541318928 541319757 829 False 1146.000000 1146 91.976000 652 1464 1 chr1A.!!$F2 812
8 TraesCS1B01G375900 chr1A 541381076 541382839 1763 False 1095.500000 1810 91.495000 778 2705 2 chr1A.!!$F5 1927
9 TraesCS1B01G375900 chr1A 542358195 542359460 1265 False 1020.000000 1020 81.983000 775 2040 1 chr1A.!!$F4 1265
10 TraesCS1B01G375900 chr1A 541462929 541463642 713 True 911.000000 911 90.363000 778 1464 1 chr1A.!!$R1 686
11 TraesCS1B01G375900 chr1A 542170104 542170976 872 False 867.000000 867 85.520000 804 1637 1 chr1A.!!$F3 833
12 TraesCS1B01G375900 chr1D 445386388 445387273 885 True 1037.000000 1037 88.307000 778 1643 1 chr1D.!!$R1 865
13 TraesCS1B01G375900 chr1D 352188346 352188938 592 False 771.000000 771 90.066000 2 603 1 chr1D.!!$F1 601
14 TraesCS1B01G375900 chr1D 445317148 445319141 1993 False 760.233333 1797 92.441333 642 2705 3 chr1D.!!$F4 2063
15 TraesCS1B01G375900 chr1D 446558035 446559639 1604 False 500.166667 1107 85.304333 686 2235 3 chr1D.!!$F5 1549
16 TraesCS1B01G375900 chr3B 354018105 354018699 594 True 874.000000 874 93.058000 1 603 1 chr3B.!!$R2 602
17 TraesCS1B01G375900 chr3B 411843236 411843835 599 False 832.000000 832 91.626000 1 607 1 chr3B.!!$F1 606
18 TraesCS1B01G375900 chr3B 129515290 129515888 598 True 809.000000 809 90.969000 1 607 1 chr3B.!!$R1 606
19 TraesCS1B01G375900 chr3B 758842495 758843099 604 True 736.000000 736 88.799000 1 606 1 chr3B.!!$R3 605
20 TraesCS1B01G375900 chr5B 272172809 272173395 586 False 817.000000 817 91.570000 1 603 1 chr5B.!!$F1 602
21 TraesCS1B01G375900 chr2B 728223853 728224432 579 True 797.000000 797 91.356000 1 588 1 chr2B.!!$R2 587
22 TraesCS1B01G375900 chr2B 142949429 142950012 583 True 741.000000 741 89.421000 1 603 1 chr2B.!!$R1 602
23 TraesCS1B01G375900 chr3D 114882688 114883300 612 True 795.000000 795 90.499000 857 1458 1 chr3D.!!$R1 601
24 TraesCS1B01G375900 chr4A 695560316 695560922 606 True 761.000000 761 89.482000 1 607 1 chr4A.!!$R1 606
25 TraesCS1B01G375900 chr4B 603028105 603028711 606 False 749.000000 749 89.159000 1 606 1 chr4B.!!$F2 605
26 TraesCS1B01G375900 chr6B 519816248 519816854 606 True 732.000000 732 88.655000 1 606 1 chr6B.!!$R1 605
27 TraesCS1B01G375900 chr6B 638927086 638927589 503 True 712.000000 712 92.023000 1 512 1 chr6B.!!$R2 511
28 TraesCS1B01G375900 chr6D 461377587 461378121 534 True 634.000000 634 88.278000 69 603 1 chr6D.!!$R1 534
29 TraesCS1B01G375900 chr7D 16676085 16676834 749 False 421.500000 604 88.351000 1418 2235 2 chr7D.!!$F1 817
30 TraesCS1B01G375900 chr3A 722491785 722492543 758 True 389.500000 542 87.335500 1418 2235 2 chr3A.!!$R1 817
