Multiple sequence alignment - TraesCS1B01G373600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G373600 chr1B 100.000 3506 0 0 1 3506 604149087 604145582 0.000000e+00 6475.0
1 TraesCS1B01G373600 chr1B 85.877 439 50 7 3079 3506 603769589 603769152 1.150000e-124 457.0
2 TraesCS1B01G373600 chr1B 92.642 299 20 1 246 542 204398332 204398630 2.500000e-116 429.0
3 TraesCS1B01G373600 chr1B 80.000 380 51 9 3134 3506 49842400 49842039 1.250000e-64 257.0
4 TraesCS1B01G373600 chr1B 95.385 65 2 1 527 591 529442409 529442472 6.190000e-18 102.0
5 TraesCS1B01G373600 chr1A 92.776 2727 139 29 686 3384 539902133 539899437 0.000000e+00 3892.0
6 TraesCS1B01G373600 chr1A 93.266 297 17 2 248 542 571547434 571547729 5.370000e-118 435.0
7 TraesCS1B01G373600 chr1D 92.846 2516 137 24 1014 3506 444152483 444149988 0.000000e+00 3609.0
8 TraesCS1B01G373600 chr1D 86.700 406 17 15 631 1018 444153213 444152827 1.950000e-112 416.0
9 TraesCS1B01G373600 chr1D 82.838 437 57 6 3082 3506 31333011 31332581 3.300000e-100 375.0
10 TraesCS1B01G373600 chr1D 79.355 310 48 9 3206 3506 31345824 31345522 1.650000e-48 204.0
11 TraesCS1B01G373600 chr1D 93.750 64 4 0 1199 1262 292665300 292665237 2.880000e-16 97.1
12 TraesCS1B01G373600 chr7B 90.490 347 26 4 248 591 516345428 516345770 5.340000e-123 451.0
13 TraesCS1B01G373600 chr7A 89.916 357 23 3 248 591 66232647 66232291 6.900000e-122 448.0
14 TraesCS1B01G373600 chr7A 100.000 30 0 0 52 81 652543625 652543596 4.890000e-04 56.5
15 TraesCS1B01G373600 chr5B 89.306 346 35 1 248 591 619292427 619292772 1.930000e-117 433.0
16 TraesCS1B01G373600 chr5B 94.366 71 2 2 528 598 380813550 380813618 1.330000e-19 108.0
17 TraesCS1B01G373600 chr6B 92.642 299 19 2 246 542 42312915 42313212 8.990000e-116 427.0
18 TraesCS1B01G373600 chr6B 88.515 357 28 2 248 591 33490581 33490225 1.500000e-113 420.0
19 TraesCS1B01G373600 chrUn 87.749 351 35 3 248 591 215460019 215459670 1.520000e-108 403.0
20 TraesCS1B01G373600 chr3B 86.538 364 41 5 242 598 422372768 422373130 9.120000e-106 394.0
21 TraesCS1B01G373600 chr3B 81.218 394 55 9 3082 3465 214556537 214556921 2.050000e-77 300.0
22 TraesCS1B01G373600 chr3D 82.308 390 49 8 3091 3468 147825082 147824701 1.570000e-83 320.0
23 TraesCS1B01G373600 chr3D 82.178 101 13 5 1165 1262 17590942 17590844 8.070000e-12 82.4
24 TraesCS1B01G373600 chr3A 79.412 442 66 9 3082 3506 165337615 165338048 4.430000e-74 289.0
25 TraesCS1B01G373600 chr4B 77.262 431 73 10 3089 3504 73483350 73483770 2.720000e-56 230.0
26 TraesCS1B01G373600 chr2B 86.441 177 19 4 4 180 690733731 690733560 4.620000e-44 189.0
27 TraesCS1B01G373600 chr2B 92.063 63 5 0 188 250 690733516 690733454 4.820000e-14 89.8
28 TraesCS1B01G373600 chr7D 94.030 67 4 0 1196 1262 308588225 308588291 6.190000e-18 102.0
29 TraesCS1B01G373600 chr4A 92.958 71 4 1 528 598 518815136 518815067 6.190000e-18 102.0
30 TraesCS1B01G373600 chr5D 91.549 71 6 0 180 250 514292582 514292512 8.010000e-17 99.0
31 TraesCS1B01G373600 chr5A 91.549 71 6 0 180 250 642500661 642500591 8.010000e-17 99.0
32 TraesCS1B01G373600 chr2D 89.024 82 6 1 1181 1262 260026061 260025983 8.010000e-17 99.0
33 TraesCS1B01G373600 chr2D 97.619 42 1 0 1223 1264 157119624 157119665 4.850000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G373600 chr1B 604145582 604149087 3505 True 6475.0 6475 100.000 1 3506 1 chr1B.!!$R3 3505
1 TraesCS1B01G373600 chr1A 539899437 539902133 2696 True 3892.0 3892 92.776 686 3384 1 chr1A.!!$R1 2698
2 TraesCS1B01G373600 chr1D 444149988 444153213 3225 True 2012.5 3609 89.773 631 3506 2 chr1D.!!$R4 2875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 397 0.036388 AAATCAAGCTCGAAGCCCGA 60.036 50.0 0.00 0.0 43.77 5.14 F
620 621 0.036765 ATTTTCCTGGCAGACGCGTA 60.037 50.0 17.94 0.0 39.92 4.42 F
1623 2008 0.108992 TGCACAACGGGATCGAGTAC 60.109 55.0 0.00 0.0 40.11 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2328 2713 0.107800 CAGACATCCCTGGAGTGCTG 60.108 60.0 0.0 2.46 0.0 4.41 R
2472 2857 0.898326 TCGCCAGCTTAGTCCACTCA 60.898 55.0 0.0 0.00 0.0 3.41 R
2927 3323 0.105246 CTCCCCAGGACCAGAGCTAT 60.105 60.0 0.0 0.00 0.0 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.719538 CAACTATGTTTCAAAATGTAAAGGCG 58.280 34.615 0.00 0.00 0.00 5.52
26 27 7.209471 ACTATGTTTCAAAATGTAAAGGCGA 57.791 32.000 0.00 0.00 0.00 5.54
27 28 7.653647 ACTATGTTTCAAAATGTAAAGGCGAA 58.346 30.769 0.00 0.00 0.00 4.70
28 29 8.138712 ACTATGTTTCAAAATGTAAAGGCGAAA 58.861 29.630 0.00 0.00 0.00 3.46
29 30 7.778470 ATGTTTCAAAATGTAAAGGCGAAAA 57.222 28.000 0.00 0.00 0.00 2.29
30 31 7.596749 TGTTTCAAAATGTAAAGGCGAAAAA 57.403 28.000 0.00 0.00 0.00 1.94
48 49 2.422276 AAAAATCTCGCAACACTGCC 57.578 45.000 0.00 0.00 46.56 4.85
49 50 1.609208 AAAATCTCGCAACACTGCCT 58.391 45.000 0.00 0.00 46.56 4.75
50 51 2.472695 AAATCTCGCAACACTGCCTA 57.527 45.000 0.00 0.00 46.56 3.93
51 52 2.698855 AATCTCGCAACACTGCCTAT 57.301 45.000 0.00 0.00 46.56 2.57
52 53 1.945387 ATCTCGCAACACTGCCTATG 58.055 50.000 0.00 0.00 46.56 2.23
53 54 0.608130 TCTCGCAACACTGCCTATGT 59.392 50.000 0.00 0.00 46.56 2.29
54 55 1.001974 TCTCGCAACACTGCCTATGTT 59.998 47.619 0.00 0.00 46.56 2.71
61 62 4.605640 AACACTGCCTATGTTGCAAAAT 57.394 36.364 7.40 7.40 38.84 1.82
62 63 4.605640 ACACTGCCTATGTTGCAAAATT 57.394 36.364 7.58 0.00 38.46 1.82
63 64 4.559153 ACACTGCCTATGTTGCAAAATTC 58.441 39.130 7.58 0.00 38.46 2.17
64 65 3.928375 CACTGCCTATGTTGCAAAATTCC 59.072 43.478 7.58 0.00 38.46 3.01
65 66 3.834231 ACTGCCTATGTTGCAAAATTCCT 59.166 39.130 7.58 0.00 38.46 3.36
66 67 4.082026 ACTGCCTATGTTGCAAAATTCCTC 60.082 41.667 7.58 0.00 38.46 3.71
67 68 3.195396 TGCCTATGTTGCAAAATTCCTCC 59.805 43.478 7.58 0.00 35.40 4.30
68 69 3.430790 GCCTATGTTGCAAAATTCCTCCC 60.431 47.826 7.58 0.00 0.00 4.30
69 70 3.181487 CCTATGTTGCAAAATTCCTCCCG 60.181 47.826 7.58 0.00 0.00 5.14
70 71 0.316841 TGTTGCAAAATTCCTCCCGC 59.683 50.000 0.00 0.00 0.00 6.13
71 72 0.316841 GTTGCAAAATTCCTCCCGCA 59.683 50.000 0.00 0.00 0.00 5.69
72 73 1.043816 TTGCAAAATTCCTCCCGCAA 58.956 45.000 0.00 0.00 37.05 4.85
73 74 0.316841 TGCAAAATTCCTCCCGCAAC 59.683 50.000 0.00 0.00 0.00 4.17
74 75 0.316841 GCAAAATTCCTCCCGCAACA 59.683 50.000 0.00 0.00 0.00 3.33
75 76 1.066929 GCAAAATTCCTCCCGCAACAT 60.067 47.619 0.00 0.00 0.00 2.71
76 77 2.879826 CAAAATTCCTCCCGCAACATC 58.120 47.619 0.00 0.00 0.00 3.06
77 78 2.214376 AAATTCCTCCCGCAACATCA 57.786 45.000 0.00 0.00 0.00 3.07
78 79 2.442236 AATTCCTCCCGCAACATCAT 57.558 45.000 0.00 0.00 0.00 2.45
79 80 1.972872 ATTCCTCCCGCAACATCATC 58.027 50.000 0.00 0.00 0.00 2.92
80 81 0.911769 TTCCTCCCGCAACATCATCT 59.088 50.000 0.00 0.00 0.00 2.90
81 82 1.788229 TCCTCCCGCAACATCATCTA 58.212 50.000 0.00 0.00 0.00 1.98
82 83 2.329267 TCCTCCCGCAACATCATCTAT 58.671 47.619 0.00 0.00 0.00 1.98
83 84 2.037641 TCCTCCCGCAACATCATCTATG 59.962 50.000 0.00 0.00 41.74 2.23
113 114 7.835634 AAAAAGGTGCAGACGAAAATTAAAA 57.164 28.000 0.00 0.00 0.00 1.52
114 115 7.835634 AAAAGGTGCAGACGAAAATTAAAAA 57.164 28.000 0.00 0.00 0.00 1.94
150 151 5.635549 AATAACGCTTTCAGTGTTTTTGC 57.364 34.783 7.94 0.00 45.72 3.68
151 152 2.645730 ACGCTTTCAGTGTTTTTGCA 57.354 40.000 0.00 0.00 34.94 4.08
152 153 2.953020 ACGCTTTCAGTGTTTTTGCAA 58.047 38.095 0.00 0.00 34.94 4.08
153 154 2.666022 ACGCTTTCAGTGTTTTTGCAAC 59.334 40.909 0.00 0.00 34.94 4.17
154 155 2.665537 CGCTTTCAGTGTTTTTGCAACA 59.334 40.909 0.00 0.00 0.00 3.33
155 156 3.122613 CGCTTTCAGTGTTTTTGCAACAA 59.877 39.130 0.00 0.00 31.20 2.83
156 157 4.376819 CGCTTTCAGTGTTTTTGCAACAAA 60.377 37.500 0.00 0.48 31.20 2.83
157 158 5.081394 GCTTTCAGTGTTTTTGCAACAAAG 58.919 37.500 0.00 0.00 31.20 2.77
158 159 4.660352 TTCAGTGTTTTTGCAACAAAGC 57.340 36.364 0.00 0.00 31.20 3.51
159 160 3.924144 TCAGTGTTTTTGCAACAAAGCT 58.076 36.364 0.00 0.00 34.99 3.74
160 161 3.679025 TCAGTGTTTTTGCAACAAAGCTG 59.321 39.130 17.39 17.39 34.99 4.24
161 162 2.416202 AGTGTTTTTGCAACAAAGCTGC 59.584 40.909 0.00 0.00 40.35 5.25
162 163 2.416202 GTGTTTTTGCAACAAAGCTGCT 59.584 40.909 0.00 0.00 40.59 4.24
163 164 2.415857 TGTTTTTGCAACAAAGCTGCTG 59.584 40.909 1.35 0.00 40.59 4.41
164 165 1.008329 TTTTGCAACAAAGCTGCTGC 58.992 45.000 1.35 7.62 43.61 5.25
180 181 2.182791 GCTGCAGAGCGAGCTACA 59.817 61.111 20.43 0.00 34.87 2.74
181 182 1.227205 GCTGCAGAGCGAGCTACAT 60.227 57.895 20.43 0.00 34.87 2.29
182 183 1.214373 GCTGCAGAGCGAGCTACATC 61.214 60.000 20.43 0.00 34.87 3.06
183 184 0.933973 CTGCAGAGCGAGCTACATCG 60.934 60.000 8.42 0.00 45.48 3.84
184 185 1.659954 GCAGAGCGAGCTACATCGG 60.660 63.158 0.00 0.00 42.94 4.18
