Multiple sequence alignment - TraesCS1B01G375500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G375500 chr1B 100.000 3136 0 0 1617 4752 606633262 606636397 0.000000e+00 5792.0
1 TraesCS1B01G375500 chr1B 100.000 915 0 0 526 1440 606632171 606633085 0.000000e+00 1690.0
2 TraesCS1B01G375500 chr1B 100.000 209 0 0 1 209 606631646 606631854 2.070000e-103 387.0
3 TraesCS1B01G375500 chr1A 95.568 1286 54 3 2677 3960 540655402 540656686 0.000000e+00 2056.0
4 TraesCS1B01G375500 chr1A 92.168 881 47 13 579 1440 540647686 540648563 0.000000e+00 1225.0
5 TraesCS1B01G375500 chr1A 95.017 602 19 6 2005 2597 540654806 540655405 0.000000e+00 935.0
6 TraesCS1B01G375500 chr1A 92.032 502 36 3 3950 4449 541057133 541057632 0.000000e+00 702.0
7 TraesCS1B01G375500 chr1A 95.572 271 12 0 1619 1889 540648627 540648897 7.300000e-118 435.0
8 TraesCS1B01G375500 chr1A 96.774 93 3 0 2594 2686 540345819 540345727 6.370000e-34 156.0
9 TraesCS1B01G375500 chr1A 95.833 96 2 2 2589 2684 133417459 133417552 2.290000e-33 154.0
10 TraesCS1B01G375500 chr1A 97.183 71 2 0 4682 4752 541057848 541057918 2.320000e-23 121.0
11 TraesCS1B01G375500 chr1A 97.059 34 1 0 1948 1981 540654767 540654800 1.850000e-04 58.4
12 TraesCS1B01G375500 chr1D 93.868 1272 58 13 2677 3937 445239957 445241219 0.000000e+00 1899.0
13 TraesCS1B01G375500 chr1D 93.890 982 36 3 1619 2597 445239000 445239960 0.000000e+00 1459.0
14 TraesCS1B01G375500 chr1D 95.036 685 33 1 753 1436 445238254 445238938 0.000000e+00 1075.0
15 TraesCS1B01G375500 chr1D 94.805 231 10 2 526 756 445238000 445238228 4.520000e-95 359.0
16 TraesCS1B01G375500 chr1D 98.701 77 1 0 80 156 445237694 445237770 2.310000e-28 137.0
17 TraesCS1B01G375500 chr1D 91.304 92 3 1 114 200 445237761 445237852 2.320000e-23 121.0
18 TraesCS1B01G375500 chr6D 96.842 95 3 0 2590 2684 34808919 34809013 4.920000e-35 159.0
19 TraesCS1B01G375500 chr6D 92.754 69 4 1 6 73 300516 300448 1.090000e-16 99.0
20 TraesCS1B01G375500 chr6D 89.474 76 5 3 1 74 441919456 441919530 5.060000e-15 93.5
21 TraesCS1B01G375500 chr5D 97.802 91 2 0 2594 2684 57226047 57225957 1.770000e-34 158.0
22 TraesCS1B01G375500 chr5D 89.474 76 5 3 1 74 465705869 465705943 5.060000e-15 93.5
23 TraesCS1B01G375500 chr5D 89.333 75 5 3 1 73 25038591 25038664 1.820000e-14 91.6
24 TraesCS1B01G375500 chr3D 92.661 109 6 2 2583 2691 584333727 584333621 6.370000e-34 156.0
25 TraesCS1B01G375500 chr3B 94.231 104 3 3 2590 2692 807575515 807575414 6.370000e-34 156.0
26 TraesCS1B01G375500 chr2A 95.833 96 3 1 2591 2685 20825027 20824932 2.290000e-33 154.0
27 TraesCS1B01G375500 chr7D 92.381 105 6 2 2583 2686 406244533 406244636 1.070000e-31 148.0
28 TraesCS1B01G375500 chr3A 86.822 129 10 6 2586 2712 686127444 686127567 2.310000e-28 137.0
29 TraesCS1B01G375500 chr3A 92.857 70 4 1 7 75 705591669 705591738 3.030000e-17 100.0
30 TraesCS1B01G375500 chr3A 91.549 71 5 1 7 76 574490360 574490290 3.910000e-16 97.1
31 TraesCS1B01G375500 chr7A 93.939 66 3 1 7 71 621582198 621582263 1.090000e-16 99.0
32 TraesCS1B01G375500 chr4D 92.424 66 4 1 7 71 77290379 77290314 5.060000e-15 93.5
33 TraesCS1B01G375500 chr4D 90.411 73 4 3 1 71 464369659 464369730 5.060000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G375500 chr1B 606631646 606636397 4751 False 2623.000000 5792 100.000000 1 4752 3 chr1B.!!$F1 4751
1 TraesCS1B01G375500 chr1A 540654767 540656686 1919 False 1016.466667 2056 95.881333 1948 3960 3 chr1A.!!$F3 2012
2 TraesCS1B01G375500 chr1A 540647686 540648897 1211 False 830.000000 1225 93.870000 579 1889 2 chr1A.!!$F2 1310
3 TraesCS1B01G375500 chr1A 541057133 541057918 785 False 411.500000 702 94.607500 3950 4752 2 chr1A.!!$F4 802
4 TraesCS1B01G375500 chr1D 445237694 445241219 3525 False 841.666667 1899 94.600667 80 3937 6 chr1D.!!$F1 3857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.164647 GTGTGCAAGTGACGCTGATC 59.835 55.0 0.00 0.0 0.00 2.92 F
1667 1741 0.167470 CTTGCTGACTGCCACATTCG 59.833 55.0 1.50 0.0 42.00 3.34 F
2066 2162 0.179032 TTTTCTTGGCCTGCGACAGA 60.179 50.0 3.32 0.0 32.44 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 1943 1.067295 TGAAATCAGGGTGCAGTCCT 58.933 50.0 2.84 2.84 34.39 3.85 R
3531 3637 0.460987 GAGAACCCTGCAGATCGGTG 60.461 60.0 17.39 0.00 0.00 4.94 R
4048 4166 0.890683 AAATGCAGCAACCCTACAGC 59.109 50.0 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.134401 ATGAGCGAGAGTGTGCAAG 57.866 52.632 0.00 0.00 0.00 4.01
19 20 0.319728 ATGAGCGAGAGTGTGCAAGT 59.680 50.000 0.00 0.00 0.00 3.16
20 21 0.598419 TGAGCGAGAGTGTGCAAGTG 60.598 55.000 0.00 0.00 0.00 3.16
21 22 0.319040 GAGCGAGAGTGTGCAAGTGA 60.319 55.000 0.00 0.00 0.00 3.41
22 23 0.598680 AGCGAGAGTGTGCAAGTGAC 60.599 55.000 0.00 0.00 0.00 3.67
23 24 1.880601 GCGAGAGTGTGCAAGTGACG 61.881 60.000 0.00 0.00 0.00 4.35
24 25 1.856012 GAGAGTGTGCAAGTGACGC 59.144 57.895 0.00 0.00 0.00 5.19
25 26 0.598680 GAGAGTGTGCAAGTGACGCT 60.599 55.000 0.00 0.00 36.87 5.07
26 27 0.877649 AGAGTGTGCAAGTGACGCTG 60.878 55.000 0.00 0.00 34.30 5.18
27 28 0.875908 GAGTGTGCAAGTGACGCTGA 60.876 55.000 0.00 0.00 34.30 4.26
28 29 0.250038 AGTGTGCAAGTGACGCTGAT 60.250 50.000 0.00 0.00 32.91 2.90
29 30 0.164647 GTGTGCAAGTGACGCTGATC 59.835 55.000 0.00 0.00 0.00 2.92
30 31 1.284297 TGTGCAAGTGACGCTGATCG 61.284 55.000 0.00 0.00 45.38 3.69
40 41 3.408389 CGCTGATCGTTGTGAGACT 57.592 52.632 0.00 0.00 0.00 3.24
41 42 1.263776 CGCTGATCGTTGTGAGACTC 58.736 55.000 0.00 0.00 0.00 3.36
