Multiple sequence alignment - TraesCS1B01G372400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G372400 chr1B 100.000 4415 0 0 1 4415 603094769 603090355 0.000000e+00 8154
1 TraesCS1B01G372400 chr1B 87.701 2488 265 24 965 3436 603149492 603147030 0.000000e+00 2861
2 TraesCS1B01G372400 chr1B 83.979 2428 327 34 1039 3435 603261361 603263757 0.000000e+00 2272
3 TraesCS1B01G372400 chr1B 82.828 594 96 4 3825 4415 30853530 30852940 1.090000e-145 527
4 TraesCS1B01G372400 chr1D 92.677 2977 174 23 851 3800 443716185 443719144 0.000000e+00 4250
5 TraesCS1B01G372400 chr1D 88.320 2500 244 22 965 3444 443552616 443555087 0.000000e+00 2955
6 TraesCS1B01G372400 chr1D 93.075 1906 106 8 851 2743 443429759 443427867 0.000000e+00 2765
7 TraesCS1B01G372400 chr1D 83.864 2386 329 30 1081 3435 443467360 443465000 0.000000e+00 2222
8 TraesCS1B01G372400 chr1D 86.261 1019 118 14 1082 2092 443749550 443750554 0.000000e+00 1086
9 TraesCS1B01G372400 chr1D 84.987 393 24 13 146 504 443448701 443448310 2.510000e-97 366
10 TraesCS1B01G372400 chr1D 86.174 311 13 12 291 572 443715878 443716187 4.290000e-80 309
11 TraesCS1B01G372400 chr1A 93.227 2643 148 15 851 3475 539428427 539425798 0.000000e+00 3860
12 TraesCS1B01G372400 chr1A 87.764 2607 259 33 1045 3636 539616536 539613975 0.000000e+00 2992
13 TraesCS1B01G372400 chr1A 90.094 959 80 5 1873 2831 535466661 535467604 0.000000e+00 1230
14 TraesCS1B01G372400 chr1A 81.842 1151 145 36 2007 3109 539721619 539722753 0.000000e+00 909
15 TraesCS1B01G372400 chr1A 94.872 468 24 0 2827 3294 535481108 535481575 0.000000e+00 732
16 TraesCS1B01G372400 chr1A 86.532 594 74 6 3822 4412 532829557 532830147 0.000000e+00 649
17 TraesCS1B01G372400 chr1A 83.262 466 30 23 146 572 539412191 539411735 6.930000e-103 385
18 TraesCS1B01G372400 chr1A 87.645 259 27 4 3536 3794 539425197 539424944 3.340000e-76 296
19 TraesCS1B01G372400 chr1A 92.265 181 13 1 851 1031 539411737 539411558 5.670000e-64 255
20 TraesCS1B01G372400 chr1A 81.911 293 19 22 295 572 539428698 539428425 2.670000e-52 217
21 TraesCS1B01G372400 chr3D 85.678 2381 296 28 1082 3423 341493514 341495888 0.000000e+00 2466
22 TraesCS1B01G372400 chr3D 87.500 128 11 5 2 126 187220221 187220096 4.600000e-30 143
23 TraesCS1B01G372400 chr3B 85.522 2376 299 23 1082 3418 440228949 440231318 0.000000e+00 2440
24 TraesCS1B01G372400 chr3A 85.126 2380 299 28 1082 3418 461841603 461839236 0.000000e+00 2383