185 186 1.007964 CAGAGCGAGCTACATCGGG 60.008 63.158 0.00 0.00 42.94 5.14
186 187 2.196925 AGAGCGAGCTACATCGGGG 61.197 63.158 0.00 0.00 42.94 5.73
187 188 2.123854 AGCGAGCTACATCGGGGA 60.124 61.111 0.00 0.00 42.94 4.81
188 189 2.136196 GAGCGAGCTACATCGGGGAG 62.136 65.000 0.00 0.00 42.94 4.30
189 190 2.194212 GCGAGCTACATCGGGGAGA 61.194 63.158 0.00 0.00 42.94 3.71
190 191 1.528292 GCGAGCTACATCGGGGAGAT 61.528 60.000 0.00 0.00 42.94 2.75
191 192 0.523966 CGAGCTACATCGGGGAGATC 59.476 60.000 0.00 0.00 37.52 2.75
192 193 1.884497 CGAGCTACATCGGGGAGATCT 60.884 57.143 0.00 0.00 37.52 2.75
193 194 1.543802 GAGCTACATCGGGGAGATCTG 59.456 57.143 0.00 0.00 37.52 2.90
194 195 1.145945 AGCTACATCGGGGAGATCTGA 59.854 52.381 0.00 0.00 37.52 3.27
195 196 1.271102 GCTACATCGGGGAGATCTGAC 59.729 57.143 0.00 0.00 37.52 3.51
196 197 1.537638 CTACATCGGGGAGATCTGACG 59.462 57.143 0.00 1.57 37.52 4.35
197 198 1.109920 ACATCGGGGAGATCTGACGG 61.110 60.000 0.00 0.00 37.52 4.79
198 199 2.203771 ATCGGGGAGATCTGACGGC 61.204 63.158 0.00 0.00 33.45 5.68
199 200 2.648613 ATCGGGGAGATCTGACGGCT 62.649 60.000 0.00 0.00 33.45 5.52
200 201 1.528542 CGGGGAGATCTGACGGCTA 60.529 63.158 0.00 0.00 0.00 3.93
201 202 0.896019 CGGGGAGATCTGACGGCTAT 60.896 60.000 0.00 0.00 0.00 2.97
202 203 1.613520 CGGGGAGATCTGACGGCTATA 60.614 57.143 0.00 0.00 0.00 1.31
203 204 2.741145 GGGGAGATCTGACGGCTATAT 58.259 52.381 0.00 0.00 0.00 0.86
204 205 2.428890 GGGGAGATCTGACGGCTATATG 59.571 54.545 0.00 0.00 0.00 1.78
205 206 3.093057 GGGAGATCTGACGGCTATATGT 58.907 50.000 0.00 0.00 0.00 2.29
206 207 3.119316 GGGAGATCTGACGGCTATATGTG 60.119 52.174 0.00 0.00 0.00 3.21
207 208 3.119316 GGAGATCTGACGGCTATATGTGG 60.119 52.174 0.00 0.00 0.00 4.17
208 209 2.232452 AGATCTGACGGCTATATGTGGC 59.768 50.000 0.00 0.00 0.00 5.01
209 210 1.704641 TCTGACGGCTATATGTGGCT 58.295 50.000 0.00 0.00 31.62 4.75
210 211 1.613925 TCTGACGGCTATATGTGGCTC 59.386 52.381 0.00 0.00 31.62 4.70
211 212 1.341209 CTGACGGCTATATGTGGCTCA 59.659 52.381 0.00 0.00 31.62 4.26
212 213 1.760029 TGACGGCTATATGTGGCTCAA 59.240 47.619 0.00 0.00 31.62 3.02
213 214 2.368548 TGACGGCTATATGTGGCTCAAT 59.631 45.455 0.00 0.00 31.62 2.57
214 215 2.996621 GACGGCTATATGTGGCTCAATC 59.003 50.000 0.00 0.00 31.62 2.67
215 216 2.289694 ACGGCTATATGTGGCTCAATCC 60.290 50.000 0.00 0.00 31.62 3.01
216 217 2.289631 CGGCTATATGTGGCTCAATCCA 60.290 50.000 0.00 0.00 31.62 3.41
217 218 3.754965 GGCTATATGTGGCTCAATCCAA 58.245 45.455 0.00 0.00 37.96 3.53
218 219 4.338879 GGCTATATGTGGCTCAATCCAAT 58.661 43.478 0.00 0.00 37.96 3.16
219 220 4.157289 GGCTATATGTGGCTCAATCCAATG 59.843 45.833 0.00 0.00 37.96 2.82
220 221 4.157289 GCTATATGTGGCTCAATCCAATGG 59.843 45.833 0.00 0.00 37.96 3.16
221 222 1.117150 ATGTGGCTCAATCCAATGGC 58.883 50.000 0.00 0.00 37.96 4.40
222 223 1.314534 TGTGGCTCAATCCAATGGCG 61.315 55.000 0.00 0.00 37.96 5.69
223 224 2.414594 GGCTCAATCCAATGGCGC 59.585 61.111 0.00 0.00 0.00 6.53
224 225 2.025156 GCTCAATCCAATGGCGCG 59.975 61.111 0.00 0.00 0.00 6.86
225 226 2.717485 CTCAATCCAATGGCGCGG 59.283 61.111 8.83 0.00 0.00 6.46
226 227 2.828095 TCAATCCAATGGCGCGGG 60.828 61.111 8.83 0.00 0.00 6.13
227 228 2.828095 CAATCCAATGGCGCGGGA 60.828 61.111 8.83 5.75 34.70 5.14
228 229 2.516930 AATCCAATGGCGCGGGAG 60.517 61.111 8.83 0.00 33.47 4.30
229 230 4.569180 ATCCAATGGCGCGGGAGG 62.569 66.667 8.83 7.83 33.47 4.30
237 238 4.162690 GCGCGGGAGGAGGTTGAT 62.163 66.667 8.83 0.00 0.00 2.57
238 239 2.202932 CGCGGGAGGAGGTTGATG 60.203 66.667 0.00 0.00 0.00 3.07
239 240 2.990479 GCGGGAGGAGGTTGATGT 59.010 61.111 0.00 0.00 0.00 3.06
240 241 1.299976 GCGGGAGGAGGTTGATGTT 59.700 57.895 0.00 0.00 0.00 2.71
241 242 0.744771 GCGGGAGGAGGTTGATGTTC 60.745 60.000 0.00 0.00 0.00 3.18
242 243 0.905357 CGGGAGGAGGTTGATGTTCT 59.095 55.000 0.00 0.00 0.00 3.01
243 244 1.134670 CGGGAGGAGGTTGATGTTCTC 60.135 57.143 0.00 0.00 0.00 2.87
244 245 1.909302 GGGAGGAGGTTGATGTTCTCA 59.091 52.381 0.00 0.00 0.00 3.27
245 246 2.305927 GGGAGGAGGTTGATGTTCTCAA 59.694 50.000 0.00 0.00 41.61 3.02
246 247 3.054065 GGGAGGAGGTTGATGTTCTCAAT 60.054 47.826 0.00 0.00 45.36 2.57
247 248 4.568592 GGGAGGAGGTTGATGTTCTCAATT 60.569 45.833 0.00 0.00 45.36 2.32
248 249 5.339200 GGGAGGAGGTTGATGTTCTCAATTA 60.339 44.000 0.00 0.00 45.36 1.40
249 250 6.180472 GGAGGAGGTTGATGTTCTCAATTAA 58.820 40.000 0.00 0.00 45.36 1.40
250 251 6.659242 GGAGGAGGTTGATGTTCTCAATTAAA 59.341 38.462 0.00 0.00 45.36 1.52
251 252 7.362142 GGAGGAGGTTGATGTTCTCAATTAAAC 60.362 40.741 0.00 0.00 45.36 2.01
252 253 6.434340 AGGAGGTTGATGTTCTCAATTAAACC 59.566 38.462 0.00 0.00 45.36 3.27
253 254 6.254281 AGGTTGATGTTCTCAATTAAACCG 57.746 37.500 0.00 0.00 45.36 4.44
254 255 5.183140 AGGTTGATGTTCTCAATTAAACCGG 59.817 40.000 0.00 0.00 45.36 5.28
255 256 5.399013 GTTGATGTTCTCAATTAAACCGGG 58.601 41.667 6.32 0.00 45.36 5.73
256 257 4.013728 TGATGTTCTCAATTAAACCGGGG 58.986 43.478 6.32 0.00 0.00 5.73
257 258 2.164338 TGTTCTCAATTAAACCGGGGC 58.836 47.619 6.32 0.00 0.00 5.80
258 259 2.164338 GTTCTCAATTAAACCGGGGCA 58.836 47.619 6.32 0.00 0.00 5.36
259 260 2.559231 GTTCTCAATTAAACCGGGGCAA 59.441 45.455 6.32 0.00 0.00 4.52
260 261 2.877866 TCTCAATTAAACCGGGGCAAA 58.122 42.857 6.32 0.00 0.00 3.68
261 262 2.559231 TCTCAATTAAACCGGGGCAAAC 59.441 45.455 6.32 0.00 0.00 2.93
262 263 1.269998 TCAATTAAACCGGGGCAAACG 59.730 47.619 6.32 0.00 0.00 3.60
263 264 1.000052 CAATTAAACCGGGGCAAACGT 60.000 47.619 6.32 0.00 0.00 3.99
264 265 0.883153 ATTAAACCGGGGCAAACGTC 59.117 50.000 6.32 0.00 0.00 4.34
265 266 1.505477 TTAAACCGGGGCAAACGTCG 61.505 55.000 6.32 0.00 0.00 5.12
295 296 3.638316 TTTCGGGCCGGGCTTGTA 61.638 61.111 28.80 11.81 0.00 2.41
296 297 3.193469 TTTCGGGCCGGGCTTGTAA 62.193 57.895 28.80 16.98 0.00 2.41
297 298 2.693896 TTTCGGGCCGGGCTTGTAAA 62.694 55.000 28.80 18.44 0.00 2.01
298 299 2.673687 CGGGCCGGGCTTGTAAAA 60.674 61.111 28.80 0.00 0.00 1.52
299 300 2.696759 CGGGCCGGGCTTGTAAAAG 61.697 63.158 28.80 5.53 0.00 2.27
300 301 2.571757 GGCCGGGCTTGTAAAAGC 59.428 61.111 22.87 9.32 44.76 3.51
307 308 2.942641 GCTTGTAAAAGCCCGACCT 58.057 52.632 6.34 0.00 39.81 3.85
308 309 1.244816 GCTTGTAAAAGCCCGACCTT 58.755 50.000 6.34 0.00 39.81 3.50
309 310 1.199327 GCTTGTAAAAGCCCGACCTTC 59.801 52.381 6.34 0.00 39.81 3.46
310 311 2.500229 CTTGTAAAAGCCCGACCTTCA 58.500 47.619 0.00 0.00 0.00 3.02
311 312 2.871096 TGTAAAAGCCCGACCTTCAT 57.129 45.000 0.00 0.00 0.00 2.57
312 313 3.149005 TGTAAAAGCCCGACCTTCATT 57.851 42.857 0.00 0.00 0.00 2.57
313 314 3.492337 TGTAAAAGCCCGACCTTCATTT 58.508 40.909 0.00 0.00 0.00 2.32
314 315 3.504520 TGTAAAAGCCCGACCTTCATTTC 59.495 43.478 0.00 0.00 0.00 2.17
315 316 2.586648 AAAGCCCGACCTTCATTTCT 57.413 45.000 0.00 0.00 0.00 2.52
316 317 2.115343 AAGCCCGACCTTCATTTCTC 57.885 50.000 0.00 0.00 0.00 2.87
317 318 0.984230 AGCCCGACCTTCATTTCTCA 59.016 50.000 0.00 0.00 0.00 3.27
318 319 1.351017 AGCCCGACCTTCATTTCTCAA 59.649 47.619 0.00 0.00 0.00 3.02
319 320 1.740025 GCCCGACCTTCATTTCTCAAG 59.260 52.381 0.00 0.00 0.00 3.02
320 321 1.740025 CCCGACCTTCATTTCTCAAGC 59.260 52.381 0.00 0.00 0.00 4.01
321 322 1.740025 CCGACCTTCATTTCTCAAGCC 59.260 52.381 0.00 0.00 0.00 4.35
322 323 1.740025 CGACCTTCATTTCTCAAGCCC 59.260 52.381 0.00 0.00 0.00 5.19
323 324 1.740025 GACCTTCATTTCTCAAGCCCG 59.260 52.381 0.00 0.00 0.00 6.13
324 325 1.351017 ACCTTCATTTCTCAAGCCCGA 59.649 47.619 0.00 0.00 0.00 5.14
325 326 2.012673 CCTTCATTTCTCAAGCCCGAG 58.987 52.381 0.00 0.00 0.00 4.63
326 327 1.399791 CTTCATTTCTCAAGCCCGAGC 59.600 52.381 0.00 0.00 40.32 5.03
327 328 0.392998 TCATTTCTCAAGCCCGAGCC 60.393 55.000 0.00 0.00 41.25 4.70
328 329 1.077429 ATTTCTCAAGCCCGAGCCC 60.077 57.895 0.00 0.00 41.25 5.19
329 330 1.852157 ATTTCTCAAGCCCGAGCCCA 61.852 55.000 0.00 0.00 41.25 5.36
330 331 2.469465 TTTCTCAAGCCCGAGCCCAG 62.469 60.000 0.00 0.00 41.25 4.45
343 344 4.033776 CCCAGCCCGAAGCCTGAA 62.034 66.667 0.00 0.00 45.47 3.02
344 345 2.034066 CCAGCCCGAAGCCTGAAA 59.966 61.111 0.00 0.00 45.47 2.69
345 346 1.379044 CCAGCCCGAAGCCTGAAAT 60.379 57.895 0.00 0.00 45.47 2.17
346 347 0.107214 CCAGCCCGAAGCCTGAAATA 60.107 55.000 0.00 0.00 45.47 1.40
347 348 1.017387 CAGCCCGAAGCCTGAAATAC 58.983 55.000 0.00 0.00 45.47 1.89
348 349 0.912486 AGCCCGAAGCCTGAAATACT 59.088 50.000 0.00 0.00 45.47 2.12
349 350 1.134371 AGCCCGAAGCCTGAAATACTC 60.134 52.381 0.00 0.00 45.47 2.59
350 351 1.954927 CCCGAAGCCTGAAATACTCC 58.045 55.000 0.00 0.00 0.00 3.85
351 352 1.475213 CCCGAAGCCTGAAATACTCCC 60.475 57.143 0.00 0.00 0.00 4.30
352 353 1.486726 CCGAAGCCTGAAATACTCCCT 59.513 52.381 0.00 0.00 0.00 4.20
