Multiple sequence alignment - TraesCS1B01G375300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G375300 chr1B 100.000 9445 0 0 1 9445 606321005 606311561 0.000000e+00 17442.0
1 TraesCS1B01G375300 chr1B 87.755 98 10 2 1686 1783 439444815 439444720 7.750000e-21 113.0
2 TraesCS1B01G375300 chr1D 92.574 3003 117 40 5844 8799 445192791 445189848 0.000000e+00 4213.0
3 TraesCS1B01G375300 chr1D 95.665 1661 57 8 1905 3556 445196602 445194948 0.000000e+00 2654.0
4 TraesCS1B01G375300 chr1D 94.561 1287 59 8 4434 5716 445194133 445192854 0.000000e+00 1978.0
5 TraesCS1B01G375300 chr1D 86.436 693 48 17 870 1531 445197725 445197048 0.000000e+00 717.0
6 TraesCS1B01G375300 chr1D 93.750 288 11 3 3839 4119 445194728 445194441 8.770000e-115 425.0
7 TraesCS1B01G375300 chr1D 94.915 177 9 0 1730 1906 445196817 445196641 2.600000e-70 278.0
8 TraesCS1B01G375300 chr1D 93.233 133 9 0 1559 1691 445196937 445196805 7.480000e-46 196.0
9 TraesCS1B01G375300 chr1D 95.960 99 4 0 5753 5851 197821560 197821658 2.730000e-35 161.0
10 TraesCS1B01G375300 chr1D 81.308 214 11 12 644 834 445198012 445197805 7.640000e-31 147.0
11 TraesCS1B01G375300 chr1D 92.308 52 4 0 5711 5762 445192841 445192790 3.660000e-09 75.0
12 TraesCS1B01G375300 chr1A 93.071 2670 102 30 5843 8474 540405289 540402665 0.000000e+00 3829.0
13 TraesCS1B01G375300 chr1A 94.813 1581 77 5 4142 5719 540406923 540405345 0.000000e+00 2460.0
14 TraesCS1B01G375300 chr1A 93.696 1618 68 16 1905 3505 540408918 540407318 0.000000e+00 2392.0
15 TraesCS1B01G375300 chr1A 85.541 1155 85 23 769 1896 540410057 540408958 0.000000e+00 1133.0
16 TraesCS1B01G375300 chr1A 93.416 562 31 5 1 559 551872594 551872036 0.000000e+00 828.0
17 TraesCS1B01G375300 chr1A 93.333 330 19 3 231 559 33962014 33961687 1.430000e-132 484.0
18 TraesCS1B01G375300 chr1A 94.098 305 10 5 3839 4136 540407196 540406893 3.110000e-124 457.0
19 TraesCS1B01G375300 chr1A 84.354 294 31 6 8461 8751 540402650 540402369 3.360000e-69 274.0
20 TraesCS1B01G375300 chr1A 94.030 134 7 1 3549 3681 540407319 540407186 1.610000e-47 202.0
21 TraesCS1B01G375300 chr1A 90.769 130 7 4 643 770 540410217 540410091 1.630000e-37 169.0
22 TraesCS1B01G375300 chr6B 94.487 653 34 1 8795 9445 334911506 334910854 0.000000e+00 1005.0
23 TraesCS1B01G375300 chr6B 93.594 562 29 6 1 559 42400997 42401554 0.000000e+00 832.0
24 TraesCS1B01G375300 chr6B 81.905 210 31 7 9240 9445 48106629 48106835 4.540000e-38 171.0
25 TraesCS1B01G375300 chr7B 93.837 649 25 6 8799 9445 728446132 728445497 0.000000e+00 963.0
26 TraesCS1B01G375300 chr7B 88.341 223 22 3 8989 9211 651187218 651187000 2.020000e-66 265.0
27 TraesCS1B01G375300 chr7B 86.638 232 27 2 8986 9215 611609046 611608817 4.380000e-63 254.0
28 TraesCS1B01G375300 chr7B 85.333 225 32 1 9222 9445 651186633 651186409 2.050000e-56 231.0
29 TraesCS1B01G375300 chr7B 86.420 162 8 8 3682 3841 218816917 218816768 2.110000e-36 165.0
30 TraesCS1B01G375300 chr7B 90.517 116 7 3 5761 5873 84246141 84246255 5.910000e-32 150.0
31 TraesCS1B01G375300 chr7B 80.172 232 20 5 8986 9215 680543173 680542966 5.910000e-32 150.0
32 TraesCS1B01G375300 chr7B 85.294 102 13 2 1687 1787 482484948 482485048 4.670000e-18 104.0
33 TraesCS1B01G375300 chr5D 93.056 648 29 10 8799 9445 531289562 531288930 0.000000e+00 933.0
34 TraesCS1B01G375300 chr5D 84.337 166 18 4 3682 3841 325957636 325957473 1.270000e-33 156.0
35 TraesCS1B01G375300 chr5D 84.559 136 13 4 3709 3838 213480673 213480806 2.770000e-25 128.0
36 TraesCS1B01G375300 chr3B 95.429 525 22 2 1 525 754265560 754265038 0.000000e+00 835.0
37 TraesCS1B01G375300 chr3B 86.667 690 57 15 953 1613 787284050 787284733 0.000000e+00 732.0
38 TraesCS1B01G375300 chr3B 81.268 694 63 26 950 1613 316008604 316009260 5.090000e-137 499.0
39 TraesCS1B01G375300 chr3B 97.917 96 1 1 5757 5851 492229992 492230087 2.110000e-36 165.0
40 TraesCS1B01G375300 chr7A 93.416 562 30 6 1 559 101226540 101225983 0.000000e+00 826.0
41 TraesCS1B01G375300 chr7A 92.376 564 34 7 1 559 116773328 116773887 0.000000e+00 795.0
42 TraesCS1B01G375300 chr7A 81.979 283 40 8 1 276 609223572 609223294 7.380000e-56 230.0
43 TraesCS1B01G375300 chr7A 86.550 171 23 0 8795 8965 108223073 108223243 1.250000e-43 189.0
44 TraesCS1B01G375300 chr7A 89.655 87 8 1 1690 1776 190473065 190472980 1.000000e-19 110.0
45 TraesCS1B01G375300 chr4B 86.900 687 56 13 956 1613 519742027 519742708 0.000000e+00 739.0
46 TraesCS1B01G375300 chr4B 83.258 221 30 4 9221 9440 471651084 471651298 7.480000e-46 196.0
47 TraesCS1B01G375300 chr2B 86.212 689 61 13 953 1612 740290447 740291130 0.000000e+00 715.0
48 TraesCS1B01G375300 chr2B 85.955 178 24 1 8792 8968 138996022 138996199 1.250000e-43 189.0
49 TraesCS1B01G375300 chr2B 90.435 115 9 2 5761 5874 483512972 483512859 5.910000e-32 150.0
50 TraesCS1B01G375300 chrUn 96.226 371 11 3 6611 6979 480714659 480715028 1.050000e-168 604.0
51 TraesCS1B01G375300 chrUn 100.000 31 0 0 6993 7023 480715013 480715043 3.680000e-04 58.4
52 TraesCS1B01G375300 chr2A 86.268 568 47 10 1073 1613 82701999 82702562 1.060000e-163 588.0
53 TraesCS1B01G375300 chr2A 93.030 330 18 4 231 559 701494905 701494580 2.390000e-130 477.0
54 TraesCS1B01G375300 chr2A 91.515 330 24 4 231 559 758496040 758495714 1.450000e-122 451.0
55 TraesCS1B01G375300 chr2A 85.538 325 46 1 8801 9124 187307751 187308075 1.170000e-88 339.0
56 TraesCS1B01G375300 chr2D 96.610 354 11 1 9093 9445 589476904 589476551 3.800000e-163 586.0
57 TraesCS1B01G375300 chr2D 94.516 310 17 0 8792 9101 589482881 589482572 6.630000e-131 479.0
58 TraesCS1B01G375300 chr2D 96.939 98 2 1 5759 5855 15832006 15832103 7.590000e-36 163.0
59 TraesCS1B01G375300 chr2D 96.000 100 3 1 5753 5851 429432097 429432196 2.730000e-35 161.0
60 TraesCS1B01G375300 chr2D 88.235 136 7 5 3718 3847 220355096 220354964 4.570000e-33 154.0
61 TraesCS1B01G375300 chr7D 88.210 229 23 3 8986 9212 15631097 15631323 4.350000e-68 270.0
62 TraesCS1B01G375300 chr7D 82.686 283 38 8 1 276 40440124 40439846 3.410000e-59 241.0
63 TraesCS1B01G375300 chr7D 82.686 283 38 8 1 276 499528534 499528256 3.410000e-59 241.0
64 TraesCS1B01G375300 chr7D 88.043 92 10 1 1685 1776 151326534 151326444 3.610000e-19 108.0
65 TraesCS1B01G375300 chr5A 90.050 201 18 2 359 559 368129643 368129445 9.410000e-65 259.0
66 TraesCS1B01G375300 chr5A 85.526 152 13 6 3681 3830 657542821 657542965 5.910000e-32 150.0
67 TraesCS1B01G375300 chr3D 82.686 283 38 8 1 276 596637550 596637272 3.410000e-59 241.0
68 TraesCS1B01G375300 chr3D 93.578 109 5 2 5746 5853 81201020 81200913 2.730000e-35 161.0
69 TraesCS1B01G375300 chr3D 86.735 98 11 2 1690 1787 131489253 131489158 3.610000e-19 108.0
70 TraesCS1B01G375300 chr3D 86.869 99 8 3 1678 1776 370110117 370110024 1.300000e-18 106.0
71 TraesCS1B01G375300 chr4A 84.091 220 31 4 9229 9445 137536712 137536930 9.610000e-50 209.0
72 TraesCS1B01G375300 chr4A 85.027 187 24 4 8795 8979 558551516 558551332 4.500000e-43 187.0
73 TraesCS1B01G375300 chr4A 92.857 112 3 4 5745 5855 661959885 661959778 3.530000e-34 158.0
74 TraesCS1B01G375300 chr4D 87.209 172 21 1 8799 8969 215143956 215144127 2.690000e-45 195.0
75 TraesCS1B01G375300 chr5B 82.727 220 34 4 9229 9445 534857990 534858208 9.680000e-45 193.0
76 TraesCS1B01G375300 chr3A 88.050 159 18 1 9287 9445 120228602 120228445 4.500000e-43 187.0
77 TraesCS1B01G375300 chr3A 83.594 128 12 5 3709 3830 573979445 573979321 2.790000e-20 111.0
78 TraesCS1B01G375300 chr3A 100.000 32 0 0 565 596 496592630 496592661 1.020000e-04 60.2
79 TraesCS1B01G375300 chr6D 88.732 142 10 3 3677 3812 131679873 131679732 1.630000e-37 169.0
80 TraesCS1B01G375300 chr6D 97.727 88 2 0 5761 5848 462231840 462231753 1.640000e-32 152.0
81 TraesCS1B01G375300 chr6D 83.893 149 9 8 3709 3842 126435273 126435125 2.770000e-25 128.0
82 TraesCS1B01G375300 chr6D 83.636 110 11 3 1683 1786 309584492 309584384 7.810000e-16 97.1
83 TraesCS1B01G375300 chr6A 83.626 171 19 6 3681 3843 514023377 514023208 1.640000e-32 152.0
84 TraesCS1B01G375300 chr6A 88.636 88 9 1 1689 1776 604890664 604890750 1.300000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G375300 chr1B 606311561 606321005 9444 True 17442.0 17442 100.000000 1 9445 1 chr1B.!!$R2 9444