25 TraesCS1B01G372400 chr4B 88.368 1195 119 7 1076 2263 660197456 660196275 0.000000e+00 1419
26 TraesCS1B01G372400 chr4B 83.809 1087 164 9 2358 3435 660196204 660195121 0.000000e+00 1022
27 TraesCS1B01G372400 chr7A 87.605 597 70 4 3819 4412 725736747 725737342 0.000000e+00 689
28 TraesCS1B01G372400 chr6B 90.385 520 46 4 3898 4415 606475061 606474544 0.000000e+00 680
29 TraesCS1B01G372400 chr6B 93.380 287 12 2 570 855 184891591 184891871 6.830000e-113 418
30 TraesCS1B01G372400 chr6B 93.594 281 11 2 572 851 76338822 76339096 3.180000e-111 412
31 TraesCS1B01G372400 chr6B 92.734 289 14 2 569 856 687701718 687701436 1.140000e-110 411
32 TraesCS1B01G372400 chr6B 92.734 289 14 2 569 856 687720104 687719822 1.140000e-110 411
33 TraesCS1B01G372400 chr5D 87.091 581 71 4 3835 4412 549703812 549704391 0.000000e+00 654
34 TraesCS1B01G372400 chr4D 85.050 602 83 6 3819 4415 50663292 50662693 1.360000e-169 606
35 TraesCS1B01G372400 chr4D 86.916 107 11 3 2 106 289032019 289031914 2.790000e-22 117
36 TraesCS1B01G372400 chr2A 84.793 605 83 7 3819 4415 565077450 565076847 2.270000e-167 599
37 TraesCS1B01G372400 chr2A 84.975 599 70 9 3819 4415 143844178 143843598 1.370000e-164 590
38 TraesCS1B01G372400 chr2A 93.357 286 10 4 570 853 61973141 61972863 8.830000e-112 414
39 TraesCS1B01G372400 chr2B 84.615 598 70 9 3819 4412 768127581 768128160 3.830000e-160 575
40 TraesCS1B01G372400 chr5B 94.035 285 10 2 570 853 476018216 476018494 4.080000e-115 425
41 TraesCS1B01G372400 chr5B 92.982 285 13 2 570 853 386876011 386876289 4.110000e-110 409
42 TraesCS1B01G372400 chr5B 92.308 286 14 3 572 856 66293136 66293414 2.470000e-107 399
43 TraesCS1B01G372400 chr7B 92.230 296 16 2 559 853 21313410 21313121 3.180000e-111 412
44 TraesCS1B01G372400 chr7D 92.000 125 8 2 1 124 627058633 627058756 1.630000e-39 174
45 TraesCS1B01G372400 chr7D 90.551 127 10 2 1 126 523278916 523278791 2.730000e-37 167
46 TraesCS1B01G372400 chr7D 83.594 128 16 5 2 126 455585664 455585539 1.000000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G372400 chr1B 603090355 603094769 4414 True 8154.000000 8154 100.000000 1 4415 1 chr1B.!!$R2 4414
1 TraesCS1B01G372400 chr1B 603147030 603149492 2462 True 2861.000000 2861 87.701000 965 3436 1 chr1B.!!$R3 2471
2 TraesCS1B01G372400 chr1B 603261361 603263757 2396 False 2272.000000 2272 83.979000 1039 3435 1 chr1B.!!$F1 2396