31 TraesCS1B01G375900 chr7B 425856412 425856988 576 True 525.000000 525 83.168000 1418 2021 1 chr7B.!!$R1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.17904 GGTCCGTGTTCCAGTTCCAA 60.179 55.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 2230 1.800805 ACAGGTGAGAGTTGATTGCG 58.199 50.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 0.179040 GGTCCGTGTTCCAGTTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
129 130 5.993055 TGATGTTTTCTCTGCTCCATATGA 58.007 37.500 3.65 0.00 0.00 2.15
182 184 2.432628 CAAGCGACGGAGGTGGAC 60.433 66.667 0.00 0.00 0.00 4.02
220 231 5.044919 TGAACTTCAATATGGACTCCATGGT 60.045 40.000 19.49 6.42 44.84 3.55
303 324 5.278266 CCCTCTTTTGCGTAATGAACTTTGA 60.278 40.000 0.00 0.00 0.00 2.69
314 335 8.431593 GCGTAATGAACTTTGATTTTATTTGCA 58.568 29.630 0.00 0.00 0.00 4.08
354 376 4.621034 CGTTTGAAGTTGAACTTGTTTGCT 59.379 37.500 16.25 0.00 38.80 3.91
430 453 4.742201 GCTGAGCAGAACCCGCGA 62.742 66.667 8.23 0.00 0.00 5.87
607 634 4.081917 GGTCTGCTAGAGTTGCTCTTAGTT 60.082 45.833 3.87 0.00 41.50 2.24
608 635 5.474825 GTCTGCTAGAGTTGCTCTTAGTTT 58.525 41.667 3.87 0.00 41.50 2.66
609 636 5.575218 GTCTGCTAGAGTTGCTCTTAGTTTC 59.425 44.000 3.87 0.00 41.50 2.78
610 637 4.822026 TGCTAGAGTTGCTCTTAGTTTCC 58.178 43.478 3.87 0.00 41.50 3.13
611 638 4.185394 GCTAGAGTTGCTCTTAGTTTCCC 58.815 47.826 3.87 0.00 41.50 3.97
612 639 3.320673 AGAGTTGCTCTTAGTTTCCCG 57.679 47.619 0.00 0.00 37.60 5.14
613 640 1.732809 GAGTTGCTCTTAGTTTCCCGC 59.267 52.381 0.00 0.00 0.00 6.13
614 641 1.071699 AGTTGCTCTTAGTTTCCCGCA 59.928 47.619 0.00 0.00 0.00 5.69
615 642 1.877443 GTTGCTCTTAGTTTCCCGCAA 59.123 47.619 0.00 0.00 35.30 4.85
616 643 2.264005 TGCTCTTAGTTTCCCGCAAA 57.736 45.000 0.00 0.00 0.00 3.68
617 644 2.577700 TGCTCTTAGTTTCCCGCAAAA 58.422 42.857 0.00 0.00 0.00 2.44
618 645 2.952978 TGCTCTTAGTTTCCCGCAAAAA 59.047 40.909 0.00 0.00 0.00 1.94
701 732 1.153958 GATGTTGGCGGCAAAGAGC 60.154 57.895 27.23 14.84 44.65 4.09
715 746 3.562505 CAAAGAGCAGAGCAAACATGAC 58.437 45.455 0.00 0.00 0.00 3.06
772 804 2.209315 GCCAACAGCCCAACACCAT 61.209 57.895 0.00 0.00 34.35 3.55
794 897 2.502492 CCTCCACGATCCGCCTCAT 61.502 63.158 0.00 0.00 0.00 2.90
1020 1213 2.059756 TCCCCCAAATCTCCTCAACT 57.940 50.000 0.00 0.00 0.00 3.16
1487 1712 1.338769 GCCGTGAGTGTTTAGGTCCAT 60.339 52.381 0.00 0.00 0.00 3.41
1505 1730 2.019984 CATCTTAGCCTTTGTCCAGCC 58.980 52.381 0.00 0.00 0.00 4.85
1543 1772 3.496884 TGCTAGTGTTTGTTCGTTCCATC 59.503 43.478 0.00 0.00 0.00 3.51
1603 1833 5.409520 TGCTGTCATCAGTAACTGAAATGAC 59.590 40.000 15.42 15.42 44.29 3.06
1651 1900 1.662044 CCTTTTGGTGTGAGCCTGC 59.338 57.895 0.00 0.00 34.07 4.85
1736 1990 7.550196 CCGGTTTTAGCTACTTTGTCCTAAATA 59.450 37.037 0.00 0.00 31.94 1.40
1737 1991 8.938906 CGGTTTTAGCTACTTTGTCCTAAATAA 58.061 33.333 0.00 0.00 31.94 1.40