42 43 1.634702 GCTGATCGTTGTGAGACTCC 58.365 55.000 0.00 0.00 0.00 3.85
43 44 1.737363 GCTGATCGTTGTGAGACTCCC 60.737 57.143 0.00 0.00 0.00 4.30
44 45 0.526211 TGATCGTTGTGAGACTCCCG 59.474 55.000 0.00 0.00 0.00 5.14
45 46 0.809385 GATCGTTGTGAGACTCCCGA 59.191 55.000 0.00 3.33 0.00 5.14
46 47 1.201647 GATCGTTGTGAGACTCCCGAA 59.798 52.381 0.00 0.00 0.00 4.30
47 48 0.596577 TCGTTGTGAGACTCCCGAAG 59.403 55.000 0.00 0.00 0.00 3.79
60 61 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
61 62 1.989163 CGAAGGAGCGCTCGTTAAC 59.011 57.895 36.96 26.47 37.75 2.01
62 63 0.456312 CGAAGGAGCGCTCGTTAACT 60.456 55.000 36.96 23.16 37.75 2.24
63 64 1.202110 CGAAGGAGCGCTCGTTAACTA 60.202 52.381 36.96 0.00 37.75 2.24
64 65 2.452105 GAAGGAGCGCTCGTTAACTAG 58.548 52.381 36.96 3.24 37.75 2.57
65 66 1.461559 AGGAGCGCTCGTTAACTAGT 58.538 50.000 29.81 3.95 0.00 2.57
66 67 1.817447 AGGAGCGCTCGTTAACTAGTT 59.183 47.619 29.81 13.68 0.00 2.24
67 68 3.012518 AGGAGCGCTCGTTAACTAGTTA 58.987 45.455 29.81 11.38 0.00 2.24
68 69 3.104470 GGAGCGCTCGTTAACTAGTTAC 58.896 50.000 29.81 8.45 0.00 2.50
69 70 3.181502 GGAGCGCTCGTTAACTAGTTACT 60.182 47.826 29.81 7.06 0.00 2.24
70 71 4.013582 AGCGCTCGTTAACTAGTTACTC 57.986 45.455 14.96 10.16 0.00 2.59
71 72 3.688673 AGCGCTCGTTAACTAGTTACTCT 59.311 43.478 14.96 1.35 0.00 3.24
72 73 4.027724 GCGCTCGTTAACTAGTTACTCTC 58.972 47.826 14.96 5.73 0.00 3.20
73 74 4.201802 GCGCTCGTTAACTAGTTACTCTCT 60.202 45.833 14.96 0.00 0.00 3.10
74 75 5.673318 GCGCTCGTTAACTAGTTACTCTCTT 60.673 44.000 14.96 0.00 0.00 2.85
75 76 6.456181 GCGCTCGTTAACTAGTTACTCTCTTA 60.456 42.308 14.96 0.00 0.00 2.10
76 77 7.118724 CGCTCGTTAACTAGTTACTCTCTTAG 58.881 42.308 14.96 7.22 0.00 2.18
77 78 7.201513 CGCTCGTTAACTAGTTACTCTCTTAGT 60.202 40.741 14.96 0.00 42.62 2.24
78 79 7.904461 GCTCGTTAACTAGTTACTCTCTTAGTG 59.096 40.741 14.96 3.68 39.39 2.74
135 169 2.000048 AGGAGGCCCTATTGGTTTCAA 59.000 47.619 0.00 0.00 42.15 2.69
204 243 4.697756 CAAGCACGCTCGGGGGAA 62.698 66.667 6.26 0.00 0.00 3.97
205 244 4.394712 AAGCACGCTCGGGGGAAG 62.395 66.667 6.26 0.00 0.00 3.46
208 247 4.821589 CACGCTCGGGGGAAGCTC 62.822 72.222 6.26 0.00 37.62 4.09
573 612 0.323451 GTTTTGGGCGGATCCTTCCT 60.323 55.000 10.75 0.00 40.17 3.36
690 729 5.765182 ACATGATTAATTCTAGCCTTTCGGG 59.235 40.000 0.00 0.00 38.36 5.14
701 740 1.401905 GCCTTTCGGGTTGCTATCTTG 59.598 52.381 0.00 0.00 37.43 3.02
722 761 2.058057 GCTTGCACCCAAACGTTTATG 58.942 47.619 14.20 13.11 0.00 1.90
740 779 5.702065 TTATGTGGTGATTTAGCCAGGTA 57.298 39.130 0.00 0.00 35.14 3.08
749 794 1.111116 TTAGCCAGGTATCCGGGTCG 61.111 60.000 0.00 0.00 40.98 4.79
752 797 2.201022 CCAGGTATCCGGGTCGAGG 61.201 68.421 0.00 0.00 34.16 4.63
754 799 1.041447 CAGGTATCCGGGTCGAGGTT 61.041 60.000 0.00 0.00 0.00 3.50
807 880 3.892200 GGTTACTCACCGGTTCGAA 57.108 52.632 2.97 0.00 35.12 3.71
829 902 6.463995 AAAATTTTGTGGAGAGCTGTTGTA 57.536 33.333 1.75 0.00 0.00 2.41
834 907 1.002544 GTGGAGAGCTGTTGTAAGGCT 59.997 52.381 0.00 0.00 39.16 4.58
847 920 5.932303 TGTTGTAAGGCTTTAGCTTGTCTAG 59.068 40.000 4.45 0.00 41.70 2.43
848 921 5.740290 TGTAAGGCTTTAGCTTGTCTAGT 57.260 39.130 4.45 0.00 41.70 2.57
878 951 7.800155 TTCACTCAGTTGAACATTTGTATCA 57.200 32.000 0.00 0.00 30.29 2.15
906 979 3.317993 GGTCACCTGTAAGTTTGCAACAT 59.682 43.478 0.00 0.00 0.00 2.71
936 1009 7.227049 TGCGGATTATCTACTGACAATCATA 57.773 36.000 0.00 0.00 37.73 2.15
1162 1235 3.325135 AGCTACAAAGGCAAGTCTGTACT 59.675 43.478 0.00 0.00 37.65 2.73
1178 1251 9.601810 AAGTCTGTACTATCCATATGTCCATTA 57.398 33.333 1.24 0.00 33.75 1.90
1667 1741 0.167470 CTTGCTGACTGCCACATTCG 59.833 55.000 1.50 0.00 42.00 3.34
1692 1766 5.371115 TTGCCTACTGTTGTTGAATTAGC 57.629 39.130 0.00 0.00 0.00 3.09
1698 1772 6.371548 CCTACTGTTGTTGAATTAGCTGCTTA 59.628 38.462 7.79 0.00 0.00 3.09
1848 1922 6.372937 GGGCATAGCAAAGGTAGATAATCTTC 59.627 42.308 0.00 0.00 0.00 2.87
1855 1929 7.015292 AGCAAAGGTAGATAATCTTCGGTCATA 59.985 37.037 0.00 0.00 0.00 2.15
1925 2000 7.745620 AGAAGTTCATTACAAGGTTTACTGG 57.254 36.000 5.50 0.00 0.00 4.00
1938 2013 7.733047 ACAAGGTTTACTGGAAGGGAAAATAAT 59.267 33.333 0.00 0.00 39.30 1.28
1977 2052 3.117888 TCAGATAGCCCATTCCCAACTTC 60.118 47.826 0.00 0.00 0.00 3.01
1981 2056 0.629058 GCCCATTCCCAACTTCCCTA 59.371 55.000 0.00 0.00 0.00 3.53
1982 2057 1.006639 GCCCATTCCCAACTTCCCTAA 59.993 52.381 0.00 0.00 0.00 2.69
1989 2064 6.410853 CCATTCCCAACTTCCCTAATACAGAT 60.411 42.308 0.00 0.00 0.00 2.90
1997 2072 9.627123 CAACTTCCCTAATACAGATGGAAAATA 57.373 33.333 0.00 0.00 34.85 1.40
2064 2160 2.800516 TTTTTCTTGGCCTGCGACA 58.199 47.368 3.32 0.00 0.00 4.35
2065 2161 0.667993 TTTTTCTTGGCCTGCGACAG 59.332 50.000 3.32 0.00 0.00 3.51
2066 2162 0.179032 TTTTCTTGGCCTGCGACAGA 60.179 50.000 3.32 0.00 32.44 3.41
2067 2163 0.603707 TTTCTTGGCCTGCGACAGAG 60.604 55.000 3.32 0.00 32.44 3.35
2068 2164 1.758440 TTCTTGGCCTGCGACAGAGT 61.758 55.000 3.32 0.00 32.44 3.24
2069 2165 1.302033 CTTGGCCTGCGACAGAGTT 60.302 57.895 3.32 0.00 32.44 3.01
2070 2166 0.886490 CTTGGCCTGCGACAGAGTTT 60.886 55.000 3.32 0.00 32.44 2.66
2071 2167 1.165907 TTGGCCTGCGACAGAGTTTG 61.166 55.000 3.32 0.00 32.44 2.93
2072 2168 1.301716 GGCCTGCGACAGAGTTTGA 60.302 57.895 0.00 0.00 32.44 2.69
2073 2169 0.674895 GGCCTGCGACAGAGTTTGAT 60.675 55.000 0.00 0.00 32.44 2.57
2074 2170 1.160137 GCCTGCGACAGAGTTTGATT 58.840 50.000 8.20 0.00 32.44 2.57
2263 2361 0.915364 GGACCCAAGATCTTCCTGCT 59.085 55.000 4.57 0.00 0.00 4.24
2328 2426 9.467030 ACTCCCTTAGGAAAATTATAGAAGGAT 57.533 33.333 0.00 0.00 43.40 3.24