3 TraesCS1B01G372400 chr1B 30852940 30853530 590 True 527.000000 527 82.828000 3825 4415 1 chr1B.!!$R1 590
4 TraesCS1B01G372400 chr1D 443552616 443555087 2471 False 2955.000000 2955 88.320000 965 3444 1 chr1D.!!$F1 2479
5 TraesCS1B01G372400 chr1D 443427867 443429759 1892 True 2765.000000 2765 93.075000 851 2743 1 chr1D.!!$R1 1892
6 TraesCS1B01G372400 chr1D 443715878 443719144 3266 False 2279.500000 4250 89.425500 291 3800 2 chr1D.!!$F3 3509
7 TraesCS1B01G372400 chr1D 443465000 443467360 2360 True 2222.000000 2222 83.864000 1081 3435 1 chr1D.!!$R3 2354
8 TraesCS1B01G372400 chr1D 443749550 443750554 1004 False 1086.000000 1086 86.261000 1082 2092 1 chr1D.!!$F2 1010
9 TraesCS1B01G372400 chr1A 539613975 539616536 2561 True 2992.000000 2992 87.764000 1045 3636 1 chr1A.!!$R1 2591
10 TraesCS1B01G372400 chr1A 539424944 539428698 3754 True 1457.666667 3860 87.594333 295 3794 3 chr1A.!!$R3 3499
11 TraesCS1B01G372400 chr1A 535466661 535467604 943 False 1230.000000 1230 90.094000 1873 2831 1 chr1A.!!$F2 958
12 TraesCS1B01G372400 chr1A 539721619 539722753 1134 False 909.000000 909 81.842000 2007 3109 1 chr1A.!!$F4 1102
13 TraesCS1B01G372400 chr1A 532829557 532830147 590 False 649.000000 649 86.532000 3822 4412 1 chr1A.!!$F1 590
14 TraesCS1B01G372400 chr1A 539411558 539412191 633 True 320.000000 385 87.763500 146 1031 2 chr1A.!!$R2 885
15 TraesCS1B01G372400 chr3D 341493514 341495888 2374 False 2466.000000 2466 85.678000 1082 3423 1 chr3D.!!$F1 2341
16 TraesCS1B01G372400 chr3B 440228949 440231318 2369 False 2440.000000 2440 85.522000 1082 3418 1 chr3B.!!$F1 2336
17 TraesCS1B01G372400 chr3A 461839236 461841603 2367 True 2383.000000 2383 85.126000 1082 3418 1 chr3A.!!$R1 2336
18 TraesCS1B01G372400 chr4B 660195121 660197456 2335 True 1220.500000 1419 86.088500 1076 3435 2 chr4B.!!$R1 2359
19 TraesCS1B01G372400 chr7A 725736747 725737342 595 False 689.000000 689 87.605000 3819 4412 1 chr7A.!!$F1 593
20 TraesCS1B01G372400 chr6B 606474544 606475061 517 True 680.000000 680 90.385000 3898 4415 1 chr6B.!!$R1 517
21 TraesCS1B01G372400 chr5D 549703812 549704391 579 False 654.000000 654 87.091000 3835 4412 1 chr5D.!!$F1 577
22 TraesCS1B01G372400 chr4D 50662693 50663292 599 True 606.000000 606 85.050000 3819 4415 1 chr4D.!!$R1 596
23 TraesCS1B01G372400 chr2A 565076847 565077450 603 True 599.000000 599 84.793000 3819 4415 1 chr2A.!!$R3 596
24 TraesCS1B01G372400 chr2A 143843598 143844178 580 True 590.000000 590 84.975000 3819 4415 1 chr2A.!!$R2 596
