Multiple sequence alignment - TraesCS1B01G374400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G374400 chr1B 100.000 2559 0 0 1 2559 604702451 604699893 0.000000e+00 4726.0
1 TraesCS1B01G374400 chr1B 94.985 678 25 4 1301 1976 604739802 604739132 0.000000e+00 1055.0
2 TraesCS1B01G374400 chr1B 94.690 678 27 5 1301 1976 604677655 604676985 0.000000e+00 1044.0
3 TraesCS1B01G374400 chr1B 89.306 720 67 6 128 844 254046777 254047489 0.000000e+00 894.0
4 TraesCS1B01G374400 chr1B 97.791 498 11 0 1203 1700 604746765 604746268 0.000000e+00 859.0
5 TraesCS1B01G374400 chr1B 97.531 243 6 0 949 1191 604740039 604739797 1.420000e-112 416.0
6 TraesCS1B01G374400 chr1B 97.119 243 7 0 949 1191 604677892 604677650 6.590000e-111 411.0
7 TraesCS1B01G374400 chr1D 88.372 817 65 15 949 1753 444730111 444729313 0.000000e+00 955.0
8 TraesCS1B01G374400 chr1D 88.372 817 65 15 949 1753 444789318 444788520 0.000000e+00 955.0
9 TraesCS1B01G374400 chr1D 90.816 490 41 2 949 1437 444630932 444630446 0.000000e+00 652.0
10 TraesCS1B01G374400 chr1D 80.983 773 98 24 949 1700 444524559 444523815 3.690000e-158 568.0
11 TraesCS1B01G374400 chr1D 94.862 253 13 0 1448 1700 444780781 444780529 1.850000e-106 396.0
12 TraesCS1B01G374400 chr1D 92.460 252 18 1 1503 1753 444630419 444630168 2.420000e-95 359.0
13 TraesCS1B01G374400 chr1D 90.336 238 13 6 1747 1975 444729286 444729050 1.150000e-78 303.0
14 TraesCS1B01G374400 chr1D 90.336 238 13 6 1747 1975 444788493 444788257 1.150000e-78 303.0
15 TraesCS1B01G374400 chr1D 89.552 134 9 4 835 966 444730516 444730386 5.660000e-37 165.0
16 TraesCS1B01G374400 chr1D 89.552 134 9 4 835 966 444789723 444789593 5.660000e-37 165.0
17 TraesCS1B01G374400 chr1D 96.226 53 2 0 1697 1749 444779303 444779251 1.260000e-13 87.9
18 TraesCS1B01G374400 chr3B 95.763 590 24 1 1971 2559 129752236 129752825 0.000000e+00 950.0
19 TraesCS1B01G374400 chr3B 95.578 588 25 1 1973 2559 263997288 263997875 0.000000e+00 941.0
20 TraesCS1B01G374400 chr3B 95.408 588 26 1 1973 2559 404466974 404467561 0.000000e+00 935.0
21 TraesCS1B01G374400 chr3B 90.071 141 12 2 1 140 21238511 21238650 5.620000e-42 182.0
22 TraesCS1B01G374400 chr3B 91.045 134 9 2 1 131 327050226 327050359 7.280000e-41 178.0
23 TraesCS1B01G374400 chr2B 95.571 587 26 0 1973 2559 486516567 486517153 0.000000e+00 941.0
24 TraesCS1B01G374400 chr2B 95.408 588 26 1 1973 2559 477012408 477011821 0.000000e+00 935.0
25 TraesCS1B01G374400 chr2B 86.067 689 81 10 152 836 279765466 279764789 0.000000e+00 726.0
26 TraesCS1B01G374400 chr6B 95.408 588 26 1 1973 2559 71825488 71826075 0.000000e+00 935.0
27 TraesCS1B01G374400 chr6B 94.915 118 6 0 1 118 687168125 687168242 4.350000e-43 185.0
28 TraesCS1B01G374400 chr6B 91.473 129 10 1 1 129 260605157 260605030 2.620000e-40 176.0
29 TraesCS1B01G374400 chr5B 95.408 588 26 1 1973 2559 6428824 6428237 0.000000e+00 935.0
30 TraesCS1B01G374400 chr5B 95.408 588 26 1 1973 2559 184160466 184159879 0.000000e+00 935.0
31 TraesCS1B01G374400 chr5B 84.388 711 91 13 125 832 542274316 542275009 0.000000e+00 680.0
32 TraesCS1B01G374400 chr5B 92.857 126 9 0 1 126 532936756 532936631 1.560000e-42 183.0
33 TraesCS1B01G374400 chr5B 91.538 130 7 1 1 126 158958951 158959080 2.620000e-40 176.0
34 TraesCS1B01G374400 chr4B 95.408 588 26 1 1973 2559 579384115 579383528 0.000000e+00 935.0
35 TraesCS1B01G374400 chr4A 89.645 705 63 6 135 836 225625518 225626215 0.000000e+00 889.0
36 TraesCS1B01G374400 chr6D 86.376 712 86 8 129 836 134709399 134708695 0.000000e+00 767.0
37 TraesCS1B01G374400 chr6D 85.955 712 87 9 129 836 134304161 134303459 0.000000e+00 749.0
38 TraesCS1B01G374400 chr7B 84.691 712 89 12 128 836 431290229 431290923 0.000000e+00 693.0