1742 1996 7.379098 AGCTACTTTGTCCTAAATAAGTTGC 57.621 36.000 10.69 10.69 44.19 4.17
1743 1997 7.168905 AGCTACTTTGTCCTAAATAAGTTGCT 58.831 34.615 14.00 14.00 46.81 3.91
1745 1999 7.963465 GCTACTTTGTCCTAAATAAGTTGCTTC 59.037 37.037 0.00 0.00 42.20 3.86
1751 2005 7.455058 TGTCCTAAATAAGTTGCTTCCAAGTA 58.545 34.615 0.00 0.00 33.56 2.24
1907 2207 5.633601 GCCTTTTGCTGTTTTATCCTGTAAC 59.366 40.000 0.00 0.00 36.87 2.50
1930 2230 1.815003 CTTTTGATCCCTGTGACTGCC 59.185 52.381 0.00 0.00 0.00 4.85
2027 2337 9.021863 GCTCATACTGTACATACTGTCTTTAAC 57.978 37.037 0.00 0.00 38.88 2.01
2194 3423 2.490328 AAGGTGAACACATGTTTGCG 57.510 45.000 0.00 0.00 38.56 4.85
2248 3602 6.518032 GCTGAAATGATACATCTCCTGCTCTA 60.518 42.308 0.00 0.00 0.00 2.43
2250 3604 7.212976 TGAAATGATACATCTCCTGCTCTAAC 58.787 38.462 0.00 0.00 0.00 2.34
2265 3685 6.257411 CCTGCTCTAACACATGTCTTAAGATG 59.743 42.308 8.75 6.49 32.53 2.90
2292 4067 7.701539 TTTACACATAATTCTGTTGGCATCT 57.298 32.000 0.00 0.00 0.00 2.90
2293 4068 8.800370 TTTACACATAATTCTGTTGGCATCTA 57.200 30.769 0.00 0.00 0.00 1.98
2294 4069 6.683974 ACACATAATTCTGTTGGCATCTAC 57.316 37.500 0.00 0.00 0.00 2.59
2295 4070 6.418101 ACACATAATTCTGTTGGCATCTACT 58.582 36.000 0.00 0.00 0.00 2.57
2296 4071 6.540189 ACACATAATTCTGTTGGCATCTACTC 59.460 38.462 0.00 0.00 0.00 2.59
2297 4072 6.017605 CACATAATTCTGTTGGCATCTACTCC 60.018 42.308 0.00 0.00 0.00 3.85
2298 4073 3.567478 ATTCTGTTGGCATCTACTCCC 57.433 47.619 0.00 0.00 0.00 4.30
2299 4074 2.254152 TCTGTTGGCATCTACTCCCT 57.746 50.000 0.00 0.00 0.00 4.20
2300 4075 2.111384 TCTGTTGGCATCTACTCCCTC 58.889 52.381 0.00 0.00 0.00 4.30
2301 4076 2.114616 CTGTTGGCATCTACTCCCTCT 58.885 52.381 0.00 0.00 0.00 3.69
2302 4077 1.833630 TGTTGGCATCTACTCCCTCTG 59.166 52.381 0.00 0.00 0.00 3.35
2303 4078 1.834263 GTTGGCATCTACTCCCTCTGT 59.166 52.381 0.00 0.00 0.00 3.41
2304 4079 2.237392 GTTGGCATCTACTCCCTCTGTT 59.763 50.000 0.00 0.00 0.00 3.16
2305 4080 2.111384 TGGCATCTACTCCCTCTGTTC 58.889 52.381 0.00 0.00 0.00 3.18
2306 4081 1.414550 GGCATCTACTCCCTCTGTTCC 59.585 57.143 0.00 0.00 0.00 3.62
2307 4082 2.393646 GCATCTACTCCCTCTGTTCCT 58.606 52.381 0.00 0.00 0.00 3.36
2308 4083 3.567397 GCATCTACTCCCTCTGTTCCTA 58.433 50.000 0.00 0.00 0.00 2.94
2309 4084 3.961408 GCATCTACTCCCTCTGTTCCTAA 59.039 47.826 0.00 0.00 0.00 2.69
2310 4085 4.406003 GCATCTACTCCCTCTGTTCCTAAA 59.594 45.833 0.00 0.00 0.00 1.85
2311 4086 5.071115 GCATCTACTCCCTCTGTTCCTAAAT 59.929 44.000 0.00 0.00 0.00 1.40
2312 4087 6.267928 GCATCTACTCCCTCTGTTCCTAAATA 59.732 42.308 0.00 0.00 0.00 1.40
2313 4088 7.038658 GCATCTACTCCCTCTGTTCCTAAATAT 60.039 40.741 0.00 0.00 0.00 1.28
2314 4089 8.875168 CATCTACTCCCTCTGTTCCTAAATATT 58.125 37.037 0.00 0.00 0.00 1.28
2315 4090 8.855804 TCTACTCCCTCTGTTCCTAAATATTT 57.144 34.615 5.89 5.89 0.00 1.40