1 TraesCS1B01G375300 chr1D 445189848 445198012 8164 True 1187.0 4213 91.638889 644 8799 9 chr1D.!!$R1 8155
2 TraesCS1B01G375300 chr1A 540402369 540410217 7848 True 1364.5 3829 91.296500 643 8751 8 chr1A.!!$R3 8108
3 TraesCS1B01G375300 chr1A 551872036 551872594 558 True 828.0 828 93.416000 1 559 1 chr1A.!!$R2 558
4 TraesCS1B01G375300 chr6B 334910854 334911506 652 True 1005.0 1005 94.487000 8795 9445 1 chr6B.!!$R1 650
5 TraesCS1B01G375300 chr6B 42400997 42401554 557 False 832.0 832 93.594000 1 559 1 chr6B.!!$F1 558
6 TraesCS1B01G375300 chr7B 728445497 728446132 635 True 963.0 963 93.837000 8799 9445 1 chr7B.!!$R4 646
7 TraesCS1B01G375300 chr7B 651186409 651187218 809 True 248.0 265 86.837000 8989 9445 2 chr7B.!!$R5 456
8 TraesCS1B01G375300 chr5D 531288930 531289562 632 True 933.0 933 93.056000 8799 9445 1 chr5D.!!$R2 646
9 TraesCS1B01G375300 chr3B 754265038 754265560 522 True 835.0 835 95.429000 1 525 1 chr3B.!!$R1 524
10 TraesCS1B01G375300 chr3B 787284050 787284733 683 False 732.0 732 86.667000 953 1613 1 chr3B.!!$F3 660
11 TraesCS1B01G375300 chr3B 316008604 316009260 656 False 499.0 499 81.268000 950 1613 1 chr3B.!!$F1 663
12 TraesCS1B01G375300 chr7A 101225983 101226540 557 True 826.0 826 93.416000 1 559 1 chr7A.!!$R1 558
13 TraesCS1B01G375300 chr7A 116773328 116773887 559 False 795.0 795 92.376000 1 559 1 chr7A.!!$F2 558
14 TraesCS1B01G375300 chr4B 519742027 519742708 681 False 739.0 739 86.900000 956 1613 1 chr4B.!!$F2 657
15 TraesCS1B01G375300 chr2B 740290447 740291130 683 False 715.0 715 86.212000 953 1612 1 chr2B.!!$F2 659
16 TraesCS1B01G375300 chr2A 82701999 82702562 563 False 588.0 588 86.268000 1073 1613 1 chr2A.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 598 0.241481 TTTGCGGGTCGGTATTTTGC 59.759 50.000 0.00 0.00 0.00 3.68 F
1294 1392 0.736325 ACGTGCACTACTTCCGCATC 60.736 55.000 16.19 0.00 38.07 3.91 F
1450 1581 0.025513 CAGAGTATTTGCAGTCGCGC 59.974 55.000 0.00 0.00 42.97 6.86 F
1642 1876 0.109412 GTGACCTTGAGCTTGCATGC 60.109 55.000 16.37 16.37 0.00 4.06 F
2751 3034 0.253044 GCTCACCATAGAACCAGCCA 59.747 55.000 0.00 0.00 0.00 4.75 F
3737 4135 0.175073 GGGTAGCGACTCGGAAATGT 59.825 55.000 0.00 0.00 0.00 2.71 F
3826 4224 0.303796 TAGTCATGACTAGTCGCGCG 59.696 55.000 27.96 26.76 42.54 6.86 F
3827 4225 1.062047 GTCATGACTAGTCGCGCGA 59.938 57.895 31.40 31.40 0.00 5.87 F
3828 4226 1.062047 TCATGACTAGTCGCGCGAC 59.938 57.895 46.21 46.21 44.86 5.19 F
5431 5863 1.468506 TTGCCAGCTACACCACGAGA 61.469 55.000 0.00 0.00 0.00 4.04 F
6390 6842 0.454600 GTGGCATGCTCACTTGATGG 59.545 55.000 23.79 0.00 32.78 3.51 F
6722 7198 0.537143 AGACCGATTTGGCTTGTGCA 60.537 50.000 0.00 0.00 43.94 4.57 F
6727 7203 1.068402 CGATTTGGCTTGTGCATGTGA 60.068 47.619 0.00 0.00 41.91 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1444 1575 0.093705 GAACTGACAGAATGCGCGAC 59.906 55.000 12.10 0.88 42.53 5.19 R
2353 2627 2.139118 GCTAGAAAGCCTTATCAGCCG 58.861 52.381 0.00 0.00 43.40 5.52 R
3331 3622 1.351017 TCCACAAAGGGAACTGCTAGG 59.649 52.381 0.00 0.00 42.68 3.02 R
3561 3958 2.325583 AAGTGTCGACAAAAGGCAGA 57.674 45.000 21.95 0.00 0.00 4.26 R
3755 4153 0.025256 GAGTCACGAGTCGCGACTAG 59.975 60.000 39.33 38.13 46.78 2.57 R
5410 5841 1.005037 CGTGGTGTAGCTGGCAAGA 60.005 57.895 0.00 0.00 0.00 3.02 R
5504 5936 2.099141 GTGATTGCTACACCTGCTCA 57.901 50.000 0.00 0.00 32.84 4.26 R
5588 6020 5.284861 TCTTGGTTTACTGTAACTCTGCA 57.715 39.130 0.00 0.00 0.00 4.41 R
5763 6215 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20 R
6705 7181 0.244450 CATGCACAAGCCAAATCGGT 59.756 50.000 0.00 0.00 41.13 4.69 R
7999 8504 1.128809 TTACCGGCCAGAACCTTCCA 61.129 55.000 0.00 0.00 0.00 3.53 R
8361 8868 1.282930 GGACCGTGCAGTTCGAAGAC 61.283 60.000 0.00 0.00 34.32 3.01 R
8640 9175 1.283793 CCCACAAGCAACTTCGCAG 59.716 57.895 0.00 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 5.581126 AGAGAAAAGCATTGTCAAACACA 57.419 34.783 0.00 0.00 0.00 3.72
105 106 9.950680 AGTCCATGTTAATTCATTATTTAAGCG 57.049 29.630 0.00 0.00 0.00 4.68
137 138 7.496529 TTCTAGTTCTCCACTGAAATTGTTG 57.503 36.000 0.00 0.00 35.97 3.33
147 148 5.404946 CACTGAAATTGTTGATAAGGCTGG 58.595 41.667 0.00 0.00 0.00 4.85
187 188 3.074412 GGTCCAATTGACACTCACGATT 58.926 45.455 7.12 0.00 46.38 3.34
338 342 5.536260 ACGAGAGACTTACTTGGGTTAAAC 58.464 41.667 0.00 0.00 0.00 2.01
386 390 8.265165 AGTTCTCTTCCCGTGAAATTATTAAC 57.735 34.615 0.00 0.00 0.00 2.01
387 391 7.336176 AGTTCTCTTCCCGTGAAATTATTAACC 59.664 37.037 0.00 0.00 0.00 2.85
564 570 3.851128 GGCTCCGCCCCTCAGTAC 61.851 72.222 0.00 0.00 44.06 2.73
565 571 3.075005 GCTCCGCCCCTCAGTACA 61.075 66.667 0.00 0.00 0.00 2.90
566 572 2.656069 GCTCCGCCCCTCAGTACAA 61.656 63.158 0.00 0.00 0.00 2.41
567 573 1.980052 CTCCGCCCCTCAGTACAAA 59.020 57.895 0.00 0.00 0.00 2.83
568 574 0.391263 CTCCGCCCCTCAGTACAAAC 60.391 60.000 0.00 0.00 0.00 2.93
569 575 1.122632 TCCGCCCCTCAGTACAAACA 61.123 55.000 0.00 0.00 0.00 2.83
570 576 0.953960 CCGCCCCTCAGTACAAACAC 60.954 60.000 0.00 0.00 0.00 3.32
571 577 1.289109 CGCCCCTCAGTACAAACACG 61.289 60.000 0.00 0.00 0.00 4.49
572 578 0.250166 GCCCCTCAGTACAAACACGT 60.250 55.000 0.00 0.00 0.00 4.49
573 579 1.812708 GCCCCTCAGTACAAACACGTT 60.813 52.381 0.00 0.00 0.00 3.99
574 580 2.567985 CCCCTCAGTACAAACACGTTT 58.432 47.619 0.00 0.00 0.00 3.60
575 581 2.946990 CCCCTCAGTACAAACACGTTTT 59.053 45.455 0.00 0.00 0.00 2.43
576 582 3.242936 CCCCTCAGTACAAACACGTTTTG 60.243 47.826 16.48 16.48 35.64 2.44
577 583 3.359654 CCTCAGTACAAACACGTTTTGC 58.640 45.455 17.43 7.46 32.93 3.68
579 585 2.105659 CAGTACAAACACGTTTTGCGG 58.894 47.619 17.43 2.53 46.52 5.69
585 591 3.273834 CACGTTTTGCGGGTCGGT 61.274 61.111 0.00 0.00 46.52 4.69
586 592 1.955157 CACGTTTTGCGGGTCGGTA 60.955 57.895 0.00 0.00 46.52 4.02
587 593 1.004679 ACGTTTTGCGGGTCGGTAT 60.005 52.632 0.00 0.00 46.52 2.73
588 594 0.603439 ACGTTTTGCGGGTCGGTATT 60.603 50.000 0.00 0.00 46.52 1.89
589 595 0.518195 CGTTTTGCGGGTCGGTATTT 59.482 50.000 0.00 0.00 36.85 1.40
590 596 1.069091 CGTTTTGCGGGTCGGTATTTT 60.069 47.619 0.00 0.00 36.85 1.82
591 597 2.321263 GTTTTGCGGGTCGGTATTTTG 58.679 47.619 0.00 0.00 0.00 2.44
592 598 0.241481 TTTGCGGGTCGGTATTTTGC 59.759 50.000 0.00 0.00 0.00 3.68
593 599 1.913451 TTGCGGGTCGGTATTTTGCG 61.913 55.000 0.00 0.00 0.00 4.85
594 600 3.095032 CGGGTCGGTATTTTGCGG 58.905 61.111 0.00 0.00 0.00 5.69
595 601 2.466140 CGGGTCGGTATTTTGCGGG 61.466 63.158 0.00 0.00 0.00 6.13
596 602 2.767445 GGGTCGGTATTTTGCGGGC 61.767 63.158 0.00 0.00 0.00 6.13
597 603 1.747745 GGTCGGTATTTTGCGGGCT 60.748 57.895 0.00 0.00 0.00 5.19
598 604 1.712018 GGTCGGTATTTTGCGGGCTC 61.712 60.000 0.00 0.00 0.00 4.70
599 605 1.450669 TCGGTATTTTGCGGGCTCC 60.451 57.895 0.00 0.00 0.00 4.70
612 618 4.319133 GCTCCGAGCCAAATTGGA 57.681 55.556 17.47 0.00 40.96 3.53
613 619 2.799176 GCTCCGAGCCAAATTGGAT 58.201 52.632 17.47 10.02 39.95 3.41
614 620 1.106285 GCTCCGAGCCAAATTGGATT 58.894 50.000 17.47 2.34 35.51 3.01
615 621 1.478105 GCTCCGAGCCAAATTGGATTT 59.522 47.619 17.47 0.00 35.51 2.17
616 622 2.480244 GCTCCGAGCCAAATTGGATTTC 60.480 50.000 17.47 8.67 35.51 2.17
617 623 2.099405 TCCGAGCCAAATTGGATTTCC 58.901 47.619 17.47 0.00 35.51 3.13
618 624 1.202290 CCGAGCCAAATTGGATTTCCG 60.202 52.381 17.47 9.50 35.51 4.30
619 625 1.202290 CGAGCCAAATTGGATTTCCGG 60.202 52.381 17.47 0.00 35.51 5.14
620 626 1.824852 GAGCCAAATTGGATTTCCGGT 59.175 47.619 17.47 0.00 35.51 5.28
621 627 2.233676 GAGCCAAATTGGATTTCCGGTT 59.766 45.455 17.47 0.00 35.51 4.44
622 628 2.637382 AGCCAAATTGGATTTCCGGTTT 59.363 40.909 17.47 0.00 40.96 3.27
623 629 3.835395 AGCCAAATTGGATTTCCGGTTTA 59.165 39.130 17.47 0.00 40.96 2.01
624 630 4.469586 AGCCAAATTGGATTTCCGGTTTAT 59.530 37.500 17.47 0.00 40.96 1.40
625 631 4.808895 GCCAAATTGGATTTCCGGTTTATC 59.191 41.667 17.47 2.98 40.96 1.75
626 632 5.625656 GCCAAATTGGATTTCCGGTTTATCA 60.626 40.000 17.47 0.00 40.96 2.15
627 633 5.810074 CCAAATTGGATTTCCGGTTTATCAC 59.190 40.000 6.04 0.00 40.96 3.06
628 634 4.893424 ATTGGATTTCCGGTTTATCACG 57.107 40.909 0.00 0.00 39.43 4.35