353 354 2.555199 CGAAGCCTGAAATACTCCCTG 58.445 52.381 0.00 0.00 0.00 4.45
354 355 2.168521 CGAAGCCTGAAATACTCCCTGA 59.831 50.000 0.00 0.00 0.00 3.86
355 356 3.181461 CGAAGCCTGAAATACTCCCTGAT 60.181 47.826 0.00 0.00 0.00 2.90
356 357 4.684485 CGAAGCCTGAAATACTCCCTGATT 60.684 45.833 0.00 0.00 0.00 2.57
357 358 4.870021 AGCCTGAAATACTCCCTGATTT 57.130 40.909 0.00 0.00 0.00 2.17
358 359 4.786425 AGCCTGAAATACTCCCTGATTTC 58.214 43.478 0.00 0.00 40.80 2.17
359 360 4.228210 AGCCTGAAATACTCCCTGATTTCA 59.772 41.667 9.10 9.10 45.34 2.69
360 361 4.949856 GCCTGAAATACTCCCTGATTTCAA 59.050 41.667 10.32 0.00 46.23 2.69
361 362 5.418840 GCCTGAAATACTCCCTGATTTCAAA 59.581 40.000 10.32 0.00 46.23 2.69
362 363 6.625960 GCCTGAAATACTCCCTGATTTCAAAC 60.626 42.308 10.32 3.64 46.23 2.93
363 364 6.127619 CCTGAAATACTCCCTGATTTCAAACC 60.128 42.308 10.32 0.00 46.23 3.27
364 365 5.714806 TGAAATACTCCCTGATTTCAAACCC 59.285 40.000 7.41 0.00 44.84 4.11
365 366 2.200373 ACTCCCTGATTTCAAACCCG 57.800 50.000 0.00 0.00 0.00 5.28
366 367 1.702957 ACTCCCTGATTTCAAACCCGA 59.297 47.619 0.00 0.00 0.00 5.14
367 368 2.290323 ACTCCCTGATTTCAAACCCGAG 60.290 50.000 0.00 0.00 0.00 4.63
368 369 0.811281 CCCTGATTTCAAACCCGAGC 59.189 55.000 0.00 0.00 0.00 5.03
369 370 0.811281 CCTGATTTCAAACCCGAGCC 59.189 55.000 0.00 0.00 0.00 4.70
370 371 0.811281 CTGATTTCAAACCCGAGCCC 59.189 55.000 0.00 0.00 0.00 5.19
371 372 0.958382 TGATTTCAAACCCGAGCCCG 60.958 55.000 0.00 0.00 0.00 6.13
382 383 4.483243 GAGCCCGGCCCGAAATCA 62.483 66.667 3.71 0.00 0.00 2.57
383 384 3.987954 GAGCCCGGCCCGAAATCAA 62.988 63.158 3.71 0.00 0.00 2.57
384 385 3.518068 GCCCGGCCCGAAATCAAG 61.518 66.667 3.71 0.00 0.00 3.02
385 386 3.518068 CCCGGCCCGAAATCAAGC 61.518 66.667 3.71 0.00 0.00 4.01
386 387 2.438434 CCGGCCCGAAATCAAGCT 60.438 61.111 3.71 0.00 0.00 3.74
387 388 2.472909 CCGGCCCGAAATCAAGCTC 61.473 63.158 3.71 0.00 0.00 4.09
388 389 2.813179 CGGCCCGAAATCAAGCTCG 61.813 63.158 0.00 0.00 34.83 5.03
389 390 1.449601 GGCCCGAAATCAAGCTCGA 60.450 57.895 0.00 0.00 37.23 4.04
390 391 1.024579 GGCCCGAAATCAAGCTCGAA 61.025 55.000 0.00 0.00 37.23 3.71
391 392 0.375106 GCCCGAAATCAAGCTCGAAG 59.625 55.000 0.00 0.00 37.23 3.79
392 393 0.375106 CCCGAAATCAAGCTCGAAGC 59.625 55.000 0.00 0.00 42.84 3.86
393 394 0.375106 CCGAAATCAAGCTCGAAGCC 59.625 55.000 0.00 0.00 43.77 4.35
394 395 0.375106 CGAAATCAAGCTCGAAGCCC 59.625 55.000 0.00 0.00 43.77 5.19
395 396 0.375106 GAAATCAAGCTCGAAGCCCG 59.625 55.000 0.00 0.00 43.77 6.13
396 397 0.036388 AAATCAAGCTCGAAGCCCGA 60.036 50.000 0.00 0.00 43.77 5.14
403 404 4.752879 TCGAAGCCCGAAAGCCCG 62.753 66.667 0.00 0.00 45.43 6.13
441 442 5.554822 TTTAATACATGGACGTGAAAGCC 57.445 39.130 0.00 0.00 0.00 4.35
442 443 3.350219 AATACATGGACGTGAAAGCCT 57.650 42.857 0.00 0.00 0.00 4.58
443 444 2.093306 TACATGGACGTGAAAGCCTG 57.907 50.000 0.00 0.00 0.00 4.85
444 445 0.606401 ACATGGACGTGAAAGCCTGG 60.606 55.000 0.00 0.00 0.00 4.45
445 446 1.675641 ATGGACGTGAAAGCCTGGC 60.676 57.895 11.65 11.65 0.00 4.85
446 447 3.056328 GGACGTGAAAGCCTGGCC 61.056 66.667 16.57 0.00 0.00 5.36
447 448 3.056328 GACGTGAAAGCCTGGCCC 61.056 66.667 16.57 5.70 0.00 5.80
449 450 4.697756 CGTGAAAGCCTGGCCCGA 62.698 66.667 16.57 0.00 0.00 5.14
450 451 2.282180 GTGAAAGCCTGGCCCGAA 60.282 61.111 16.57 0.00 0.00 4.30
451 452 2.034066 TGAAAGCCTGGCCCGAAG 59.966 61.111 16.57 0.00 0.00 3.79
452 453 3.443925 GAAAGCCTGGCCCGAAGC 61.444 66.667 16.57 0.00 42.60 3.86
470 471 3.299190 CCGAAAGCCCGGCCAAAA 61.299 61.111 5.55 0.00 43.25 2.44
471 472 2.731374 CGAAAGCCCGGCCAAAAA 59.269 55.556 5.55 0.00 0.00 1.94
472 473 1.291906 CGAAAGCCCGGCCAAAAAT 59.708 52.632 5.55 0.00 0.00 1.82
473 474 0.528470 CGAAAGCCCGGCCAAAAATA 59.472 50.000 5.55 0.00 0.00 1.40
474 475 1.469079 CGAAAGCCCGGCCAAAAATAG 60.469 52.381 5.55 0.00 0.00 1.73
475 476 1.822371 GAAAGCCCGGCCAAAAATAGA 59.178 47.619 5.55 0.00 0.00 1.98
476 477 1.931635 AAGCCCGGCCAAAAATAGAA 58.068 45.000 5.55 0.00 0.00 2.10
477 478 1.931635 AGCCCGGCCAAAAATAGAAA 58.068 45.000 5.55 0.00 0.00 2.52
478 479 2.252714 AGCCCGGCCAAAAATAGAAAA 58.747 42.857 5.55 0.00 0.00 2.29
479 480 2.635427 AGCCCGGCCAAAAATAGAAAAA 59.365 40.909 5.55 0.00 0.00 1.94
480 481 3.000041 GCCCGGCCAAAAATAGAAAAAG 59.000 45.455 2.24 0.00 0.00 2.27
481 482 3.306433 GCCCGGCCAAAAATAGAAAAAGA 60.306 43.478 2.24 0.00 0.00 2.52
482 483 4.494484 CCCGGCCAAAAATAGAAAAAGAG 58.506 43.478 2.24 0.00 0.00 2.85
483 484 4.219725 CCCGGCCAAAAATAGAAAAAGAGA 59.780 41.667 2.24 0.00 0.00 3.10
484 485 5.279256 CCCGGCCAAAAATAGAAAAAGAGAA 60.279 40.000 2.24 0.00 0.00 2.87
485 486 5.863935 CCGGCCAAAAATAGAAAAAGAGAAG 59.136 40.000 2.24 0.00 0.00 2.85
486 487 5.346011 CGGCCAAAAATAGAAAAAGAGAAGC 59.654 40.000 2.24 0.00 0.00 3.86
487 488 5.639506 GGCCAAAAATAGAAAAAGAGAAGCC 59.360 40.000 0.00 0.00 0.00 4.35
488 489 5.639506 GCCAAAAATAGAAAAAGAGAAGCCC 59.360 40.000 0.00 0.00 0.00 5.19
489 490 5.863935 CCAAAAATAGAAAAAGAGAAGCCCG 59.136 40.000 0.00 0.00 0.00 6.13
490 491 6.294508 CCAAAAATAGAAAAAGAGAAGCCCGA 60.295 38.462 0.00 0.00 0.00 5.14
491 492 6.502136 AAAATAGAAAAAGAGAAGCCCGAG 57.498 37.500 0.00 0.00 0.00 4.63
492 493 1.814793 AGAAAAAGAGAAGCCCGAGC 58.185 50.000 0.00 0.00 40.32 5.03
493 494 0.805614 GAAAAAGAGAAGCCCGAGCC 59.194 55.000 0.00 0.00 41.25 4.70
494 495 0.609406 AAAAAGAGAAGCCCGAGCCC 60.609 55.000 0.00 0.00 41.25 5.19
495 496 2.804828 AAAAGAGAAGCCCGAGCCCG 62.805 60.000 0.00 0.00 41.25 6.13
505 506 3.458163 CGAGCCCGGCCTGAACTA 61.458 66.667 5.55 0.00 0.00 2.24
506 507 2.187163 GAGCCCGGCCTGAACTAC 59.813 66.667 5.55 0.00 0.00 2.73
507 508 2.606519 AGCCCGGCCTGAACTACA 60.607 61.111 5.55 0.00 0.00 2.74
508 509 1.972660 GAGCCCGGCCTGAACTACAT 61.973 60.000 5.55 0.00 0.00 2.29
509 510 1.077716 GCCCGGCCTGAACTACATT 60.078 57.895 0.00 0.00 0.00 2.71
510 511 0.679960 GCCCGGCCTGAACTACATTT 60.680 55.000 0.00 0.00 0.00 2.32
511 512 1.379527 CCCGGCCTGAACTACATTTC 58.620 55.000 0.00 0.00 0.00 2.17
512 513 1.006832 CCGGCCTGAACTACATTTCG 58.993 55.000 0.00 0.00 0.00 3.46
513 514 1.006832 CGGCCTGAACTACATTTCGG 58.993 55.000 0.00 0.00 0.00 4.30
516 517 2.403252 CCTGAACTACATTTCGGGCT 57.597 50.000 0.00 0.00 43.57 5.19
517 518 2.009774 CCTGAACTACATTTCGGGCTG 58.990 52.381 0.00 0.00 43.57 4.85
518 519 1.398390 CTGAACTACATTTCGGGCTGC 59.602 52.381 0.00 0.00 0.00 5.25
519 520 1.271108 TGAACTACATTTCGGGCTGCA 60.271 47.619 0.50 0.00 0.00 4.41
520 521 1.810151 GAACTACATTTCGGGCTGCAA 59.190 47.619 0.50 0.00 0.00 4.08
521 522 1.904287 ACTACATTTCGGGCTGCAAA 58.096 45.000 0.50 0.00 0.00 3.68
522 523 2.235016 ACTACATTTCGGGCTGCAAAA 58.765 42.857 0.50 0.00 0.00 2.44
523 524 2.030274 ACTACATTTCGGGCTGCAAAAC 60.030 45.455 0.50 0.00 0.00 2.43
524 525 0.749649 ACATTTCGGGCTGCAAAACA 59.250 45.000 0.50 0.00 0.00 2.83
525 526 1.137872 ACATTTCGGGCTGCAAAACAA 59.862 42.857 0.50 0.00 0.00 2.83
526 527 2.208431 CATTTCGGGCTGCAAAACAAA 58.792 42.857 0.50 0.00 0.00 2.83
527 528 1.933247 TTTCGGGCTGCAAAACAAAG 58.067 45.000 0.50 0.00 0.00 2.77
528 529 0.529555 TTCGGGCTGCAAAACAAAGC 60.530 50.000 0.50 0.00 36.17 3.51
531 532 3.628958 GCTGCAAAACAAAGCCCG 58.371 55.556 0.00 0.00 0.00 6.13
532 533 1.067250 GCTGCAAAACAAAGCCCGA 59.933 52.632 0.00 0.00 0.00 5.14
533 534 0.940991 GCTGCAAAACAAAGCCCGAG 60.941 55.000 0.00 0.00 0.00 4.63
534 535 0.940991 CTGCAAAACAAAGCCCGAGC 60.941 55.000 0.00 0.00 40.32 5.03
535 536 1.664649 GCAAAACAAAGCCCGAGCC 60.665 57.895 0.00 0.00 41.25 4.70
536 537 1.006220 CAAAACAAAGCCCGAGCCC 60.006 57.895 0.00 0.00 41.25 5.19
537 538 2.561037 AAAACAAAGCCCGAGCCCG 61.561 57.895 0.00 0.00 41.25 6.13
548 549 4.678743 GAGCCCGGCCCAGGTTTT 62.679 66.667 5.55 0.00 0.00 2.43
549 550 4.233558 AGCCCGGCCCAGGTTTTT 62.234 61.111 5.55 0.00 0.00 1.94
550 551 3.691342 GCCCGGCCCAGGTTTTTC 61.691 66.667 8.24 0.00 0.00 2.29
551 552 3.370231 CCCGGCCCAGGTTTTTCG 61.370 66.667 0.00 0.00 0.00 3.46
552 553 3.370231 CCGGCCCAGGTTTTTCGG 61.370 66.667 0.00 0.00 0.00 4.30
553 554 3.370231 CGGCCCAGGTTTTTCGGG 61.370 66.667 0.00 0.00 43.42 5.14
556 557 2.203567 CCCAGGTTTTTCGGGCCA 60.204 61.111 4.39 0.00 31.89 5.36
557 558 2.275380 CCCAGGTTTTTCGGGCCAG 61.275 63.158 4.39 0.00 31.89 4.85
558 559 2.275380 CCAGGTTTTTCGGGCCAGG 61.275 63.158 4.39 0.00 0.00 4.45
559 560 1.530655 CAGGTTTTTCGGGCCAGGT 60.531 57.895 4.39 0.00 0.00 4.00
560 561 1.228459 AGGTTTTTCGGGCCAGGTC 60.228 57.895 4.39 0.00 0.00 3.85
561 562 2.622962 GGTTTTTCGGGCCAGGTCG 61.623 63.158 4.39 0.00 0.00 4.79
562 563 1.895231 GTTTTTCGGGCCAGGTCGT 60.895 57.895 4.39 0.00 0.00 4.34