2316 4091 8.705594 TCTACTCCCTCTGTTCCTAAATATTTG 58.294 37.037 11.05 1.40 0.00 2.32
2317 4092 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
2318 4093 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
2319 4094 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
2320 4095 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
2321 4096 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
2322 4097 9.025041 CCCTCTGTTCCTAAATATTTGTCTTTT 57.975 33.333 11.05 0.00 0.00 2.27
2339 4114 9.965824 TTTGTCTTTTTAGAGATTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
2340 4115 8.924511 TGTCTTTTTAGAGATTCAAATGGACT 57.075 30.769 0.00 0.00 0.00 3.85
2343 4118 9.449719 TCTTTTTAGAGATTCAAATGGACTACC 57.550 33.333 0.00 0.00 0.00 3.18
2359 4134 7.770366 TGGACTACCACATACGAATGTATAT 57.230 36.000 0.00 0.00 44.70 0.86
2360 4135 8.866970 TGGACTACCACATACGAATGTATATA 57.133 34.615 0.00 0.00 44.70 0.86
2361 4136 8.953313 TGGACTACCACATACGAATGTATATAG 58.047 37.037 0.00 0.00 44.70 1.31
2362 4137 9.170734 GGACTACCACATACGAATGTATATAGA 57.829 37.037 0.00 0.00 44.70 1.98
2363 4138 9.985318 GACTACCACATACGAATGTATATAGAC 57.015 37.037 0.00 0.00 44.70 2.59
2364 4139 9.511272 ACTACCACATACGAATGTATATAGACA 57.489 33.333 2.07 2.07 44.70 3.41
2396 4171 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2397 4172 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2398 4173 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2399 4174 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2400 4175 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2401 4176 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2402 4177 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2403 4178 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2404 4179 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2405 4180 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2406 4181 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2407 4182 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
2408 4183 6.533723 CACTCATTTTGCTCCGTATGTAGTTA 59.466 38.462 0.00 0.00 0.00 2.24
2409 4184 6.534079 ACTCATTTTGCTCCGTATGTAGTTAC 59.466 38.462 0.00 0.00 0.00 2.50
2410 4185 6.636705 TCATTTTGCTCCGTATGTAGTTACT 58.363 36.000 0.00 0.00 0.00 2.24
2411 4186 7.101054 TCATTTTGCTCCGTATGTAGTTACTT 58.899 34.615 0.00 0.00 0.00 2.24
2412 4187 6.715344 TTTTGCTCCGTATGTAGTTACTTG 57.285 37.500 0.00 0.00 0.00 3.16
2413 4188 5.395682 TTGCTCCGTATGTAGTTACTTGT 57.604 39.130 0.00 0.00 0.00 3.16
2414 4189 5.395682 TGCTCCGTATGTAGTTACTTGTT 57.604 39.130 0.00 0.00 0.00 2.83
2415 4190 5.165676 TGCTCCGTATGTAGTTACTTGTTG 58.834 41.667 0.00 0.00 0.00 3.33
2416 4191 5.047872 TGCTCCGTATGTAGTTACTTGTTGA 60.048 40.000 0.00 0.00 0.00 3.18