633 639 4.924019 CCGGTTTATCACGGCTCA 57.076 55.556 0.00 0.00 43.96 4.26
634 640 3.379650 CCGGTTTATCACGGCTCAT 57.620 52.632 0.00 0.00 43.96 2.90
635 641 2.519377 CCGGTTTATCACGGCTCATA 57.481 50.000 0.00 0.00 43.96 2.15
636 642 2.404215 CCGGTTTATCACGGCTCATAG 58.596 52.381 0.00 0.00 43.96 2.23
637 643 2.223971 CCGGTTTATCACGGCTCATAGT 60.224 50.000 0.00 0.00 43.96 2.12
638 644 3.454375 CGGTTTATCACGGCTCATAGTT 58.546 45.455 0.00 0.00 0.00 2.24
639 645 3.489785 CGGTTTATCACGGCTCATAGTTC 59.510 47.826 0.00 0.00 0.00 3.01
640 646 4.439057 GGTTTATCACGGCTCATAGTTCA 58.561 43.478 0.00 0.00 0.00 3.18
641 647 4.508124 GGTTTATCACGGCTCATAGTTCAG 59.492 45.833 0.00 0.00 0.00 3.02
642 648 5.109903 GTTTATCACGGCTCATAGTTCAGT 58.890 41.667 0.00 0.00 0.00 3.41
643 649 6.270815 GTTTATCACGGCTCATAGTTCAGTA 58.729 40.000 0.00 0.00 0.00 2.74
644 650 6.459670 TTATCACGGCTCATAGTTCAGTAA 57.540 37.500 0.00 0.00 0.00 2.24
645 651 4.794278 TCACGGCTCATAGTTCAGTAAA 57.206 40.909 0.00 0.00 0.00 2.01
646 652 4.744570 TCACGGCTCATAGTTCAGTAAAG 58.255 43.478 0.00 0.00 0.00 1.85
675 689 1.260198 GCCGTCACGTCGTCGATATG 61.260 60.000 9.47 0.00 40.62 1.78
677 691 1.260198 CGTCACGTCGTCGATATGCC 61.260 60.000 9.47 0.00 40.62 4.40
695 709 7.590322 CGATATGCCAAAGAATCTGAAAATCTG 59.410 37.037 0.00 0.00 0.00 2.90
724 738 1.304381 GCATCTCCCACCAGGCAAA 60.304 57.895 0.00 0.00 34.51 3.68
732 746 1.172180 CCACCAGGCAAACGACACAT 61.172 55.000 0.00 0.00 0.00 3.21
741 755 2.375110 CAAACGACACATCACAACAGC 58.625 47.619 0.00 0.00 0.00 4.40
742 756 0.944386 AACGACACATCACAACAGCC 59.056 50.000 0.00 0.00 0.00 4.85
747 761 3.062639 CGACACATCACAACAGCCTATTC 59.937 47.826 0.00 0.00 0.00 1.75
750 764 5.744171 ACACATCACAACAGCCTATTCATA 58.256 37.500 0.00 0.00 0.00 2.15
752 766 7.508687 ACACATCACAACAGCCTATTCATATA 58.491 34.615 0.00 0.00 0.00 0.86
753 767 7.442364 ACACATCACAACAGCCTATTCATATAC 59.558 37.037 0.00 0.00 0.00 1.47
784 835 1.985116 AGAGTCCCAGTCCGCTTCC 60.985 63.158 0.00 0.00 0.00 3.46
838 899 1.918293 CCTACCCACCACCTCAGCA 60.918 63.158 0.00 0.00 0.00 4.41
914 1008 2.507992 CAGCTCCTCACGCTTCCG 60.508 66.667 0.00 0.00 35.07 4.30
1032 1129 4.214327 GGCTTCGGGAGGCTCTCG 62.214 72.222 30.32 30.32 46.86 4.04
1147 1245 4.377328 GCTTTGAATCGATTTGGTTTTGGC 60.377 41.667 12.81 5.77 0.00 4.52
1194 1292 4.680237 TCGCTGTTGCCAGGTCCG 62.680 66.667 0.00 0.00 39.22 4.79
1294 1392 0.736325 ACGTGCACTACTTCCGCATC 60.736 55.000 16.19 0.00 38.07 3.91
1361 1464 1.810755 ACATGTCACTGCAATCTGCTG 59.189 47.619 0.00 4.22 45.31 4.41
1397 1520 3.455619 AAATTCGCGATGACAAGTGAC 57.544 42.857 10.88 0.00 0.00 3.67
1440 1571 4.485163 GTTTGGCGCATTTCAGAGTATTT 58.515 39.130 10.83 0.00 0.00 1.40
1442 1573 2.159393 TGGCGCATTTCAGAGTATTTGC 60.159 45.455 10.83 0.00 0.00 3.68
1444 1575 3.103738 GCGCATTTCAGAGTATTTGCAG 58.896 45.455 0.30 0.00 0.00 4.41
1447 1578 4.337763 GCATTTCAGAGTATTTGCAGTCG 58.662 43.478 0.00 0.00 0.00 4.18
1450 1581 0.025513 CAGAGTATTTGCAGTCGCGC 59.974 55.000 0.00 0.00 42.97 6.86
1455 1586 1.062587 GTATTTGCAGTCGCGCATTCT 59.937 47.619 8.75 0.00 42.62 2.40
1502 1633 9.220767 GTAGGTTTAGTTCTGACAGAAATTGAT 57.779 33.333 21.94 8.06 35.75 2.57
1534 1667 6.932400 ACATGTTCGTAGTACAGAATTTTGGA 59.068 34.615 0.38 0.00 0.00 3.53
1551 1684 8.543862 AATTTTGGAGCATTTCAGAAATTCTC 57.456 30.769 21.18 21.18 39.45 2.87
1618 1852 8.939201 ATCTATCACAGACTGTATTCAACAAG 57.061 34.615 8.02 0.00 34.40 3.16
1642 1876 0.109412 GTGACCTTGAGCTTGCATGC 60.109 55.000 16.37 16.37 0.00 4.06
1667 1901 4.033932 TGTGATAGATTGACGAAATTGCGG 59.966 41.667 11.31 0.00 35.12 5.69
1699 1933 9.681062 CTTTGAAATATTTTACTACTCCCTCCA 57.319 33.333 1.43 0.00 0.00 3.86
1714 1948 7.406620 ACTCCCTCCAATCCATATTAATTGA 57.593 36.000 7.95 0.00 35.35 2.57
1723 1957 6.560253 ATCCATATTAATTGACGCTGGTTC 57.440 37.500 0.00 0.00 0.00 3.62
1726 1960 5.296780 CCATATTAATTGACGCTGGTTCAGT 59.703 40.000 0.00 0.00 33.43 3.41
1727 1961 6.481976 CCATATTAATTGACGCTGGTTCAGTA 59.518 38.462 0.00 0.00 33.43 2.74
1728 1962 5.796350 ATTAATTGACGCTGGTTCAGTAC 57.204 39.130 0.00 0.00 33.43 2.73
1729 1963 2.831685 ATTGACGCTGGTTCAGTACA 57.168 45.000 0.00 0.00 33.43 2.90
1730 1964 2.605837 TTGACGCTGGTTCAGTACAA 57.394 45.000 0.00 0.00 33.43 2.41
1731 1965 2.605837 TGACGCTGGTTCAGTACAAA 57.394 45.000 0.00 0.00 33.43 2.83
1732 1966 2.479837 TGACGCTGGTTCAGTACAAAG 58.520 47.619 0.00 0.00 33.43 2.77
1733 1967 2.159014 TGACGCTGGTTCAGTACAAAGT 60.159 45.455 0.00 0.00 33.43 2.66
1734 1968 2.870411 GACGCTGGTTCAGTACAAAGTT 59.130 45.455 0.00 0.00 33.43 2.66
1735 1969 3.275999 ACGCTGGTTCAGTACAAAGTTT 58.724 40.909 0.00 0.00 33.43 2.66
1736 1970 3.064820 ACGCTGGTTCAGTACAAAGTTTG 59.935 43.478 14.13 14.13 33.43 2.93
1737 1971 3.064820 CGCTGGTTCAGTACAAAGTTTGT 59.935 43.478 23.85 23.85 38.57 2.83
1738 1972 4.271533 CGCTGGTTCAGTACAAAGTTTGTA 59.728 41.667 21.79 21.79 36.56 2.41
1739 1973 5.049680 CGCTGGTTCAGTACAAAGTTTGTAT 60.050 40.000 26.73 15.26 46.73 2.29
2020 2294 4.923281 GGCCTGAACACAATTCAAACATAC 59.077 41.667 0.00 0.00 0.00 2.39
2104 2378 7.041721 ACATTGAATCGTATCTAAGACTTGCA 58.958 34.615 0.00 0.00 0.00 4.08
2262 2536 3.879295 GCAAAGACATGGCTAAGCAGATA 59.121 43.478 17.67 0.00 0.00 1.98
2317 2591 8.786826 TCGAATTAGTCTGTTGATTTTATGGT 57.213 30.769 0.00 0.00 0.00 3.55
2318 2592 8.879759 TCGAATTAGTCTGTTGATTTTATGGTC 58.120 33.333 0.00 0.00 0.00 4.02
2319 2593 7.846107 CGAATTAGTCTGTTGATTTTATGGTCG 59.154 37.037 0.00 0.00 0.00 4.79
2366 2640 4.130118 CTGATTTTACGGCTGATAAGGCT 58.870 43.478 0.00 0.00 0.00 4.58
2390 2664 9.946165 GCTTTCTAGCTCTTTTACTTACAAAAA 57.054 29.630 0.00 0.00 44.27 1.94
2565 2848 8.975295 ACGATTAGTTCCTAACTTGTTATACCT 58.025 33.333 0.00 0.00 42.81 3.08
2616 2899 8.762645 ACAGATTCCATATAGTTTCAGAGTTCA 58.237 33.333 0.00 0.00 0.00 3.18
2664 2947 1.681264 CCCTTCGGTTGAGCTTTTTGT 59.319 47.619 0.00 0.00 0.00 2.83
2689 2972 8.272176 GTCGATGTGATCTATGAATTCTTGAAC 58.728 37.037 7.05 2.36 0.00 3.18
2751 3034 0.253044 GCTCACCATAGAACCAGCCA 59.747 55.000 0.00 0.00 0.00 4.75
3017 3300 8.513774 GGTTTAAATCGGTTAACCACTTCATAA 58.486 33.333 24.14 11.70 31.22 1.90
3025 3308 7.014422 TCGGTTAACCACTTCATAACCATTTTT 59.986 33.333 24.14 0.00 45.72 1.94
3331 3622 5.357878 TCATACAACATTGAGATTGGCCTTC 59.642 40.000 3.32 0.42 0.00 3.46
3351 3642 1.351017 CCTAGCAGTTCCCTTTGTGGA 59.649 52.381 0.00 0.00 38.35 4.02
3487 3778 3.198635 TCCTGCTTATCAGTTTCCTCCTG 59.801 47.826 0.00 0.00 41.25 3.86
3529 3821 7.701539 ATGTGCTCAAATAATCCTTTACACA 57.298 32.000 0.00 0.00 38.51 3.72
3573 3970 9.294030 CATTTTATACAAGATCTGCCTTTTGTC 57.706 33.333 0.00 0.00 35.55 3.18
3587 3985 4.675114 GCCTTTTGTCGACACTTTACATTG 59.325 41.667 19.90 1.43 0.00 2.82
3633 4031 6.017109 GCACTGACAAACCAGAATAAGAAGAA 60.017 38.462 0.00 0.00 37.59 2.52
3691 4089 5.354054 GATGATCTCATCCATGGTTTTCG 57.646 43.478 12.58 0.00 45.24 3.46
3692 4090 4.486125 TGATCTCATCCATGGTTTTCGA 57.514 40.909 12.58 3.93 0.00 3.71
3693 4091 4.445453 TGATCTCATCCATGGTTTTCGAG 58.555 43.478 12.58 11.20 0.00 4.04
3694 4092 2.632377 TCTCATCCATGGTTTTCGAGC 58.368 47.619 12.58 0.00 0.00 5.03
3695 4093 1.672881 CTCATCCATGGTTTTCGAGCC 59.327 52.381 12.58 0.00 0.00 4.70
3696 4094 0.378257 CATCCATGGTTTTCGAGCCG 59.622 55.000 12.58 0.00 0.00 5.52
3697 4095 1.376609 ATCCATGGTTTTCGAGCCGC 61.377 55.000 12.58 0.00 0.00 6.53
3698 4096 2.098298 CATGGTTTTCGAGCCGCG 59.902 61.111 0.00 0.00 42.69 6.46
3706 4104 3.889044 TCGAGCCGCGACTCATCC 61.889 66.667 22.37 0.00 45.59 3.51
3707 4105 4.193334 CGAGCCGCGACTCATCCA 62.193 66.667 22.37 0.00 44.57 3.41
3708 4106 2.184322 GAGCCGCGACTCATCCAA 59.816 61.111 18.08 0.00 36.65 3.53
3709 4107 1.880340 GAGCCGCGACTCATCCAAG 60.880 63.158 18.08 0.00 36.65 3.61
3710 4108 2.125512 GCCGCGACTCATCCAAGT 60.126 61.111 8.23 0.00 0.00 3.16
3711 4109 2.167861 GCCGCGACTCATCCAAGTC 61.168 63.158 8.23 0.00 41.88 3.01
3717 4115 1.919918 GACTCATCCAAGTCGCTCTG 58.080 55.000 0.00 0.00 36.61 3.35
3718 4116 0.534412 ACTCATCCAAGTCGCTCTGG 59.466 55.000 0.00 0.00 0.00 3.86
3719 4117 0.179089 CTCATCCAAGTCGCTCTGGG 60.179 60.000 0.00 0.00 38.60 4.45
3720 4118 1.153289 CATCCAAGTCGCTCTGGGG 60.153 63.158 1.95 0.00 37.83 4.96
3721 4119 1.613630 ATCCAAGTCGCTCTGGGGT 60.614 57.895 1.95 0.00 37.83 4.95