39 TraesCS1B01G374400 chr7B 92.857 126 9 0 1 126 744317678 744317803 1.560000e-42 183.0
40 TraesCS1B01G374400 chr7B 92.188 128 8 1 1 126 124023167 124023040 2.020000e-41 180.0
41 TraesCS1B01G374400 chr7D 84.432 713 89 14 128 836 103815553 103816247 0.000000e+00 682.0
42 TraesCS1B01G374400 chr2D 84.292 713 92 13 128 836 309815759 309815063 0.000000e+00 678.0
43 TraesCS1B01G374400 chr1A 91.002 489 41 1 949 1437 540124856 540124371 0.000000e+00 656.0
44 TraesCS1B01G374400 chr1A 91.388 209 10 2 1553 1753 540124258 540124050 1.940000e-71 279.0
45 TraesCS1B01G374400 chr1A 85.965 228 24 1 1757 1976 540124021 540123794 1.180000e-58 237.0
46 TraesCS1B01G374400 chr1A 88.235 119 13 1 835 953 540125245 540125128 9.550000e-30 141.0
47 TraesCS1B01G374400 chrUn 93.023 129 9 0 1 129 195377600 195377472 3.360000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G374400 chr1B 604699893 604702451 2558 True 4726.000000 4726 100.0000 1 2559 1 chr1B.!!$R1 2558
1 TraesCS1B01G374400 chr1B 254046777 254047489 712 False 894.000000 894 89.3060 128 844 1 chr1B.!!$F1 716
2 TraesCS1B01G374400 chr1B 604739132 604740039 907 True 735.500000 1055 96.2580 949 1976 2 chr1B.!!$R4 1027
3 TraesCS1B01G374400 chr1B 604676985 604677892 907 True 727.500000 1044 95.9045 949 1976 2 chr1B.!!$R3 1027
4 TraesCS1B01G374400 chr1D 444523815 444524559 744 True 568.000000 568 80.9830 949 1700 1 chr1D.!!$R1 751
5 TraesCS1B01G374400 chr1D 444630168 444630932 764 True 505.500000 652 91.6380 949 1753 2 chr1D.!!$R2 804
6 TraesCS1B01G374400 chr1D 444729050 444730516 1466 True 474.333333 955 89.4200 835 1975 3 chr1D.!!$R3 1140
7 TraesCS1B01G374400 chr1D 444788257 444789723 1466 True 474.333333 955 89.4200 835 1975 3 chr1D.!!$R5 1140
8 TraesCS1B01G374400 chr1D 444779251 444780781 1530 True 241.950000 396 95.5440 1448 1749 2 chr1D.!!$R4 301
9 TraesCS1B01G374400 chr3B 129752236 129752825 589 False 950.000000 950 95.7630 1971 2559 1 chr3B.!!$F2 588
10 TraesCS1B01G374400 chr3B 263997288 263997875 587 False 941.000000 941 95.5780 1973 2559 1 chr3B.!!$F3 586
11 TraesCS1B01G374400 chr3B 404466974 404467561 587 False 935.000000 935 95.4080 1973 2559 1 chr3B.!!$F5 586
12 TraesCS1B01G374400 chr2B 486516567 486517153 586 False 941.000000 941 95.5710 1973 2559 1 chr2B.!!$F1 586
13 TraesCS1B01G374400 chr2B 477011821 477012408 587 True 935.000000 935 95.4080 1973 2559 1 chr2B.!!$R2 586
14 TraesCS1B01G374400 chr2B 279764789 279765466 677 True 726.000000 726 86.0670 152 836 1 chr2B.!!$R1 684
15 TraesCS1B01G374400 chr6B 71825488 71826075 587 False 935.000000 935 95.4080 1973 2559 1 chr6B.!!$F1 586
16 TraesCS1B01G374400 chr5B 6428237 6428824 587 True 935.000000 935 95.4080 1973 2559 1 chr5B.!!$R1 586
17 TraesCS1B01G374400 chr5B 184159879 184160466 587 True 935.000000 935 95.4080 1973 2559 1 chr5B.!!$R2 586
18 TraesCS1B01G374400 chr5B 542274316 542275009 693 False 680.000000 680 84.3880 125 832 1 chr5B.!!$F2 707
19 TraesCS1B01G374400 chr4B 579383528 579384115 587 True 935.000000 935 95.4080 1973 2559 1 chr4B.!!$R1 586
20 TraesCS1B01G374400 chr4A 225625518 225626215 697 False 889.000000 889 89.6450 135 836 1 chr4A.!!$F1 701
21 TraesCS1B01G374400 chr6D 134708695 134709399 704 True 767.000000 767 86.3760 129 836 1 chr6D.!!$R2 707
22 TraesCS1B01G374400 chr6D 134303459 134304161 702 True 749.000000 749 85.9550 129 836 1 chr6D.!!$R1 707
23 TraesCS1B01G374400 chr7B 431290229 431290923 694 False 693.000000 693 84.6910 128 836 1 chr7B.!!$F1 708
24 TraesCS1B01G374400 chr7D 103815553 103816247 694 False 682.000000 682 84.4320 128 836 1 chr7D.!!$F1 708
25 TraesCS1B01G374400 chr2D 309815063 309815759 696 True 678.000000 678 84.2920 128 836 1 chr2D.!!$R1 708