25 TraesCS1B01G372400 chr2B 768127581 768128160 579 False 575.000000 575 84.615000 3819 4412 1 chr2B.!!$F1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1014 0.106569 TGATTGCTTCCCATGCCGAT 60.107 50.0 0.0 0.00 0.0 4.18 F
2092 2210 0.290840 CGTCACGTTCGAATACTGCG 59.709 55.0 0.0 1.89 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2676 2842 1.165270 GGTTGATCCTCCCAAACACG 58.835 55.0 0.0 0.0 31.85 4.49 R
3744 4513 0.323542 AGAACGTCCCCATCGAGTCT 60.324 55.0 0.0 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.718649 GTGAAGAACATGCGCTAATCTAA 57.281 39.130 9.73 0.00 0.00 2.10
23 24 6.292389 GTGAAGAACATGCGCTAATCTAAT 57.708 37.500 9.73 0.00 0.00 1.73
24 25 6.719365 GTGAAGAACATGCGCTAATCTAATT 58.281 36.000 9.73 0.00 0.00 1.40
25 26 6.630443 GTGAAGAACATGCGCTAATCTAATTG 59.370 38.462 9.73 0.00 0.00 2.32
26 27 5.679734 AGAACATGCGCTAATCTAATTGG 57.320 39.130 9.73 0.00 0.00 3.16
27 28 3.904136 ACATGCGCTAATCTAATTGGC 57.096 42.857 9.73 0.00 42.51 4.52
28 29 2.554032 ACATGCGCTAATCTAATTGGCC 59.446 45.455 9.73 0.00 42.93 5.36
29 30 1.604604 TGCGCTAATCTAATTGGCCC 58.395 50.000 9.73 0.00 42.93 5.80
30 31 0.881796 GCGCTAATCTAATTGGCCCC 59.118 55.000 0.00 0.00 42.93 5.80
31 32 1.534729 CGCTAATCTAATTGGCCCCC 58.465 55.000 0.00 0.00 42.93 5.40
49 50 3.371034 CCCCCTAATTTTAAGTGGTGGG 58.629 50.000 0.00 0.00 0.00 4.61
50 51 3.371034 CCCCTAATTTTAAGTGGTGGGG 58.629 50.000 0.00 0.00 45.80 4.96
51 52 2.764010 CCCTAATTTTAAGTGGTGGGGC 59.236 50.000 0.00 0.00 0.00 5.80
52 53 2.764010 CCTAATTTTAAGTGGTGGGGCC 59.236 50.000 0.00 0.00 37.90 5.80
53 54 1.651737 AATTTTAAGTGGTGGGGCCC 58.348 50.000 18.17 18.17 36.04 5.80
54 55 0.613572 ATTTTAAGTGGTGGGGCCCG 60.614 55.000 19.83 0.00 36.04 6.13
55 56 2.009208 TTTTAAGTGGTGGGGCCCGT 62.009 55.000 19.83 0.79 36.04 5.28
56 57 2.414658 TTTAAGTGGTGGGGCCCGTC 62.415 60.000 19.83 13.62 36.04 4.79
62 63 3.007323 GTGGGGCCCGTCCTACTT 61.007 66.667 19.83 0.00 35.68 2.24
63 64 1.686800 GTGGGGCCCGTCCTACTTA 60.687 63.158 19.83 0.00 35.68 2.24
64 65 1.080722 TGGGGCCCGTCCTACTTAA 59.919 57.895 19.83 0.00 34.39 1.85
65 66 1.266867 TGGGGCCCGTCCTACTTAAC 61.267 60.000 19.83 0.00 34.39 2.01
66 67 0.979709 GGGGCCCGTCCTACTTAACT 60.980 60.000 17.79 0.00 34.39 2.24
67 68 0.177373 GGGCCCGTCCTACTTAACTG 59.823 60.000 5.69 0.00 34.39 3.16
68 69 1.188863 GGCCCGTCCTACTTAACTGA 58.811 55.000 0.00 0.00 0.00 3.41