3722 4120 0.325296 ATCCAAGTCGCTCTGGGGTA 60.325 55.000 1.95 0.00 37.83 3.69
3723 4121 0.970937 TCCAAGTCGCTCTGGGGTAG 60.971 60.000 1.95 0.00 37.83 3.18
3724 4122 1.153549 CAAGTCGCTCTGGGGTAGC 60.154 63.158 0.00 0.00 36.60 3.58
3729 4127 2.809010 GCTCTGGGGTAGCGACTC 59.191 66.667 0.00 0.00 0.00 3.36
3730 4128 3.111939 CTCTGGGGTAGCGACTCG 58.888 66.667 0.00 0.00 0.00 4.18
3731 4129 2.439701 TCTGGGGTAGCGACTCGG 60.440 66.667 0.00 0.00 0.00 4.63
3732 4130 2.439701 CTGGGGTAGCGACTCGGA 60.440 66.667 0.00 0.00 0.00 4.55
3733 4131 2.036098 TGGGGTAGCGACTCGGAA 59.964 61.111 0.00 0.00 0.00 4.30
3734 4132 1.601419 CTGGGGTAGCGACTCGGAAA 61.601 60.000 0.00 0.00 0.00 3.13
3735 4133 0.974010 TGGGGTAGCGACTCGGAAAT 60.974 55.000 0.00 0.00 0.00 2.17
3736 4134 0.529992 GGGGTAGCGACTCGGAAATG 60.530 60.000 0.00 0.00 0.00 2.32
3737 4135 0.175073 GGGTAGCGACTCGGAAATGT 59.825 55.000 0.00 0.00 0.00 2.71
3738 4136 1.557651 GGTAGCGACTCGGAAATGTC 58.442 55.000 0.00 0.00 0.00 3.06
3745 4143 2.670635 CTCGGAAATGTCGAGCCTG 58.329 57.895 0.58 0.00 45.67 4.85
3746 4144 1.424493 CTCGGAAATGTCGAGCCTGC 61.424 60.000 0.58 0.00 45.67 4.85
3747 4145 1.741401 CGGAAATGTCGAGCCTGCA 60.741 57.895 0.00 0.00 0.00 4.41
3748 4146 1.699656 CGGAAATGTCGAGCCTGCAG 61.700 60.000 6.78 6.78 0.00 4.41
3749 4147 0.674895 GGAAATGTCGAGCCTGCAGT 60.675 55.000 13.81 0.00 0.00 4.40
3750 4148 1.160137 GAAATGTCGAGCCTGCAGTT 58.840 50.000 13.81 0.00 0.00 3.16
3751 4149 0.877071 AAATGTCGAGCCTGCAGTTG 59.123 50.000 13.81 0.00 0.00 3.16
3752 4150 1.580845 AATGTCGAGCCTGCAGTTGC 61.581 55.000 13.81 10.03 42.50 4.17
3753 4151 3.782244 GTCGAGCCTGCAGTTGCG 61.782 66.667 13.81 12.51 45.83 4.85
3754 4152 3.989787 TCGAGCCTGCAGTTGCGA 61.990 61.111 13.81 14.63 45.83 5.10
3755 4153 3.782244 CGAGCCTGCAGTTGCGAC 61.782 66.667 13.81 8.67 45.83 5.19
3756 4154 2.358003 GAGCCTGCAGTTGCGACT 60.358 61.111 13.81 0.00 45.83 4.18
3757 4155 1.079819 GAGCCTGCAGTTGCGACTA 60.080 57.895 13.81 0.00 45.83 2.59
3758 4156 1.079543 AGCCTGCAGTTGCGACTAG 60.080 57.895 13.81 1.26 45.83 2.57
3759 4157 1.374758 GCCTGCAGTTGCGACTAGT 60.375 57.895 13.81 0.00 45.83 2.57
3760 4158 1.355066 GCCTGCAGTTGCGACTAGTC 61.355 60.000 13.81 13.18 45.83 2.59
3769 4167 3.079417 CGACTAGTCGCGACTCGT 58.921 61.111 42.28 39.48 46.50 4.18
3770 4168 1.296001 CGACTAGTCGCGACTCGTG 60.296 63.158 40.23 32.04 46.50 4.35
3771 4169 1.681025 CGACTAGTCGCGACTCGTGA 61.681 60.000 40.23 25.92 46.50 4.35
3776 4174 2.735857 TCGCGACTCGTGACTCGA 60.736 61.111 3.71 2.52 46.83 4.04
3789 4187 2.973419 GACTCGAGTCGACTTTGAGT 57.027 50.000 35.29 35.29 41.52 3.41
3790 4188 2.223611 TGACTCGAGTCGACTTTGAGTC 59.776 50.000 40.58 40.58 46.94 3.36
3826 4224 0.303796 TAGTCATGACTAGTCGCGCG 59.696 55.000 27.96 26.76 42.54 6.86
3827 4225 1.062047 GTCATGACTAGTCGCGCGA 59.938 57.895 31.40 31.40 0.00 5.87
3828 4226 1.062047 TCATGACTAGTCGCGCGAC 59.938 57.895 46.21 46.21 44.86 5.19
3836 4234 3.824510 GTCGCGCGACTCGGAAAC 61.825 66.667 45.56 24.68 41.57 2.78
3858 4256 2.985406 TGCTCTCATCTGATCGATCG 57.015 50.000 20.03 9.36 0.00 3.69
3962 4365 5.233476 TGGTTATCAAAGTCGCGATTATGAC 59.767 40.000 14.06 5.67 35.33 3.06
4018 4421 4.657039 TGGGGGCACTACTAATACCTTAAG 59.343 45.833 0.00 0.00 0.00 1.85
4052 4455 3.525537 TCTTCAAGATGATGTCTTCGCC 58.474 45.455 0.00 0.00 45.35 5.54
4167 4570 6.689554 TGACGTGGATGTTAGTATAAACACA 58.310 36.000 0.00 0.00 41.89 3.72
4198 4601 5.278758 CCAAAAATCGGTTAAAGCTCCTCAA 60.279 40.000 0.00 0.00 0.00 3.02
4273 4676 6.071051 GCTCACCCAAAAGGGTTTCAATATAA 60.071 38.462 2.83 0.00 40.77 0.98
4274 4677 7.234661 TCACCCAAAAGGGTTTCAATATAAC 57.765 36.000 2.83 0.00 40.77 1.89
4290 4693 8.887036 TCAATATAACTGCTTATGTGGTACTG 57.113 34.615 0.00 0.00 0.00 2.74
4296 4699 5.994250 ACTGCTTATGTGGTACTGAATGAT 58.006 37.500 0.00 0.00 0.00 2.45
4316 4719 5.467738 TGATGGATTAGGGTGATACAGTCT 58.532 41.667 0.00 0.00 0.00 3.24
4331 4734 9.909644 GTGATACAGTCTAAGTTTCTTTCAGTA 57.090 33.333 0.00 0.00 0.00 2.74
4391 4794 5.854866 CACACACACAGAAATTTGCTATCTG 59.145 40.000 0.00 0.00 44.77 2.90
4406 4809 6.985188 TGCTATCTGTGTAATCCTTGAAAC 57.015 37.500 0.00 0.00 0.00 2.78
4725 5155 4.729868 ACAACTTACCAGGAAAATCAGCT 58.270 39.130 0.00 0.00 0.00 4.24
4772 5202 3.243301 GGCTCTGTGCACCATGATTAATG 60.243 47.826 15.69 0.00 45.15 1.90
4886 5316 1.556911 CACTGGGGTGAGAGTATTGCT 59.443 52.381 0.00 0.00 45.61 3.91
4913 5343 3.185155 GCCAGCAGCACAGCTAAG 58.815 61.111 0.00 0.00 44.54 2.18
4985 5415 2.693267 ACGAGAGCCCTTTTATCACC 57.307 50.000 0.00 0.00 0.00 4.02
5105 5535 7.054491 AGCAAATACTGGTCAAACTGAATTT 57.946 32.000 0.00 0.00 0.00 1.82
5158 5588 2.499197 TGCAAGTACTTCGCCAAATCA 58.501 42.857 20.20 5.14 0.00 2.57
5267 5697 4.816385 AGACGTGCATAATCCCAAATACAG 59.184 41.667 0.00 0.00 0.00 2.74
5410 5841 7.391833 TGTTTTGTTTGTTATTTTTGGGCTCTT 59.608 29.630 0.00 0.00 0.00 2.85
5431 5863 1.468506 TTGCCAGCTACACCACGAGA 61.469 55.000 0.00 0.00 0.00 4.04
5476 5908 6.678547 AGGTTTTGAATGGCATACCCTAATA 58.321 36.000 11.78 0.00 34.03 0.98
5504 5936 5.646793 GCATCATCTGTATGCCATAGTTGAT 59.353 40.000 0.00 0.00 43.17 2.57
5517 5949 2.393271 AGTTGATGAGCAGGTGTAGC 57.607 50.000 0.00 0.00 0.00 3.58
5576 6008 7.865385 ACATTGAAATGCGTGTAATTTTGTACT 59.135 29.630 2.92 0.00 40.04 2.73
5577 6009 8.698854 CATTGAAATGCGTGTAATTTTGTACTT 58.301 29.630 0.00 0.00 0.00 2.24
5601 6033 6.163476 TGTCGAAATAATGCAGAGTTACAGT 58.837 36.000 0.00 0.00 0.00 3.55
5658 6090 4.119136 CTGCAAAACCGAACAAGGAAAAT 58.881 39.130 0.00 0.00 34.73 1.82
5663 6095 6.581166 GCAAAACCGAACAAGGAAAATACTAG 59.419 38.462 0.00 0.00 34.73 2.57
5668 6100 5.642063 CCGAACAAGGAAAATACTAGAAGCA 59.358 40.000 0.00 0.00 0.00 3.91
5769 6221 7.598759 TTTATACTTGAGATGTACTCCCTCC 57.401 40.000 0.00 0.00 44.34 4.30
5770 6222 2.379972 ACTTGAGATGTACTCCCTCCG 58.620 52.381 0.00 0.00 44.34 4.63
5771 6223 2.291670 ACTTGAGATGTACTCCCTCCGT 60.292 50.000 0.00 0.00 44.34 4.69
5772 6224 3.053842 ACTTGAGATGTACTCCCTCCGTA 60.054 47.826 0.00 0.00 44.34 4.02
5773 6225 3.657398 TGAGATGTACTCCCTCCGTAA 57.343 47.619 0.00 0.00 44.34 3.18
5774 6226 3.972133 TGAGATGTACTCCCTCCGTAAA 58.028 45.455 0.00 0.00 44.34 2.01
5775 6227 3.698040 TGAGATGTACTCCCTCCGTAAAC 59.302 47.826 0.00 0.00 44.34 2.01
5776 6228 3.952967 GAGATGTACTCCCTCCGTAAACT 59.047 47.826 0.00 0.00 39.53 2.66
5777 6229 5.121380 AGATGTACTCCCTCCGTAAACTA 57.879 43.478 0.00 0.00 0.00 2.24
5778 6230 5.513233 AGATGTACTCCCTCCGTAAACTAA 58.487 41.667 0.00 0.00 0.00 2.24
5779 6231 6.134754 AGATGTACTCCCTCCGTAAACTAAT 58.865 40.000 0.00 0.00 0.00 1.73
5780 6232 7.293073 AGATGTACTCCCTCCGTAAACTAATA 58.707 38.462 0.00 0.00 0.00 0.98
5781 6233 7.949006 AGATGTACTCCCTCCGTAAACTAATAT 59.051 37.037 0.00 0.00 0.00 1.28
5782 6234 9.236006 GATGTACTCCCTCCGTAAACTAATATA 57.764 37.037 0.00 0.00 0.00 0.86
5783 6235 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
5784 6236 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
5785 6237 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
5786 6238 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
5787 6239 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
5788 6240 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
5789 6241 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
5790 6242 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
5791 6243 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
5792 6244 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
5793 6245 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
5794 6246 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
5808 6260 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
5809 6261 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
5810 6262 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
5811 6263 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
5812 6264 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
5841 6293 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
6125 6577 7.235812 ACCTATCCAAGTATATTTCTGGACTCC 59.764 40.741 2.43 0.00 0.00 3.85
6141 6593 0.872388 CTCCGGTTCCTTTTCCGTTG 59.128 55.000 0.00 0.00 44.51 4.10
6153 6605 0.934496 TTCCGTTGCAGAAGTTGTCG 59.066 50.000 0.00 0.00 0.00 4.35