26 TraesCS1B01G374400 chr1A 540123794 540125245 1451 True 328.250000 656 89.1475 835 1976 4 chr1A.!!$R1 1141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.107214 AGACTTGGGTGTGTGTGTGG 60.107 55.0 0.0 0.0 0.00 4.17 F
1495 1818 0.038892 CCAAGTGCAGGAATGTGTGC 60.039 55.0 0.0 0.0 40.29 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 1823 0.179034 CTATTGCACCCCTCAGCCTC 60.179 60.0 0.0 0.0 0.00 4.70 R
2333 3975 0.453390 CGGGAAGAAGCCAAAGCATC 59.547 55.0 0.0 0.0 43.56 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.889545 GCTCTCAGCAGAACCTTTGT 58.110 50.000 0.00 0.00 41.89 2.83
23 24 3.045601 GCTCTCAGCAGAACCTTTGTA 57.954 47.619 0.00 0.00 41.89 2.41
24 25 2.739379 GCTCTCAGCAGAACCTTTGTAC 59.261 50.000 0.00 0.00 41.89 2.90
25 26 3.556004 GCTCTCAGCAGAACCTTTGTACT 60.556 47.826 0.00 0.00 41.89 2.73
26 27 4.322049 GCTCTCAGCAGAACCTTTGTACTA 60.322 45.833 0.00 0.00 41.89 1.82
27 28 5.625656 GCTCTCAGCAGAACCTTTGTACTAT 60.626 44.000 0.00 0.00 41.89 2.12
28 29 5.724328 TCTCAGCAGAACCTTTGTACTATG 58.276 41.667 0.00 0.00 0.00 2.23
29 30 5.246203 TCTCAGCAGAACCTTTGTACTATGT 59.754 40.000 0.00 0.00 0.00 2.29
30 31 5.865085 TCAGCAGAACCTTTGTACTATGTT 58.135 37.500 0.00 0.00 0.00 2.71
31 32 5.700832 TCAGCAGAACCTTTGTACTATGTTG 59.299 40.000 0.00 0.00 0.00 3.33
32 33 5.470098 CAGCAGAACCTTTGTACTATGTTGT 59.530 40.000 0.00 0.00 0.00 3.32
33 34 5.470098 AGCAGAACCTTTGTACTATGTTGTG 59.530 40.000 10.60 10.60 34.44 3.33
34 35 5.468746 GCAGAACCTTTGTACTATGTTGTGA 59.531 40.000 15.74 0.00 33.49 3.58
35 36 6.347725 GCAGAACCTTTGTACTATGTTGTGAG 60.348 42.308 15.74 0.00 33.49 3.51
36 37 6.929049 CAGAACCTTTGTACTATGTTGTGAGA 59.071 38.462 9.85 0.00 33.49 3.27
37 38 6.929606 AGAACCTTTGTACTATGTTGTGAGAC 59.070 38.462 0.00 0.00 0.00 3.36
38 39 6.420913 ACCTTTGTACTATGTTGTGAGACT 57.579 37.500 0.00 0.00 0.00 3.24
39 40 6.827727 ACCTTTGTACTATGTTGTGAGACTT 58.172 36.000 0.00 0.00 0.00 3.01
40 41 6.706270 ACCTTTGTACTATGTTGTGAGACTTG 59.294 38.462 0.00 0.00 0.00 3.16
41 42 6.147821 CCTTTGTACTATGTTGTGAGACTTGG 59.852 42.308 0.00 0.00 0.00 3.61
42 43 5.147330 TGTACTATGTTGTGAGACTTGGG 57.853 43.478 0.00 0.00 0.00 4.12
43 44 4.591498 TGTACTATGTTGTGAGACTTGGGT 59.409 41.667 0.00 0.00 0.00 4.51
44 45 4.008074 ACTATGTTGTGAGACTTGGGTG 57.992 45.455 0.00 0.00 0.00 4.61
45 46 3.391296 ACTATGTTGTGAGACTTGGGTGT 59.609 43.478 0.00 0.00 0.00 4.16
46 47 2.036958 TGTTGTGAGACTTGGGTGTG 57.963 50.000 0.00 0.00 0.00 3.82
47 48 1.280710 TGTTGTGAGACTTGGGTGTGT 59.719 47.619 0.00 0.00 0.00 3.72
48 49 1.670811 GTTGTGAGACTTGGGTGTGTG 59.329 52.381 0.00 0.00 0.00 3.82
49 50 0.908910 TGTGAGACTTGGGTGTGTGT 59.091 50.000 0.00 0.00 0.00 3.72
50 51 1.299541 GTGAGACTTGGGTGTGTGTG 58.700 55.000 0.00 0.00 0.00 3.82
51 52 0.908910 TGAGACTTGGGTGTGTGTGT 59.091 50.000 0.00 0.00 0.00 3.72
52 53 1.299541 GAGACTTGGGTGTGTGTGTG 58.700 55.000 0.00 0.00 0.00 3.82
53 54 0.107214 AGACTTGGGTGTGTGTGTGG 60.107 55.000 0.00 0.00 0.00 4.17
54 55 0.107410 GACTTGGGTGTGTGTGTGGA 60.107 55.000 0.00 0.00 0.00 4.02
55 56 0.393808 ACTTGGGTGTGTGTGTGGAC 60.394 55.000 0.00 0.00 0.00 4.02
56 57 1.077357 TTGGGTGTGTGTGTGGACC 60.077 57.895 0.00 0.00 0.00 4.46
57 58 2.203294 GGGTGTGTGTGTGGACCC 60.203 66.667 0.00 0.00 41.43 4.46
58 59 2.590575 GGTGTGTGTGTGGACCCG 60.591 66.667 0.00 0.00 0.00 5.28
59 60 2.502093 GTGTGTGTGTGGACCCGA 59.498 61.111 0.00 0.00 0.00 5.14
60 61 1.885850 GTGTGTGTGTGGACCCGAC 60.886 63.158 0.00 0.00 0.00 4.79
61 62 2.061578 TGTGTGTGTGGACCCGACT 61.062 57.895 0.00 0.00 0.00 4.18
62 63 0.756070 TGTGTGTGTGGACCCGACTA 60.756 55.000 0.00 0.00 0.00 2.59
63 64 0.606604 GTGTGTGTGGACCCGACTAT 59.393 55.000 0.00 0.00 0.00 2.12
64 65 0.606096 TGTGTGTGGACCCGACTATG 59.394 55.000 0.00 0.00 0.00 2.23