69 70 1.551883 GGCCCGTCCTACTTAACTGAA 59.448 52.381 0.00 0.00 0.00 3.02
70 71 2.169978 GGCCCGTCCTACTTAACTGAAT 59.830 50.000 0.00 0.00 0.00 2.57
71 72 3.455327 GCCCGTCCTACTTAACTGAATC 58.545 50.000 0.00 0.00 0.00 2.52
72 73 3.118884 GCCCGTCCTACTTAACTGAATCA 60.119 47.826 0.00 0.00 0.00 2.57
73 74 4.430908 CCCGTCCTACTTAACTGAATCAC 58.569 47.826 0.00 0.00 0.00 3.06
74 75 4.081862 CCCGTCCTACTTAACTGAATCACA 60.082 45.833 0.00 0.00 0.00 3.58
75 76 5.395324 CCCGTCCTACTTAACTGAATCACAT 60.395 44.000 0.00 0.00 0.00 3.21
76 77 5.749109 CCGTCCTACTTAACTGAATCACATC 59.251 44.000 0.00 0.00 0.00 3.06
77 78 5.749109 CGTCCTACTTAACTGAATCACATCC 59.251 44.000 0.00 0.00 0.00 3.51
78 79 6.627287 CGTCCTACTTAACTGAATCACATCCA 60.627 42.308 0.00 0.00 0.00 3.41
79 80 7.275920 GTCCTACTTAACTGAATCACATCCAT 58.724 38.462 0.00 0.00 0.00 3.41
80 81 7.770897 GTCCTACTTAACTGAATCACATCCATT 59.229 37.037 0.00 0.00 0.00 3.16
81 82 8.988060 TCCTACTTAACTGAATCACATCCATTA 58.012 33.333 0.00 0.00 0.00 1.90
82 83 9.613428 CCTACTTAACTGAATCACATCCATTAA 57.387 33.333 0.00 0.00 0.00 1.40
85 86 9.911788 ACTTAACTGAATCACATCCATTAATCT 57.088 29.630 0.00 0.00 0.00 2.40
96 97 9.914131 TCACATCCATTAATCTCTAATAGTTCG 57.086 33.333 0.00 0.00 0.00 3.95
97 98 9.698309 CACATCCATTAATCTCTAATAGTTCGT 57.302 33.333 0.00 0.00 0.00 3.85
104 105 9.708092 ATTAATCTCTAATAGTTCGTAAAGCCC 57.292 33.333 0.00 0.00 0.00 5.19
105 106 5.526506 TCTCTAATAGTTCGTAAAGCCCC 57.473 43.478 0.00 0.00 0.00 5.80
106 107 4.037208 TCTCTAATAGTTCGTAAAGCCCCG 59.963 45.833 0.00 0.00 0.00 5.73
107 108 1.660167 AATAGTTCGTAAAGCCCCGC 58.340 50.000 0.00 0.00 0.00 6.13
108 109 0.828677 ATAGTTCGTAAAGCCCCGCT 59.171 50.000 0.00 0.00 42.56 5.52
109 110 1.473258 TAGTTCGTAAAGCCCCGCTA 58.527 50.000 0.00 0.00 38.25 4.26
110 111 0.609662 AGTTCGTAAAGCCCCGCTAA 59.390 50.000 0.00 0.00 38.25 3.09
111 112 1.002315 AGTTCGTAAAGCCCCGCTAAA 59.998 47.619 0.00 0.00 38.25 1.85
112 113 1.395954 GTTCGTAAAGCCCCGCTAAAG 59.604 52.381 0.00 0.00 38.25 1.85
113 114 0.609662 TCGTAAAGCCCCGCTAAAGT 59.390 50.000 0.00 0.00 38.25 2.66
114 115 0.725117 CGTAAAGCCCCGCTAAAGTG 59.275 55.000 0.00 0.00 38.25 3.16
115 116 0.450583 GTAAAGCCCCGCTAAAGTGC 59.549 55.000 0.00 0.00 38.25 4.40
116 117 0.678684 TAAAGCCCCGCTAAAGTGCC 60.679 55.000 0.00 0.00 38.25 5.01
117 118 3.938637 AAGCCCCGCTAAAGTGCCC 62.939 63.158 0.00 0.00 38.25 5.36
119 120 4.404098 CCCCGCTAAAGTGCCCGT 62.404 66.667 0.00 0.00 0.00 5.28