563 564 1.598685 TTTTTCGGGCCAGGTCGTC 60.599 57.895 4.39 0.00 0.00 4.20
564 565 3.869473 TTTTCGGGCCAGGTCGTCG 62.869 63.158 4.39 0.00 0.00 5.12
592 593 4.697102 CCCATGCCCGGGTTTATT 57.303 55.556 24.63 0.00 41.83 1.40
593 594 2.425562 CCCATGCCCGGGTTTATTC 58.574 57.895 24.63 4.14 41.83 1.75
594 595 0.106217 CCCATGCCCGGGTTTATTCT 60.106 55.000 24.63 0.00 41.83 2.40
595 596 1.318576 CCATGCCCGGGTTTATTCTC 58.681 55.000 24.63 2.41 0.00 2.87
596 597 1.409521 CCATGCCCGGGTTTATTCTCA 60.410 52.381 24.63 9.21 0.00 3.27
597 598 2.374184 CATGCCCGGGTTTATTCTCAA 58.626 47.619 24.63 0.00 0.00 3.02
598 599 2.818751 TGCCCGGGTTTATTCTCAAT 57.181 45.000 24.63 0.00 0.00 2.57
599 600 3.094484 TGCCCGGGTTTATTCTCAATT 57.906 42.857 24.63 0.00 0.00 2.32
600 601 4.237976 TGCCCGGGTTTATTCTCAATTA 57.762 40.909 24.63 0.00 0.00 1.40
601 602 4.601084 TGCCCGGGTTTATTCTCAATTAA 58.399 39.130 24.63 0.00 0.00 1.40
602 603 5.205056 TGCCCGGGTTTATTCTCAATTAAT 58.795 37.500 24.63 0.00 0.00 1.40
603 604 5.659079 TGCCCGGGTTTATTCTCAATTAATT 59.341 36.000 24.63 0.00 0.00 1.40
604 605 6.155393 TGCCCGGGTTTATTCTCAATTAATTT 59.845 34.615 24.63 0.00 0.00 1.82
605 606 7.045416 GCCCGGGTTTATTCTCAATTAATTTT 58.955 34.615 24.63 0.00 0.00 1.82
606 607 7.223971 GCCCGGGTTTATTCTCAATTAATTTTC 59.776 37.037 24.63 0.00 0.00 2.29
607 608 7.709182 CCCGGGTTTATTCTCAATTAATTTTCC 59.291 37.037 14.18 0.00 0.00 3.13
608 609 8.474831 CCGGGTTTATTCTCAATTAATTTTCCT 58.525 33.333 0.00 0.00 0.00 3.36
609 610 9.301153 CGGGTTTATTCTCAATTAATTTTCCTG 57.699 33.333 0.00 0.00 0.00 3.86
610 611 9.599866 GGGTTTATTCTCAATTAATTTTCCTGG 57.400 33.333 0.00 0.00 0.00 4.45
611 612 9.098355 GGTTTATTCTCAATTAATTTTCCTGGC 57.902 33.333 0.00 0.00 0.00 4.85
612 613 9.651913 GTTTATTCTCAATTAATTTTCCTGGCA 57.348 29.630 0.00 0.00 0.00 4.92
613 614 9.874205 TTTATTCTCAATTAATTTTCCTGGCAG 57.126 29.630 7.75 7.75 0.00 4.85
614 615 7.722949 ATTCTCAATTAATTTTCCTGGCAGA 57.277 32.000 17.94 0.00 0.00 4.26
615 616 6.515272 TCTCAATTAATTTTCCTGGCAGAC 57.485 37.500 17.94 0.00 0.00 3.51
616 617 5.123820 TCTCAATTAATTTTCCTGGCAGACG 59.876 40.000 17.94 0.00 0.00 4.18
617 618 3.782889 ATTAATTTTCCTGGCAGACGC 57.217 42.857 17.94 0.00 37.44 5.19
618 619 1.083489 TAATTTTCCTGGCAGACGCG 58.917 50.000 17.94 3.53 39.92 6.01
619 620 0.889186 AATTTTCCTGGCAGACGCGT 60.889 50.000 13.85 13.85 39.92 6.01
620 621 0.036765 ATTTTCCTGGCAGACGCGTA 60.037 50.000 17.94 0.00 39.92 4.42
621 622 0.669318 TTTTCCTGGCAGACGCGTAG 60.669 55.000 17.94 9.63 39.92 3.51
675 676 2.157738 GCAAAGTGCAGTCTCTTCCAT 58.842 47.619 0.00 0.00 44.26 3.41
679 680 5.218139 CAAAGTGCAGTCTCTTCCATTTTC 58.782 41.667 0.00 0.00 0.00 2.29
684 685 6.205658 AGTGCAGTCTCTTCCATTTTCTTAAC 59.794 38.462 0.00 0.00 0.00 2.01
729 735 4.803426 GTCACGAGGCTGGCGGAG 62.803 72.222 0.00 0.00 0.00 4.63
939 976 0.464870 CACCCTCATCTCAGCCTCAG 59.535 60.000 0.00 0.00 0.00 3.35
947 984 3.005539 TCAGCCTCAGCCTCACCC 61.006 66.667 0.00 0.00 41.25 4.61
948 985 3.007920 CAGCCTCAGCCTCACCCT 61.008 66.667 0.00 0.00 41.25 4.34
950 987 3.005539 GCCTCAGCCTCACCCTCA 61.006 66.667 0.00 0.00 0.00 3.86
951 988 2.985456 CCTCAGCCTCACCCTCAC 59.015 66.667 0.00 0.00 0.00 3.51
952 989 2.664081 CCTCAGCCTCACCCTCACC 61.664 68.421 0.00 0.00 0.00 4.02
953 990 2.607750 TCAGCCTCACCCTCACCC 60.608 66.667 0.00 0.00 0.00 4.61
954 991 2.608988 CAGCCTCACCCTCACCCT 60.609 66.667 0.00 0.00 0.00 4.34
955 992 2.284995 AGCCTCACCCTCACCCTC 60.285 66.667 0.00 0.00 0.00 4.30
956 993 2.607750 GCCTCACCCTCACCCTCA 60.608 66.667 0.00 0.00 0.00 3.86
957 994 2.960688 GCCTCACCCTCACCCTCAC 61.961 68.421 0.00 0.00 0.00 3.51
958 995 2.294078 CCTCACCCTCACCCTCACC 61.294 68.421 0.00 0.00 0.00 4.02
959 996 2.203938 TCACCCTCACCCTCACCC 60.204 66.667 0.00 0.00 0.00 4.61
960 997 2.203998 CACCCTCACCCTCACCCT 60.204 66.667 0.00 0.00 0.00 4.34
961 998 2.122954 ACCCTCACCCTCACCCTC 59.877 66.667 0.00 0.00 0.00 4.30
1152 1537 2.048503 GTCTACAACCGCACCGCT 60.049 61.111 0.00 0.00 0.00 5.52
1593 1978 3.670377 GGTGGTGCCGGCAACTTC 61.670 66.667 41.74 32.24 34.17 3.01
1623 2008 0.108992 TGCACAACGGGATCGAGTAC 60.109 55.000 0.00 0.00 40.11 2.73
1656 2041 0.969149 TCATCGCCGAAGCCTATGAT 59.031 50.000 0.00 0.00 34.57 2.45
1746 2131 3.641017 GCTGGAGAGCTTCTTGGTT 57.359 52.632 0.00 0.00 42.52 3.67
1761 2146 5.426689 TCTTGGTTGAGATTACTGCAGAT 57.573 39.130 23.35 3.68 0.00 2.90
1770 2155 9.481340 GTTGAGATTACTGCAGATATATTCACA 57.519 33.333 23.35 10.09 0.00 3.58
1798 2183 2.930019 CACTGGAGGGGAGCACCA 60.930 66.667 1.58 0.00 42.91 4.17
1911 2296 1.077086 ACCCACCATTGCAGCATCA 59.923 52.632 0.00 0.00 0.00 3.07
2064 2449 0.373716 GGCAGGCACTTTATTCGTCG 59.626 55.000 0.00 0.00 34.60 5.12
2280 2665 0.979709 CCAGGGAGATGGTGCAGAGA 60.980 60.000 0.00 0.00 35.47 3.10
2328 2713 2.280457 GCAGTAGAGGCCGGCATC 60.280 66.667 32.85 32.85 0.00 3.91
2334 2719 4.479993 GAGGCCGGCATCAGCACT 62.480 66.667 34.54 17.59 44.61 4.40
2361 2746 2.988010 TGTCTGCGAGCCTTTCATAT 57.012 45.000 0.00 0.00 0.00 1.78
2427 2812 1.609208 CACAGAGGGACTTGTTTGGG 58.391 55.000 0.00 0.00 41.55 4.12
2472 2857 0.178990 GCCCAGGTTCTTTCCACACT 60.179 55.000 0.00 0.00 0.00 3.55
2532 2917 0.322816 TGCAGCCACCTGAGGAATTC 60.323 55.000 4.99 0.00 41.77 2.17
2570 2956 1.191535 CTTGGTGACTCGGGGTGATA 58.808 55.000 0.00 0.00 0.00 2.15
2647 3033 7.761409 TCTGAATTGTGTACCTTGAATAATGC 58.239 34.615 0.00 0.00 0.00 3.56
2695 3081 4.718961 AGAACATTTGTGTAGCTTCAGGT 58.281 39.130 0.00 0.00 0.00 4.00
2696 3082 5.133221 AGAACATTTGTGTAGCTTCAGGTT 58.867 37.500 0.00 0.00 0.00 3.50
2736 3122 6.180472 ACACCCAGTTTTATCCACTCATAAG 58.820 40.000 0.00 0.00 0.00 1.73
2739 3125 6.884836 ACCCAGTTTTATCCACTCATAAGTTC 59.115 38.462 0.00 0.00 31.71 3.01
2743 3129 7.333423 CAGTTTTATCCACTCATAAGTTCGGAA 59.667 37.037 0.00 0.00 32.85 4.30
2745 3131 6.540438 TTATCCACTCATAAGTTCGGAACT 57.460 37.500 17.38 17.38 45.46 3.01
2746 3132 4.451629 TCCACTCATAAGTTCGGAACTC 57.548 45.455 22.62 0.00 41.91 3.01
2758 3144 7.989416 AAGTTCGGAACTCATGGTTTTAATA 57.011 32.000 22.62 0.00 41.91 0.98
2779 3165 1.617804 CCTCACATCCCAATGTTGCCT 60.618 52.381 0.00 0.00 43.74 4.75
2785 3171 2.323999 TCCCAATGTTGCCTTGGAAT 57.676 45.000 3.68 0.00 44.95 3.01
2795 3181 4.100653 TGTTGCCTTGGAATTGTGATTTCA 59.899 37.500 0.00 0.00 0.00 2.69
2798 3184 5.299148 TGCCTTGGAATTGTGATTTCAAAG 58.701 37.500 0.00 0.00 39.63 2.77
2821 3214 6.586344 AGATGTCAATATGGTGGTAAGAGTG 58.414 40.000 0.00 0.00 0.00 3.51
2844 3237 5.172205 GGTGACTGATGTTTCTCTACTTCC 58.828 45.833 0.00 0.00 0.00 3.46
2865 3258 7.337942 ACTTCCATGAATCTATTTGAGGTTGTC 59.662 37.037 0.00 0.00 0.00 3.18
2866 3259 6.962182 TCCATGAATCTATTTGAGGTTGTCT 58.038 36.000 0.00 0.00 0.00 3.41
2874 3267 7.062749 TCTATTTGAGGTTGTCTAGTGTTGT 57.937 36.000 0.00 0.00 0.00 3.32
2878 3271 6.474140 TTGAGGTTGTCTAGTGTTGTAAGA 57.526 37.500 0.00 0.00 0.00 2.10
2915 3311 2.614779 CTGTGCTGTCATCCTACTGTG 58.385 52.381 0.00 0.00 0.00 3.66
2916 3312 1.276138 TGTGCTGTCATCCTACTGTGG 59.724 52.381 0.00 0.00 0.00 4.17
2917 3313 1.550524 GTGCTGTCATCCTACTGTGGA 59.449 52.381 0.00 0.00 40.82 4.02
2918 3314 2.169352 GTGCTGTCATCCTACTGTGGAT 59.831 50.000 6.10 6.10 46.91 3.41
2919 3315 2.840038 TGCTGTCATCCTACTGTGGATT 59.160 45.455 8.45 0.00 43.79 3.01
2920 3316 3.201290 GCTGTCATCCTACTGTGGATTG 58.799 50.000 8.45 6.02 43.79 2.67
2921 3317 3.369892 GCTGTCATCCTACTGTGGATTGT 60.370 47.826 8.45 0.00 43.79 2.71
2922 3318 4.186926 CTGTCATCCTACTGTGGATTGTG 58.813 47.826 8.45 2.21 43.79 3.33
2924 3320 3.197766 GTCATCCTACTGTGGATTGTGGA 59.802 47.826 8.45 0.00 43.79 4.02
2927 3323 3.516586 TCCTACTGTGGATTGTGGAAGA 58.483 45.455 0.00 0.00 0.00 2.87
2930 3326 5.363868 TCCTACTGTGGATTGTGGAAGATAG 59.636 44.000 0.00 0.00 0.00 2.08
2944 3340 0.105246 AGATAGCTCTGGTCCTGGGG 60.105 60.000 0.00 0.00 0.00 4.96
2945 3341 0.105453 GATAGCTCTGGTCCTGGGGA 60.105 60.000 0.00 0.00 0.00 4.81
2948 3344 1.613630 GCTCTGGTCCTGGGGAGAA 60.614 63.158 0.00 0.00 29.39 2.87
2950 3346 1.692762 GCTCTGGTCCTGGGGAGAATA 60.693 57.143 0.00 0.00 29.39 1.75
2968 3364 5.869579 AGAATATCATCTTGTTATGGGCGT 58.130 37.500 0.00 0.00 0.00 5.68
3030 3426 7.678947 AGATGGAAGTTCTGTTTGATTGTAG 57.321 36.000 2.25 0.00 0.00 2.74
3031 3427 7.453393 AGATGGAAGTTCTGTTTGATTGTAGA 58.547 34.615 2.25 0.00 0.00 2.59
3032 3428 7.939039 AGATGGAAGTTCTGTTTGATTGTAGAA 59.061 33.333 2.25 0.00 0.00 2.10
3033 3429 8.641498 ATGGAAGTTCTGTTTGATTGTAGAAT 57.359 30.769 2.25 0.00 32.44 2.40
3075 3472 2.054232 AATGGCCTGCTCATTCTCAG 57.946 50.000 3.32 0.00 29.77 3.35
3084 3482 4.458295 CCTGCTCATTCTCAGTGAAATGTT 59.542 41.667 18.94 0.00 38.29 2.71