65 66 0.606604 GTGTGTGGACCCGACTATGT 59.393 55.000 0.00 0.00 0.00 2.29
66 67 1.820519 GTGTGTGGACCCGACTATGTA 59.179 52.381 0.00 0.00 0.00 2.29
67 68 2.429610 GTGTGTGGACCCGACTATGTAT 59.570 50.000 0.00 0.00 0.00 2.29
68 69 2.429250 TGTGTGGACCCGACTATGTATG 59.571 50.000 0.00 0.00 0.00 2.39
69 70 2.429610 GTGTGGACCCGACTATGTATGT 59.570 50.000 0.00 0.00 0.00 2.29
70 71 2.429250 TGTGGACCCGACTATGTATGTG 59.571 50.000 0.00 0.00 0.00 3.21
71 72 2.429610 GTGGACCCGACTATGTATGTGT 59.570 50.000 0.00 0.00 0.00 3.72
72 73 2.429250 TGGACCCGACTATGTATGTGTG 59.571 50.000 0.00 0.00 0.00 3.82
73 74 2.470821 GACCCGACTATGTATGTGTGC 58.529 52.381 0.00 0.00 0.00 4.57
74 75 2.100916 GACCCGACTATGTATGTGTGCT 59.899 50.000 0.00 0.00 0.00 4.40
75 76 2.100916 ACCCGACTATGTATGTGTGCTC 59.899 50.000 0.00 0.00 0.00 4.26
76 77 2.362397 CCCGACTATGTATGTGTGCTCT 59.638 50.000 0.00 0.00 0.00 4.09
77 78 3.375642 CCGACTATGTATGTGTGCTCTG 58.624 50.000 0.00 0.00 0.00 3.35
78 79 3.181486 CCGACTATGTATGTGTGCTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
79 80 3.793492 CGACTATGTATGTGTGCTCTGTG 59.207 47.826 0.00 0.00 0.00 3.66
80 81 4.115516 GACTATGTATGTGTGCTCTGTGG 58.884 47.826 0.00 0.00 0.00 4.17
81 82 1.742761 ATGTATGTGTGCTCTGTGGC 58.257 50.000 0.00 0.00 0.00 5.01
82 83 0.670239 TGTATGTGTGCTCTGTGGCG 60.670 55.000 0.00 0.00 34.52 5.69
83 84 1.079197 TATGTGTGCTCTGTGGCGG 60.079 57.895 0.00 0.00 34.52 6.13
84 85 1.826340 TATGTGTGCTCTGTGGCGGT 61.826 55.000 0.00 0.00 34.52 5.68
85 86 2.591715 GTGTGCTCTGTGGCGGTT 60.592 61.111 0.00 0.00 34.52 4.44
86 87 2.186826 GTGTGCTCTGTGGCGGTTT 61.187 57.895 0.00 0.00 34.52 3.27
87 88 2.186160 TGTGCTCTGTGGCGGTTTG 61.186 57.895 0.00 0.00 34.52 2.93
88 89 3.286751 TGCTCTGTGGCGGTTTGC 61.287 61.111 0.00 0.00 45.38 3.68
89 90 2.980233 GCTCTGTGGCGGTTTGCT 60.980 61.111 0.00 0.00 45.43 3.91
90 91 2.555547 GCTCTGTGGCGGTTTGCTT 61.556 57.895 0.00 0.00 45.43 3.91
91 92 2.032981 CTCTGTGGCGGTTTGCTTT 58.967 52.632 0.00 0.00 45.43 3.51
92 93 1.234821 CTCTGTGGCGGTTTGCTTTA 58.765 50.000 0.00 0.00 45.43 1.85
93 94 1.812571 CTCTGTGGCGGTTTGCTTTAT 59.187 47.619 0.00 0.00 45.43 1.40
94 95 2.228822 CTCTGTGGCGGTTTGCTTTATT 59.771 45.455 0.00 0.00 45.43 1.40
95 96 2.625790 TCTGTGGCGGTTTGCTTTATTT 59.374 40.909 0.00 0.00 45.43 1.40
96 97 3.821600 TCTGTGGCGGTTTGCTTTATTTA 59.178 39.130 0.00 0.00 45.43 1.40
97 98 4.461081 TCTGTGGCGGTTTGCTTTATTTAT 59.539 37.500 0.00 0.00 45.43 1.40
98 99 5.648526 TCTGTGGCGGTTTGCTTTATTTATA 59.351 36.000 0.00 0.00 45.43 0.98
99 100 6.151312 TCTGTGGCGGTTTGCTTTATTTATAA 59.849 34.615 0.00 0.00 45.43 0.98
100 101 6.688578 TGTGGCGGTTTGCTTTATTTATAAA 58.311 32.000 0.00 0.00 45.43 1.40
110 111 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
111 112 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
112 113 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
146 147 8.605746 CGGTAATAATACGGAACTTTTTCATGA 58.394 33.333 0.00 0.00 35.08 3.07
387 394 6.183360 TGCAAACTTAGGTGAAAACTTCTCAG 60.183 38.462 0.00 0.00 0.00 3.35
474 481 4.220602 ACCATATTGTTCACCCTTTTGCTC 59.779 41.667 0.00 0.00 0.00 4.26
476 483 2.045561 TTGTTCACCCTTTTGCTCGA 57.954 45.000 0.00 0.00 0.00 4.04
490 497 7.484959 CCCTTTTGCTCGAATTTTGTAGATAAC 59.515 37.037 0.00 0.00 0.00 1.89
517 524 5.182001 CGAATGAACTTCTTCCAATCCTTGT 59.818 40.000 0.00 0.00 0.00 3.16
542 549 8.699749 GTTTCACCTGCATAAAAGTTTCATTAC 58.300 33.333 0.00 0.00 0.00 1.89
553 560 4.546829 AGTTTCATTACTGGCCGAAGTA 57.453 40.909 0.00 0.00 0.00 2.24
568 575 3.561725 CCGAAGTAATGAGCTCCAATTCC 59.438 47.826 12.15 0.00 0.00 3.01
595 602 2.494870 ACCTACGTTGGCGAGAATAAGT 59.505 45.455 16.31 0.00 42.00 2.24
600 607 3.065786 ACGTTGGCGAGAATAAGTATCGA 59.934 43.478 0.00 0.00 42.00 3.59