120 121 3.124921 CCCGCTAAAGTGCCCGTG 61.125 66.667 0.00 0.00 0.00 4.94
121 122 2.358247 CCGCTAAAGTGCCCGTGT 60.358 61.111 0.00 0.00 0.00 4.49
122 123 2.677003 CCGCTAAAGTGCCCGTGTG 61.677 63.158 0.00 0.00 0.00 3.82
123 124 1.959226 CGCTAAAGTGCCCGTGTGT 60.959 57.895 0.00 0.00 0.00 3.72
124 125 1.574428 GCTAAAGTGCCCGTGTGTG 59.426 57.895 0.00 0.00 0.00 3.82
125 126 1.164041 GCTAAAGTGCCCGTGTGTGT 61.164 55.000 0.00 0.00 0.00 3.72
126 127 0.586319 CTAAAGTGCCCGTGTGTGTG 59.414 55.000 0.00 0.00 0.00 3.82
127 128 0.107606 TAAAGTGCCCGTGTGTGTGT 60.108 50.000 0.00 0.00 0.00 3.72
128 129 1.653094 AAAGTGCCCGTGTGTGTGTG 61.653 55.000 0.00 0.00 0.00 3.82
129 130 2.813226 AAGTGCCCGTGTGTGTGTGT 62.813 55.000 0.00 0.00 0.00 3.72
130 131 2.821810 TGCCCGTGTGTGTGTGTG 60.822 61.111 0.00 0.00 0.00 3.82
131 132 2.822255 GCCCGTGTGTGTGTGTGT 60.822 61.111 0.00 0.00 0.00 3.72
132 133 3.097672 CCCGTGTGTGTGTGTGTG 58.902 61.111 0.00 0.00 0.00 3.82
133 134 1.743623 CCCGTGTGTGTGTGTGTGT 60.744 57.895 0.00 0.00 0.00 3.72
134 135 1.423450 CCGTGTGTGTGTGTGTGTG 59.577 57.895 0.00 0.00 0.00 3.82
135 136 1.295357 CCGTGTGTGTGTGTGTGTGT 61.295 55.000 0.00 0.00 0.00 3.72
136 137 1.351153 CGTGTGTGTGTGTGTGTGTA 58.649 50.000 0.00 0.00 0.00 2.90
137 138 1.323235 CGTGTGTGTGTGTGTGTGTAG 59.677 52.381 0.00 0.00 0.00 2.74
138 139 1.062002 GTGTGTGTGTGTGTGTGTAGC 59.938 52.381 0.00 0.00 0.00 3.58
139 140 1.338200 TGTGTGTGTGTGTGTGTAGCA 60.338 47.619 0.00 0.00 0.00 3.49
140 141 1.939934 GTGTGTGTGTGTGTGTAGCAT 59.060 47.619 0.00 0.00 0.00 3.79
141 142 2.354510 GTGTGTGTGTGTGTGTAGCATT 59.645 45.455 0.00 0.00 0.00 3.56
142 143 3.558006 GTGTGTGTGTGTGTGTAGCATTA 59.442 43.478 0.00 0.00 0.00 1.90
143 144 3.558006 TGTGTGTGTGTGTGTAGCATTAC 59.442 43.478 0.00 0.00 0.00 1.89
144 145 3.807622 GTGTGTGTGTGTGTAGCATTACT 59.192 43.478 0.00 0.00 0.00 2.24
150 151 5.289675 GTGTGTGTGTAGCATTACTCATCTC 59.710 44.000 0.00 0.00 36.16 2.75
167 168 7.814642 ACTCATCTCAAAAAGAGCATTTGTAG 58.185 34.615 0.00 0.00 44.35 2.74
182 183 0.246635 TGTAGCTTCTTCCTCCGTGC 59.753 55.000 0.00 0.00 0.00 5.34
184 185 0.532573 TAGCTTCTTCCTCCGTGCAG 59.467 55.000 0.00 0.00 0.00 4.41
207 208 2.356278 GTCCAGGAGGGCATGCAA 59.644 61.111 21.36 0.00 40.10 4.08
209 210 0.685458 GTCCAGGAGGGCATGCAAAT 60.685 55.000 21.36 3.85 40.10 2.32
252 254 8.129496 TCTAAATTTAATCCCAACCCTTCAAC 57.871 34.615 0.00 0.00 0.00 3.18
385 409 4.329545 ACGTGTGCATCGGGGCTT 62.330 61.111 16.17 0.00 34.04 4.35