2417 4192 5.865552 GCTCCGTATGTAGTTACTTGTTGAA 59.134 40.000 0.00 0.00 0.00 2.69
2418 4193 6.366877 GCTCCGTATGTAGTTACTTGTTGAAA 59.633 38.462 0.00 0.00 0.00 2.69
2419 4194 7.064253 GCTCCGTATGTAGTTACTTGTTGAAAT 59.936 37.037 0.00 0.00 0.00 2.17
2420 4195 8.470040 TCCGTATGTAGTTACTTGTTGAAATC 57.530 34.615 0.00 0.00 0.00 2.17
2421 4196 8.308931 TCCGTATGTAGTTACTTGTTGAAATCT 58.691 33.333 0.00 0.00 0.00 2.40
2422 4197 8.592998 CCGTATGTAGTTACTTGTTGAAATCTC 58.407 37.037 0.00 0.00 0.00 2.75
2423 4198 9.355215 CGTATGTAGTTACTTGTTGAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
2433 4208 8.964476 ACTTGTTGAAATCTCTAGAAAGACAA 57.036 30.769 0.00 0.00 0.00 3.18
2434 4209 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2447 4222 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2448 4223 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2449 4224 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2450 4225 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2451 4226 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2452 4227 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2453 4228 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2528 4330 8.365647 AGTACTTTAGGGATATCAAATGGTACG 58.634 37.037 4.83 0.00 32.67 3.67
2681 4483 7.977904 TCAACTCACATGCTCTATTTGTATTG 58.022 34.615 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 6.598503 TCATATGGAGCAGAGAAAACATCAT 58.401 36.000 2.13 0.00 0.00 2.45
129 130 2.363038 CCGAAATCATCCACATTGCCAT 59.637 45.455 0.00 0.00 0.00 4.40
182 184 2.158959 GTTCATCGACGCCACCGAG 61.159 63.158 0.00 0.00 39.55 4.63
192 194 5.128663 TGGAGTCCATATTGAAGTTCATCGA 59.871 40.000 8.12 0.00 0.00 3.59
220 231 1.511305 GGTCGATCTTCACTCCGCA 59.489 57.895 0.00 0.00 0.00 5.69
323 345 8.188139 ACAAGTTCAACTTCAAACGACATAAAT 58.812 29.630 0.00 0.00 36.03 1.40
339 361 5.006153 AGGGTTTAGCAAACAAGTTCAAC 57.994 39.130 11.93 0.00 43.15 3.18
354 376 5.092554 TCTCGCATTTGACATAGGGTTTA 57.907 39.130 0.00 0.00 0.00 2.01
643 670 2.192664 TGCTCCTATGTCGCCAAAAA 57.807 45.000 0.00 0.00 0.00 1.94
649 676 0.461961 ACTCCTTGCTCCTATGTCGC 59.538 55.000 0.00 0.00 0.00 5.19
650 677 3.215151 TCTACTCCTTGCTCCTATGTCG 58.785 50.000 0.00 0.00 0.00 4.35
661 691 4.766891 TCCCAAGCAAAAATCTACTCCTTG 59.233 41.667 0.00 0.00 0.00 3.61
701 732 1.503542 GCGGGTCATGTTTGCTCTG 59.496 57.895 0.00 0.00 0.00 3.35
733 765 1.665679 CCGAGATGGAACGAAATGGTG 59.334 52.381 0.00 0.00 42.00 4.17
772 804 3.896133 GCGGATCGTGGAGGCGTA 61.896 66.667 0.00 0.00 0.00 4.42
794 897 2.333926 CTGTGATTGGTTCGCTACGAA 58.666 47.619 0.00 0.00 43.75 3.85
1335 1529 2.928396 AGCCCCACCAAGTACGCT 60.928 61.111 0.00 0.00 0.00 5.07
1487 1712 3.957288 GGCTGGACAAAGGCTAAGA 57.043 52.632 0.00 0.00 39.56 2.10