604 611 6.361481 CGTTGGCGAGAATAAGTATCGATTAA 59.639 38.462 1.71 0.00 41.33 1.40
663 670 0.244450 CGGATGCTTGTTGTGCCAAT 59.756 50.000 0.00 0.00 0.00 3.16
686 693 9.361315 CAATTCATTTGCTCTTCAATTGTCATA 57.639 29.630 5.13 0.00 37.34 2.15
799 806 8.237811 ACATTGATAACCCTTGGATATTTGTC 57.762 34.615 0.00 0.00 0.00 3.18
863 874 1.964223 AGTGTGACAGTCTGTGTAGGG 59.036 52.381 11.04 0.00 40.56 3.53
883 894 1.550327 CTCACAGAGGAGTGCTGGTA 58.450 55.000 0.00 0.00 39.35 3.25
921 932 7.812690 AGTCCGTTTTACTTCCATTTTAAGT 57.187 32.000 0.00 0.00 40.25 2.24
963 1268 6.959639 ACATATCCAAACAACTTCTTGTGT 57.040 33.333 0.00 0.00 39.88 3.72
996 1301 7.844493 AATTGATACATTCCCAGTATGCATT 57.156 32.000 3.54 0.00 32.60 3.56
1033 1338 2.082231 CAACTCATCCACTCAAGCAGG 58.918 52.381 0.00 0.00 0.00 4.85
1071 1376 0.538516 CACCAACCCCGAAACCATGA 60.539 55.000 0.00 0.00 0.00 3.07
1342 1656 4.742201 GAGCGTCGCCTTGAGCCA 62.742 66.667 14.86 0.00 38.78 4.75
1396 1710 0.391661 AAAGTCGATGCCGTGCTCAT 60.392 50.000 0.00 0.00 37.05 2.90
1444 1758 3.175240 CGCTTGTCTCGCAGTCGG 61.175 66.667 0.00 0.00 36.13 4.79
1446 1760 1.803519 GCTTGTCTCGCAGTCGGAG 60.804 63.158 0.00 0.00 36.13 4.63
1455 1778 1.371558 GCAGTCGGAGTTGGACCTT 59.628 57.895 0.00 0.00 34.97 3.50
1491 1814 1.546323 CCTCACCAAGTGCAGGAATGT 60.546 52.381 0.00 0.00 34.88 2.71
1492 1815 1.538512 CTCACCAAGTGCAGGAATGTG 59.461 52.381 0.00 0.00 32.98 3.21
1493 1816 1.133823 TCACCAAGTGCAGGAATGTGT 60.134 47.619 0.00 0.00 32.98 3.72
1494 1817 1.001048 CACCAAGTGCAGGAATGTGTG 60.001 52.381 0.00 0.00 0.00 3.82
1495 1818 0.038892 CCAAGTGCAGGAATGTGTGC 60.039 55.000 0.00 0.00 40.29 4.57
1496 1819 0.386352 CAAGTGCAGGAATGTGTGCG 60.386 55.000 0.00 0.00 42.96 5.34
1497 1820 0.534877 AAGTGCAGGAATGTGTGCGA 60.535 50.000 0.00 0.00 42.96 5.10
1498 1821 1.207593 GTGCAGGAATGTGTGCGAC 59.792 57.895 0.00 0.00 42.96 5.19
1499 1822 1.071299 TGCAGGAATGTGTGCGACT 59.929 52.632 0.00 0.00 42.96 4.18
1500 1823 1.229975 TGCAGGAATGTGTGCGACTG 61.230 55.000 0.00 0.00 42.96 3.51
1501 1824 0.950555 GCAGGAATGTGTGCGACTGA 60.951 55.000 0.00 0.00 0.00 3.41
1613 1976 1.193203 CTTATCCATCGATGCACACGC 59.807 52.381 20.25 0.00 39.24 5.34
1754 3386 2.808543 GTGGGCTTCTAGTCACAGTTTG 59.191 50.000 0.00 0.00 0.00 2.93
1769 3401 3.951037 ACAGTTTGCCAAGTGTCATTGTA 59.049 39.130 5.20 0.00 42.01 2.41
1788 3420 5.012328 TGTAACCGTTGCAAAAATTTCCT 57.988 34.783 0.00 0.00 0.00 3.36
1899 3540 2.165641 ACACTTGATCACGGCGAATAGA 59.834 45.455 16.62 6.21 0.00 1.98
1977 3618 7.223584 TGTCCAATACAGAAAGATCACAAAGA 58.776 34.615 0.00 0.00 33.01 2.52
2086 3727 2.279851 CCATTCCCGACGCGCATA 60.280 61.111 5.73 0.00 0.00 3.14
2195 3836 3.431905 CCAGGAGCTACTACGAGTACTGA 60.432 52.174 0.00 0.00 28.26 3.41
2258 3899 0.321298 GTTGCCGGCCTTCTTGTCTA 60.321 55.000 26.77 0.00 0.00 2.59
2326 3968 2.829741 AAAGCACTCAGTCTCAGGTC 57.170 50.000 0.00 0.00 0.00 3.85
2333 3975 0.609406 TCAGTCTCAGGTCTGGGTCG 60.609 60.000 0.00 0.00 31.64 4.79
2487 4129 1.323271 TGATCTCCACCTCCGCTGAC 61.323 60.000 0.00 0.00 0.00 3.51
2507 4149 6.899393 TGACTTCAGCATTGAAAATACCTT 57.101 33.333 0.00 0.00 42.48 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.246203 ACATAGTACAAAGGTTCTGCTGAGA 59.754 40.000 0.00 0.00 0.00 3.27
6 7 5.482908 ACATAGTACAAAGGTTCTGCTGAG 58.517 41.667 0.00 0.00 0.00 3.35
7 8 5.483685 ACATAGTACAAAGGTTCTGCTGA 57.516 39.130 0.00 0.00 0.00 4.26
8 9 5.470098 ACAACATAGTACAAAGGTTCTGCTG 59.530 40.000 0.00 0.00 0.00 4.41
9 10 5.470098 CACAACATAGTACAAAGGTTCTGCT 59.530 40.000 0.00 0.00 0.00 4.24
10 11 5.468746 TCACAACATAGTACAAAGGTTCTGC 59.531 40.000 0.00 0.00 0.00 4.26
11 12 6.929049 TCTCACAACATAGTACAAAGGTTCTG 59.071 38.462 0.00 0.00 0.00 3.02