3088 3486 6.039605 TGCTCATTCTCAGTGAAATGTTTTCA 59.960 34.615 18.94 0.00 38.29 2.69
3097 3495 8.183830 TCAGTGAAATGTTTTCATGTTTGTTC 57.816 30.769 6.01 0.00 40.79 3.18
3106 3504 6.975197 TGTTTTCATGTTTGTTCGATAGCAAA 59.025 30.769 6.32 6.32 32.89 3.68
3115 3513 3.270877 GTTCGATAGCAAACCTGGACAT 58.729 45.455 0.00 0.00 0.00 3.06
3118 3517 3.689161 TCGATAGCAAACCTGGACATTTG 59.311 43.478 0.00 2.05 38.57 2.32
3130 3529 4.628333 CCTGGACATTTGTTGCAAATGATC 59.372 41.667 29.67 23.15 39.36 2.92
3131 3530 5.211174 TGGACATTTGTTGCAAATGATCA 57.789 34.783 29.67 23.81 39.36 2.92
3134 3533 6.711194 TGGACATTTGTTGCAAATGATCATTT 59.289 30.769 29.67 24.83 41.33 2.32
3137 3536 9.109533 GACATTTGTTGCAAATGATCATTTTTC 57.890 29.630 29.67 21.54 38.84 2.29
3206 3605 5.642165 TCAGAGAGGTAAGAGGTACTTGTT 58.358 41.667 0.00 0.00 41.55 2.83
3215 3614 9.993454 AGGTAAGAGGTACTTGTTTAGTTTTAG 57.007 33.333 0.00 0.00 41.55 1.85
3233 3632 8.331730 AGTTTTAGGAATTTATGCAGTACGTT 57.668 30.769 0.00 0.00 0.00 3.99
3241 3641 7.148869 GGAATTTATGCAGTACGTTTTTCAACC 60.149 37.037 0.00 0.00 0.00 3.77
3249 3649 2.866198 ACGTTTTTCAACCGGTCAAAC 58.134 42.857 8.04 13.77 0.00 2.93
3250 3650 2.488937 ACGTTTTTCAACCGGTCAAACT 59.511 40.909 8.04 3.27 0.00 2.66
3251 3651 3.103007 CGTTTTTCAACCGGTCAAACTC 58.897 45.455 8.04 5.23 0.00 3.01
3325 3727 8.583810 CATGTTGATCATGTTTCACTTCTTTT 57.416 30.769 0.00 0.00 46.18 2.27
3335 3740 9.467258 CATGTTTCACTTCTTTTTACATGATGT 57.533 29.630 2.65 2.65 42.26 3.06
3341 3746 8.154203 TCACTTCTTTTTACATGATGTAGTGGA 58.846 33.333 17.41 8.29 33.92 4.02
3357 3762 7.696992 TGTAGTGGAAAGAATATTTCCCAAC 57.303 36.000 15.82 8.92 45.59 3.77
3363 3769 6.374333 TGGAAAGAATATTTCCCAACGAAGAG 59.626 38.462 15.82 0.00 45.59 2.85
3367 3773 8.494016 AAGAATATTTCCCAACGAAGAGTTAG 57.506 34.615 0.00 0.00 42.02 2.34
3370 3776 2.450609 TCCCAACGAAGAGTTAGTGC 57.549 50.000 0.00 0.00 42.02 4.40
3371 3777 1.689813 TCCCAACGAAGAGTTAGTGCA 59.310 47.619 0.00 0.00 42.02 4.57
3373 3779 2.288825 CCCAACGAAGAGTTAGTGCAGA 60.289 50.000 0.00 0.00 42.02 4.26
3379 3785 7.473792 AACGAAGAGTTAGTGCAGACACCAT 62.474 44.000 0.00 0.00 40.79 3.55
3387 3793 2.991250 GTGCAGACACCATACTTGGAT 58.009 47.619 0.00 0.00 46.92 3.41
3396 3802 3.624861 CACCATACTTGGATGCAGAAGTC 59.375 47.826 10.84 0.00 46.92 3.01
3400 3806 2.264455 ACTTGGATGCAGAAGTCCTCT 58.736 47.619 5.69 0.00 35.49 3.69
3401 3807 2.641815 ACTTGGATGCAGAAGTCCTCTT 59.358 45.455 5.69 0.00 35.49 2.85
3405 3811 5.441718 TGGATGCAGAAGTCCTCTTTTAT 57.558 39.130 5.69 0.00 35.49 1.40
3430 3842 7.914465 TCCAAAGATTGTTTGTGTTTATTTGC 58.086 30.769 5.66 0.00 0.00 3.68
3468 3880 6.538021 CAGAATGTGAGTTATTCCTCCTCAAG 59.462 42.308 0.00 0.00 37.01 3.02
3486 3898 5.069648 CCTCAAGGAGTATATGTTGAGCTGA 59.930 44.000 0.00 0.00 43.02 4.26
3488 3900 7.129457 TCAAGGAGTATATGTTGAGCTGATT 57.871 36.000 0.00 0.00 0.00 2.57
3489 3901 6.988580 TCAAGGAGTATATGTTGAGCTGATTG 59.011 38.462 0.00 0.00 0.00 2.67
3492 3905 7.568349 AGGAGTATATGTTGAGCTGATTGAAA 58.432 34.615 0.00 0.00 0.00 2.69
3494 3907 8.844244 GGAGTATATGTTGAGCTGATTGAAAAT 58.156 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.593273 TCGCCTTTACATTTTGAAACATAGTTG 59.407 33.333 0.00 0.00 0.00 3.16
1 2 7.653647 TCGCCTTTACATTTTGAAACATAGTT 58.346 30.769 0.00 0.00 0.00 2.24
2 3 7.209471 TCGCCTTTACATTTTGAAACATAGT 57.791 32.000 0.00 0.00 0.00 2.12
3 4 8.514136 TTTCGCCTTTACATTTTGAAACATAG 57.486 30.769 0.00 0.00 0.00 2.23
4 5 8.873215 TTTTCGCCTTTACATTTTGAAACATA 57.127 26.923 0.00 0.00 0.00 2.29
5 6 7.778470 TTTTCGCCTTTACATTTTGAAACAT 57.222 28.000 0.00 0.00 0.00 2.71
6 7 7.596749 TTTTTCGCCTTTACATTTTGAAACA 57.403 28.000 0.00 0.00 0.00 2.83
40 41 4.605640 ATTTTGCAACATAGGCAGTGTT 57.394 36.364 0.00 2.21 43.05 3.32
41 42 4.559153 GAATTTTGCAACATAGGCAGTGT 58.441 39.130 0.00 0.00 43.05 3.55
42 43 3.928375 GGAATTTTGCAACATAGGCAGTG 59.072 43.478 0.00 0.00 43.05 3.66
43 44 3.834231 AGGAATTTTGCAACATAGGCAGT 59.166 39.130 0.00 0.00 43.05 4.40
44 45 4.427312 GAGGAATTTTGCAACATAGGCAG 58.573 43.478 0.00 0.00 43.05 4.85
45 46 3.195396 GGAGGAATTTTGCAACATAGGCA 59.805 43.478 0.00 0.00 40.00 4.75
46 47 3.430790 GGGAGGAATTTTGCAACATAGGC 60.431 47.826 0.00 0.00 0.00 3.93
47 48 3.181487 CGGGAGGAATTTTGCAACATAGG 60.181 47.826 0.00 0.00 0.00 2.57
48 49 3.734902 GCGGGAGGAATTTTGCAACATAG 60.735 47.826 0.00 0.00 0.00 2.23
49 50 2.165437 GCGGGAGGAATTTTGCAACATA 59.835 45.455 0.00 0.00 0.00 2.29
50 51 1.066929 GCGGGAGGAATTTTGCAACAT 60.067 47.619 0.00 0.00 0.00 2.71
51 52 0.316841 GCGGGAGGAATTTTGCAACA 59.683 50.000 0.00 0.00 0.00 3.33
52 53 0.316841 TGCGGGAGGAATTTTGCAAC 59.683 50.000 0.00 0.00 0.00 4.17
53 54 1.043816 TTGCGGGAGGAATTTTGCAA 58.956 45.000 0.00 0.00 39.73 4.08
54 55 0.316841 GTTGCGGGAGGAATTTTGCA 59.683 50.000 0.00 0.00 43.72 4.08
55 56 0.316841 TGTTGCGGGAGGAATTTTGC 59.683 50.000 0.00 0.00 43.72 3.68
56 57 2.230992 TGATGTTGCGGGAGGAATTTTG 59.769 45.455 0.00 0.00 43.72 2.44
57 58 2.524306 TGATGTTGCGGGAGGAATTTT 58.476 42.857 0.00 0.00 43.72 1.82
58 59 2.214376 TGATGTTGCGGGAGGAATTT 57.786 45.000 0.00 0.00 43.72 1.82
59 60 2.092212 AGATGATGTTGCGGGAGGAATT 60.092 45.455 0.00 0.00 43.72 2.17
60 61 1.492176 AGATGATGTTGCGGGAGGAAT 59.508 47.619 0.00 0.00 43.72 3.01
61 62 0.911769 AGATGATGTTGCGGGAGGAA 59.088 50.000 0.00 0.00 38.07 3.36
62 63 1.788229 TAGATGATGTTGCGGGAGGA 58.212 50.000 0.00 0.00 0.00 3.71
63 64 2.420642 CATAGATGATGTTGCGGGAGG 58.579 52.381 0.00 0.00 0.00 4.30
89 90 7.835634 TTTTAATTTTCGTCTGCACCTTTTT 57.164 28.000 0.00 0.00 0.00 1.94
90 91 7.835634 TTTTTAATTTTCGTCTGCACCTTTT 57.164 28.000 0.00 0.00 0.00 2.27
125 126 6.958752 GCAAAAACACTGAAAGCGTTATTTTT 59.041 30.769 0.00 0.00 38.45 1.94
126 127 6.091441 TGCAAAAACACTGAAAGCGTTATTTT 59.909 30.769 0.00 0.00 38.45 1.82
127 128 5.578727 TGCAAAAACACTGAAAGCGTTATTT 59.421 32.000 0.00 0.00 38.45 1.40
128 129 5.105752 TGCAAAAACACTGAAAGCGTTATT 58.894 33.333 0.00 0.00 38.45 1.40
129 130 4.677584 TGCAAAAACACTGAAAGCGTTAT 58.322 34.783 0.00 0.00 38.45 1.89
130 131 4.098055 TGCAAAAACACTGAAAGCGTTA 57.902 36.364 0.00 0.00 38.45 3.18
131 132 2.953020 TGCAAAAACACTGAAAGCGTT 58.047 38.095 0.00 0.00 41.75 4.84
132 133 2.645730 TGCAAAAACACTGAAAGCGT 57.354 40.000 0.00 0.00 37.60 5.07
133 134 2.665537 TGTTGCAAAAACACTGAAAGCG 59.334 40.909 0.00 0.00 37.60 4.68
134 135 4.660352 TTGTTGCAAAAACACTGAAAGC 57.340 36.364 0.00 0.00 37.60 3.51
135 136 5.081394 GCTTTGTTGCAAAAACACTGAAAG 58.919 37.500 0.18 0.00 42.29 2.62
136 137 4.754114 AGCTTTGTTGCAAAAACACTGAAA 59.246 33.333 0.18 0.00 34.99 2.69
137 138 4.152045 CAGCTTTGTTGCAAAAACACTGAA 59.848 37.500 19.49 0.00 34.99 3.02
138 139 3.679025 CAGCTTTGTTGCAAAAACACTGA 59.321 39.130 19.49 0.00 34.99 3.41
139 140 3.725600 GCAGCTTTGTTGCAAAAACACTG 60.726 43.478 19.74 19.74 39.50 3.66
140 141 2.416202 GCAGCTTTGTTGCAAAAACACT 59.584 40.909 0.18 0.00 39.50 3.55
141 142 2.416202 AGCAGCTTTGTTGCAAAAACAC 59.584 40.909 0.18 0.00 42.09 3.32
142 143 2.415857 CAGCAGCTTTGTTGCAAAAACA 59.584 40.909 0.18 0.00 42.09 2.83
143 144 2.788750 GCAGCAGCTTTGTTGCAAAAAC 60.789 45.455 0.18 0.00 43.87 2.43
144 145 1.397692 GCAGCAGCTTTGTTGCAAAAA 59.602 42.857 0.00 0.00 43.87 1.94
145 146 1.008329 GCAGCAGCTTTGTTGCAAAA 58.992 45.000 0.00 0.00 43.87 2.44
146 147 2.680429 GCAGCAGCTTTGTTGCAAA 58.320 47.368 0.00 0.00 43.87 3.68
147 148 4.423764 GCAGCAGCTTTGTTGCAA 57.576 50.000 9.45 0.00 43.87 4.08
163 164 1.214373 GATGTAGCTCGCTCTGCAGC 61.214 60.000 9.47 0.00 42.96 5.25
164 165 0.933973 CGATGTAGCTCGCTCTGCAG 60.934 60.000 7.63 7.63 32.42 4.41
165 166 1.064783 CGATGTAGCTCGCTCTGCA 59.935 57.895 0.00 0.00 33.39 4.41
166 167 1.659954 CCGATGTAGCTCGCTCTGC 60.660 63.158 0.00 0.00 37.33 4.26
167 168 1.007964 CCCGATGTAGCTCGCTCTG 60.008 63.158 0.00 0.00 37.33 3.35
168 169 2.196925 CCCCGATGTAGCTCGCTCT 61.197 63.158 0.00 0.00 37.33 4.09
169 170 2.136196 CTCCCCGATGTAGCTCGCTC 62.136 65.000 0.00 0.00 37.33 5.03
170 171 2.123854 TCCCCGATGTAGCTCGCT 60.124 61.111 0.00 0.00 37.33 4.93
171 172 1.528292 ATCTCCCCGATGTAGCTCGC 61.528 60.000 0.00 0.00 37.33 5.03
172 173 0.523966 GATCTCCCCGATGTAGCTCG 59.476 60.000 0.00 0.00 38.37 5.03
173 174 1.543802 CAGATCTCCCCGATGTAGCTC 59.456 57.143 0.00 0.00 30.84 4.09
174 175 1.145945 TCAGATCTCCCCGATGTAGCT 59.854 52.381 0.00 0.00 30.84 3.32
175 176 1.271102 GTCAGATCTCCCCGATGTAGC 59.729 57.143 0.00 0.00 30.84 3.58
176 177 1.537638 CGTCAGATCTCCCCGATGTAG 59.462 57.143 0.00 0.00 30.84 2.74
177 178 1.605753 CGTCAGATCTCCCCGATGTA 58.394 55.000 0.00 0.00 30.84 2.29
178 179 1.109920 CCGTCAGATCTCCCCGATGT 61.110 60.000 0.00 0.00 30.84 3.06