2348 2446 7.472334 AGGATGTCATATAAATTGGAATGGC 57.528 36.000 0.00 0.00 0.00 4.40
2365 2463 0.394216 GGCCCTGTGTGCACATATCA 60.394 55.000 24.69 15.40 41.01 2.15
2458 2556 1.202452 GCTTTCTGTGTTTGCTGCCTT 60.202 47.619 0.00 0.00 0.00 4.35
2462 2567 1.134128 TCTGTGTTTGCTGCCTTCTGA 60.134 47.619 0.00 0.00 0.00 3.27
2464 2569 2.295349 CTGTGTTTGCTGCCTTCTGAAT 59.705 45.455 0.00 0.00 0.00 2.57
2481 2586 6.471233 TCTGAATGGACCTCTACAATGTAG 57.529 41.667 13.92 13.92 0.00 2.74
2593 2698 5.765182 GCCTCCTATGCTTTACATGTATGTT 59.235 40.000 6.36 0.00 41.97 2.71
2594 2699 6.934645 GCCTCCTATGCTTTACATGTATGTTA 59.065 38.462 6.36 0.00 41.97 2.41
2595 2700 7.095187 GCCTCCTATGCTTTACATGTATGTTAC 60.095 40.741 6.36 0.00 41.97 2.50
2596 2701 8.150945 CCTCCTATGCTTTACATGTATGTTACT 58.849 37.037 6.36 0.00 41.97 2.24
2597 2702 9.197694 CTCCTATGCTTTACATGTATGTTACTC 57.802 37.037 6.36 0.00 41.97 2.59
2598 2703 8.148351 TCCTATGCTTTACATGTATGTTACTCC 58.852 37.037 6.36 0.00 41.97 3.85
2599 2704 7.387948 CCTATGCTTTACATGTATGTTACTCCC 59.612 40.741 6.36 0.00 41.97 4.30
2600 2705 6.308015 TGCTTTACATGTATGTTACTCCCT 57.692 37.500 6.36 0.00 41.97 4.20
2601 2706 6.346096 TGCTTTACATGTATGTTACTCCCTC 58.654 40.000 6.36 0.00 41.97 4.30
2602 2707 5.758784 GCTTTACATGTATGTTACTCCCTCC 59.241 44.000 6.36 0.00 41.97 4.30
2603 2708 5.524971 TTACATGTATGTTACTCCCTCCG 57.475 43.478 6.36 0.00 41.97 4.63
2604 2709 3.371965 ACATGTATGTTACTCCCTCCGT 58.628 45.455 0.00 0.00 37.90 4.69
2605 2710 4.539726 ACATGTATGTTACTCCCTCCGTA 58.460 43.478 0.00 0.00 37.90 4.02
2606 2711 4.957954 ACATGTATGTTACTCCCTCCGTAA 59.042 41.667 0.00 0.00 37.90 3.18
2607 2712 5.422970 ACATGTATGTTACTCCCTCCGTAAA 59.577 40.000 0.00 0.00 37.90 2.01
2608 2713 5.329035 TGTATGTTACTCCCTCCGTAAAC 57.671 43.478 0.00 0.00 0.00 2.01
2609 2714 5.018809 TGTATGTTACTCCCTCCGTAAACT 58.981 41.667 0.00 0.00 0.00 2.66
2610 2715 6.186957 TGTATGTTACTCCCTCCGTAAACTA 58.813 40.000 0.00 0.00 0.00 2.24
2611 2716 6.663093 TGTATGTTACTCCCTCCGTAAACTAA 59.337 38.462 0.00 0.00 0.00 2.24
2612 2717 6.803366 ATGTTACTCCCTCCGTAAACTAAT 57.197 37.500 0.00 0.00 0.00 1.73
2613 2718 7.902920 ATGTTACTCCCTCCGTAAACTAATA 57.097 36.000 0.00 0.00 0.00 0.98
2614 2719 7.902920 TGTTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
2615 2720 8.995027 TGTTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
2616 2721 9.420118 TGTTACTCCCTCCGTAAACTAATATAA 57.580 33.333 0.00 0.00 0.00 0.98
2617 2722 9.905171 GTTACTCCCTCCGTAAACTAATATAAG 57.095 37.037 0.00 0.00 0.00 1.73
2618 2723 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
2619 2724 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2620 2725 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2621 2726 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
2622 2727 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
2623 2728 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
2624 2729 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
2654 2759 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2655 2760 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2656 2761 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2657 2762 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2672 2777 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2673 2778 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2674 2779 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2675 2780 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2774 2879 5.126067 GCTTCCATGTACCATGATGTTACT 58.874 41.667 5.80 0.00 0.00 2.24
2912 3017 5.782893 AAGGTGTAAGTTTGCTGCATTTA 57.217 34.783 1.84 0.47 0.00 1.40
3045 3150 5.699097 TCCCGAGTTTTCCAAGTAAAATG 57.301 39.130 0.00 0.00 31.43 2.32
3046 3151 5.134661 TCCCGAGTTTTCCAAGTAAAATGT 58.865 37.500 0.00 0.00 31.43 2.71
3128 3233 6.316390 CCAGTTAACAAGATCAGGTTATGACC 59.684 42.308 8.61 0.00 46.92 4.02
3173 3278 8.418662 ACAATACATGAGAATCCATTGAATTGG 58.581 33.333 0.00 0.00 38.18 3.16
3202 3307 8.709646 AGTTTAGTCAGTTATTTGTAAGCTTCG 58.290 33.333 0.00 0.00 0.00 3.79
3228 3333 2.158813 CCTTATGTCAACCATAGGCGGT 60.159 50.000 0.00 0.00 42.71 5.68
3263 3369 9.547753 TTTGTTTCTCTGCTTATATCCATAGAC 57.452 33.333 0.00 0.00 0.00 2.59
3264 3370 8.484214 TGTTTCTCTGCTTATATCCATAGACT 57.516 34.615 0.00 0.00 0.00 3.24
3265 3371 8.363390 TGTTTCTCTGCTTATATCCATAGACTG 58.637 37.037 0.00 0.00 0.00 3.51
3266 3372 8.580720 GTTTCTCTGCTTATATCCATAGACTGA 58.419 37.037 0.00 0.00 0.00 3.41
3268 3374 8.891985 TCTCTGCTTATATCCATAGACTGAAT 57.108 34.615 0.00 0.00 0.00 2.57
3269 3375 8.747471 TCTCTGCTTATATCCATAGACTGAATG 58.253 37.037 0.00 0.00 0.00 2.67
3270 3376 8.427902 TCTGCTTATATCCATAGACTGAATGT 57.572 34.615 0.00 0.00 0.00 2.71
3271 3377 8.309656 TCTGCTTATATCCATAGACTGAATGTG 58.690 37.037 0.00 0.00 0.00 3.21
3272 3378 6.875726 TGCTTATATCCATAGACTGAATGTGC 59.124 38.462 0.00 0.00 0.00 4.57
3273 3379 6.875726 GCTTATATCCATAGACTGAATGTGCA 59.124 38.462 0.00 0.00 0.00 4.57
3334 3440 4.625564 GCCCCAGTGTTATGCTTACTTACT 60.626 45.833 0.00 0.00 0.00 2.24
3420 3526 0.730265 GTCTGCGAGATCGTCTGAGT 59.270 55.000 3.94 0.00 42.22 3.41
3426 3532 2.285950 GCGAGATCGTCTGAGTACTGAC 60.286 54.545 0.00 1.15 42.22 3.51
3435 3541 2.041216 TCTGAGTACTGACACCCTGCTA 59.959 50.000 0.00 0.00 0.00 3.49
3501 3607 0.813610 TGCACCTGAACCAACTCACG 60.814 55.000 0.00 0.00 0.00 4.35
3531 3637 7.550196 ACAACCCAATCATTGAGAAAAATATGC 59.450 33.333 0.00 0.00 0.00 3.14