12 13 6.929606 GTCTCACAACATAGTACAAAGGTTCT 59.070 38.462 0.00 0.00 0.00 3.01
13 14 6.929606 AGTCTCACAACATAGTACAAAGGTTC 59.070 38.462 0.00 0.00 0.00 3.62
14 15 6.827727 AGTCTCACAACATAGTACAAAGGTT 58.172 36.000 0.00 0.00 0.00 3.50
15 16 6.420913 AGTCTCACAACATAGTACAAAGGT 57.579 37.500 0.00 0.00 0.00 3.50
16 17 6.147821 CCAAGTCTCACAACATAGTACAAAGG 59.852 42.308 0.00 0.00 0.00 3.11
17 18 6.147821 CCCAAGTCTCACAACATAGTACAAAG 59.852 42.308 0.00 0.00 0.00 2.77
18 19 5.995282 CCCAAGTCTCACAACATAGTACAAA 59.005 40.000 0.00 0.00 0.00 2.83
19 20 5.071250 ACCCAAGTCTCACAACATAGTACAA 59.929 40.000 0.00 0.00 0.00 2.41
20 21 4.591498 ACCCAAGTCTCACAACATAGTACA 59.409 41.667 0.00 0.00 0.00 2.90
21 22 4.929808 CACCCAAGTCTCACAACATAGTAC 59.070 45.833 0.00 0.00 0.00 2.73
22 23 4.591498 ACACCCAAGTCTCACAACATAGTA 59.409 41.667 0.00 0.00 0.00 1.82
23 24 3.391296 ACACCCAAGTCTCACAACATAGT 59.609 43.478 0.00 0.00 0.00 2.12
24 25 3.748048 CACACCCAAGTCTCACAACATAG 59.252 47.826 0.00 0.00 0.00 2.23
25 26 3.135712 ACACACCCAAGTCTCACAACATA 59.864 43.478 0.00 0.00 0.00 2.29
26 27 2.092429 ACACACCCAAGTCTCACAACAT 60.092 45.455 0.00 0.00 0.00 2.71
27 28 1.280710 ACACACCCAAGTCTCACAACA 59.719 47.619 0.00 0.00 0.00 3.33
28 29 1.670811 CACACACCCAAGTCTCACAAC 59.329 52.381 0.00 0.00 0.00 3.32
29 30 1.280710 ACACACACCCAAGTCTCACAA 59.719 47.619 0.00 0.00 0.00 3.33
30 31 0.908910 ACACACACCCAAGTCTCACA 59.091 50.000 0.00 0.00 0.00 3.58
31 32 1.299541 CACACACACCCAAGTCTCAC 58.700 55.000 0.00 0.00 0.00 3.51
32 33 0.908910 ACACACACACCCAAGTCTCA 59.091 50.000 0.00 0.00 0.00 3.27
33 34 1.299541 CACACACACACCCAAGTCTC 58.700 55.000 0.00 0.00 0.00 3.36
34 35 0.107214 CCACACACACACCCAAGTCT 60.107 55.000 0.00 0.00 0.00 3.24
35 36 0.107410 TCCACACACACACCCAAGTC 60.107 55.000 0.00 0.00 0.00 3.01
36 37 0.393808 GTCCACACACACACCCAAGT 60.394 55.000 0.00 0.00 0.00 3.16
37 38 1.101049 GGTCCACACACACACCCAAG 61.101 60.000 0.00 0.00 0.00 3.61
38 39 1.077357 GGTCCACACACACACCCAA 60.077 57.895 0.00 0.00 0.00 4.12
39 40 2.592864 GGTCCACACACACACCCA 59.407 61.111 0.00 0.00 0.00 4.51
40 41 2.203294 GGGTCCACACACACACCC 60.203 66.667 0.00 0.00 41.93 4.61
41 42 2.590575 CGGGTCCACACACACACC 60.591 66.667 0.00 0.00 0.00 4.16
42 43 1.885850 GTCGGGTCCACACACACAC 60.886 63.158 0.00 0.00 0.00 3.82
43 44 0.756070 TAGTCGGGTCCACACACACA 60.756 55.000 0.00 0.00 0.00 3.72
44 45 0.606604 ATAGTCGGGTCCACACACAC 59.393 55.000 0.00 0.00 0.00 3.82
45 46 0.606096 CATAGTCGGGTCCACACACA 59.394 55.000 0.00 0.00 0.00 3.72
46 47 0.606604 ACATAGTCGGGTCCACACAC 59.393 55.000 0.00 0.00 0.00 3.82
47 48 2.219080 TACATAGTCGGGTCCACACA 57.781 50.000 0.00 0.00 0.00 3.72
48 49 2.429610 ACATACATAGTCGGGTCCACAC 59.570 50.000 0.00 0.00 0.00 3.82
49 50 2.429250 CACATACATAGTCGGGTCCACA 59.571 50.000 0.00 0.00 0.00 4.17
50 51 2.429610 ACACATACATAGTCGGGTCCAC 59.570 50.000 0.00 0.00 0.00 4.02
51 52 2.429250 CACACATACATAGTCGGGTCCA 59.571 50.000 0.00 0.00 0.00 4.02
52 53 2.802057 GCACACATACATAGTCGGGTCC 60.802 54.545 0.00 0.00 0.00 4.46
53 54 2.100916 AGCACACATACATAGTCGGGTC 59.899 50.000 0.00 0.00 0.00 4.46
54 55 2.100916 GAGCACACATACATAGTCGGGT 59.899 50.000 0.00 0.00 0.00 5.28
55 56 2.362397 AGAGCACACATACATAGTCGGG 59.638 50.000 0.00 0.00 0.00 5.14
56 57 3.181486 ACAGAGCACACATACATAGTCGG 60.181 47.826 0.00 0.00 0.00 4.79
57 58 3.793492 CACAGAGCACACATACATAGTCG 59.207 47.826 0.00 0.00 0.00 4.18
58 59 4.115516 CCACAGAGCACACATACATAGTC 58.884 47.826 0.00 0.00 0.00 2.59
59 60 3.679917 GCCACAGAGCACACATACATAGT 60.680 47.826 0.00 0.00 0.00 2.12
60 61 2.868583 GCCACAGAGCACACATACATAG 59.131 50.000 0.00 0.00 0.00 2.23
61 62 2.738321 CGCCACAGAGCACACATACATA 60.738 50.000 0.00 0.00 0.00 2.29
62 63 1.742761 GCCACAGAGCACACATACAT 58.257 50.000 0.00 0.00 0.00 2.29