179 180 1.662608 CCGTCAGATCTCCCCGATG 59.337 63.158 0.00 0.00 30.84 3.84
180 181 2.203771 GCCGTCAGATCTCCCCGAT 61.204 63.158 0.00 0.00 34.25 4.18
181 182 1.991339 TAGCCGTCAGATCTCCCCGA 61.991 60.000 0.00 0.00 0.00 5.14
182 183 0.896019 ATAGCCGTCAGATCTCCCCG 60.896 60.000 0.00 0.00 0.00 5.73
183 184 2.217510 TATAGCCGTCAGATCTCCCC 57.782 55.000 0.00 0.00 0.00 4.81
184 185 3.093057 ACATATAGCCGTCAGATCTCCC 58.907 50.000 0.00 0.00 0.00 4.30
185 186 3.119316 CCACATATAGCCGTCAGATCTCC 60.119 52.174 0.00 0.00 0.00 3.71
186 187 3.674682 GCCACATATAGCCGTCAGATCTC 60.675 52.174 0.00 0.00 0.00 2.75
187 188 2.232452 GCCACATATAGCCGTCAGATCT 59.768 50.000 0.00 0.00 0.00 2.75
188 189 2.232452 AGCCACATATAGCCGTCAGATC 59.768 50.000 0.00 0.00 0.00 2.75
189 190 2.232452 GAGCCACATATAGCCGTCAGAT 59.768 50.000 0.00 0.00 0.00 2.90
190 191 1.613925 GAGCCACATATAGCCGTCAGA 59.386 52.381 0.00 0.00 0.00 3.27
191 192 1.341209 TGAGCCACATATAGCCGTCAG 59.659 52.381 0.00 0.00 0.00 3.51
192 193 1.408969 TGAGCCACATATAGCCGTCA 58.591 50.000 0.00 0.00 0.00 4.35
193 194 2.526304 TTGAGCCACATATAGCCGTC 57.474 50.000 0.00 0.00 0.00 4.79
194 195 2.289694 GGATTGAGCCACATATAGCCGT 60.290 50.000 0.00 0.00 0.00 5.68
195 196 2.289631 TGGATTGAGCCACATATAGCCG 60.290 50.000 0.00 0.00 31.66 5.52
196 197 3.423539 TGGATTGAGCCACATATAGCC 57.576 47.619 0.00 0.00 31.66 3.93
197 198 4.157289 CCATTGGATTGAGCCACATATAGC 59.843 45.833 0.00 0.00 37.75 2.97
198 199 4.157289 GCCATTGGATTGAGCCACATATAG 59.843 45.833 6.95 0.00 37.75 1.31
199 200 4.081406 GCCATTGGATTGAGCCACATATA 58.919 43.478 6.95 0.00 37.75 0.86
200 201 2.895404 GCCATTGGATTGAGCCACATAT 59.105 45.455 6.95 0.00 37.75 1.78
201 202 2.309613 GCCATTGGATTGAGCCACATA 58.690 47.619 6.95 0.00 37.75 2.29
202 203 1.117150 GCCATTGGATTGAGCCACAT 58.883 50.000 6.95 0.00 37.75 3.21
203 204 1.314534 CGCCATTGGATTGAGCCACA 61.315 55.000 6.95 0.00 37.75 4.17
204 205 1.434696 CGCCATTGGATTGAGCCAC 59.565 57.895 6.95 0.00 37.75 5.01
205 206 2.417257 GCGCCATTGGATTGAGCCA 61.417 57.895 6.95 0.00 35.78 4.75
206 207 2.414594 GCGCCATTGGATTGAGCC 59.585 61.111 6.95 0.00 0.00 4.70
207 208 2.025156 CGCGCCATTGGATTGAGC 59.975 61.111 6.95 2.46 0.00 4.26
208 209 2.717485 CCGCGCCATTGGATTGAG 59.283 61.111 6.95 0.00 0.00 3.02
209 210 2.828095 CCCGCGCCATTGGATTGA 60.828 61.111 6.95 0.00 0.00 2.57
210 211 2.828095 TCCCGCGCCATTGGATTG 60.828 61.111 6.95 0.00 0.00 2.67
211 212 2.516930 CTCCCGCGCCATTGGATT 60.517 61.111 6.95 0.00 0.00 3.01
212 213 4.569180 CCTCCCGCGCCATTGGAT 62.569 66.667 6.95 0.00 0.00 3.41
220 221 4.162690 ATCAACCTCCTCCCGCGC 62.163 66.667 0.00 0.00 0.00 6.86
221 222 2.202932 CATCAACCTCCTCCCGCG 60.203 66.667 0.00 0.00 0.00 6.46
222 223 0.744771 GAACATCAACCTCCTCCCGC 60.745 60.000 0.00 0.00 0.00 6.13
223 224 0.905357 AGAACATCAACCTCCTCCCG 59.095 55.000 0.00 0.00 0.00 5.14
224 225 1.909302 TGAGAACATCAACCTCCTCCC 59.091 52.381 0.00 0.00 34.02 4.30
225 226 3.703001 TTGAGAACATCAACCTCCTCC 57.297 47.619 0.00 0.00 43.09 4.30
234 235 4.013728 CCCCGGTTTAATTGAGAACATCA 58.986 43.478 0.00 0.00 35.62 3.07
235 236 3.181490 GCCCCGGTTTAATTGAGAACATC 60.181 47.826 0.00 0.00 0.00 3.06
236 237 2.758423 GCCCCGGTTTAATTGAGAACAT 59.242 45.455 0.00 0.00 0.00 2.71
237 238 2.164338 GCCCCGGTTTAATTGAGAACA 58.836 47.619 0.00 0.00 0.00 3.18
238 239 2.164338 TGCCCCGGTTTAATTGAGAAC 58.836 47.619 0.00 0.00 0.00 3.01
239 240 2.588464 TGCCCCGGTTTAATTGAGAA 57.412 45.000 0.00 0.00 0.00 2.87
240 241 2.559231 GTTTGCCCCGGTTTAATTGAGA 59.441 45.455 0.00 0.00 0.00 3.27
241 242 2.669950 CGTTTGCCCCGGTTTAATTGAG 60.670 50.000 0.00 0.00 0.00 3.02
242 243 1.269998 CGTTTGCCCCGGTTTAATTGA 59.730 47.619 0.00 0.00 0.00 2.57
243 244 1.000052 ACGTTTGCCCCGGTTTAATTG 60.000 47.619 0.00 0.00 0.00 2.32
244 245 1.270274 GACGTTTGCCCCGGTTTAATT 59.730 47.619 0.00 0.00 0.00 1.40
245 246 0.883153 GACGTTTGCCCCGGTTTAAT 59.117 50.000 0.00 0.00 0.00 1.40
246 247 1.505477 CGACGTTTGCCCCGGTTTAA 61.505 55.000 0.00 0.00 0.00 1.52
247 248 1.960250 CGACGTTTGCCCCGGTTTA 60.960 57.895 0.00 0.00 0.00 2.01
248 249 3.281395 CGACGTTTGCCCCGGTTT 61.281 61.111 0.00 0.00 0.00 3.27
277 278 3.905437 TACAAGCCCGGCCCGAAAC 62.905 63.158 3.71 0.00 0.00 2.78
278 279 2.693896 TTTACAAGCCCGGCCCGAAA 62.694 55.000 3.71 0.00 0.00 3.46
279 280 2.693896 TTTTACAAGCCCGGCCCGAA 62.694 55.000 3.71 0.00 0.00 4.30
280 281 3.193469 TTTTACAAGCCCGGCCCGA 62.193 57.895 3.71 0.00 0.00 5.14
281 282 2.673687 TTTTACAAGCCCGGCCCG 60.674 61.111 5.55 0.00 0.00 6.13
282 283 3.284336 CTTTTACAAGCCCGGCCC 58.716 61.111 5.55 0.00 0.00 5.80
290 291 2.500229 TGAAGGTCGGGCTTTTACAAG 58.500 47.619 0.00 0.00 0.00 3.16
291 292 2.642154 TGAAGGTCGGGCTTTTACAA 57.358 45.000 0.00 0.00 0.00 2.41
292 293 2.871096 ATGAAGGTCGGGCTTTTACA 57.129 45.000 0.00 0.00 0.00 2.41
293 294 3.756963 AGAAATGAAGGTCGGGCTTTTAC 59.243 43.478 0.00 0.00 0.00 2.01
294 295 4.007659 GAGAAATGAAGGTCGGGCTTTTA 58.992 43.478 0.00 0.00 0.00 1.52
295 296 2.820197 GAGAAATGAAGGTCGGGCTTTT 59.180 45.455 0.00 0.00 0.00 2.27
296 297 2.224769 TGAGAAATGAAGGTCGGGCTTT 60.225 45.455 0.00 0.00 0.00 3.51
297 298 1.351017 TGAGAAATGAAGGTCGGGCTT 59.649 47.619 0.00 0.00 0.00 4.35
298 299 0.984230 TGAGAAATGAAGGTCGGGCT 59.016 50.000 0.00 0.00 0.00 5.19
299 300 1.740025 CTTGAGAAATGAAGGTCGGGC 59.260 52.381 0.00 0.00 0.00 6.13
300 301 1.740025 GCTTGAGAAATGAAGGTCGGG 59.260 52.381 0.00 0.00 0.00 5.14
301 302 1.740025 GGCTTGAGAAATGAAGGTCGG 59.260 52.381 0.00 0.00 0.00 4.79
302 303 1.740025 GGGCTTGAGAAATGAAGGTCG 59.260 52.381 0.00 0.00 0.00 4.79
303 304 1.740025 CGGGCTTGAGAAATGAAGGTC 59.260 52.381 0.00 0.00 0.00 3.85
304 305 1.351017 TCGGGCTTGAGAAATGAAGGT 59.649 47.619 0.00 0.00 0.00 3.50
305 306 2.012673 CTCGGGCTTGAGAAATGAAGG 58.987 52.381 1.75 0.00 38.28 3.46
306 307 1.399791 GCTCGGGCTTGAGAAATGAAG 59.600 52.381 0.00 0.00 38.28 3.02
307 308 1.453155 GCTCGGGCTTGAGAAATGAA 58.547 50.000 0.00 0.00 38.28 2.57
308 309 0.392998 GGCTCGGGCTTGAGAAATGA 60.393 55.000 7.48 0.00 38.28 2.57
309 310 1.379642 GGGCTCGGGCTTGAGAAATG 61.380 60.000 7.48 0.00 38.28 2.32
310 311 1.077429 GGGCTCGGGCTTGAGAAAT 60.077 57.895 7.48 0.00 38.28 2.17
311 312 2.351276 GGGCTCGGGCTTGAGAAA 59.649 61.111 7.48 0.00 38.28 2.52
312 313 2.927856 TGGGCTCGGGCTTGAGAA 60.928 61.111 7.48 0.00 38.28 2.87
313 314 3.393970 CTGGGCTCGGGCTTGAGA 61.394 66.667 7.48 0.00 38.28 3.27
330 331 1.300481 GAGTATTTCAGGCTTCGGGC 58.700 55.000 0.00 0.00 41.18 6.13
331 332 1.475213 GGGAGTATTTCAGGCTTCGGG 60.475 57.143 0.00 0.00 0.00 5.14
332 333 1.486726 AGGGAGTATTTCAGGCTTCGG 59.513 52.381 0.00 0.00 0.00 4.30
333 334 2.168521 TCAGGGAGTATTTCAGGCTTCG 59.831 50.000 0.00 0.00 0.00 3.79
334 335 3.914426 TCAGGGAGTATTTCAGGCTTC 57.086 47.619 0.00 0.00 0.00 3.86
335 336 4.870021 AATCAGGGAGTATTTCAGGCTT 57.130 40.909 0.00 0.00 0.00 4.35
336 337 4.228210 TGAAATCAGGGAGTATTTCAGGCT 59.772 41.667 6.42 0.00 43.59 4.58
337 338 4.526970 TGAAATCAGGGAGTATTTCAGGC 58.473 43.478 6.42 0.00 43.59 4.85
338 339 6.127619 GGTTTGAAATCAGGGAGTATTTCAGG 60.128 42.308 9.61 0.00 46.88 3.86
339 340 6.127619 GGGTTTGAAATCAGGGAGTATTTCAG 60.128 42.308 9.61 0.00 46.88 3.02
340 341 5.714806 GGGTTTGAAATCAGGGAGTATTTCA 59.285 40.000 6.42 6.42 45.59 2.69
341 342 5.163652 CGGGTTTGAAATCAGGGAGTATTTC 60.164 44.000 0.00 0.00 40.78 2.17
342 343 4.705023 CGGGTTTGAAATCAGGGAGTATTT 59.295 41.667 0.00 0.00 0.00 1.40
343 344 4.018779 TCGGGTTTGAAATCAGGGAGTATT 60.019 41.667 0.00 0.00 0.00 1.89
344 345 3.521937 TCGGGTTTGAAATCAGGGAGTAT 59.478 43.478 0.00 0.00 0.00 2.12
345 346 2.907696 TCGGGTTTGAAATCAGGGAGTA 59.092 45.455 0.00 0.00 0.00 2.59
346 347 1.702957 TCGGGTTTGAAATCAGGGAGT 59.297 47.619 0.00 0.00 0.00 3.85
347 348 2.359900 CTCGGGTTTGAAATCAGGGAG 58.640 52.381 0.00 0.00 0.00 4.30
348 349 1.613255 GCTCGGGTTTGAAATCAGGGA 60.613 52.381 0.00 0.00 0.00 4.20
349 350 0.811281 GCTCGGGTTTGAAATCAGGG 59.189 55.000 0.00 0.00 0.00 4.45
350 351 0.811281 GGCTCGGGTTTGAAATCAGG 59.189 55.000 0.00 0.00 0.00 3.86
351 352 0.811281 GGGCTCGGGTTTGAAATCAG 59.189 55.000 0.00 0.00 0.00 2.90
352 353 0.958382 CGGGCTCGGGTTTGAAATCA 60.958 55.000 0.00 0.00 0.00 2.57
353 354 1.800681 CGGGCTCGGGTTTGAAATC 59.199 57.895 0.00 0.00 0.00 2.17
354 355 3.996614 CGGGCTCGGGTTTGAAAT 58.003 55.556 0.00 0.00 0.00 2.17
365 366 3.987954 TTGATTTCGGGCCGGGCTC 62.988 63.158 28.80 15.19 0.00 4.70
366 367 3.995506 CTTGATTTCGGGCCGGGCT 62.996 63.158 28.80 10.61 0.00 5.19
367 368 3.518068 CTTGATTTCGGGCCGGGC 61.518 66.667 27.98 22.00 0.00 6.13
368 369 3.518068 GCTTGATTTCGGGCCGGG 61.518 66.667 27.98 8.68 0.00 5.73