3577 3683 2.037121 TCACGGCTCTGAAGATGAAACA 59.963 45.455 0.00 0.00 0.00 2.83
3837 3943 2.353406 GGCCTGTGTATAGTCGTTGTGT 60.353 50.000 0.00 0.00 0.00 3.72
3960 4076 6.129115 CGAATTGGGCAATATCGCAAAATTAG 60.129 38.462 0.00 0.00 41.23 1.73
3964 4080 5.825679 TGGGCAATATCGCAAAATTAGTAGT 59.174 36.000 0.00 0.00 0.00 2.73
3967 4083 7.308589 GGGCAATATCGCAAAATTAGTAGTCAT 60.309 37.037 0.00 0.00 0.00 3.06
3975 4091 8.511321 TCGCAAAATTAGTAGTCATGTGAAATT 58.489 29.630 0.00 0.00 0.00 1.82
3983 4099 9.665719 TTAGTAGTCATGTGAAATTGATTGCTA 57.334 29.630 0.00 0.00 29.86 3.49
3993 4109 6.089954 GTGAAATTGATTGCTAAGGTGAAAGC 59.910 38.462 0.00 0.00 39.25 3.51
4011 4129 0.450983 GCAGCACTGAAGCCATCTTC 59.549 55.000 0.81 0.00 46.85 2.87
4013 4131 2.434428 CAGCACTGAAGCCATCTTCTT 58.566 47.619 6.60 0.00 46.81 2.52
4023 4141 2.716217 GCCATCTTCTTACAGGCTTGT 58.284 47.619 6.72 6.72 42.01 3.16
4025 4143 4.261801 GCCATCTTCTTACAGGCTTGTAA 58.738 43.478 19.07 19.07 45.15 2.41
4031 4149 7.672983 TCTTCTTACAGGCTTGTAATGAAAG 57.327 36.000 20.27 20.53 45.90 2.62
4033 4151 7.719633 TCTTCTTACAGGCTTGTAATGAAAGTT 59.280 33.333 20.27 0.00 45.90 2.66
4109 4227 1.855213 GCACATTCGGCAGCACAAGA 61.855 55.000 0.00 0.00 0.00 3.02
4138 4256 5.063880 GCATTATCAATAAACTCCGGGACT 58.936 41.667 0.00 0.00 0.00 3.85
4165 4283 2.439156 GGGACCTGACATGGCTGC 60.439 66.667 0.00 0.00 0.00 5.25
4186 4304 2.359900 GATGAACTTGCAACCCTCGAT 58.640 47.619 0.00 0.00 0.00 3.59
4222 4340 4.836125 TTCTTCTGCACTTCAACCATTC 57.164 40.909 0.00 0.00 0.00 2.67
4241 4359 2.359975 GCAGGACGAACCAAGGGG 60.360 66.667 0.00 0.00 42.04 4.79
4272 4390 6.248433 TCCATGCAATTCTAGGAAAGACTTT 58.752 36.000 0.00 0.00 32.51 2.66
4281 4399 9.447157 AATTCTAGGAAAGACTTTCATCTGAAG 57.553 33.333 25.38 14.66 41.43 3.02
4291 4409 8.189119 AGACTTTCATCTGAAGAACTTCTAGT 57.811 34.615 14.31 0.00 40.14 2.57
4318 4436 7.727331 AGACTATGATGCATCTTAAAAGAGC 57.273 36.000 26.32 12.09 38.66 4.09
4322 4440 8.910944 ACTATGATGCATCTTAAAAGAGCAAAT 58.089 29.630 26.32 9.89 40.17 2.32
4326 4444 9.926158 TGATGCATCTTAAAAGAGCAAATAAAA 57.074 25.926 26.32 0.00 40.17 1.52
4402 4520 9.668497 AAGTCTGTTTTAGTCTTTTAACACTCT 57.332 29.630 0.00 0.00 31.98 3.24
4410 4528 2.028385 TCTTTTAACACTCTCGGCCTCC 60.028 50.000 0.00 0.00 0.00 4.30
4417 4535 1.746991 CTCTCGGCCTCCTTTTGCC 60.747 63.158 0.00 0.00 44.41 4.52
4422 4540 1.667722 GGCCTCCTTTTGCCTGTTG 59.332 57.895 0.00 0.00 44.46 3.33
4425 4543 0.593128 CCTCCTTTTGCCTGTTGTCG 59.407 55.000 0.00 0.00 0.00 4.35
4449 4567 7.920151 TCGCATTCTTTCTGAATTTTGAAGAAA 59.080 29.630 4.59 8.06 43.00 2.52
4471 4621 9.588096 AGAAATAAACTGGGACAAAACTTATCT 57.412 29.630 0.00 0.00 38.70 1.98
4496 4646 6.715280 TGCATCTCATAGAGGAAAAGAAACT 58.285 36.000 0.00 0.00 0.00 2.66
4500 4650 8.825745 CATCTCATAGAGGAAAAGAAACTAAGC 58.174 37.037 0.00 0.00 0.00 3.09
4512 4662 5.234466 AGAAACTAAGCCAGATGACTTGT 57.766 39.130 0.00 0.00 0.00 3.16
4514 4664 6.951971 AGAAACTAAGCCAGATGACTTGTAT 58.048 36.000 0.00 0.00 0.00 2.29
4526 4677 4.431416 TGACTTGTATCACCCACTGTTT 57.569 40.909 0.00 0.00 0.00 2.83
4529 4680 4.985538 ACTTGTATCACCCACTGTTTCAT 58.014 39.130 0.00 0.00 0.00 2.57
4534 4685 6.774673 TGTATCACCCACTGTTTCATCTAAA 58.225 36.000 0.00 0.00 0.00 1.85
4535 4686 7.227873 TGTATCACCCACTGTTTCATCTAAAA 58.772 34.615 0.00 0.00 0.00 1.52
4574 4725 4.405358 AGCAAAACTCAAAAATCAGGACCA 59.595 37.500 0.00 0.00 0.00 4.02
4582 4733 5.912892 TCAAAAATCAGGACCAAAAGAACC 58.087 37.500 0.00 0.00 0.00 3.62
4584 4735 6.836527 TCAAAAATCAGGACCAAAAGAACCTA 59.163 34.615 0.00 0.00 0.00 3.08
4585 4736 7.343316 TCAAAAATCAGGACCAAAAGAACCTAA 59.657 33.333 0.00 0.00 0.00 2.69
4588 4739 7.669089 AATCAGGACCAAAAGAACCTAAAAA 57.331 32.000 0.00 0.00 0.00 1.94
4592 4743 5.243060 AGGACCAAAAGAACCTAAAAATCCG 59.757 40.000 0.00 0.00 0.00 4.18
4612 4763 6.008696 TCCGGAAACCCATTATTAACTGAT 57.991 37.500 0.00 0.00 0.00 2.90
4613 4764 7.139287 TCCGGAAACCCATTATTAACTGATA 57.861 36.000 0.00 0.00 0.00 2.15
4614 4765 7.221450 TCCGGAAACCCATTATTAACTGATAG 58.779 38.462 0.00 0.00 0.00 2.08
4615 4766 7.071447 TCCGGAAACCCATTATTAACTGATAGA 59.929 37.037 0.00 0.00 0.00 1.98
4616 4767 7.387948 CCGGAAACCCATTATTAACTGATAGAG 59.612 40.741 0.00 0.00 0.00 2.43
4617 4768 8.148351 CGGAAACCCATTATTAACTGATAGAGA 58.852 37.037 0.00 0.00 0.00 3.10
4622 4773 8.778059 ACCCATTATTAACTGATAGAGACCAAA 58.222 33.333 0.00 0.00 0.00 3.28
4631 4782 5.363868 ACTGATAGAGACCAAATGATTCCGA 59.636 40.000 0.00 0.00 0.00 4.55
4636 4787 5.749462 AGAGACCAAATGATTCCGAAATCT 58.251 37.500 0.00 0.00 41.63 2.40
4644 4795 7.223971 CCAAATGATTCCGAAATCTAGACGTTA 59.776 37.037 0.00 0.00 41.63 3.18
4645 4796 7.695869 AATGATTCCGAAATCTAGACGTTAC 57.304 36.000 0.00 0.00 41.63 2.50
4646 4797 6.446781 TGATTCCGAAATCTAGACGTTACT 57.553 37.500 0.00 0.00 41.63 2.24
4647 4798 6.860080 TGATTCCGAAATCTAGACGTTACTT 58.140 36.000 0.00 0.00 41.63 2.24
4648 4799 7.318141 TGATTCCGAAATCTAGACGTTACTTT 58.682 34.615 0.00 0.00 41.63 2.66
4649 4800 7.816031 TGATTCCGAAATCTAGACGTTACTTTT 59.184 33.333 0.00 0.00 41.63 2.27
4650 4801 7.572502 TTCCGAAATCTAGACGTTACTTTTC 57.427 36.000 0.00 0.00 0.00 2.29
4651 4802 6.095377 TCCGAAATCTAGACGTTACTTTTCC 58.905 40.000 0.00 0.00 0.00 3.13
4652 4803 5.865552 CCGAAATCTAGACGTTACTTTTCCA 59.134 40.000 0.00 0.00 0.00 3.53
4653 4804 6.534079 CCGAAATCTAGACGTTACTTTTCCAT 59.466 38.462 0.00 0.00 0.00 3.41
4654 4805 7.064253 CCGAAATCTAGACGTTACTTTTCCATT 59.936 37.037 0.00 0.00 0.00 3.16
4655 4806 8.108782 CGAAATCTAGACGTTACTTTTCCATTC 58.891 37.037 0.00 0.00 0.00 2.67