6165 6617 0.464036 AGTTGTCGAGCAGGTTCACA 59.536 50.000 0.00 0.00 0.00 3.58
6166 6618 1.070758 AGTTGTCGAGCAGGTTCACAT 59.929 47.619 0.00 0.00 0.00 3.21
6167 6619 1.873591 GTTGTCGAGCAGGTTCACATT 59.126 47.619 0.00 0.00 0.00 2.71
6168 6620 2.254546 TGTCGAGCAGGTTCACATTT 57.745 45.000 0.00 0.00 0.00 2.32
6169 6621 2.571212 TGTCGAGCAGGTTCACATTTT 58.429 42.857 0.00 0.00 0.00 1.82
6170 6622 2.290367 TGTCGAGCAGGTTCACATTTTG 59.710 45.455 0.00 0.00 0.00 2.44
6329 6781 6.747125 TGCATTCAAGTTCATTGCTTTTAGA 58.253 32.000 0.00 0.00 38.89 2.10
6374 6826 1.151450 AGAGCCCAGGTGTTTGTGG 59.849 57.895 0.00 0.00 0.00 4.17
6390 6842 0.454600 GTGGCATGCTCACTTGATGG 59.545 55.000 23.79 0.00 32.78 3.51
6405 6857 4.083110 ACTTGATGGCGTCAGAAATCAAAG 60.083 41.667 9.70 4.51 38.27 2.77
6482 6934 4.672587 AACTGCTCTTCTAATATCCGCA 57.327 40.909 0.00 0.00 0.00 5.69
6564 7016 6.741992 TTGCTTCCATAGATGTTACAGTTG 57.258 37.500 0.00 0.00 0.00 3.16
6565 7017 4.635765 TGCTTCCATAGATGTTACAGTTGC 59.364 41.667 0.00 0.00 0.00 4.17
6566 7018 4.878397 GCTTCCATAGATGTTACAGTTGCT 59.122 41.667 0.00 0.00 0.00 3.91
6567 7019 5.220739 GCTTCCATAGATGTTACAGTTGCTG 60.221 44.000 0.00 0.00 37.52 4.41
6569 7021 5.804639 TCCATAGATGTTACAGTTGCTGTT 58.195 37.500 7.11 0.00 42.59 3.16
6570 7022 6.941857 TCCATAGATGTTACAGTTGCTGTTA 58.058 36.000 7.11 0.00 42.59 2.41
6705 7181 9.886132 GACTCCTAAAAATGTATTGGTAGAAGA 57.114 33.333 0.00 0.00 0.00 2.87
6722 7198 0.537143 AGACCGATTTGGCTTGTGCA 60.537 50.000 0.00 0.00 43.94 4.57
6727 7203 1.068402 CGATTTGGCTTGTGCATGTGA 60.068 47.619 0.00 0.00 41.91 3.58
6736 7212 3.670055 GCTTGTGCATGTGAAATGTGTAC 59.330 43.478 0.00 0.00 39.41 2.90
6782 7258 6.872628 TGGTAGAAGATGATTGCATGATTC 57.127 37.500 0.00 0.00 34.11 2.52
6783 7259 6.598503 TGGTAGAAGATGATTGCATGATTCT 58.401 36.000 0.00 0.00 39.08 2.40
6823 7300 3.010627 TCCATGACTGGAGGCATGA 57.989 52.632 21.95 7.18 46.95 3.07
6917 7394 2.684881 CACATGTGGAAAGTATCAGCCC 59.315 50.000 18.51 0.00 0.00 5.19
7235 7720 3.944015 AGCTTCTTGTGCTGATCATTACC 59.056 43.478 0.00 0.00 39.56 2.85
7243 7728 4.940654 TGTGCTGATCATTACCGAATTGAA 59.059 37.500 0.00 0.00 0.00 2.69
7321 7806 4.615961 GGAGAATGTATCCGTTATCGTTCG 59.384 45.833 0.00 0.00 30.21 3.95
7336 7821 3.979948 TCGTTCGATTTACTGGACAACA 58.020 40.909 0.00 0.00 0.00 3.33
7339 7824 5.119588 TCGTTCGATTTACTGGACAACATTC 59.880 40.000 0.00 0.00 0.00 2.67
7394 7879 2.355513 CCAGAGCTAGCAAAGTGTCCAT 60.356 50.000 18.83 0.00 0.00 3.41
7437 7922 6.648725 AAGCTACGTGATTTGTCATTCTAC 57.351 37.500 0.00 0.00 0.00 2.59
7460 7945 5.557866 CCTAAATGGTAAGCCCCTGTATAC 58.442 45.833 0.00 0.00 0.00 1.47
7473 7958 5.499313 CCCCTGTATACGGTCCTTTTAAAA 58.501 41.667 10.79 0.00 0.00 1.52
7602 8088 6.767524 TGATATAACGGGCTTTGAAATTGT 57.232 33.333 0.00 0.00 0.00 2.71
7662 8148 6.715347 ATTTGTTGCTAGTTCAGGAAAAGT 57.285 33.333 0.00 0.00 36.21 2.66
7681 8168 3.718723 AGTTAGTGGATCTCTGGAGCTT 58.281 45.455 0.00 0.00 0.00 3.74
7698 8185 8.730680 TCTGGAGCTTTCTTTTTACATCAATAC 58.269 33.333 0.00 0.00 0.00 1.89
7747 8234 7.250445 ACCAAAAGTTTGCATCTTGAATTTC 57.750 32.000 5.61 0.00 36.86 2.17
7806 8311 5.220080 GCATTTGTACTTTGATTGCACATCG 60.220 40.000 0.00 0.00 0.00 3.84
7817 8322 3.829886 TTGCACATCGGATGAGTTTTC 57.170 42.857 23.98 4.67 0.00 2.29
7826 8331 7.272084 CACATCGGATGAGTTTTCTGAAAAATC 59.728 37.037 27.22 27.22 43.58 2.17
7999 8504 5.931146 TGCTTTTGTGAACAACTTCAACATT 59.069 32.000 0.00 0.00 38.17 2.71
8077 8582 5.243507 TGCATTCCAGTTGAGCAAAGAATTA 59.756 36.000 0.00 0.00 31.42 1.40
8080 8585 7.332678 GCATTCCAGTTGAGCAAAGAATTATTT 59.667 33.333 0.00 0.00 0.00 1.40
8085 8590 9.474920 CCAGTTGAGCAAAGAATTATTTTTACA 57.525 29.630 0.00 0.00 0.00 2.41
8196 8702 7.172532 TGGAGACAACATTGTTGTATGTACTTC 59.827 37.037 28.82 21.19 42.43 3.01
8229 8735 7.739295 TGAAGTTTCTACATTCGCTGTTTATC 58.261 34.615 0.00 0.00 39.39 1.75
8248 8754 4.613925 ATCATGTCATATGGCGAAGAGT 57.386 40.909 2.28 0.00 0.00 3.24
8361 8868 9.520204 CTTACATTTCATTATTTTGGCAGGTAG 57.480 33.333 0.00 0.00 0.00 3.18
8463 8970 6.485313 TCGATGAAAAAGGTTACATTGAGTGT 59.515 34.615 0.00 0.00 44.95 3.55
8464 8971 7.658167 TCGATGAAAAAGGTTACATTGAGTGTA 59.342 33.333 0.00 0.00 42.29 2.90
8474 9009 6.647481 GGTTACATTGAGTGTATGTGTGTGTA 59.353 38.462 0.00 0.00 42.63 2.90
8519 9054 5.874895 TCTCACATGAAAATGCTCTCTTG 57.125 39.130 0.00 0.00 0.00 3.02
8543 9078 2.378547 TCATACAAAGGCCCAAGGTTCT 59.621 45.455 0.00 0.00 0.00 3.01
8544 9079 2.579410 TACAAAGGCCCAAGGTTCTC 57.421 50.000 0.00 0.00 0.00 2.87
8545 9080 0.555769 ACAAAGGCCCAAGGTTCTCA 59.444 50.000 0.00 0.00 0.00 3.27
8565 9100 9.121517 GTTCTCATCAACTGAAAAACATGTATG 57.878 33.333 0.00 0.00 32.14 2.39
8582 9117 8.076714 ACATGTATGTAAACATATTCAGAGCG 57.923 34.615 0.00 0.00 40.53 5.03
8585 9120 7.489160 TGTATGTAAACATATTCAGAGCGAGT 58.511 34.615 6.12 0.00 40.53 4.18
8605 9140 6.257423 CGAGTCATGCTTGCATTGTATTTTA 58.743 36.000 5.24 0.00 0.00 1.52
8691 9228 8.842358 ATTCTTGAAGTCTATTTCGTTGGTTA 57.158 30.769 0.00 0.00 0.00 2.85
8699 9236 8.425577 AGTCTATTTCGTTGGTTAATGATGAG 57.574 34.615 0.00 0.00 32.17 2.90
8751 9288 7.835634 AGAAAGAATCGAAGTGAATTCTACC 57.164 36.000 7.05 0.00 35.61 3.18
8752 9289 6.531948 AGAAAGAATCGAAGTGAATTCTACCG 59.468 38.462 7.05 5.54 35.61 4.02
8753 9290 4.683832 AGAATCGAAGTGAATTCTACCGG 58.316 43.478 7.05 0.00 35.61 5.28
8754 9291 2.953466 TCGAAGTGAATTCTACCGGG 57.047 50.000 6.32 0.00 35.61 5.73
8755 9292 1.134907 TCGAAGTGAATTCTACCGGGC 60.135 52.381 6.32 0.00 35.61 6.13
8756 9293 1.134788 CGAAGTGAATTCTACCGGGCT 60.135 52.381 6.32 0.00 35.61 5.19
8757 9294 2.100252 CGAAGTGAATTCTACCGGGCTA 59.900 50.000 6.32 0.00 35.61 3.93
8758 9295 3.455327 GAAGTGAATTCTACCGGGCTAC 58.545 50.000 6.32 0.00 34.86 3.58
8796 9333 6.808212 CACGGCATTTATTTTGACAGAGATTT 59.192 34.615 0.00 0.00 0.00 2.17
8950 9487 4.884744 TGTTTGGTAGTTACTGCACAATGT 59.115 37.500 2.50 0.00 0.00 2.71
9191 9728 2.739784 CAGCTCGCTCCCTATGGG 59.260 66.667 0.00 0.00 46.11 4.00
9225 10118 2.840038 TCATACCACACAATCTGAGGCT 59.160 45.455 0.00 0.00 33.99 4.58
9291 10199 4.827304 ACTTTCTTTTGAGCTTCTCTGC 57.173 40.909 0.00 0.00 0.00 4.26
9430 10340 7.706100 AAAACTGTGGTAACCTCAAAAACTA 57.294 32.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 9.950680 CGCTTAAATAATGAATTAACATGGACT 57.049 29.630 0.00 0.00 0.00 3.85
105 106 3.075148 GTGGAGAACTAGAAAGCAACCC 58.925 50.000 0.00 0.00 0.00 4.11
137 138 1.740025 GACTTGCACACCAGCCTTATC 59.260 52.381 0.00 0.00 0.00 1.75
147 148 4.142600 GGACCAGATTTATGACTTGCACAC 60.143 45.833 0.00 0.00 0.00 3.82
187 188 4.040829 CACTTCCATGTCTGGCATATCCTA 59.959 45.833 0.00 0.00 42.80 2.94
386 390 7.818930 ACAATTGCCTATAACATGACAAAAAGG 59.181 33.333 5.05 0.00 0.00 3.11
387 391 8.761575 ACAATTGCCTATAACATGACAAAAAG 57.238 30.769 5.05 0.00 0.00 2.27
403 407 8.428852 AGTTCAAATTTACCTTTACAATTGCCT 58.571 29.630 5.05 0.00 0.00 4.75
559 565 2.105659 CCGCAAAACGTGTTTGTACTG 58.894 47.619 18.08 0.00 41.42 2.74
560 566 1.064357 CCCGCAAAACGTGTTTGTACT 59.936 47.619 18.08 0.00 41.42 2.73
561 567 1.202166 ACCCGCAAAACGTGTTTGTAC 60.202 47.619 18.08 0.00 41.42 2.90
562 568 1.063764 GACCCGCAAAACGTGTTTGTA 59.936 47.619 18.08 0.00 41.42 2.41
563 569 0.179158 GACCCGCAAAACGTGTTTGT 60.179 50.000 18.08 3.28 41.42 2.83
564 570 1.197368 CGACCCGCAAAACGTGTTTG 61.197 55.000 14.77 14.77 41.42 2.93
565 571 1.062845 CGACCCGCAAAACGTGTTT 59.937 52.632 0.00 0.00 41.42 2.83
566 572 2.710698 CGACCCGCAAAACGTGTT 59.289 55.556 0.00 0.00 41.42 3.32
567 573 2.641439 TACCGACCCGCAAAACGTGT 62.641 55.000 0.00 0.00 41.42 4.49
568 574 1.293267 ATACCGACCCGCAAAACGTG 61.293 55.000 0.00 0.00 41.42 4.49
569 575 0.603439 AATACCGACCCGCAAAACGT 60.603 50.000 0.00 0.00 41.42 3.99
570 576 0.518195 AAATACCGACCCGCAAAACG 59.482 50.000 0.00 0.00 43.15 3.60
571 577 2.321263 CAAAATACCGACCCGCAAAAC 58.679 47.619 0.00 0.00 0.00 2.43
572 578 1.336056 GCAAAATACCGACCCGCAAAA 60.336 47.619 0.00 0.00 0.00 2.44
573 579 0.241481 GCAAAATACCGACCCGCAAA 59.759 50.000 0.00 0.00 0.00 3.68
574 580 1.877367 GCAAAATACCGACCCGCAA 59.123 52.632 0.00 0.00 0.00 4.85
575 581 2.392181 CGCAAAATACCGACCCGCA 61.392 57.895 0.00 0.00 0.00 5.69
576 582 2.401990 CGCAAAATACCGACCCGC 59.598 61.111 0.00 0.00 0.00 6.13