369 370 2.438434 AGCTTGATTTCGGGCCGG 60.438 61.111 27.98 9.08 0.00 6.13
370 371 2.813179 CGAGCTTGATTTCGGGCCG 61.813 63.158 22.51 22.51 33.39 6.13
371 372 1.024579 TTCGAGCTTGATTTCGGGCC 61.025 55.000 3.98 0.00 37.42 5.80
372 373 0.375106 CTTCGAGCTTGATTTCGGGC 59.625 55.000 3.98 0.00 37.42 6.13
373 374 0.375106 GCTTCGAGCTTGATTTCGGG 59.625 55.000 3.98 0.00 38.45 5.14
374 375 0.375106 GGCTTCGAGCTTGATTTCGG 59.625 55.000 3.98 0.00 41.99 4.30
375 376 0.375106 GGGCTTCGAGCTTGATTTCG 59.625 55.000 3.98 0.00 41.99 3.46
376 377 0.375106 CGGGCTTCGAGCTTGATTTC 59.625 55.000 3.98 0.00 41.99 2.17
377 378 0.036388 TCGGGCTTCGAGCTTGATTT 60.036 50.000 3.98 0.00 43.74 2.17
378 379 1.596934 TCGGGCTTCGAGCTTGATT 59.403 52.632 3.98 0.00 43.74 2.57
379 380 3.298958 TCGGGCTTCGAGCTTGAT 58.701 55.556 3.98 0.00 43.74 2.57
417 418 6.207810 AGGCTTTCACGTCCATGTATTAAAAA 59.792 34.615 0.00 0.00 0.00 1.94
418 419 5.708230 AGGCTTTCACGTCCATGTATTAAAA 59.292 36.000 0.00 0.00 0.00 1.52
419 420 5.123186 CAGGCTTTCACGTCCATGTATTAAA 59.877 40.000 0.00 0.00 0.00 1.52
420 421 4.634004 CAGGCTTTCACGTCCATGTATTAA 59.366 41.667 0.00 0.00 0.00 1.40
421 422 4.188462 CAGGCTTTCACGTCCATGTATTA 58.812 43.478 0.00 0.00 0.00 0.98
422 423 3.009723 CAGGCTTTCACGTCCATGTATT 58.990 45.455 0.00 0.00 0.00 1.89
423 424 2.632377 CAGGCTTTCACGTCCATGTAT 58.368 47.619 0.00 0.00 0.00 2.29
424 425 1.338674 CCAGGCTTTCACGTCCATGTA 60.339 52.381 0.00 0.00 0.00 2.29
425 426 0.606401 CCAGGCTTTCACGTCCATGT 60.606 55.000 0.00 0.00 0.00 3.21
426 427 1.926511 GCCAGGCTTTCACGTCCATG 61.927 60.000 3.29 0.00 0.00 3.66
427 428 1.675641 GCCAGGCTTTCACGTCCAT 60.676 57.895 3.29 0.00 0.00 3.41
428 429 2.281484 GCCAGGCTTTCACGTCCA 60.281 61.111 3.29 0.00 0.00 4.02
429 430 3.056328 GGCCAGGCTTTCACGTCC 61.056 66.667 12.43 0.00 0.00 4.79
430 431 3.056328 GGGCCAGGCTTTCACGTC 61.056 66.667 12.43 0.00 0.00 4.34
432 433 4.697756 TCGGGCCAGGCTTTCACG 62.698 66.667 12.43 8.85 0.00 4.35
433 434 2.282180 TTCGGGCCAGGCTTTCAC 60.282 61.111 12.43 0.00 0.00 3.18
434 435 2.034066 CTTCGGGCCAGGCTTTCA 59.966 61.111 12.43 0.00 0.00 2.69
435 436 3.443925 GCTTCGGGCCAGGCTTTC 61.444 66.667 12.43 0.46 34.27 2.62
454 455 0.528470 TATTTTTGGCCGGGCTTTCG 59.472 50.000 29.87 0.00 0.00 3.46
455 456 1.822371 TCTATTTTTGGCCGGGCTTTC 59.178 47.619 29.87 2.52 0.00 2.62
456 457 1.931635 TCTATTTTTGGCCGGGCTTT 58.068 45.000 29.87 11.31 0.00 3.51
457 458 1.931635 TTCTATTTTTGGCCGGGCTT 58.068 45.000 29.87 10.96 0.00 4.35
458 459 1.931635 TTTCTATTTTTGGCCGGGCT 58.068 45.000 29.87 11.02 0.00 5.19
459 460 2.753055 TTTTCTATTTTTGGCCGGGC 57.247 45.000 23.42 23.42 0.00 6.13
460 461 4.219725 TCTCTTTTTCTATTTTTGGCCGGG 59.780 41.667 2.18 0.00 0.00 5.73
461 462 5.385509 TCTCTTTTTCTATTTTTGGCCGG 57.614 39.130 0.00 0.00 0.00 6.13
462 463 5.346011 GCTTCTCTTTTTCTATTTTTGGCCG 59.654 40.000 0.00 0.00 0.00 6.13
463 464 5.639506 GGCTTCTCTTTTTCTATTTTTGGCC 59.360 40.000 0.00 0.00 0.00 5.36
464 465 5.639506 GGGCTTCTCTTTTTCTATTTTTGGC 59.360 40.000 0.00 0.00 0.00 4.52
465 466 5.863935 CGGGCTTCTCTTTTTCTATTTTTGG 59.136 40.000 0.00 0.00 0.00 3.28
466 467 6.677913 TCGGGCTTCTCTTTTTCTATTTTTG 58.322 36.000 0.00 0.00 0.00 2.44
467 468 6.570571 GCTCGGGCTTCTCTTTTTCTATTTTT 60.571 38.462 0.00 0.00 35.22 1.94
468 469 5.106118 GCTCGGGCTTCTCTTTTTCTATTTT 60.106 40.000 0.00 0.00 35.22 1.82
469 470 4.396478 GCTCGGGCTTCTCTTTTTCTATTT 59.604 41.667 0.00 0.00 35.22 1.40
470 471 3.942115 GCTCGGGCTTCTCTTTTTCTATT 59.058 43.478 0.00 0.00 35.22 1.73
471 472 3.536570 GCTCGGGCTTCTCTTTTTCTAT 58.463 45.455 0.00 0.00 35.22 1.98
472 473 2.354805 GGCTCGGGCTTCTCTTTTTCTA 60.355 50.000 7.48 0.00 38.73 2.10
473 474 1.611936 GGCTCGGGCTTCTCTTTTTCT 60.612 52.381 7.48 0.00 38.73 2.52
474 475 0.805614 GGCTCGGGCTTCTCTTTTTC 59.194 55.000 7.48 0.00 38.73 2.29
475 476 0.609406 GGGCTCGGGCTTCTCTTTTT 60.609 55.000 7.48 0.00 38.73 1.94
476 477 1.002011 GGGCTCGGGCTTCTCTTTT 60.002 57.895 7.48 0.00 38.73 2.27
477 478 2.671682 GGGCTCGGGCTTCTCTTT 59.328 61.111 7.48 0.00 38.73 2.52
478 479 3.775654 CGGGCTCGGGCTTCTCTT 61.776 66.667 7.48 0.00 38.73 2.85
488 489 3.458163 TAGTTCAGGCCGGGCTCG 61.458 66.667 30.43 22.69 0.00 5.03
489 490 1.972660 ATGTAGTTCAGGCCGGGCTC 61.973 60.000 30.43 17.76 0.00 4.70
490 491 1.562672 AATGTAGTTCAGGCCGGGCT 61.563 55.000 27.45 27.45 0.00 5.19
491 492 0.679960 AAATGTAGTTCAGGCCGGGC 60.680 55.000 22.67 22.67 0.00 6.13
492 493 1.379527 GAAATGTAGTTCAGGCCGGG 58.620 55.000 2.18 0.00 0.00 5.73
493 494 1.006832 CGAAATGTAGTTCAGGCCGG 58.993 55.000 0.00 0.00 0.00 6.13
494 495 1.006832 CCGAAATGTAGTTCAGGCCG 58.993 55.000 0.00 0.00 0.00 6.13
495 496 1.379527 CCCGAAATGTAGTTCAGGCC 58.620 55.000 0.00 0.00 0.00 5.19
496 497 0.733150 GCCCGAAATGTAGTTCAGGC 59.267 55.000 3.87 3.87 42.33 4.85
497 498 2.009774 CAGCCCGAAATGTAGTTCAGG 58.990 52.381 0.00 0.00 0.00 3.86
498 499 1.398390 GCAGCCCGAAATGTAGTTCAG 59.602 52.381 0.00 0.00 0.00 3.02
499 500 1.271108 TGCAGCCCGAAATGTAGTTCA 60.271 47.619 0.00 0.00 0.00 3.18
500 501 1.448985 TGCAGCCCGAAATGTAGTTC 58.551 50.000 0.00 0.00 0.00 3.01
501 502 1.904287 TTGCAGCCCGAAATGTAGTT 58.096 45.000 0.00 0.00 0.00 2.24
502 503 1.904287 TTTGCAGCCCGAAATGTAGT 58.096 45.000 0.00 0.00 0.00 2.73
503 504 2.030363 TGTTTTGCAGCCCGAAATGTAG 60.030 45.455 0.00 0.00 0.00 2.74
504 505 1.957177 TGTTTTGCAGCCCGAAATGTA 59.043 42.857 0.00 0.00 0.00 2.29
505 506 0.749649 TGTTTTGCAGCCCGAAATGT 59.250 45.000 0.00 0.00 0.00 2.71
506 507 1.863267 TTGTTTTGCAGCCCGAAATG 58.137 45.000 0.00 0.00 0.00 2.32
507 508 2.482864 CTTTGTTTTGCAGCCCGAAAT 58.517 42.857 0.00 0.00 0.00 2.17
508 509 1.933247 CTTTGTTTTGCAGCCCGAAA 58.067 45.000 0.00 0.00 0.00 3.46
509 510 0.529555 GCTTTGTTTTGCAGCCCGAA 60.530 50.000 0.00 0.00 0.00 4.30
510 511 1.067250 GCTTTGTTTTGCAGCCCGA 59.933 52.632 0.00 0.00 0.00 5.14
511 512 1.955663 GGCTTTGTTTTGCAGCCCG 60.956 57.895 0.00 0.00 39.57 6.13
512 513 4.047834 GGCTTTGTTTTGCAGCCC 57.952 55.556 0.00 0.00 39.57 5.19
513 514 1.955663 CGGGCTTTGTTTTGCAGCC 60.956 57.895 2.37 2.37 44.31 4.85
514 515 0.940991 CTCGGGCTTTGTTTTGCAGC 60.941 55.000 0.00 0.00 0.00 5.25
515 516 0.940991 GCTCGGGCTTTGTTTTGCAG 60.941 55.000 0.00 0.00 35.22 4.41
516 517 1.067250 GCTCGGGCTTTGTTTTGCA 59.933 52.632 0.00 0.00 35.22 4.08
517 518 1.664649 GGCTCGGGCTTTGTTTTGC 60.665 57.895 7.48 0.00 38.73 3.68
518 519 1.006220 GGGCTCGGGCTTTGTTTTG 60.006 57.895 7.48 0.00 38.73 2.44
519 520 2.561037 CGGGCTCGGGCTTTGTTTT 61.561 57.895 7.48 0.00 38.73 2.43
520 521 2.983592 CGGGCTCGGGCTTTGTTT 60.984 61.111 7.48 0.00 38.73 2.83
531 532 4.678743 AAAACCTGGGCCGGGCTC 62.679 66.667 31.79 16.93 32.02 4.70
532 533 4.233558 AAAAACCTGGGCCGGGCT 62.234 61.111 31.79 17.75 32.02 5.19
533 534 3.691342 GAAAAACCTGGGCCGGGC 61.691 66.667 31.79 22.00 32.02 6.13
534 535 3.370231 CGAAAAACCTGGGCCGGG 61.370 66.667 30.32 30.32 35.68 5.73
535 536 3.370231 CCGAAAAACCTGGGCCGG 61.370 66.667 5.01 5.01 0.00 6.13
536 537 3.370231 CCCGAAAAACCTGGGCCG 61.370 66.667 0.00 0.00 35.82 6.13
539 540 2.203567 TGGCCCGAAAAACCTGGG 60.204 61.111 0.00 0.00 46.22 4.45
540 541 2.275380 CCTGGCCCGAAAAACCTGG 61.275 63.158 0.00 0.00 36.40 4.45
541 542 1.524008 GACCTGGCCCGAAAAACCTG 61.524 60.000 0.00 0.00 0.00 4.00
542 543 1.228459 GACCTGGCCCGAAAAACCT 60.228 57.895 0.00 0.00 0.00 3.50
543 544 2.622962 CGACCTGGCCCGAAAAACC 61.623 63.158 0.00 0.00 0.00 3.27
544 545 1.848932 GACGACCTGGCCCGAAAAAC 61.849 60.000 14.64 0.00 0.00 2.43
545 546 1.598685 GACGACCTGGCCCGAAAAA 60.599 57.895 14.64 0.00 0.00 1.94
546 547 2.031465 GACGACCTGGCCCGAAAA 59.969 61.111 14.64 0.00 0.00 2.29
547 548 4.367023 CGACGACCTGGCCCGAAA 62.367 66.667 14.64 0.00 0.00 3.46
576 577 1.318576 GAGAATAAACCCGGGCATGG 58.681 55.000 24.08 0.00 0.00 3.66
577 578 2.051334 TGAGAATAAACCCGGGCATG 57.949 50.000 24.08 0.00 0.00 4.06
578 579 2.818751 TTGAGAATAAACCCGGGCAT 57.181 45.000 24.08 12.83 0.00 4.40
579 580 2.818751 ATTGAGAATAAACCCGGGCA 57.181 45.000 24.08 6.42 0.00 5.36
580 581 5.784578 ATTAATTGAGAATAAACCCGGGC 57.215 39.130 24.08 2.05 0.00 6.13
581 582 7.709182 GGAAAATTAATTGAGAATAAACCCGGG 59.291 37.037 22.25 22.25 0.00 5.73
582 583 8.474831 AGGAAAATTAATTGAGAATAAACCCGG 58.525 33.333 0.39 0.00 0.00 5.73
583 584 9.301153 CAGGAAAATTAATTGAGAATAAACCCG 57.699 33.333 0.39 0.00 0.00 5.28
584 585 9.599866 CCAGGAAAATTAATTGAGAATAAACCC 57.400 33.333 0.39 0.00 0.00 4.11
585 586 9.098355 GCCAGGAAAATTAATTGAGAATAAACC 57.902 33.333 0.39 0.00 0.00 3.27
586 587 9.651913 TGCCAGGAAAATTAATTGAGAATAAAC 57.348 29.630 0.39 0.00 0.00 2.01
587 588 9.874205 CTGCCAGGAAAATTAATTGAGAATAAA 57.126 29.630 0.39 0.00 0.00 1.40