4656 4807 7.845066 AATCTAGACGTTACTTTTCCATTCC 57.155 36.000 0.00 0.00 0.00 3.01
4657 4808 6.600882 TCTAGACGTTACTTTTCCATTCCT 57.399 37.500 0.00 0.00 0.00 3.36
4658 4809 6.628185 TCTAGACGTTACTTTTCCATTCCTC 58.372 40.000 0.00 0.00 0.00 3.71
4659 4810 5.485209 AGACGTTACTTTTCCATTCCTCT 57.515 39.130 0.00 0.00 0.00 3.69
4660 4811 5.480205 AGACGTTACTTTTCCATTCCTCTC 58.520 41.667 0.00 0.00 0.00 3.20
4661 4812 5.011738 AGACGTTACTTTTCCATTCCTCTCA 59.988 40.000 0.00 0.00 0.00 3.27
4662 4813 5.617252 ACGTTACTTTTCCATTCCTCTCAA 58.383 37.500 0.00 0.00 0.00 3.02
4663 4814 6.238648 ACGTTACTTTTCCATTCCTCTCAAT 58.761 36.000 0.00 0.00 0.00 2.57
4664 4815 6.715264 ACGTTACTTTTCCATTCCTCTCAATT 59.285 34.615 0.00 0.00 0.00 2.32
4665 4816 7.094762 ACGTTACTTTTCCATTCCTCTCAATTC 60.095 37.037 0.00 0.00 0.00 2.17
4666 4817 5.886960 ACTTTTCCATTCCTCTCAATTCG 57.113 39.130 0.00 0.00 0.00 3.34
4667 4818 4.702131 ACTTTTCCATTCCTCTCAATTCGG 59.298 41.667 0.00 0.00 0.00 4.30
4668 4819 4.568072 TTTCCATTCCTCTCAATTCGGA 57.432 40.909 0.00 0.00 0.00 4.55
4669 4820 4.778213 TTCCATTCCTCTCAATTCGGAT 57.222 40.909 0.00 0.00 0.00 4.18
4670 4821 4.077300 TCCATTCCTCTCAATTCGGATG 57.923 45.455 0.00 0.00 0.00 3.51
4671 4822 3.144506 CCATTCCTCTCAATTCGGATGG 58.855 50.000 0.00 0.00 0.00 3.51
4672 4823 3.181451 CCATTCCTCTCAATTCGGATGGA 60.181 47.826 0.00 0.00 32.20 3.41
4673 4824 4.506271 CCATTCCTCTCAATTCGGATGGAT 60.506 45.833 0.00 0.00 32.20 3.41
4674 4825 5.280164 CCATTCCTCTCAATTCGGATGGATA 60.280 44.000 0.00 0.00 32.20 2.59
4675 4826 5.474578 TTCCTCTCAATTCGGATGGATAG 57.525 43.478 0.00 0.00 0.00 2.08
4676 4827 4.740902 TCCTCTCAATTCGGATGGATAGA 58.259 43.478 0.00 0.00 0.00 1.98
4677 4828 5.336945 TCCTCTCAATTCGGATGGATAGAT 58.663 41.667 0.00 0.00 0.00 1.98
4678 4829 5.186603 TCCTCTCAATTCGGATGGATAGATG 59.813 44.000 0.00 0.00 0.00 2.90
4679 4830 5.186603 CCTCTCAATTCGGATGGATAGATGA 59.813 44.000 0.00 0.00 0.00 2.92
4680 4831 6.030548 TCTCAATTCGGATGGATAGATGAC 57.969 41.667 0.00 0.00 0.00 3.06
4746 4897 1.202580 GGGTGGTTCCTGATGAGATCG 60.203 57.143 0.00 0.00 36.25 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.319728 ACTTGCACACTCTCGCTCAT 59.680 50.000 0.00 0.00 0.00 2.90
1 2 0.598419 CACTTGCACACTCTCGCTCA 60.598 55.000 0.00 0.00 0.00 4.26
2 3 0.319040 TCACTTGCACACTCTCGCTC 60.319 55.000 0.00 0.00 0.00 5.03
3 4 0.598680 GTCACTTGCACACTCTCGCT 60.599 55.000 0.00 0.00 0.00 4.93
4 5 1.856012 GTCACTTGCACACTCTCGC 59.144 57.895 0.00 0.00 0.00 5.03
5 6 1.880601 GCGTCACTTGCACACTCTCG 61.881 60.000 0.00 0.00 0.00 4.04
6 7 0.598680 AGCGTCACTTGCACACTCTC 60.599 55.000 0.00 0.00 33.85 3.20
7 8 0.877649 CAGCGTCACTTGCACACTCT 60.878 55.000 0.00 0.00 33.85 3.24
8 9 0.875908 TCAGCGTCACTTGCACACTC 60.876 55.000 0.00 0.00 33.85 3.51
9 10 0.250038 ATCAGCGTCACTTGCACACT 60.250 50.000 0.00 0.00 33.85 3.55
10 11 0.164647 GATCAGCGTCACTTGCACAC 59.835 55.000 0.00 0.00 33.85 3.82
11 12 1.284297 CGATCAGCGTCACTTGCACA 61.284 55.000 0.00 0.00 34.64 4.57
12 13 1.417592 CGATCAGCGTCACTTGCAC 59.582 57.895 0.00 0.00 34.64 4.57
13 14 3.860717 CGATCAGCGTCACTTGCA 58.139 55.556 0.00 0.00 34.64 4.08
23 24 1.634702 GGAGTCTCACAACGATCAGC 58.365 55.000 1.47 0.00 0.00 4.26
24 25 1.468224 CGGGAGTCTCACAACGATCAG 60.468 57.143 2.35 0.00 0.00 2.90
25 26 0.526211 CGGGAGTCTCACAACGATCA 59.474 55.000 2.35 0.00 0.00 2.92
26 27 0.809385 TCGGGAGTCTCACAACGATC 59.191 55.000 2.35 0.00 0.00 3.69
27 28 1.202582 CTTCGGGAGTCTCACAACGAT 59.797 52.381 2.35 0.00 0.00 3.73
28 29 0.596577 CTTCGGGAGTCTCACAACGA 59.403 55.000 2.35 3.76 0.00 3.85
29 30 0.388649 CCTTCGGGAGTCTCACAACG 60.389 60.000 2.35 1.40 37.25 4.10
30 31 0.966920 TCCTTCGGGAGTCTCACAAC 59.033 55.000 2.35 0.00 39.58 3.32
31 32 3.450282 TCCTTCGGGAGTCTCACAA 57.550 52.632 2.35 0.00 39.58 3.33
41 42 2.552585 TTAACGAGCGCTCCTTCGGG 62.553 60.000 30.66 17.99 0.00 5.14
42 43 1.153901 TTAACGAGCGCTCCTTCGG 60.154 57.895 30.66 18.71 0.00 4.30
43 44 0.456312 AGTTAACGAGCGCTCCTTCG 60.456 55.000 30.66 22.24 0.00 3.79
44 45 2.159407 ACTAGTTAACGAGCGCTCCTTC 60.159 50.000 30.66 14.44 0.00 3.46
45 46 1.817447 ACTAGTTAACGAGCGCTCCTT 59.183 47.619 30.66 26.03 0.00 3.36
46 47 1.461559 ACTAGTTAACGAGCGCTCCT 58.538 50.000 30.66 22.52 0.00 3.69
47 48 2.274920 AACTAGTTAACGAGCGCTCC 57.725 50.000 30.66 16.60 0.00 4.70
48 49 4.013582 AGTAACTAGTTAACGAGCGCTC 57.986 45.455 27.64 27.64 0.00 5.03
49 50 3.688673 AGAGTAACTAGTTAACGAGCGCT 59.311 43.478 11.27 11.27 0.00 5.92
50 51 4.013582 AGAGTAACTAGTTAACGAGCGC 57.986 45.455 16.82 0.00 0.00 5.92
51 52 5.467902 AGAGAGTAACTAGTTAACGAGCG 57.532 43.478 16.82 1.04 0.00 5.03
52 53 7.904461 CACTAAGAGAGTAACTAGTTAACGAGC 59.096 40.741 16.82 4.65 35.64 5.03
53 54 7.904461 GCACTAAGAGAGTAACTAGTTAACGAG 59.096 40.741 16.82 13.50 35.64 4.18
54 55 7.148340 GGCACTAAGAGAGTAACTAGTTAACGA 60.148 40.741 16.82 0.00 35.64 3.85
55 56 6.966066 GGCACTAAGAGAGTAACTAGTTAACG 59.034 42.308 16.82 4.72 35.64 3.18
56 57 7.257003 GGGCACTAAGAGAGTAACTAGTTAAC 58.743 42.308 16.82 13.41 35.64 2.01
57 58 6.379417 GGGGCACTAAGAGAGTAACTAGTTAA 59.621 42.308 16.82 0.00 35.64 2.01
58 59 5.890419 GGGGCACTAAGAGAGTAACTAGTTA 59.110 44.000 11.38 11.38 35.64 2.24
59 60 4.710865 GGGGCACTAAGAGAGTAACTAGTT 59.289 45.833 13.68 13.68 35.64 2.24
60 61 4.264262 TGGGGCACTAAGAGAGTAACTAGT 60.264 45.833 0.00 0.00 35.64 2.57
61 62 4.279145 TGGGGCACTAAGAGAGTAACTAG 58.721 47.826 0.00 0.00 35.64 2.57
62 63 4.326600 TGGGGCACTAAGAGAGTAACTA 57.673 45.455 0.00 0.00 35.64 2.24