577 583 2.466140 CCCGCAAAATACCGACCCG 61.466 63.158 0.00 0.00 0.00 5.28
578 584 2.767445 GCCCGCAAAATACCGACCC 61.767 63.158 0.00 0.00 0.00 4.46
579 585 1.712018 GAGCCCGCAAAATACCGACC 61.712 60.000 0.00 0.00 0.00 4.79
580 586 1.712018 GGAGCCCGCAAAATACCGAC 61.712 60.000 0.00 0.00 0.00 4.79
581 587 1.450669 GGAGCCCGCAAAATACCGA 60.451 57.895 0.00 0.00 0.00 4.69
582 588 2.819552 CGGAGCCCGCAAAATACCG 61.820 63.158 0.56 0.00 41.17 4.02
583 589 3.107447 CGGAGCCCGCAAAATACC 58.893 61.111 0.56 0.00 41.17 2.73
595 601 1.106285 AATCCAATTTGGCTCGGAGC 58.894 50.000 21.57 21.57 41.46 4.70
596 602 2.099756 GGAAATCCAATTTGGCTCGGAG 59.900 50.000 10.76 0.00 37.47 4.63
597 603 2.099405 GGAAATCCAATTTGGCTCGGA 58.901 47.619 10.76 0.00 37.47 4.55
598 604 1.202290 CGGAAATCCAATTTGGCTCGG 60.202 52.381 10.76 7.61 37.47 4.63
599 605 1.202290 CCGGAAATCCAATTTGGCTCG 60.202 52.381 10.76 9.00 37.47 5.03
600 606 1.824852 ACCGGAAATCCAATTTGGCTC 59.175 47.619 9.46 6.95 37.47 4.70
601 607 1.937191 ACCGGAAATCCAATTTGGCT 58.063 45.000 9.46 0.00 37.47 4.75
602 608 2.760634 AACCGGAAATCCAATTTGGC 57.239 45.000 9.46 0.00 37.47 4.52
603 609 5.810074 GTGATAAACCGGAAATCCAATTTGG 59.190 40.000 9.46 9.28 39.43 3.28
604 610 5.514914 CGTGATAAACCGGAAATCCAATTTG 59.485 40.000 9.46 0.00 35.14 2.32
605 611 5.646606 CGTGATAAACCGGAAATCCAATTT 58.353 37.500 9.46 0.00 35.14 1.82
606 612 5.243426 CGTGATAAACCGGAAATCCAATT 57.757 39.130 9.46 0.00 35.14 2.32
607 613 4.893424 CGTGATAAACCGGAAATCCAAT 57.107 40.909 9.46 0.00 35.14 3.16
616 622 2.223971 ACTATGAGCCGTGATAAACCGG 60.224 50.000 0.00 0.00 46.90 5.28
617 623 3.093717 ACTATGAGCCGTGATAAACCG 57.906 47.619 0.00 0.00 0.00 4.44
618 624 4.439057 TGAACTATGAGCCGTGATAAACC 58.561 43.478 0.00 0.00 0.00 3.27
619 625 5.109903 ACTGAACTATGAGCCGTGATAAAC 58.890 41.667 0.00 0.00 0.00 2.01
620 626 5.339008 ACTGAACTATGAGCCGTGATAAA 57.661 39.130 0.00 0.00 0.00 1.40
621 627 6.459670 TTACTGAACTATGAGCCGTGATAA 57.540 37.500 0.00 0.00 0.00 1.75
622 628 6.320418 TCTTTACTGAACTATGAGCCGTGATA 59.680 38.462 0.00 0.00 0.00 2.15
623 629 5.127194 TCTTTACTGAACTATGAGCCGTGAT 59.873 40.000 0.00 0.00 0.00 3.06
624 630 4.461431 TCTTTACTGAACTATGAGCCGTGA 59.539 41.667 0.00 0.00 0.00 4.35
625 631 4.744570 TCTTTACTGAACTATGAGCCGTG 58.255 43.478 0.00 0.00 0.00 4.94
626 632 4.463186 ACTCTTTACTGAACTATGAGCCGT 59.537 41.667 0.00 0.00 0.00 5.68
627 633 5.000012 ACTCTTTACTGAACTATGAGCCG 58.000 43.478 0.00 0.00 0.00 5.52
628 634 6.398918 TCAACTCTTTACTGAACTATGAGCC 58.601 40.000 0.00 0.00 0.00 4.70
629 635 6.533367 CCTCAACTCTTTACTGAACTATGAGC 59.467 42.308 0.00 0.00 31.56 4.26
630 636 7.543868 CACCTCAACTCTTTACTGAACTATGAG 59.456 40.741 0.00 0.00 0.00 2.90
631 637 7.378966 CACCTCAACTCTTTACTGAACTATGA 58.621 38.462 0.00 0.00 0.00 2.15
632 638 6.091441 GCACCTCAACTCTTTACTGAACTATG 59.909 42.308 0.00 0.00 0.00 2.23
633 639 6.166982 GCACCTCAACTCTTTACTGAACTAT 58.833 40.000 0.00 0.00 0.00 2.12
634 640 5.510861 GGCACCTCAACTCTTTACTGAACTA 60.511 44.000 0.00 0.00 0.00 2.24
635 641 4.381411 GCACCTCAACTCTTTACTGAACT 58.619 43.478 0.00 0.00 0.00 3.01
636 642 3.498777 GGCACCTCAACTCTTTACTGAAC 59.501 47.826 0.00 0.00 0.00 3.18
637 643 3.740115 GGCACCTCAACTCTTTACTGAA 58.260 45.455 0.00 0.00 0.00 3.02
638 644 2.288825 CGGCACCTCAACTCTTTACTGA 60.289 50.000 0.00 0.00 0.00 3.41
639 645 2.069273 CGGCACCTCAACTCTTTACTG 58.931 52.381 0.00 0.00 0.00 2.74
640 646 1.692519 ACGGCACCTCAACTCTTTACT 59.307 47.619 0.00 0.00 0.00 2.24
641 647 2.067013 GACGGCACCTCAACTCTTTAC 58.933 52.381 0.00 0.00 0.00 2.01
642 648 1.689813 TGACGGCACCTCAACTCTTTA 59.310 47.619 0.00 0.00 0.00 1.85
643 649 0.468226 TGACGGCACCTCAACTCTTT 59.532 50.000 0.00 0.00 0.00 2.52
644 650 0.249911 GTGACGGCACCTCAACTCTT 60.250 55.000 11.38 0.00 39.14 2.85
645 651 1.367840 GTGACGGCACCTCAACTCT 59.632 57.895 11.38 0.00 39.14 3.24
646 652 2.022129 CGTGACGGCACCTCAACTC 61.022 63.158 17.58 0.00 42.09 3.01
675 689 5.047802 TCCACAGATTTTCAGATTCTTTGGC 60.048 40.000 0.00 0.00 36.33 4.52
695 709 2.945668 GTGGGAGATGCTGTTTATCCAC 59.054 50.000 0.00 0.00 36.97 4.02
724 738 0.106708 AGGCTGTTGTGATGTGTCGT 59.893 50.000 0.00 0.00 0.00 4.34
732 746 7.360113 TCAGTATATGAATAGGCTGTTGTGA 57.640 36.000 0.00 0.00 34.02 3.58
757 773 3.756117 GGACTGGGACTCTGTCATTTTT 58.244 45.455 13.67 0.00 43.46 1.94
784 835 4.680237 TTGCCTGACGCTGACGGG 62.680 66.667 0.00 0.00 46.04 5.28
826 887 3.596066 CTCCGGTGCTGAGGTGGTG 62.596 68.421 0.00 0.00 0.00 4.17
894 988 1.446966 GAAGCGTGAGGAGCTGGAC 60.447 63.158 0.00 0.00 45.31 4.02
895 989 2.650116 GGAAGCGTGAGGAGCTGGA 61.650 63.158 0.00 0.00 45.31 3.86
918 1012 1.201343 GATTCGTTCTAGCTCGTGCC 58.799 55.000 5.73 0.00 40.80 5.01
932 1026 1.329906 GCTGCTGAATGAGTGGATTCG 59.670 52.381 0.00 0.00 35.43 3.34
1032 1129 2.883253 GACAGCGCGAGGAGAAGC 60.883 66.667 12.10 0.00 0.00 3.86
1113 1210 0.603065 ATTCAAAGCCCGAGCAAACC 59.397 50.000 0.00 0.00 43.56 3.27
1204 1302 0.665835 CGATCCAGAACCTCCTCGAG 59.334 60.000 5.13 5.13 0.00 4.04
1205 1303 0.255033 TCGATCCAGAACCTCCTCGA 59.745 55.000 0.00 0.00 33.23 4.04
1361 1464 4.327627 GCGAATTTACTGACTGAACTCTCC 59.672 45.833 0.00 0.00 0.00 3.71
1397 1520 4.253685 ACCACCAATCTATCAGTTGAACG 58.746 43.478 0.00 0.00 0.00 3.95
1442 1573 1.010935 ACTGACAGAATGCGCGACTG 61.011 55.000 12.10 20.75 42.53 3.51
1444 1575 0.093705 GAACTGACAGAATGCGCGAC 59.906 55.000 12.10 0.88 42.53 5.19
1447 1578 1.151668 ACAGAACTGACAGAATGCGC 58.848 50.000 10.08 0.00 42.53 6.09
1450 1581 5.698089 ACACATGTACAGAACTGACAGAATG 59.302 40.000 10.08 7.08 46.00 2.67
1455 1586 4.765273 ACAACACATGTACAGAACTGACA 58.235 39.130 8.87 8.69 41.63 3.58
1517 1650 7.816640 TGAAATGCTCCAAAATTCTGTACTAC 58.183 34.615 0.00 0.00 0.00 2.73
1518 1651 7.882791 TCTGAAATGCTCCAAAATTCTGTACTA 59.117 33.333 0.00 0.00 0.00 1.82
1519 1652 6.716628 TCTGAAATGCTCCAAAATTCTGTACT 59.283 34.615 0.00 0.00 0.00 2.73
1534 1667 9.810545 GTAGTAGTAGAGAATTTCTGAAATGCT 57.189 33.333 20.97 20.97 39.52 3.79
1618 1852 0.951040 CAAGCTCAAGGTCACCCGAC 60.951 60.000 0.00 0.00 41.80 4.79
1642 1876 5.505286 GCAATTTCGTCAATCTATCACAGG 58.495 41.667 0.00 0.00 0.00 4.00
1693 1927 5.106157 GCGTCAATTAATATGGATTGGAGGG 60.106 44.000 9.98 2.10 34.74 4.30
1699 1933 6.545666 TGAACCAGCGTCAATTAATATGGATT 59.454 34.615 0.00 0.00 0.00 3.01
1714 1948 2.614829 ACTTTGTACTGAACCAGCGT 57.385 45.000 0.00 0.00 34.37 5.07
1728 1962 7.672351 TGTCGCTGTTTTAATACAAACTTTG 57.328 32.000 0.00 0.00 37.51 2.77
1729 1963 8.865590 ATTGTCGCTGTTTTAATACAAACTTT 57.134 26.923 0.38 0.00 37.51 2.66
1730 1964 8.865590 AATTGTCGCTGTTTTAATACAAACTT 57.134 26.923 0.38 0.00 37.51 2.66
1731 1965 9.953697 TTAATTGTCGCTGTTTTAATACAAACT 57.046 25.926 0.38 0.00 37.51 2.66
1739 1973 9.944663 GATCCATATTAATTGTCGCTGTTTTAA 57.055 29.630 0.00 0.00 0.00 1.52
1744 1978 4.690748 CCGATCCATATTAATTGTCGCTGT 59.309 41.667 0.00 0.00 0.00 4.40
1817 2051 8.499514 GCTTATTCAGTCATTTTATAAGCTGC 57.500 34.615 14.56 0.00 44.99 5.25
1927 2201 3.773117 GCAACGTGCATGTAAGCTT 57.227 47.368 22.30 3.48 44.26 3.74
2020 2294 1.265635 TCGTGCAAATTCCAAGGAACG 59.734 47.619 3.19 3.14 36.91 3.95
2104 2378 6.676456 GCATGACGAGCATTTCTAATTCTTGT 60.676 38.462 0.00 0.00 34.15 3.16
2297 2571 6.092122 CAGCGACCATAAAATCAACAGACTAA 59.908 38.462 0.00 0.00 0.00 2.24
2303 2577 5.697473 TTTCAGCGACCATAAAATCAACA 57.303 34.783 0.00 0.00 0.00 3.33
2304 2578 7.915397 ACATATTTCAGCGACCATAAAATCAAC 59.085 33.333 0.00 0.00 0.00 3.18
2305 2579 7.995289 ACATATTTCAGCGACCATAAAATCAA 58.005 30.769 0.00 0.00 0.00 2.57
2353 2627 2.139118 GCTAGAAAGCCTTATCAGCCG 58.861 52.381 0.00 0.00 43.40 5.52
2565 2848 9.485206 GTACTAATACAAAGAACTTCTGAACCA 57.515 33.333 0.00 0.00 0.00 3.67
2616 2899 5.505181 ACTATCACAACCCAATCAACTCT 57.495 39.130 0.00 0.00 0.00 3.24
2664 2947 7.439356 GGTTCAAGAATTCATAGATCACATCGA 59.561 37.037 8.44 0.00 0.00 3.59
2751 3034 5.664457 TGAGTCTGATGATCGCAGTTTAAT 58.336 37.500 13.20 0.00 34.98 1.40
3017 3300 9.660180 ACTTGTTACACAAAACATAAAAATGGT 57.340 25.926 0.00 0.00 37.69 3.55
3267 3558 8.796475 CCATGCCTAGTAAGTATGCAAAATTAT 58.204 33.333 0.00 0.00 36.07 1.28
3331 3622 1.351017 TCCACAAAGGGAACTGCTAGG 59.649 52.381 0.00 0.00 42.68 3.02