63 64 0.670239 CGCCACAGAGCACACATACA 60.670 55.000 0.00 0.00 0.00 2.29
64 65 1.361668 CCGCCACAGAGCACACATAC 61.362 60.000 0.00 0.00 0.00 2.39
65 66 1.079197 CCGCCACAGAGCACACATA 60.079 57.895 0.00 0.00 0.00 2.29
66 67 2.359107 CCGCCACAGAGCACACAT 60.359 61.111 0.00 0.00 0.00 3.21
67 68 2.884997 AAACCGCCACAGAGCACACA 62.885 55.000 0.00 0.00 0.00 3.72
68 69 2.186826 AAACCGCCACAGAGCACAC 61.187 57.895 0.00 0.00 0.00 3.82
69 70 2.186160 CAAACCGCCACAGAGCACA 61.186 57.895 0.00 0.00 0.00 4.57
70 71 2.639286 CAAACCGCCACAGAGCAC 59.361 61.111 0.00 0.00 0.00 4.40
71 72 3.286751 GCAAACCGCCACAGAGCA 61.287 61.111 0.00 0.00 32.94 4.26
72 73 2.075426 AAAGCAAACCGCCACAGAGC 62.075 55.000 0.00 0.00 44.04 4.09
73 74 1.234821 TAAAGCAAACCGCCACAGAG 58.765 50.000 0.00 0.00 44.04 3.35
74 75 1.904287 ATAAAGCAAACCGCCACAGA 58.096 45.000 0.00 0.00 44.04 3.41
75 76 2.723124 AATAAAGCAAACCGCCACAG 57.277 45.000 0.00 0.00 44.04 3.66
76 77 4.792521 ATAAATAAAGCAAACCGCCACA 57.207 36.364 0.00 0.00 44.04 4.17
77 78 7.216920 CTTTATAAATAAAGCAAACCGCCAC 57.783 36.000 9.01 0.00 41.69 5.01
89 90 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
90 91 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
91 92 3.251487 GCTTTCGCCCCGCTTTATAAATA 59.749 43.478 0.00 0.00 0.00 1.40
92 93 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
93 94 1.402613 GCTTTCGCCCCGCTTTATAAA 59.597 47.619 0.00 0.00 0.00 1.40
94 95 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
95 96 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
96 97 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
104 105 7.735295 ATTATTACCGATAAAGGCTTTCGCCC 61.735 42.308 17.13 3.52 43.20 6.13
105 106 5.180680 ATTATTACCGATAAAGGCTTTCGCC 59.819 40.000 17.13 5.98 42.87 5.54
106 107 5.662211 TTATTACCGATAAAGGCTTTCGC 57.338 39.130 17.13 8.73 33.69 4.70
107 108 7.411157 CCGTATTATTACCGATAAAGGCTTTCG 60.411 40.741 17.13 14.79 34.06 3.46
108 109 7.599998 TCCGTATTATTACCGATAAAGGCTTTC 59.400 37.037 17.13 1.90 34.06 2.62
109 110 7.444299 TCCGTATTATTACCGATAAAGGCTTT 58.556 34.615 17.76 17.76 34.06 3.51
110 111 6.996509 TCCGTATTATTACCGATAAAGGCTT 58.003 36.000 0.00 0.00 34.06 4.35
111 112 6.594788 TCCGTATTATTACCGATAAAGGCT 57.405 37.500 0.00 0.00 34.06 4.58
112 113 6.870439 AGTTCCGTATTATTACCGATAAAGGC 59.130 38.462 0.00 0.00 34.06 4.35
113 114 8.822652 AAGTTCCGTATTATTACCGATAAAGG 57.177 34.615 0.00 0.00 34.06 3.11
117 118 9.814899 TGAAAAAGTTCCGTATTATTACCGATA 57.185 29.630 0.00 0.00 32.28 2.92
118 119 8.721019 TGAAAAAGTTCCGTATTATTACCGAT 57.279 30.769 0.00 0.00 32.28 4.18
119 120 8.605746 CATGAAAAAGTTCCGTATTATTACCGA 58.394 33.333 0.00 0.00 32.28 4.69
120 121 8.605746 TCATGAAAAAGTTCCGTATTATTACCG 58.394 33.333 0.00 0.00 32.28 4.02
126 127 9.443323 TGATCTTCATGAAAAAGTTCCGTATTA 57.557 29.630 9.88 0.00 32.28 0.98
146 147 8.599624 ATGGTATCAAATGGAAAAGTGATCTT 57.400 30.769 0.00 0.00 32.99 2.40
225 228 2.381589 GCACACTAGTTTTGCCGAAAC 58.618 47.619 13.30 0.00 46.42 2.78
248 252 7.653311 AGAACAAACTCCATGCAAGTTATTTTC 59.347 33.333 10.92 12.23 35.96 2.29
335 340 3.938963 GAGGTCAAACAAGCAATATCCGA 59.061 43.478 0.00 0.00 0.00 4.55
336 341 3.941483 AGAGGTCAAACAAGCAATATCCG 59.059 43.478 0.00 0.00 0.00 4.18
339 344 6.626623 GCATCAAGAGGTCAAACAAGCAATAT 60.627 38.462 0.00 0.00 0.00 1.28
387 394 8.784043 ACTTTATCACCAGATTGTTACAGAAAC 58.216 33.333 0.00 0.00 35.81 2.78
393 400 7.681939 TGGAACTTTATCACCAGATTGTTAC 57.318 36.000 0.00 0.00 35.67 2.50
425 432 5.509163 CGGAGGACGGTTTTGAGATACATAT 60.509 44.000 0.00 0.00 39.42 1.78
426 433 4.202080 CGGAGGACGGTTTTGAGATACATA 60.202 45.833 0.00 0.00 39.42 2.29
427 434 3.430374 CGGAGGACGGTTTTGAGATACAT 60.430 47.826 0.00 0.00 39.42 2.29