588 589 9.253832 TCTGCCAGGAAAATTAATTGAGAATAA 57.746 29.630 0.39 0.00 0.00 1.40
589 590 8.686334 GTCTGCCAGGAAAATTAATTGAGAATA 58.314 33.333 0.39 0.00 0.00 1.75
590 591 7.550712 GTCTGCCAGGAAAATTAATTGAGAAT 58.449 34.615 0.39 0.00 0.00 2.40
591 592 6.349280 CGTCTGCCAGGAAAATTAATTGAGAA 60.349 38.462 0.39 0.00 0.00 2.87
592 593 5.123820 CGTCTGCCAGGAAAATTAATTGAGA 59.876 40.000 0.39 0.00 0.00 3.27
593 594 5.335127 CGTCTGCCAGGAAAATTAATTGAG 58.665 41.667 0.39 0.00 0.00 3.02
594 595 4.380444 GCGTCTGCCAGGAAAATTAATTGA 60.380 41.667 0.39 0.00 33.98 2.57
595 596 3.859386 GCGTCTGCCAGGAAAATTAATTG 59.141 43.478 0.39 0.00 33.98 2.32
596 597 3.427503 CGCGTCTGCCAGGAAAATTAATT 60.428 43.478 0.00 0.00 38.08 1.40
597 598 2.097466 CGCGTCTGCCAGGAAAATTAAT 59.903 45.455 0.00 0.00 38.08 1.40
598 599 1.466950 CGCGTCTGCCAGGAAAATTAA 59.533 47.619 0.00 0.00 38.08 1.40
599 600 1.083489 CGCGTCTGCCAGGAAAATTA 58.917 50.000 0.00 0.00 38.08 1.40
600 601 0.889186 ACGCGTCTGCCAGGAAAATT 60.889 50.000 5.58 0.00 38.08 1.82
601 602 0.036765 TACGCGTCTGCCAGGAAAAT 60.037 50.000 18.63 0.00 38.08 1.82
602 603 0.669318 CTACGCGTCTGCCAGGAAAA 60.669 55.000 18.63 0.00 38.08 2.29
603 604 1.080093 CTACGCGTCTGCCAGGAAA 60.080 57.895 18.63 0.00 38.08 3.13
604 605 2.571757 CTACGCGTCTGCCAGGAA 59.428 61.111 18.63 0.00 38.08 3.36
605 606 4.129737 GCTACGCGTCTGCCAGGA 62.130 66.667 18.63 0.00 38.08 3.86
675 676 3.247648 GCAGCAGAGACACGTTAAGAAAA 59.752 43.478 0.00 0.00 0.00 2.29
679 680 1.783284 TGCAGCAGAGACACGTTAAG 58.217 50.000 0.00 0.00 0.00 1.85
684 685 1.301244 AGGTTGCAGCAGAGACACG 60.301 57.895 2.05 0.00 0.00 4.49
705 711 3.681835 AGCCTCGTGACGACCCAC 61.682 66.667 2.39 0.00 0.00 4.61
706 712 3.680786 CAGCCTCGTGACGACCCA 61.681 66.667 2.39 0.00 0.00 4.51
707 713 4.436998 CCAGCCTCGTGACGACCC 62.437 72.222 2.39 0.00 0.00 4.46
729 735 2.182030 CCTTGCCTCCTCGACGAC 59.818 66.667 0.00 0.00 0.00 4.34
899 927 1.884926 GAGGCGGCGGAGAGATTTG 60.885 63.158 9.78 0.00 0.00 2.32
928 965 1.986757 GGTGAGGCTGAGGCTGAGA 60.987 63.158 15.18 0.00 38.98 3.27
939 976 2.607750 TGAGGGTGAGGGTGAGGC 60.608 66.667 0.00 0.00 0.00 4.70
947 984 3.775654 GGCGAGGGTGAGGGTGAG 61.776 72.222 0.00 0.00 0.00 3.51
1152 1537 2.741092 GTGGAGTCGACCTTGGCA 59.259 61.111 13.01 0.00 0.00 4.92
1263 1648 4.459089 GCCTGGACGAGGAGCACC 62.459 72.222 7.84 0.00 46.33 5.01
1410 1795 1.273606 CCCATGCCGAGGTAGAGTATG 59.726 57.143 0.00 0.00 0.00 2.39
1593 1978 0.110688 CGTTGTGCACCATCTTGACG 60.111 55.000 15.69 9.19 0.00 4.35
1623 2008 1.066136 CGATGAGCTGCATATCACCG 58.934 55.000 1.02 1.10 37.34 4.94
1656 2041 2.203139 CCAACACGGTGGAGCACA 60.203 61.111 13.48 0.00 41.65 4.57
1746 2131 8.864087 ACTGTGAATATATCTGCAGTAATCTCA 58.136 33.333 14.67 11.30 40.52 3.27
1798 2183 4.643387 GTCAACCAGCGCCCCACT 62.643 66.667 2.29 0.00 0.00 4.00
1893 2278 1.077086 TGATGCTGCAATGGTGGGT 59.923 52.632 6.36 0.00 0.00 4.51
1899 2284 1.067060 CCATCCAGTGATGCTGCAATG 59.933 52.381 6.36 3.74 45.86 2.82
1911 2296 2.188817 GACAAGTACCTCCCATCCAGT 58.811 52.381 0.00 0.00 0.00 4.00
2325 2710 0.545171 ACATCCCTGGAGTGCTGATG 59.455 55.000 0.00 0.85 38.94 3.07
2328 2713 0.107800 CAGACATCCCTGGAGTGCTG 60.108 60.000 0.00 2.46 0.00 4.41
2334 2719 2.725312 GCTCGCAGACATCCCTGGA 61.725 63.158 0.00 0.00 34.82 3.86
2427 2812 2.464459 GCGCTCATAGGTGTGTGCC 61.464 63.158 0.00 0.00 45.00 5.01
2472 2857 0.898326 TCGCCAGCTTAGTCCACTCA 60.898 55.000 0.00 0.00 0.00 3.41
2553 2938 1.063190 AGATATCACCCCGAGTCACCA 60.063 52.381 5.32 0.00 0.00 4.17
2570 2956 9.892130 ATAAATTAAAGAGAACCACGAAGAGAT 57.108 29.630 0.00 0.00 0.00 2.75
2647 3033 2.888513 GCATACAGCACAAGACACTG 57.111 50.000 0.00 0.00 44.79 3.66
2669 3055 6.304356 TGAAGCTACACAAATGTTCTTCAG 57.696 37.500 15.04 0.00 44.02 3.02
2695 3081 7.924541 ACTGGGTGTATCTAAACCATAGAAAA 58.075 34.615 0.00 0.00 38.27 2.29
2696 3082 7.504926 ACTGGGTGTATCTAAACCATAGAAA 57.495 36.000 0.00 0.00 38.27 2.52
2736 3122 6.373495 AGGTATTAAAACCATGAGTTCCGAAC 59.627 38.462 2.81 2.81 42.40 3.95
2739 3125 5.878116 TGAGGTATTAAAACCATGAGTTCCG 59.122 40.000 0.00 0.00 42.40 4.30
2743 3129 6.828785 GGATGTGAGGTATTAAAACCATGAGT 59.171 38.462 0.00 0.00 42.40 3.41
2745 3131 6.126409 GGGATGTGAGGTATTAAAACCATGA 58.874 40.000 0.00 0.00 42.40 3.07
2746 3132 5.890985 TGGGATGTGAGGTATTAAAACCATG 59.109 40.000 0.00 0.00 42.40 3.66
2758 3144 1.549203 GCAACATTGGGATGTGAGGT 58.451 50.000 0.00 0.00 45.58 3.85
2779 3165 7.724287 TGACATCTTTGAAATCACAATTCCAA 58.276 30.769 0.00 0.00 0.00 3.53
2785 3171 8.805175 ACCATATTGACATCTTTGAAATCACAA 58.195 29.630 0.00 0.00 0.00 3.33
2795 3181 7.554118 CACTCTTACCACCATATTGACATCTTT 59.446 37.037 0.00 0.00 0.00 2.52
2798 3184 5.760253 CCACTCTTACCACCATATTGACATC 59.240 44.000 0.00 0.00 0.00 3.06
2821 3214 5.172205 GGAAGTAGAGAAACATCAGTCACC 58.828 45.833 0.00 0.00 0.00 4.02
2844 3237 8.824781 CACTAGACAACCTCAAATAGATTCATG 58.175 37.037 0.00 0.00 0.00 3.07
2857 3250 9.654663 AAATATCTTACAACACTAGACAACCTC 57.345 33.333 0.00 0.00 0.00 3.85
2915 3311 3.135530 ACCAGAGCTATCTTCCACAATCC 59.864 47.826 0.00 0.00 31.64 3.01
2916 3312 4.376146 GACCAGAGCTATCTTCCACAATC 58.624 47.826 0.00 0.00 31.64 2.67
2917 3313 3.135530 GGACCAGAGCTATCTTCCACAAT 59.864 47.826 0.62 0.00 34.00 2.71
2918 3314 2.501723 GGACCAGAGCTATCTTCCACAA 59.498 50.000 0.62 0.00 34.00 3.33
2919 3315 2.111384 GGACCAGAGCTATCTTCCACA 58.889 52.381 0.62 0.00 34.00 4.17
2920 3316 2.102252 CAGGACCAGAGCTATCTTCCAC 59.898 54.545 7.37 0.00 35.62 4.02
2921 3317 2.392662 CAGGACCAGAGCTATCTTCCA 58.607 52.381 7.37 0.00 35.62 3.53
2922 3318 1.691434 CCAGGACCAGAGCTATCTTCC 59.309 57.143 0.00 0.00 34.01 3.46
2924 3320 1.694048 CCCCAGGACCAGAGCTATCTT 60.694 57.143 0.00 0.00 31.64 2.40
2927 3323 0.105246 CTCCCCAGGACCAGAGCTAT 60.105 60.000 0.00 0.00 0.00 2.97
2930 3326 0.985490 ATTCTCCCCAGGACCAGAGC 60.985 60.000 0.00 0.00 0.00 4.09
2944 3340 5.934625 ACGCCCATAACAAGATGATATTCTC 59.065 40.000 0.00 0.00 0.00 2.87
2945 3341 5.702670 CACGCCCATAACAAGATGATATTCT 59.297 40.000 0.00 0.00 0.00 2.40
2948 3344 4.326826 CCACGCCCATAACAAGATGATAT 58.673 43.478 0.00 0.00 0.00 1.63
2950 3346 2.575532 CCACGCCCATAACAAGATGAT 58.424 47.619 0.00 0.00 0.00 2.45
3001 3397 9.918630 CAATCAAACAGAACTTCCATCTTTAAT 57.081 29.630 0.00 0.00 0.00 1.40
3002 3398 8.912988 ACAATCAAACAGAACTTCCATCTTTAA 58.087 29.630 0.00 0.00 0.00 1.52
3003 3399 8.463930 ACAATCAAACAGAACTTCCATCTTTA 57.536 30.769 0.00 0.00 0.00 1.85
3052 3448 4.539726 TGAGAATGAGCAGGCCATTAATT 58.460 39.130 5.01 0.00 34.67 1.40
3075 3472 7.215696 TCGAACAAACATGAAAACATTTCAC 57.784 32.000 7.61 0.00 0.00 3.18
3097 3495 3.440173 ACAAATGTCCAGGTTTGCTATCG 59.560 43.478 1.68 0.00 38.54 2.92
3106 3504 3.387374 TCATTTGCAACAAATGTCCAGGT 59.613 39.130 24.57 0.00 38.44 4.00
3115 3513 8.675504 ACAAGAAAAATGATCATTTGCAACAAA 58.324 25.926 29.52 0.00 40.57 2.83
3134 3533 7.816995 ACACAAAGCTGAAACAATAACAAGAAA 59.183 29.630 0.00 0.00 0.00 2.52
3137 3536 7.254084 GGAACACAAAGCTGAAACAATAACAAG 60.254 37.037 0.00 0.00 0.00 3.16
3149 3548 1.768275 TCTCCTGGAACACAAAGCTGA 59.232 47.619 0.00 0.00 0.00 4.26
3191 3590 9.987272 TCCTAAAACTAAACAAGTACCTCTTAC 57.013 33.333 0.00 0.00 37.50 2.34
3206 3605 9.439500 ACGTACTGCATAAATTCCTAAAACTAA 57.561 29.630 0.00 0.00 0.00 2.24
3215 3614 7.148869 GGTTGAAAAACGTACTGCATAAATTCC 60.149 37.037 0.00 0.00 0.00 3.01
3231 3630 4.099380 TGAGTTTGACCGGTTGAAAAAC 57.901 40.909 9.42 16.79 0.00 2.43
3233 3632 4.487019 GTTTGAGTTTGACCGGTTGAAAA 58.513 39.130 9.42 7.79 0.00 2.29
3276 3678 9.759473 ATGAAGAAAGGATTAATCTGGAAAAGA 57.241 29.630 14.95 0.00 39.94 2.52
3277 3679 9.798994 CATGAAGAAAGGATTAATCTGGAAAAG 57.201 33.333 14.95 0.00 0.00 2.27
3282 3684 8.284945 TCAACATGAAGAAAGGATTAATCTGG 57.715 34.615 14.95 0.00 0.00 3.86
3341 3746 7.761038 AACTCTTCGTTGGGAAATATTCTTT 57.239 32.000 0.00 0.00 33.72 2.52
3357 3762 2.288213 TGGTGTCTGCACTAACTCTTCG 60.288 50.000 0.00 0.00 44.65 3.79
3363 3769 3.684788 CCAAGTATGGTGTCTGCACTAAC 59.315 47.826 0.00 0.00 44.65 2.34
3379 3785 3.445008 AGAGGACTTCTGCATCCAAGTA 58.555 45.455 6.83 0.00 37.47 2.24
3384 3790 4.819088 GGATAAAAGAGGACTTCTGCATCC 59.181 45.833 0.00 0.00 35.91 3.51
3387 3793 4.908601 TGGATAAAAGAGGACTTCTGCA 57.091 40.909 0.00 0.00 35.91 4.41
3405 3811 7.011857 GGCAAATAAACACAAACAATCTTTGGA 59.988 33.333 0.00 0.00 33.92 3.53
3430 3842 2.422479 CACATTCTGCTTGTCTCCATGG 59.578 50.000 4.97 4.97 0.00 3.66
3440 3852 5.045286 AGGAGGAATAACTCACATTCTGCTT 60.045 40.000 0.00 0.00 39.27 3.91
3468 3880 7.792374 TTTCAATCAGCTCAACATATACTCC 57.208 36.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.