3487 3778 8.777413 TGAGCACATATCATTCTTGCTTATTAC 58.223 33.333 0.00 0.00 43.53 1.89
3552 3844 5.810587 GTCGACAAAAGGCAGATCTTGTATA 59.189 40.000 11.55 0.00 32.31 1.47
3561 3958 2.325583 AAGTGTCGACAAAAGGCAGA 57.674 45.000 21.95 0.00 0.00 4.26
3573 3970 6.160664 ACGTTAATCCAATGTAAAGTGTCG 57.839 37.500 0.00 0.00 34.49 4.35
3611 4009 8.159344 ACTTTCTTCTTATTCTGGTTTGTCAG 57.841 34.615 0.00 0.00 36.17 3.51
3670 4068 5.039920 TCGAAAACCATGGATGAGATCAT 57.960 39.130 21.47 0.00 39.70 2.45
3671 4069 4.445453 CTCGAAAACCATGGATGAGATCA 58.555 43.478 21.47 0.00 0.00 2.92
3672 4070 3.249559 GCTCGAAAACCATGGATGAGATC 59.750 47.826 21.47 6.69 0.00 2.75
3673 4071 3.209410 GCTCGAAAACCATGGATGAGAT 58.791 45.455 21.47 0.00 0.00 2.75
3674 4072 2.632377 GCTCGAAAACCATGGATGAGA 58.368 47.619 21.47 9.86 0.00 3.27
3675 4073 1.672881 GGCTCGAAAACCATGGATGAG 59.327 52.381 21.47 16.98 0.00 2.90
3676 4074 1.750193 GGCTCGAAAACCATGGATGA 58.250 50.000 21.47 7.32 0.00 2.92
3677 4075 0.378257 CGGCTCGAAAACCATGGATG 59.622 55.000 21.47 2.87 0.00 3.51
3678 4076 1.376609 GCGGCTCGAAAACCATGGAT 61.377 55.000 21.47 2.68 0.00 3.41
3679 4077 2.038269 GCGGCTCGAAAACCATGGA 61.038 57.895 21.47 0.00 0.00 3.41
3680 4078 2.485122 GCGGCTCGAAAACCATGG 59.515 61.111 11.19 11.19 0.00 3.66
3681 4079 2.098298 CGCGGCTCGAAAACCATG 59.902 61.111 0.00 0.00 41.67 3.66
3682 4080 2.047655 TCGCGGCTCGAAAACCAT 60.048 55.556 6.13 0.00 45.36 3.55
3689 4087 3.889044 GGATGAGTCGCGGCTCGA 61.889 66.667 32.97 22.88 46.29 4.04
3690 4088 3.699955 TTGGATGAGTCGCGGCTCG 62.700 63.158 32.97 0.00 38.28 5.03
3691 4089 1.880340 CTTGGATGAGTCGCGGCTC 60.880 63.158 32.84 32.84 36.12 4.70
3692 4090 2.185350 CTTGGATGAGTCGCGGCT 59.815 61.111 15.91 15.91 0.00 5.52
3693 4091 2.125512 ACTTGGATGAGTCGCGGC 60.126 61.111 0.21 0.21 0.00 6.53
3694 4092 4.094684 GACTTGGATGAGTCGCGG 57.905 61.111 6.13 0.00 36.97 6.46
3698 4096 1.470632 CCAGAGCGACTTGGATGAGTC 60.471 57.143 0.00 0.00 42.05 3.36
3699 4097 0.534412 CCAGAGCGACTTGGATGAGT 59.466 55.000 0.00 0.00 0.00 3.41
3700 4098 0.179089 CCCAGAGCGACTTGGATGAG 60.179 60.000 0.00 0.00 33.76 2.90
3701 4099 1.617018 CCCCAGAGCGACTTGGATGA 61.617 60.000 5.83 0.00 33.76 2.92
3702 4100 1.153289 CCCCAGAGCGACTTGGATG 60.153 63.158 5.83 0.00 33.76 3.51
3703 4101 0.325296 TACCCCAGAGCGACTTGGAT 60.325 55.000 5.83 0.00 33.76 3.41
3704 4102 0.970937 CTACCCCAGAGCGACTTGGA 60.971 60.000 5.83 0.00 33.76 3.53
3705 4103 1.517832 CTACCCCAGAGCGACTTGG 59.482 63.158 0.00 0.00 0.00 3.61
3706 4104 1.153549 GCTACCCCAGAGCGACTTG 60.154 63.158 0.00 0.00 0.00 3.16
3707 4105 3.300013 GCTACCCCAGAGCGACTT 58.700 61.111 0.00 0.00 0.00 3.01
3712 4110 2.809010 GAGTCGCTACCCCAGAGC 59.191 66.667 0.00 0.00 36.54 4.09
3713 4111 2.482333 CCGAGTCGCTACCCCAGAG 61.482 68.421 7.12 0.00 0.00 3.35
3714 4112 2.439701 CCGAGTCGCTACCCCAGA 60.440 66.667 7.12 0.00 0.00 3.86
3715 4113 1.601419 TTTCCGAGTCGCTACCCCAG 61.601 60.000 7.12 0.00 0.00 4.45
3716 4114 0.974010 ATTTCCGAGTCGCTACCCCA 60.974 55.000 7.12 0.00 0.00 4.96
3717 4115 0.529992 CATTTCCGAGTCGCTACCCC 60.530 60.000 7.12 0.00 0.00 4.95
3718 4116 0.175073 ACATTTCCGAGTCGCTACCC 59.825 55.000 7.12 0.00 0.00 3.69
3719 4117 1.557651 GACATTTCCGAGTCGCTACC 58.442 55.000 7.12 0.00 0.00 3.18
3728 4126 1.447838 GCAGGCTCGACATTTCCGA 60.448 57.895 0.00 0.00 34.61 4.55
3729 4127 1.699656 CTGCAGGCTCGACATTTCCG 61.700 60.000 5.57 0.00 0.00 4.30
3730 4128 0.674895 ACTGCAGGCTCGACATTTCC 60.675 55.000 19.93 0.00 0.00 3.13
3731 4129 1.135859 CAACTGCAGGCTCGACATTTC 60.136 52.381 19.93 0.00 0.00 2.17
3732 4130 0.877071 CAACTGCAGGCTCGACATTT 59.123 50.000 19.93 0.00 0.00 2.32
3733 4131 1.580845 GCAACTGCAGGCTCGACATT 61.581 55.000 19.93 0.00 41.59 2.71
3734 4132 2.037136 GCAACTGCAGGCTCGACAT 61.037 57.895 19.93 0.00 41.59 3.06
3735 4133 2.666190 GCAACTGCAGGCTCGACA 60.666 61.111 19.93 0.00 41.59 4.35
3736 4134 3.782244 CGCAACTGCAGGCTCGAC 61.782 66.667 19.93 0.00 42.21 4.20
3737 4135 3.989787 TCGCAACTGCAGGCTCGA 61.990 61.111 19.93 18.82 42.21 4.04
3738 4136 2.819117 TAGTCGCAACTGCAGGCTCG 62.819 60.000 19.93 16.84 42.21 5.03
3739 4137 1.079819 TAGTCGCAACTGCAGGCTC 60.080 57.895 19.93 8.48 42.21 4.70
3740 4138 1.079543 CTAGTCGCAACTGCAGGCT 60.080 57.895 19.93 0.99 42.21 4.58
3741 4139 1.355066 GACTAGTCGCAACTGCAGGC 61.355 60.000 19.93 11.86 42.21 4.85
3742 4140 1.073216 CGACTAGTCGCAACTGCAGG 61.073 60.000 30.44 1.57 46.50 4.85
3743 4141 2.353807 CGACTAGTCGCAACTGCAG 58.646 57.895 30.44 13.48 46.50 4.41
3744 4142 4.552278 CGACTAGTCGCAACTGCA 57.448 55.556 30.44 0.00 46.50 4.41
3753 4151 0.247223 GTCACGAGTCGCGACTAGTC 60.247 60.000 40.22 29.75 43.74 2.59
3754 4152 0.669932 AGTCACGAGTCGCGACTAGT 60.670 55.000 38.37 38.37 45.36 2.57
3755 4153 0.025256 GAGTCACGAGTCGCGACTAG 59.975 60.000 39.33 38.13 46.78 2.57
3756 4154 1.681025 CGAGTCACGAGTCGCGACTA 61.681 60.000 39.33 22.87 46.78 2.59
3758 4156 2.571096 CGAGTCACGAGTCGCGAC 60.571 66.667 31.30 31.30 45.62 5.19
3767 4165 1.070108 TCAAAGTCGACTCGAGTCACG 60.070 52.381 37.14 27.79 44.99 4.35
3768 4166 2.031857 ACTCAAAGTCGACTCGAGTCAC 60.032 50.000 37.14 31.41 44.99 3.67
3769 4167 2.219458 ACTCAAAGTCGACTCGAGTCA 58.781 47.619 37.14 24.51 44.99 3.41
3770 4168 2.841874 GACTCAAAGTCGACTCGAGTC 58.158 52.381 36.82 36.82 44.00 3.36
3771 4169 2.973419 GACTCAAAGTCGACTCGAGT 57.027 50.000 33.81 33.81 41.56 4.18
3807 4205 0.303796 CGCGCGACTAGTCATGACTA 59.696 55.000 29.19 29.19 42.54 2.59
3808 4206 1.062685 CGCGCGACTAGTCATGACT 59.937 57.895 30.11 30.11 45.02 3.41
3809 4207 1.062047 TCGCGCGACTAGTCATGAC 59.938 57.895 31.40 18.47 0.00 3.06
3810 4208 1.062047 GTCGCGCGACTAGTCATGA 59.938 57.895 45.56 16.00 41.57 3.07
3811 4209 3.589982 GTCGCGCGACTAGTCATG 58.410 61.111 45.56 14.28 41.57 3.07
3819 4217 3.824510 GTTTCCGAGTCGCGCGAC 61.825 66.667 46.21 46.21 44.86 5.19
3822 4220 2.813908 ATGGTTTCCGAGTCGCGC 60.814 61.111 7.12 0.00 39.11 6.86
3823 4221 3.081133 CATGGTTTCCGAGTCGCG 58.919 61.111 7.12 0.00 40.47 5.87
3824 4222 1.696832 GAGCATGGTTTCCGAGTCGC 61.697 60.000 7.12 0.00 0.00 5.19
3825 4223 0.108615 AGAGCATGGTTTCCGAGTCG 60.109 55.000 5.29 5.29 0.00 4.18
3826 4224 1.066858 TGAGAGCATGGTTTCCGAGTC 60.067 52.381 12.40 0.00 0.00 3.36
3827 4225 0.976641 TGAGAGCATGGTTTCCGAGT 59.023 50.000 12.40 0.00 0.00 4.18
3828 4226 2.158986 AGATGAGAGCATGGTTTCCGAG 60.159 50.000 12.40 0.00 34.11 4.63
3829 4227 1.833630 AGATGAGAGCATGGTTTCCGA 59.166 47.619 12.40 0.00 34.11 4.55
3830 4228 1.938577 CAGATGAGAGCATGGTTTCCG 59.061 52.381 12.40 0.00 34.11 4.30
3831 4229 3.272574 TCAGATGAGAGCATGGTTTCC 57.727 47.619 12.40 0.00 34.11 3.13
3832 4230 3.493877 CGATCAGATGAGAGCATGGTTTC 59.506 47.826 8.42 8.42 34.11 2.78
3833 4231 3.133542 TCGATCAGATGAGAGCATGGTTT 59.866 43.478 0.00 0.00 34.11 3.27
3834 4232 2.697229 TCGATCAGATGAGAGCATGGTT 59.303 45.455 0.00 0.00 34.11 3.67
3835 4233 2.314246 TCGATCAGATGAGAGCATGGT 58.686 47.619 0.00 0.00 34.11 3.55
3836 4234 3.513662 GATCGATCAGATGAGAGCATGG 58.486 50.000 20.52 0.00 40.26 3.66
3837 4235 3.172824 CGATCGATCAGATGAGAGCATG 58.827 50.000 24.40 0.25 40.26 4.06
4018 4421 5.359009 TCATCTTGAAGAATTGCTCCATTCC 59.641 40.000 0.00 0.00 0.00 3.01
4122 4525 9.971922 ACGTCATATTATACTAGGGTGTTTAAC 57.028 33.333 0.00 0.00 0.00 2.01
4123 4526 9.970395 CACGTCATATTATACTAGGGTGTTTAA 57.030 33.333 0.00 0.00 0.00 1.52
4124 4527 8.579006 CCACGTCATATTATACTAGGGTGTTTA 58.421 37.037 0.00 0.00 0.00 2.01
4125 4528 7.288389 TCCACGTCATATTATACTAGGGTGTTT 59.712 37.037 0.00 0.00 0.00 2.83
4126 4529 6.779049 TCCACGTCATATTATACTAGGGTGTT 59.221 38.462 0.00 0.00 0.00 3.32
4127 4530 6.309357 TCCACGTCATATTATACTAGGGTGT 58.691 40.000 0.00 0.00 0.00 4.16
4128 4531 6.829229 TCCACGTCATATTATACTAGGGTG 57.171 41.667 0.00 0.00 0.00 4.61
4129 4532 6.952358 ACATCCACGTCATATTATACTAGGGT 59.048 38.462 0.00 0.00 0.00 4.34
4130 4533 7.406031 ACATCCACGTCATATTATACTAGGG 57.594 40.000 0.00 0.00 0.00 3.53
4159 4562 6.150474 CCGATTTTTGGGTCTAGTGTGTTTAT 59.850 38.462 0.00 0.00 0.00 1.40
4167 4570 5.182570 GCTTTAACCGATTTTTGGGTCTAGT 59.817 40.000 0.00 0.00 34.85 2.57
4180 4583 2.987232 GGTTGAGGAGCTTTAACCGAT 58.013 47.619 0.00 0.00 33.95 4.18
4273 4676 5.420725 TCATTCAGTACCACATAAGCAGT 57.579 39.130 0.00 0.00 0.00 4.40