63 64 3.185880 TGGGGCACTAAGAGAGTAACT 57.814 47.619 0.00 0.00 35.64 2.24
64 65 4.081087 TGAATGGGGCACTAAGAGAGTAAC 60.081 45.833 0.00 0.00 35.64 2.50
65 66 4.101114 TGAATGGGGCACTAAGAGAGTAA 58.899 43.478 0.00 0.00 35.64 2.24
66 67 3.706594 CTGAATGGGGCACTAAGAGAGTA 59.293 47.826 0.00 0.00 35.64 2.59
67 68 2.503356 CTGAATGGGGCACTAAGAGAGT 59.497 50.000 0.00 0.00 39.82 3.24
68 69 2.768527 TCTGAATGGGGCACTAAGAGAG 59.231 50.000 0.00 0.00 0.00 3.20
69 70 2.832838 TCTGAATGGGGCACTAAGAGA 58.167 47.619 0.00 0.00 0.00 3.10
70 71 3.135348 TCATCTGAATGGGGCACTAAGAG 59.865 47.826 0.00 0.00 33.42 2.85
71 72 3.114606 TCATCTGAATGGGGCACTAAGA 58.885 45.455 0.00 0.00 33.42 2.10
72 73 3.565764 TCATCTGAATGGGGCACTAAG 57.434 47.619 0.00 0.00 33.42 2.18
73 74 4.314522 TTTCATCTGAATGGGGCACTAA 57.685 40.909 0.00 0.00 33.54 2.24
74 75 4.016444 GTTTTCATCTGAATGGGGCACTA 58.984 43.478 0.00 0.00 33.54 2.74
75 76 2.827921 GTTTTCATCTGAATGGGGCACT 59.172 45.455 0.00 0.00 33.54 4.40
76 77 2.827921 AGTTTTCATCTGAATGGGGCAC 59.172 45.455 0.00 0.00 33.54 5.01
77 78 2.827322 CAGTTTTCATCTGAATGGGGCA 59.173 45.455 0.00 0.00 35.20 5.36
78 79 2.167075 CCAGTTTTCATCTGAATGGGGC 59.833 50.000 3.97 0.00 35.20 5.80
541 580 3.501950 GCCCAAAACTCTATTCAAAGCG 58.498 45.455 0.00 0.00 0.00 4.68
690 729 1.135286 GGTGCAAGCCAAGATAGCAAC 60.135 52.381 0.00 0.00 36.91 4.17
722 761 3.477530 GGATACCTGGCTAAATCACCAC 58.522 50.000 0.00 0.00 0.00 4.16
740 779 2.978824 CACAACCTCGACCCGGAT 59.021 61.111 0.73 0.00 0.00 4.18
749 794 3.412386 ACTAAATCCACTGCACAACCTC 58.588 45.455 0.00 0.00 0.00 3.85
752 797 4.065088 TCAGACTAAATCCACTGCACAAC 58.935 43.478 0.00 0.00 0.00 3.32
754 799 3.557054 GGTCAGACTAAATCCACTGCACA 60.557 47.826 0.00 0.00 0.00 4.57
807 880 6.461509 CCTTACAACAGCTCTCCACAAAATTT 60.462 38.462 0.00 0.00 0.00 1.82
829 902 8.080363 ACTATAACTAGACAAGCTAAAGCCTT 57.920 34.615 0.00 0.00 43.38 4.35
875 948 5.048846 ACTTACAGGTGACCAACTTTGAT 57.951 39.130 3.63 0.00 0.00 2.57
878 951 4.142249 GCAAACTTACAGGTGACCAACTTT 60.142 41.667 3.63 0.00 0.00 2.66
906 979 8.725405 TTGTCAGTAGATAATCCGCAAAATTA 57.275 30.769 0.00 0.00 0.00 1.40
936 1009 7.997482 GCAAGAAGATGCATATGATCCATATT 58.003 34.615 6.97 4.23 45.70 1.28
1013 1086 4.278310 AGCCACTGTAACCCATAAATTCC 58.722 43.478 0.00 0.00 0.00 3.01
1162 1235 9.739276 GTTCTTGGATTAATGGACATATGGATA 57.261 33.333 7.80 0.00 0.00 2.59
1178 1251 8.250143 ACAAAAATAGTGAAGGTTCTTGGATT 57.750 30.769 0.00 0.00 0.00 3.01
1284 1357 5.625311 CGAAAAGCATTAACTCCAACACTTC 59.375 40.000 0.00 0.00 0.00 3.01
1667 1741 6.528072 GCTAATTCAACAACAGTAGGCAAATC 59.472 38.462 0.00 0.00 0.00 2.17
1698 1772 3.964031 ACTTTCCCTGCGAGAGAGATAAT 59.036 43.478 0.00 0.00 0.00 1.28
1868 1943 1.067295 TGAAATCAGGGTGCAGTCCT 58.933 50.000 2.84 2.84 34.39 3.85
1872 1947 5.840243 TCATTAATGAAATCAGGGTGCAG 57.160 39.130 15.82 0.00 33.08 4.41
1912 1987 4.529716 TTTCCCTTCCAGTAAACCTTGT 57.470 40.909 0.00 0.00 0.00 3.16
1925 2000 9.196552 GCTGCATAACAATATTATTTTCCCTTC 57.803 33.333 0.00 0.00 0.00 3.46
1938 2013 6.592994 GCTATCTGATGAGCTGCATAACAATA 59.407 38.462 1.02 0.00 37.34 1.90
1997 2072 7.147514 GGCTCTGATGGATATGAAGGATCTATT 60.148 40.741 0.00 0.00 0.00 1.73
2008 2083 2.263545 TCTGGGGCTCTGATGGATATG 58.736 52.381 0.00 0.00 0.00 1.78
2051 2147 0.886490 AAACTCTGTCGCAGGCCAAG 60.886 55.000 5.01 0.00 31.51 3.61
2054 2150 0.674895 ATCAAACTCTGTCGCAGGCC 60.675 55.000 0.00 0.00 31.51 5.19
2055 2151 1.160137 AATCAAACTCTGTCGCAGGC 58.840 50.000 6.95 0.00 31.51 4.85
2056 2152 3.369147 CAGTAATCAAACTCTGTCGCAGG 59.631 47.826 6.95 1.86 31.51 4.85
2057 2153 4.237724 TCAGTAATCAAACTCTGTCGCAG 58.762 43.478 1.02 1.02 0.00 5.18
2058 2154 4.022329 TCTCAGTAATCAAACTCTGTCGCA 60.022 41.667 0.00 0.00 0.00 5.10
2059 2155 4.486090 TCTCAGTAATCAAACTCTGTCGC 58.514 43.478 0.00 0.00 0.00 5.19
2060 2156 7.476667 AGTATCTCAGTAATCAAACTCTGTCG 58.523 38.462 0.00 0.00 0.00 4.35
2061 2157 9.646427 AAAGTATCTCAGTAATCAAACTCTGTC 57.354 33.333 0.00 0.00 0.00 3.51
2067 2163 9.548208 GCAGAAAAAGTATCTCAGTAATCAAAC 57.452 33.333 0.00 0.00 0.00 2.93
2068 2164 9.283768 TGCAGAAAAAGTATCTCAGTAATCAAA 57.716 29.630 0.00 0.00 0.00 2.69
2069 2165 8.846943 TGCAGAAAAAGTATCTCAGTAATCAA 57.153 30.769 0.00 0.00 0.00 2.57
2070 2166 8.097038 ACTGCAGAAAAAGTATCTCAGTAATCA 58.903 33.333 23.35 0.00 35.48 2.57
2071 2167 8.485976 ACTGCAGAAAAAGTATCTCAGTAATC 57.514 34.615 23.35 0.00 35.48 1.75
2072 2168 9.944376 TTACTGCAGAAAAAGTATCTCAGTAAT 57.056 29.630 23.35 0.00 39.39 1.89
2073 2169 9.424319 CTTACTGCAGAAAAAGTATCTCAGTAA 57.576 33.333 23.35 17.46 40.39 2.24
2074 2170 7.545965 GCTTACTGCAGAAAAAGTATCTCAGTA 59.454 37.037 23.35 0.00 42.31 2.74
2272 2370 9.561069 AAAAGAGTTGAGCTACTTTATGAAGAA 57.439 29.630 3.94 0.00 36.69 2.52
2328 2426 5.539574 CAGGGCCATTCCAATTTATATGACA 59.460 40.000 6.18 0.00 36.21 3.58
2348 2446 2.112380 TGTGATATGTGCACACAGGG 57.888 50.000 24.37 0.00 45.48 4.45
2365 2463 2.320587 GCAGCTAGCGCTTGTGTGT 61.321 57.895 18.68 0.00 46.47 3.72
2458 2556 5.958380 ACTACATTGTAGAGGTCCATTCAGA 59.042 40.000 26.58 0.00 0.00 3.27
2462 2567 6.156949 ACATGACTACATTGTAGAGGTCCATT 59.843 38.462 26.58 5.12 34.15 3.16
2464 2569 5.023452 ACATGACTACATTGTAGAGGTCCA 58.977 41.667 26.58 16.10 34.15 4.02
2593 2698 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2594 2699 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2595 2700 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
2596 2701 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