1505 1730 3.623060 ACTAGCACGCATACATTTCCAAG 59.377 43.478 0.00 0.00 0.00 3.61
1543 1772 3.129462 AGATCAGACACACTACATCCACG 59.871 47.826 0.00 0.00 0.00 4.94
1603 1833 7.714377 AGATCTTAGAACAGATAGCCAACATTG 59.286 37.037 0.00 0.00 33.36 2.82
1651 1900 3.490800 TTCGTGCATCACATTCAATGG 57.509 42.857 1.58 0.00 33.40 3.16
1736 1990 6.490040 TCAAGCTAAATACTTGGAAGCAACTT 59.510 34.615 3.87 0.00 43.79 2.66
1737 1991 6.003950 TCAAGCTAAATACTTGGAAGCAACT 58.996 36.000 3.87 0.00 43.79 3.16
1738 1992 6.254281 TCAAGCTAAATACTTGGAAGCAAC 57.746 37.500 3.87 0.00 43.79 4.17
1739 1993 6.892658 TTCAAGCTAAATACTTGGAAGCAA 57.107 33.333 3.87 0.00 43.79 3.91
1740 1994 6.658816 TCATTCAAGCTAAATACTTGGAAGCA 59.341 34.615 3.87 0.00 43.79 3.91
1741 1995 7.088589 TCATTCAAGCTAAATACTTGGAAGC 57.911 36.000 3.87 0.00 43.79 3.86
1742 1996 7.646922 GCATCATTCAAGCTAAATACTTGGAAG 59.353 37.037 3.87 0.00 43.79 3.46
1743 1997 7.416664 GGCATCATTCAAGCTAAATACTTGGAA 60.417 37.037 3.87 0.00 43.79 3.53
1745 1999 6.040166 AGGCATCATTCAAGCTAAATACTTGG 59.960 38.462 3.87 0.00 43.79 3.61
1751 2005 4.442472 GCCAAGGCATCATTCAAGCTAAAT 60.442 41.667 6.14 0.00 41.49 1.40
1907 2207 3.341823 CAGTCACAGGGATCAAAAGGAG 58.658 50.000 0.00 0.00 0.00 3.69
1930 2230 1.800805 ACAGGTGAGAGTTGATTGCG 58.199 50.000 0.00 0.00 0.00 4.85
2027 2337 6.032775 GCGACATCAAATTTGATACAGTTGTG 59.967 38.462 28.61 19.20 45.62 3.33
2109 3336 1.069765 CTCAGCCACACCGTCAACT 59.930 57.895 0.00 0.00 0.00 3.16
2112 3339 4.314440 GCCTCAGCCACACCGTCA 62.314 66.667 0.00 0.00 0.00 4.35
2113 3340 4.314440 TGCCTCAGCCACACCGTC 62.314 66.667 0.00 0.00 38.69 4.79
2248 3602 8.023128 GTGTAAATGCATCTTAAGACATGTGTT 58.977 33.333 13.33 13.33 0.00 3.32
2250 3604 7.529158 TGTGTAAATGCATCTTAAGACATGTG 58.471 34.615 7.48 3.30 0.00 3.21
2265 3685 6.098679 TGCCAACAGAATTATGTGTAAATGC 58.901 36.000 6.46 4.56 31.84 3.56
2292 4067 8.388656 ACAAATATTTAGGAACAGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
2293 4068 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
2294 4069 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
2295 4070 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
2296 4071 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
2313 4088 9.965824 GTCCATTTGAATCTCTAAAAAGACAAA 57.034 29.630 0.00 0.00 30.50 2.83
2314 4089 9.354673 AGTCCATTTGAATCTCTAAAAAGACAA 57.645 29.630 0.00 0.00 30.54 3.18
2315 4090 8.924511 AGTCCATTTGAATCTCTAAAAAGACA 57.075 30.769 0.00 0.00 30.54 3.41
2317 4092 9.449719 GGTAGTCCATTTGAATCTCTAAAAAGA 57.550 33.333 0.00 0.00 0.00 2.52
2318 4093 9.231297 TGGTAGTCCATTTGAATCTCTAAAAAG 57.769 33.333 0.00 0.00 39.03 2.27
2319 4094 9.010029 GTGGTAGTCCATTTGAATCTCTAAAAA 57.990 33.333 0.00 0.00 46.20 1.94