428 435 2.094390 CGGAGGACGGTTTTGAGATACA 60.094 50.000 0.00 0.00 39.42 2.29
474 481 7.680982 TCATTCGTGGTTATCTACAAAATTCG 58.319 34.615 0.00 0.00 0.00 3.34
476 483 9.010029 AGTTCATTCGTGGTTATCTACAAAATT 57.990 29.630 0.00 0.00 0.00 1.82
490 497 4.142600 GGATTGGAAGAAGTTCATTCGTGG 60.143 45.833 5.50 0.00 43.16 4.94
517 524 8.637986 AGTAATGAAACTTTTATGCAGGTGAAA 58.362 29.630 0.00 0.00 0.00 2.69
542 549 1.576356 GAGCTCATTACTTCGGCCAG 58.424 55.000 9.40 0.00 0.00 4.85
553 560 0.257039 AGGCGGAATTGGAGCTCATT 59.743 50.000 17.19 7.57 0.00 2.57
568 575 3.790177 GCCAACGTAGGTAAGGCG 58.210 61.111 13.91 0.00 37.61 5.52
663 670 9.577110 GAATATGACAATTGAAGAGCAAATGAA 57.423 29.630 13.59 0.00 39.27 2.57
799 806 3.000322 GGTGATTCGTTATGAGAAGTGCG 60.000 47.826 0.00 0.00 0.00 5.34
863 874 1.079266 CCAGCACTCCTCTGTGAGC 60.079 63.158 0.00 0.00 40.12 4.26
883 894 1.902432 GGACTACCCGCTAGCCGAT 60.902 63.158 9.66 0.00 40.02 4.18
921 932 8.984764 GGATATGTAAGCGAACATACATAAACA 58.015 33.333 14.06 0.00 42.82 2.83
927 938 6.819146 TGTTTGGATATGTAAGCGAACATACA 59.181 34.615 14.06 8.24 43.28 2.29
963 1268 8.723365 ACTGGGAATGTATCAATTTATAGGACA 58.277 33.333 0.00 0.00 0.00 4.02
1033 1338 1.221414 GGTGGCTATTGTCGCAGATC 58.779 55.000 0.00 0.00 40.67 2.75
1071 1376 2.683933 AAGGACGCGGGAGGACAT 60.684 61.111 12.47 0.00 0.00 3.06
1317 1631 2.049063 GGCGACGCTCAGACAGTT 60.049 61.111 20.77 0.00 0.00 3.16
1342 1656 0.748005 GCCAACACGGACATATGCCT 60.748 55.000 1.58 0.00 36.56 4.75
1376 1690 1.014044 TGAGCACGGCATCGACTTTC 61.014 55.000 0.00 0.00 40.11 2.62
1411 1725 1.516603 GCGTGGTCTAAGAGGCGAC 60.517 63.158 0.00 0.00 0.00 5.19
1444 1758 1.376037 CGAGGCCAAGGTCCAACTC 60.376 63.158 5.01 0.00 0.00 3.01
1446 1760 3.056328 GCGAGGCCAAGGTCCAAC 61.056 66.667 5.01 0.00 0.00 3.77
1477 1800 0.386352 CGCACACATTCCTGCACTTG 60.386 55.000 0.00 0.00 32.57 3.16
1491 1814 2.653115 CTCAGCCTCAGTCGCACA 59.347 61.111 0.00 0.00 0.00 4.57
1492 1815 2.125753 CCTCAGCCTCAGTCGCAC 60.126 66.667 0.00 0.00 0.00 5.34
1493 1816 3.385384 CCCTCAGCCTCAGTCGCA 61.385 66.667 0.00 0.00 0.00 5.10
1494 1817 4.154347 CCCCTCAGCCTCAGTCGC 62.154 72.222 0.00 0.00 0.00 5.19
1495 1818 2.681778 ACCCCTCAGCCTCAGTCG 60.682 66.667 0.00 0.00 0.00 4.18
1496 1819 2.985456 CACCCCTCAGCCTCAGTC 59.015 66.667 0.00 0.00 0.00 3.51
1497 1820 3.325753 GCACCCCTCAGCCTCAGT 61.326 66.667 0.00 0.00 0.00 3.41
1498 1821 2.207501 ATTGCACCCCTCAGCCTCAG 62.208 60.000 0.00 0.00 0.00 3.35
1499 1822 0.913934 TATTGCACCCCTCAGCCTCA 60.914 55.000 0.00 0.00 0.00 3.86
1500 1823 0.179034 CTATTGCACCCCTCAGCCTC 60.179 60.000 0.00 0.00 0.00 4.70
1501 1824 1.639635 CCTATTGCACCCCTCAGCCT 61.640 60.000 0.00 0.00 0.00 4.58
1613 1976 1.448365 TAGCAGCAGCCATGACACG 60.448 57.895 0.00 0.00 43.56 4.49
1754 3386 1.877443 ACGGTTACAATGACACTTGGC 59.123 47.619 0.00 0.00 0.00 4.52
1769 3401 4.130286 TGAGGAAATTTTTGCAACGGTT 57.870 36.364 0.00 0.00 0.00 4.44
1788 3420 0.247460 AGCGCTACAGCTTGTGATGA 59.753 50.000 8.99 0.00 46.80 2.92
1899 3540 2.639065 TCTCCTGCAACAACTTTCGTT 58.361 42.857 0.00 0.00 0.00 3.85
1999 3640 6.782986 ACCTACGGGATTAGTTTTAAACCTT 58.217 36.000 4.01 0.00 33.47 3.50
2166 3807 3.117776 TCGTAGTAGCTCCTGGGTATTCA 60.118 47.826 0.00 0.00 0.00 2.57
2167 3808 3.484407 TCGTAGTAGCTCCTGGGTATTC 58.516 50.000 0.00 0.00 0.00 1.75
2258 3899 2.028385 CGGAACTGCCCAAGTACTTAGT 60.028 50.000 8.04 5.36 38.56 2.24
2326 3968 0.962356 AAGCCAAAGCATCGACCCAG 60.962 55.000 0.00 0.00 43.56 4.45
2333 3975 0.453390 CGGGAAGAAGCCAAAGCATC 59.547 55.000 0.00 0.00 43.56 3.91
2450 4092 5.776744 AGATCAAAAAGGAACATCAAGTGC 58.223 37.500 0.00 0.00 0.00 4.40
2487 4129 7.630242 TCCTAAGGTATTTTCAATGCTGAAG 57.370 36.000 0.00 0.00 42.48 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.