2597 2702 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
2598 2703 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
2630 2735 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2631 2736 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2646 2751 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2647 2752 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2648 2753 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2649 2754 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2650 2755 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2660 2765 9.979897 TGTATAAAGTACTCCCTCTGTAAACTA 57.020 33.333 0.00 0.00 0.00 2.24
2661 2766 8.890410 TGTATAAAGTACTCCCTCTGTAAACT 57.110 34.615 0.00 0.00 0.00 2.66
2662 2767 8.747471 ACTGTATAAAGTACTCCCTCTGTAAAC 58.253 37.037 0.00 0.00 0.00 2.01
2663 2768 8.890410 ACTGTATAAAGTACTCCCTCTGTAAA 57.110 34.615 0.00 0.00 0.00 2.01
2666 2771 9.571816 GTATACTGTATAAAGTACTCCCTCTGT 57.428 37.037 4.84 0.18 35.53 3.41
2667 2772 9.796180 AGTATACTGTATAAAGTACTCCCTCTG 57.204 37.037 4.10 0.00 35.53 3.35
2707 2812 5.532779 CCTCCTAAAAGCAAGAAACAGAAGT 59.467 40.000 0.00 0.00 0.00 3.01
2774 2879 4.096231 CGGCCAGAAATATTCACAATGACA 59.904 41.667 2.24 0.00 0.00 3.58
3045 3150 5.215160 CACTACCAGAATCAGCACAAAAAC 58.785 41.667 0.00 0.00 0.00 2.43
3046 3151 4.887071 ACACTACCAGAATCAGCACAAAAA 59.113 37.500 0.00 0.00 0.00 1.94
3128 3233 4.753516 TGTAAGTCATCCCATACCACAG 57.246 45.455 0.00 0.00 0.00 3.66
3173 3278 8.989980 AGCTTACAAATAACTGACTAAACTGTC 58.010 33.333 0.00 0.00 37.47 3.51
3178 3283 8.597662 ACGAAGCTTACAAATAACTGACTAAA 57.402 30.769 0.00 0.00 0.00 1.85
3202 3307 4.757149 GCCTATGGTTGACATAAGGATGAC 59.243 45.833 0.00 0.00 41.33 3.06
3261 3367 8.853345 CAGTTACAATATTTTGCACATTCAGTC 58.147 33.333 0.00 0.00 36.22 3.51
3262 3368 8.575589 TCAGTTACAATATTTTGCACATTCAGT 58.424 29.630 0.00 0.00 36.22 3.41
3263 3369 8.969121 TCAGTTACAATATTTTGCACATTCAG 57.031 30.769 0.00 0.00 36.22 3.02
3264 3370 9.755804 TTTCAGTTACAATATTTTGCACATTCA 57.244 25.926 0.00 0.00 36.22 2.57
3266 3372 9.979578 TCTTTCAGTTACAATATTTTGCACATT 57.020 25.926 0.00 0.00 36.22 2.71
3268 3374 9.979578 AATCTTTCAGTTACAATATTTTGCACA 57.020 25.926 0.00 0.00 36.22 4.57
3299 3405 1.542915 CACTGGGGCTGTCATTTTCAG 59.457 52.381 0.00 0.00 36.18 3.02
3351 3457 2.762327 CCCTGCACAAAGGCATAGAAAT 59.238 45.455 0.00 0.00 43.97 2.17
3354 3460 0.991146 TCCCTGCACAAAGGCATAGA 59.009 50.000 0.00 0.00 43.97 1.98
3420 3526 2.298610 CTCGATAGCAGGGTGTCAGTA 58.701 52.381 0.00 0.00 0.00 2.74
3435 3541 1.005630 GCTTATGGAGCGGCTCGAT 60.006 57.895 26.80 26.80 42.46 3.59
3501 3607 5.452078 TTCTCAATGATTGGGTTGTTCAC 57.548 39.130 4.77 0.00 31.46 3.18
3531 3637 0.460987 GAGAACCCTGCAGATCGGTG 60.461 60.000 17.39 0.00 0.00 4.94
3837 3943 5.762711 TCTTACTGAAATTAGTGCAGCACAA 59.237 36.000 27.35 18.38 36.74 3.33
3960 4076 7.912250 CCTTAGCAATCAATTTCACATGACTAC 59.088 37.037 0.00 0.00 0.00 2.73
3964 4080 6.433716 TCACCTTAGCAATCAATTTCACATGA 59.566 34.615 0.00 0.00 0.00 3.07
3967 4083 6.647334 TTCACCTTAGCAATCAATTTCACA 57.353 33.333 0.00 0.00 0.00 3.58
3975 4091 2.489329 GCTGCTTTCACCTTAGCAATCA 59.511 45.455 0.00 0.00 45.89 2.57
3979 4095 1.202806 AGTGCTGCTTTCACCTTAGCA 60.203 47.619 0.00 0.00 44.58 3.49
3983 4099 1.952296 CTTCAGTGCTGCTTTCACCTT 59.048 47.619 0.00 0.00 35.14 3.50
4031 4149 6.425114 CCCTACAGCACACATATTAGATGAAC 59.575 42.308 0.00 0.00 0.00 3.18
4033 4151 5.602561 ACCCTACAGCACACATATTAGATGA 59.397 40.000 0.00 0.00 0.00 2.92
4048 4166 0.890683 AAATGCAGCAACCCTACAGC 59.109 50.000 0.00 0.00 0.00 4.40
4109 4227 6.239008 CCGGAGTTTATTGATAATGCCAATGT 60.239 38.462 0.00 0.00 35.94 2.71
4138 4256 1.771854 TGTCAGGTCCCTGCTTTGTTA 59.228 47.619 8.53 0.00 43.31 2.41
4165 4283 0.443869 CGAGGGTTGCAAGTTCATCG 59.556 55.000 13.94 13.94 0.00 3.84
4186 4304 6.595716 GTGCAGAAGAAAAAGAGAGCCTATTA 59.404 38.462 0.00 0.00 0.00 0.98
4222 4340 1.672356 CCCTTGGTTCGTCCTGCAG 60.672 63.158 6.78 6.78 37.07 4.41
4267 4385 9.915629 TTACTAGAAGTTCTTCAGATGAAAGTC 57.084 33.333 11.40 2.28 33.07 3.01
4272 4390 9.303116 AGTCTTTACTAGAAGTTCTTCAGATGA 57.697 33.333 11.40 1.43 33.81 2.92
4281 4399 9.757227 ATGCATCATAGTCTTTACTAGAAGTTC 57.243 33.333 0.00 0.00 41.46 3.01
4322 4440 9.621629 TGTCTCATAACCTTTTCAGTCTTTTTA 57.378 29.630 0.00 0.00 0.00 1.52
4325 4443 7.939039 TCATGTCTCATAACCTTTTCAGTCTTT 59.061 33.333 0.00 0.00 0.00 2.52
4326 4444 7.453393 TCATGTCTCATAACCTTTTCAGTCTT 58.547 34.615 0.00 0.00 0.00 3.01
4328 4446 7.672983 TTCATGTCTCATAACCTTTTCAGTC 57.327 36.000 0.00 0.00 0.00 3.51
4330 4448 9.166173 TGTATTCATGTCTCATAACCTTTTCAG 57.834 33.333 0.00 0.00 0.00 3.02
4331 4449 9.685276 ATGTATTCATGTCTCATAACCTTTTCA 57.315 29.630 0.00 0.00 32.51 2.69
4332 4450 9.941664 CATGTATTCATGTCTCATAACCTTTTC 57.058 33.333 4.25 0.00 44.37 2.29
4410 4528 2.053627 GAATGCGACAACAGGCAAAAG 58.946 47.619 0.00 0.00 43.26 2.27
4417 4535 4.472691 TTCAGAAAGAATGCGACAACAG 57.527 40.909 0.00 0.00 0.00 3.16
4422 4540 6.857964 TCTTCAAAATTCAGAAAGAATGCGAC 59.142 34.615 0.00 0.00 46.09 5.19
4449 4567 7.232534 TGCAAGATAAGTTTTGTCCCAGTTTAT 59.767 33.333 0.00 0.00 0.00 1.40
4451 4569 5.362430 TGCAAGATAAGTTTTGTCCCAGTTT 59.638 36.000 0.00 0.00 0.00 2.66
4452 4570 4.892934 TGCAAGATAAGTTTTGTCCCAGTT 59.107 37.500 0.00 0.00 0.00 3.16
4453 4571 4.469657 TGCAAGATAAGTTTTGTCCCAGT 58.530 39.130 0.00 0.00 0.00 4.00
4454 4572 5.416952 AGATGCAAGATAAGTTTTGTCCCAG 59.583 40.000 0.00 0.00 0.00 4.45
4455 4573 5.324409 AGATGCAAGATAAGTTTTGTCCCA 58.676 37.500 0.00 0.00 0.00 4.37