2320 4095 8.160765 TGTGGTAGTCCATTTGAATCTCTAAAA 58.839 33.333 0.00 0.00 46.20 1.52
2321 4096 7.685481 TGTGGTAGTCCATTTGAATCTCTAAA 58.315 34.615 0.00 0.00 46.20 1.85
2322 4097 7.252612 TGTGGTAGTCCATTTGAATCTCTAA 57.747 36.000 0.00 0.00 46.20 2.10
2323 4098 6.867519 TGTGGTAGTCCATTTGAATCTCTA 57.132 37.500 0.00 0.00 46.20 2.43
2324 4099 5.762179 TGTGGTAGTCCATTTGAATCTCT 57.238 39.130 0.00 0.00 46.20 3.10
2325 4100 6.201044 CGTATGTGGTAGTCCATTTGAATCTC 59.799 42.308 0.00 0.00 46.20 2.75
2326 4101 6.049149 CGTATGTGGTAGTCCATTTGAATCT 58.951 40.000 0.00 0.00 46.20 2.40
2327 4102 6.046593 TCGTATGTGGTAGTCCATTTGAATC 58.953 40.000 0.00 0.00 46.20 2.52
2328 4103 5.984725 TCGTATGTGGTAGTCCATTTGAAT 58.015 37.500 0.00 0.00 46.20 2.57
2329 4104 5.408880 TCGTATGTGGTAGTCCATTTGAA 57.591 39.130 0.00 0.00 46.20 2.69
2330 4105 5.408880 TTCGTATGTGGTAGTCCATTTGA 57.591 39.130 0.00 0.00 46.20 2.69
2331 4106 5.584649 ACATTCGTATGTGGTAGTCCATTTG 59.415 40.000 6.89 0.00 46.20 2.32
2332 4107 5.741011 ACATTCGTATGTGGTAGTCCATTT 58.259 37.500 6.89 0.00 46.20 2.32
2333 4108 5.353394 ACATTCGTATGTGGTAGTCCATT 57.647 39.130 6.89 0.00 46.20 3.16
2334 4109 6.665992 ATACATTCGTATGTGGTAGTCCAT 57.334 37.500 16.91 0.00 44.56 3.41
2335 4110 7.770366 ATATACATTCGTATGTGGTAGTCCA 57.230 36.000 16.91 0.00 44.56 4.02
2336 4111 9.170734 TCTATATACATTCGTATGTGGTAGTCC 57.829 37.037 16.91 0.00 44.56 3.85
2337 4112 9.985318 GTCTATATACATTCGTATGTGGTAGTC 57.015 37.037 16.91 9.92 44.56 2.59
2338 4113 9.511272 TGTCTATATACATTCGTATGTGGTAGT 57.489 33.333 16.91 2.71 44.56 2.73
2374 4149 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2375 4150 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2376 4151 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2377 4152 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2378 4153 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2379 4154 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2380 4155 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2381 4156 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2382 4157 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2383 4158 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2384 4159 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2385 4160 6.757010 AGTAACTACATACGGAGCAAAATGAG 59.243 38.462 0.00 0.00 0.00 2.90
2386 4161 6.636705 AGTAACTACATACGGAGCAAAATGA 58.363 36.000 0.00 0.00 0.00 2.57
2387 4162 6.903883 AGTAACTACATACGGAGCAAAATG 57.096 37.500 0.00 0.00 0.00 2.32
2388 4163 6.877322 ACAAGTAACTACATACGGAGCAAAAT 59.123 34.615 0.00 0.00 0.00 1.82
2389 4164 6.225318 ACAAGTAACTACATACGGAGCAAAA 58.775 36.000 0.00 0.00 0.00 2.44
2390 4165 5.786311 ACAAGTAACTACATACGGAGCAAA 58.214 37.500 0.00 0.00 0.00 3.68