4274 4677 5.237996 CCATCATTCAGTACCACATAAGCAG 59.762 44.000 0.00 0.00 0.00 4.24
4290 4693 6.773638 ACTGTATCACCCTAATCCATCATTC 58.226 40.000 0.00 0.00 0.00 2.67
4296 4699 6.441222 ACTTAGACTGTATCACCCTAATCCA 58.559 40.000 0.00 0.00 0.00 3.41
4331 4734 8.736097 GGGGGATTGAAAATATAGGGTTATTT 57.264 34.615 0.00 0.00 34.11 1.40
4359 4762 3.790416 CTGTGTGTGTGGGTGGGGG 62.790 68.421 0.00 0.00 0.00 5.40
4368 4771 5.532406 ACAGATAGCAAATTTCTGTGTGTGT 59.468 36.000 8.57 0.00 46.19 3.72
4391 4794 4.275936 ACAGTGCAGTTTCAAGGATTACAC 59.724 41.667 0.00 0.00 0.00 2.90
4589 5019 6.478512 AACTGAGGAAAACCAAAAGCATAA 57.521 33.333 0.00 0.00 0.00 1.90
4713 5143 4.460731 GCACTTAAAGGAGCTGATTTTCCT 59.539 41.667 0.00 0.00 45.65 3.36
4725 5155 3.322828 AGACCACTTACGCACTTAAAGGA 59.677 43.478 0.00 0.00 0.00 3.36
4886 5316 2.858622 GCTGCTGGCATCTGTTGTA 58.141 52.632 0.00 0.00 41.35 2.41
4913 5343 5.334182 GCGGCATAGAATACTTTTAAGAGCC 60.334 44.000 0.00 0.00 0.00 4.70
5410 5841 1.005037 CGTGGTGTAGCTGGCAAGA 60.005 57.895 0.00 0.00 0.00 3.02
5504 5936 2.099141 GTGATTGCTACACCTGCTCA 57.901 50.000 0.00 0.00 32.84 4.26
5576 6008 6.649141 ACTGTAACTCTGCATTATTTCGACAA 59.351 34.615 0.00 0.00 0.00 3.18
5577 6009 6.163476 ACTGTAACTCTGCATTATTTCGACA 58.837 36.000 0.00 0.00 0.00 4.35
5588 6020 5.284861 TCTTGGTTTACTGTAACTCTGCA 57.715 39.130 0.00 0.00 0.00 4.41
5614 6046 6.738114 CAGGTTTTGCATAGTTCTTCTTTCA 58.262 36.000 0.00 0.00 0.00 2.69
5645 6077 6.721571 TGCTTCTAGTATTTTCCTTGTTCG 57.278 37.500 0.00 0.00 0.00 3.95
5663 6095 9.181805 GACCTTCTTTGTTACTTTTATTGCTTC 57.818 33.333 0.00 0.00 0.00 3.86
5760 6212 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
5761 6213 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
5762 6214 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
5763 6215 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
5764 6216 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
5765 6217 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
5766 6218 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
5767 6219 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
5768 6220 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
5782 6234 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
5783 6235 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
5784 6236 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
5785 6237 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
5786 6238 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
5815 6267 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
5817 6269 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
5833 6285 8.657712 ACAGTAGTTTAAAAATACTCCCTCTGT 58.342 33.333 10.11 0.00 0.00 3.41
5834 6286 9.503399 AACAGTAGTTTAAAAATACTCCCTCTG 57.497 33.333 10.11 0.00 33.11 3.35
5837 6289 9.636789 ACAAACAGTAGTTTAAAAATACTCCCT 57.363 29.630 10.11 0.00 45.80 4.20
6141 6593 0.601311 ACCTGCTCGACAACTTCTGC 60.601 55.000 0.00 0.00 0.00 4.26
6153 6605 5.376854 ACATACAAAATGTGAACCTGCTC 57.623 39.130 0.00 0.00 0.00 4.26
6329 6781 9.712305 GTCATGTACCTACAGCATAAATTAGAT 57.288 33.333 0.00 0.00 39.92 1.98
6374 6826 1.063649 CGCCATCAAGTGAGCATGC 59.936 57.895 10.51 10.51 0.00 4.06
6390 6842 5.203370 CAGCATATCTTTGATTTCTGACGC 58.797 41.667 0.00 0.00 0.00 5.19
6405 6857 5.673337 TCTTTCAATAACGCCAGCATATC 57.327 39.130 0.00 0.00 0.00 1.63
6540 6992 6.183360 GCAACTGTAACATCTATGGAAGCAAT 60.183 38.462 0.00 0.00 0.00 3.56
6564 7016 6.662414 TGTAATATTGTGTCAGCTAACAGC 57.338 37.500 0.00 0.00 42.84 4.40
6569 7021 9.710900 CCTCATTATGTAATATTGTGTCAGCTA 57.289 33.333 0.00 0.00 33.22 3.32
6570 7022 8.432013 TCCTCATTATGTAATATTGTGTCAGCT 58.568 33.333 0.00 0.00 33.22 4.24
6647 7123 9.117183 CAATCTATTCCACATCTCAAGATTCAA 57.883 33.333 0.00 0.00 31.61 2.69
6653 7129 7.730084 TCTACCAATCTATTCCACATCTCAAG 58.270 38.462 0.00 0.00 0.00 3.02
6705 7181 0.244450 CATGCACAAGCCAAATCGGT 59.756 50.000 0.00 0.00 41.13 4.69
6722 7198 4.883585 CCTATGGCTGTACACATTTCACAT 59.116 41.667 4.47 0.00 0.00 3.21
6823 7300 4.997395 AGTCGAAATGTTACAGAAGCATGT 59.003 37.500 0.00 0.00 37.19 3.21
6842 7319 2.802816 GGCTATCCAGTTATGCAAGTCG 59.197 50.000 0.00 0.00 0.00 4.18
7301 7786 6.686130 AATCGAACGATAACGGATACATTC 57.314 37.500 10.05 0.00 44.46 2.67
7308 7793 4.096231 TCCAGTAAATCGAACGATAACGGA 59.904 41.667 10.05 15.94 44.46 4.69
7321 7806 5.873179 TTCGGAATGTTGTCCAGTAAATC 57.127 39.130 0.00 0.00 37.56 2.17
7336 7821 4.093011 TGGATTGGTTGGAATTTCGGAAT 58.907 39.130 0.00 0.00 0.00 3.01
7339 7824 2.417243 GCTGGATTGGTTGGAATTTCGG 60.417 50.000 0.00 0.00 0.00 4.30
7394 7879 5.647658 AGCTTATTTCGTGAATCACCATGAA 59.352 36.000 7.91 3.11 39.50 2.57
7409 7894 8.391106 AGAATGACAAATCACGTAGCTTATTTC 58.609 33.333 0.00 0.00 37.79 2.17
7437 7922 4.724279 ATACAGGGGCTTACCATTTAGG 57.276 45.455 0.00 0.00 42.91 2.69
7564 8050 7.174946 CCCGTTATATCATGAGCCATTTTAAGT 59.825 37.037 0.09 0.00 0.00 2.24
7602 8088 6.377146 GGCAAATGTTTCCAGGAGATTAAGTA 59.623 38.462 0.00 0.00 0.00 2.24
7662 8148 4.357325 AGAAAGCTCCAGAGATCCACTAA 58.643 43.478 0.00 0.00 0.00 2.24
7698 8185 5.585390 ACAGCAATTTTCAGTCTTCAACAG 58.415 37.500 0.00 0.00 0.00 3.16
7707 8194 6.639563 ACTTTTGGTTACAGCAATTTTCAGT 58.360 32.000 0.00 0.00 35.34 3.41
7806 8311 7.752686 GCAGTAGATTTTTCAGAAAACTCATCC 59.247 37.037 21.72 12.14 37.56 3.51
7817 8322 5.934625 AGTAGTGGTGCAGTAGATTTTTCAG 59.065 40.000 0.00 0.00 0.00 3.02
7826 8331 7.268586 AGATATTTTGAGTAGTGGTGCAGTAG 58.731 38.462 0.00 0.00 0.00 2.57
7999 8504 1.128809 TTACCGGCCAGAACCTTCCA 61.129 55.000 0.00 0.00 0.00 3.53
8080 8585 9.734620 CAAATTCAGATCACTTTTGAGTGTAAA 57.265 29.630 6.46 0.00 40.45 2.01
8085 8590 6.015940 GGTCCAAATTCAGATCACTTTTGAGT 60.016 38.462 0.00 0.00 34.35 3.41
8196 8702 7.707035 AGCGAATGTAGAAACTTCATAGTTAGG 59.293 37.037 0.00 0.00 43.74 2.69
8208 8714 7.464358 ACATGATAAACAGCGAATGTAGAAAC 58.536 34.615 0.00 0.00 43.00 2.78
8229 8735 4.449068 GGTAACTCTTCGCCATATGACATG 59.551 45.833 3.65 0.00 0.00 3.21
8248 8754 2.504175 GGGCTCAGTGTATGGAAGGTAA 59.496 50.000 0.00 0.00 0.00 2.85
8361 8868 1.282930 GGACCGTGCAGTTCGAAGAC 61.283 60.000 0.00 0.00 34.32 3.01
8464 8971 9.244292 CCCTGTACTATCTATATACACACACAT 57.756 37.037 0.00 0.00 0.00 3.21
8481 9016 5.235850 TGTGAGAATTTTGCCCTGTACTA 57.764 39.130 0.00 0.00 0.00 1.82
8519 9054 2.897326 ACCTTGGGCCTTTGTATGAAAC 59.103 45.455 4.53 0.00 0.00 2.78
8565 9100 6.563010 GCATGACTCGCTCTGAATATGTTTAC 60.563 42.308 0.00 0.00 0.00 2.01
8582 9117 7.970061 TCTTAAAATACAATGCAAGCATGACTC 59.030 33.333 8.50 0.00 36.68 3.36
8585 9120 9.656040 ATTTCTTAAAATACAATGCAAGCATGA 57.344 25.926 8.50 0.00 33.58 3.07
8605 9140 6.312399 TCAAGCGATACAACAACATTTCTT 57.688 33.333 0.00 0.00 0.00 2.52
8640 9175 1.283793 CCCACAAGCAACTTCGCAG 59.716 57.895 0.00 0.00 0.00 5.18
8691 9228 2.744166 CGCATCTCCCACACTCATCATT 60.744 50.000 0.00 0.00 0.00 2.57
8699 9236 1.959042 ATCAATCGCATCTCCCACAC 58.041 50.000 0.00 0.00 0.00 3.82
8752 9289 4.849310 TTGCATCGCCGGTAGCCC 62.849 66.667 1.90 0.00 38.78 5.19
8753 9290 2.822255 TTTGCATCGCCGGTAGCC 60.822 61.111 1.90 0.00 38.78 3.93
8754 9291 2.395360 TGTTTGCATCGCCGGTAGC 61.395 57.895 1.90 2.71 38.52 3.58
8755 9292 1.423845 GTGTTTGCATCGCCGGTAG 59.576 57.895 1.90 0.00 0.00 3.18
8756 9293 2.384309 CGTGTTTGCATCGCCGGTA 61.384 57.895 1.90 0.00 0.00 4.02
8757 9294 3.722295 CGTGTTTGCATCGCCGGT 61.722 61.111 1.90 0.00 0.00 5.28
8758 9295 4.459331 CCGTGTTTGCATCGCCGG 62.459 66.667 0.00 0.00 0.00 6.13
8782 9319 3.250762 CACAGCCGAAATCTCTGTCAAAA 59.749 43.478 0.00 0.00 38.85 2.44
8796 9333 2.177394 TTGCTATCAAACACAGCCGA 57.823 45.000 0.00 0.00 34.31 5.54
8950 9487 9.202273 CAAAAAGTTAGGCAGCAAAATATACAA 57.798 29.630 0.00 0.00 0.00 2.41
9066 9603 0.461870 TGCCATCGCTGTCGCTAATT 60.462 50.000 0.00 0.00 35.36 1.40
9081 9618 1.559219 TGCCTAATTACTCTGCTGCCA 59.441 47.619 0.00 0.00 0.00 4.92
9088 9625 5.244178 CGGAGGTTATCTGCCTAATTACTCT 59.756 44.000 0.00 0.00 36.29 3.24
9191 9728 3.243941 TGTGGTATGATGCATACGGGTAC 60.244 47.826 0.00 0.00 45.24 3.34
9225 10118 1.886542 TCTGCTCAACAACTCGCTCTA 59.113 47.619 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.