4456 4574 5.415701 TGAGATGCAAGATAAGTTTTGTCCC 59.584 40.000 0.00 0.00 0.00 4.46
4471 4621 7.170965 AGTTTCTTTTCCTCTATGAGATGCAA 58.829 34.615 0.00 0.00 0.00 4.08
4496 4646 4.141711 GGGTGATACAAGTCATCTGGCTTA 60.142 45.833 0.00 0.00 38.00 3.09
4500 4650 3.198635 AGTGGGTGATACAAGTCATCTGG 59.801 47.826 0.00 0.00 29.93 3.86
4553 4704 7.548780 TCTTTTGGTCCTGATTTTTGAGTTTTG 59.451 33.333 0.00 0.00 0.00 2.44
4554 4705 7.619965 TCTTTTGGTCCTGATTTTTGAGTTTT 58.380 30.769 0.00 0.00 0.00 2.43
4555 4706 7.181569 TCTTTTGGTCCTGATTTTTGAGTTT 57.818 32.000 0.00 0.00 0.00 2.66
4556 4707 6.790232 TCTTTTGGTCCTGATTTTTGAGTT 57.210 33.333 0.00 0.00 0.00 3.01
4557 4708 6.406961 GGTTCTTTTGGTCCTGATTTTTGAGT 60.407 38.462 0.00 0.00 0.00 3.41
4558 4709 5.985530 GGTTCTTTTGGTCCTGATTTTTGAG 59.014 40.000 0.00 0.00 0.00 3.02
4559 4710 5.660864 AGGTTCTTTTGGTCCTGATTTTTGA 59.339 36.000 0.00 0.00 0.00 2.69
4566 4717 6.266786 GGATTTTTAGGTTCTTTTGGTCCTGA 59.733 38.462 0.00 0.00 0.00 3.86
4574 4725 6.463331 GGGTTTCCGGATTTTTAGGTTCTTTT 60.463 38.462 4.15 0.00 0.00 2.27
4582 4733 9.524106 GTTAATAATGGGTTTCCGGATTTTTAG 57.476 33.333 4.15 0.00 35.24 1.85
4584 4735 8.038351 CAGTTAATAATGGGTTTCCGGATTTTT 58.962 33.333 4.15 0.00 35.24 1.94
4585 4736 7.397761 TCAGTTAATAATGGGTTTCCGGATTTT 59.602 33.333 4.15 0.00 35.24 1.82
4588 4739 6.008696 TCAGTTAATAATGGGTTTCCGGAT 57.991 37.500 4.15 0.00 35.24 4.18
4592 4743 9.274206 GTCTCTATCAGTTAATAATGGGTTTCC 57.726 37.037 0.00 0.00 0.00 3.13
4612 4763 6.889198 AGATTTCGGAATCATTTGGTCTCTA 58.111 36.000 18.62 0.00 43.35 2.43
4613 4764 5.749462 AGATTTCGGAATCATTTGGTCTCT 58.251 37.500 18.62 0.00 43.35 3.10
4614 4765 6.986817 TCTAGATTTCGGAATCATTTGGTCTC 59.013 38.462 18.62 0.00 43.35 3.36
4615 4766 6.763610 GTCTAGATTTCGGAATCATTTGGTCT 59.236 38.462 18.62 0.00 43.35 3.85
4616 4767 6.292381 CGTCTAGATTTCGGAATCATTTGGTC 60.292 42.308 18.62 0.00 43.35 4.02
4617 4768 5.523916 CGTCTAGATTTCGGAATCATTTGGT 59.476 40.000 18.62 0.00 43.35 3.67
4622 4773 7.040473 AGTAACGTCTAGATTTCGGAATCAT 57.960 36.000 18.62 6.44 43.35 2.45
4627 4778 6.095377 GGAAAAGTAACGTCTAGATTTCGGA 58.905 40.000 0.00 0.00 0.00 4.55
4628 4779 5.865552 TGGAAAAGTAACGTCTAGATTTCGG 59.134 40.000 0.00 0.00 0.00 4.30
4631 4782 8.101419 AGGAATGGAAAAGTAACGTCTAGATTT 58.899 33.333 0.00 0.00 0.00 2.17
4636 4787 6.209986 TGAGAGGAATGGAAAAGTAACGTCTA 59.790 38.462 0.00 0.00 0.00 2.59
4644 4795 4.702131 CCGAATTGAGAGGAATGGAAAAGT 59.298 41.667 0.00 0.00 0.00 2.66
4645 4796 4.943705 TCCGAATTGAGAGGAATGGAAAAG 59.056 41.667 0.00 0.00 0.00 2.27
4646 4797 4.917385 TCCGAATTGAGAGGAATGGAAAA 58.083 39.130 0.00 0.00 0.00 2.29
4647 4798 4.568072 TCCGAATTGAGAGGAATGGAAA 57.432 40.909 0.00 0.00 0.00 3.13
4648 4799 4.454678 CATCCGAATTGAGAGGAATGGAA 58.545 43.478 0.00 0.00 37.62 3.53
4649 4800 3.181451 CCATCCGAATTGAGAGGAATGGA 60.181 47.826 0.00 0.00 37.62 3.41
4650 4801 3.144506 CCATCCGAATTGAGAGGAATGG 58.855 50.000 0.00 0.00 37.62 3.16
4651 4802 4.077300 TCCATCCGAATTGAGAGGAATG 57.923 45.455 0.00 0.00 37.62 2.67
4652 4803 4.989875 ATCCATCCGAATTGAGAGGAAT 57.010 40.909 0.00 0.00 37.62 3.01
4653 4804 5.147767 TCTATCCATCCGAATTGAGAGGAA 58.852 41.667 0.00 0.00 37.62 3.36
4654 4805 4.740902 TCTATCCATCCGAATTGAGAGGA 58.259 43.478 0.00 0.00 38.56 3.71
4655 4806 5.186603 TCATCTATCCATCCGAATTGAGAGG 59.813 44.000 0.00 0.00 0.00 3.69
4656 4807 6.098679 GTCATCTATCCATCCGAATTGAGAG 58.901 44.000 0.00 0.00 0.00 3.20
4657 4808 5.539955 TGTCATCTATCCATCCGAATTGAGA 59.460 40.000 0.00 0.00 0.00 3.27
4658 4809 5.636965 GTGTCATCTATCCATCCGAATTGAG 59.363 44.000 0.00 0.00 0.00 3.02
4659 4810 5.305386 AGTGTCATCTATCCATCCGAATTGA 59.695 40.000 0.00 0.00 0.00 2.57
4660 4811 5.545588 AGTGTCATCTATCCATCCGAATTG 58.454 41.667 0.00 0.00 0.00 2.32
4661 4812 5.305386 TGAGTGTCATCTATCCATCCGAATT 59.695 40.000 0.00 0.00 0.00 2.17
4662 4813 4.835056 TGAGTGTCATCTATCCATCCGAAT 59.165 41.667 0.00 0.00 0.00 3.34
4663 4814 4.215109 TGAGTGTCATCTATCCATCCGAA 58.785 43.478 0.00 0.00 0.00 4.30
4664 4815 3.832527 TGAGTGTCATCTATCCATCCGA 58.167 45.455 0.00 0.00 0.00 4.55
4665 4816 4.590850 TTGAGTGTCATCTATCCATCCG 57.409 45.455 0.00 0.00 0.00 4.18
4666 4817 6.261826 CCTTTTTGAGTGTCATCTATCCATCC 59.738 42.308 0.00 0.00 0.00 3.51
4667 4818 6.238593 GCCTTTTTGAGTGTCATCTATCCATC 60.239 42.308 0.00 0.00 0.00 3.51
4668 4819 5.591877 GCCTTTTTGAGTGTCATCTATCCAT 59.408 40.000 0.00 0.00 0.00 3.41
4669 4820 4.943705 GCCTTTTTGAGTGTCATCTATCCA 59.056 41.667 0.00 0.00 0.00 3.41
4670 4821 4.034510 CGCCTTTTTGAGTGTCATCTATCC 59.965 45.833 0.00 0.00 0.00 2.59
4671 4822 4.494855 GCGCCTTTTTGAGTGTCATCTATC 60.495 45.833 0.00 0.00 0.00 2.08
4672 4823 3.375299 GCGCCTTTTTGAGTGTCATCTAT 59.625 43.478 0.00 0.00 0.00 1.98
4673 4824 2.742053 GCGCCTTTTTGAGTGTCATCTA 59.258 45.455 0.00 0.00 0.00 1.98
4674 4825 1.537202 GCGCCTTTTTGAGTGTCATCT 59.463 47.619 0.00 0.00 0.00 2.90
4675 4826 1.266718 TGCGCCTTTTTGAGTGTCATC 59.733 47.619 4.18 0.00 0.00 2.92
4676 4827 1.317613 TGCGCCTTTTTGAGTGTCAT 58.682 45.000 4.18 0.00 0.00 3.06
4677 4828 1.065401 CTTGCGCCTTTTTGAGTGTCA 59.935 47.619 4.18 0.00 0.00 3.58
4678 4829 1.758783 CTTGCGCCTTTTTGAGTGTC 58.241 50.000 4.18 0.00 0.00 3.67
4679 4830 0.249031 GCTTGCGCCTTTTTGAGTGT 60.249 50.000 4.18 0.00 0.00 3.55
4680 4831 0.248990 TGCTTGCGCCTTTTTGAGTG 60.249 50.000 4.18 0.00 34.43 3.51
4703 4854 3.797039 TCCGTTATGAAGGAGCTGATTG 58.203 45.455 0.00 0.00 31.95 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.