2391 4166 5.395682 ACAAGTAACTACATACGGAGCAA 57.604 39.130 0.00 0.00 0.00 3.91
2392 4167 5.047872 TCAACAAGTAACTACATACGGAGCA 60.048 40.000 0.00 0.00 0.00 4.26
2393 4168 5.404946 TCAACAAGTAACTACATACGGAGC 58.595 41.667 0.00 0.00 0.00 4.70
2394 4169 7.878477 TTTCAACAAGTAACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
2395 4170 8.308931 AGATTTCAACAAGTAACTACATACGGA 58.691 33.333 0.00 0.00 0.00 4.69
2396 4171 8.475331 AGATTTCAACAAGTAACTACATACGG 57.525 34.615 0.00 0.00 0.00 4.02
2397 4172 9.355215 AGAGATTTCAACAAGTAACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
2408 4183 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2421 4196 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2422 4197 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2423 4198 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2424 4199 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2425 4200 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2426 4201 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2427 4202 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2428 4203 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2429 4204 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2430 4205 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2431 4206 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2432 4207 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2433 4208 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2434 4209 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2435 4210 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2436 4211 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2437 4212 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2438 4213 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2439 4214 3.463048 AAACTACTCCCTCCGTTCCTA 57.537 47.619 0.00 0.00 0.00 2.94
2440 4215 2.322339 AAACTACTCCCTCCGTTCCT 57.678 50.000 0.00 0.00 0.00 3.36
2441 4216 4.081254 ACAATAAACTACTCCCTCCGTTCC 60.081 45.833 0.00 0.00 0.00 3.62
2442 4217 5.082251 ACAATAAACTACTCCCTCCGTTC 57.918 43.478 0.00 0.00 0.00 3.95
2443 4218 5.494390 AACAATAAACTACTCCCTCCGTT 57.506 39.130 0.00 0.00 0.00 4.44
2444 4219 5.494390 AAACAATAAACTACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
2445 4220 6.400568 TGTAAACAATAAACTACTCCCTCCG 58.599 40.000 0.00 0.00 0.00 4.63
2446 4221 7.827729 ACATGTAAACAATAAACTACTCCCTCC 59.172 37.037 0.00 0.00 0.00 4.30
2447 4222 8.788325 ACATGTAAACAATAAACTACTCCCTC 57.212 34.615 0.00 0.00 0.00 4.30
2474 4249 3.323979 GCTTCCTTGTCCCTATCGGATAA 59.676 47.826 0.00 0.00 44.66 1.75
2528 4330 5.475564 TGAAACCCTTTGGCTCACTAATTAC 59.524 40.000 0.00 0.00 33.59 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.