447 486 1.406341 GGATAGCCGTACAAGTTGCCA 60.406 52.381 1.81 0.00 0.00 4.92
470 509 6.767902 CCAATGGTATGATATGGTACTATGGC 59.232 42.308 1.31 0.00 0.00 4.40
500 546 4.814234 GTGAGTCACAAGTCCATTACACAA 59.186 41.667 18.54 0.00 34.08 3.33
503 549 6.649141 TGAGTCACAAGTCCATTACACAATAC 59.351 38.462 0.00 0.00 0.00 1.89
504 550 6.530120 AGTCACAAGTCCATTACACAATACA 58.470 36.000 0.00 0.00 0.00 2.29
505 551 6.650807 AGTCACAAGTCCATTACACAATACAG 59.349 38.462 0.00 0.00 0.00 2.74
506 552 6.426937 GTCACAAGTCCATTACACAATACAGT 59.573 38.462 0.00 0.00 0.00 3.55
507 553 7.601130 GTCACAAGTCCATTACACAATACAGTA 59.399 37.037 0.00 0.00 0.00 2.74
508 554 8.318412 TCACAAGTCCATTACACAATACAGTAT 58.682 33.333 0.00 0.00 0.00 2.12
509 555 8.390354 CACAAGTCCATTACACAATACAGTATG 58.610 37.037 0.00 0.00 46.00 2.39
515 563 7.704899 TCCATTACACAATACAGTATGAACGAG 59.295 37.037 0.00 0.00 39.69 4.18
520 568 5.685954 CACAATACAGTATGAACGAGCGTAT 59.314 40.000 0.00 0.00 39.69 3.06
553 606 4.873129 CGCTCCGCTGGCGTGTAT 62.873 66.667 13.84 0.00 46.37 2.29
569 622 6.095860 TGGCGTGTATACACATAGAGTTAGTT 59.904 38.462 30.17 0.00 46.75 2.24
570 623 6.976925 GGCGTGTATACACATAGAGTTAGTTT 59.023 38.462 30.17 0.00 46.75 2.66
571 624 8.131100 GGCGTGTATACACATAGAGTTAGTTTA 58.869 37.037 30.17 0.00 46.75 2.01
572 625 9.167239 GCGTGTATACACATAGAGTTAGTTTAG 57.833 37.037 30.17 12.67 46.75 1.85
573 626 9.661187 CGTGTATACACATAGAGTTAGTTTAGG 57.339 37.037 30.17 8.56 46.75 2.69
574 627 9.460906 GTGTATACACATAGAGTTAGTTTAGGC 57.539 37.037 27.37 0.00 45.75 3.93
575 628 9.417561 TGTATACACATAGAGTTAGTTTAGGCT 57.582 33.333 0.08 0.00 0.00 4.58
576 629 9.680315 GTATACACATAGAGTTAGTTTAGGCTG 57.320 37.037 0.00 0.00 0.00 4.85
577 630 5.978814 ACACATAGAGTTAGTTTAGGCTGG 58.021 41.667 0.00 0.00 0.00 4.85
578 631 5.484290 ACACATAGAGTTAGTTTAGGCTGGT 59.516 40.000 0.00 0.00 0.00 4.00
579 632 6.013639 ACACATAGAGTTAGTTTAGGCTGGTT 60.014 38.462 0.00 0.00 0.00 3.67
580 633 6.313905 CACATAGAGTTAGTTTAGGCTGGTTG 59.686 42.308 0.00 0.00 0.00 3.77
581 634 4.976540 AGAGTTAGTTTAGGCTGGTTGT 57.023 40.909 0.00 0.00 0.00 3.32
582 635 7.179694 ACATAGAGTTAGTTTAGGCTGGTTGTA 59.820 37.037 0.00 0.00 0.00 2.41
583 636 6.429521 AGAGTTAGTTTAGGCTGGTTGTAA 57.570 37.500 0.00 0.00 0.00 2.41
584 637 7.017319 AGAGTTAGTTTAGGCTGGTTGTAAT 57.983 36.000 0.00 0.00 0.00 1.89
585 638 6.879458 AGAGTTAGTTTAGGCTGGTTGTAATG 59.121 38.462 0.00 0.00 0.00 1.90
586 639 5.944007 AGTTAGTTTAGGCTGGTTGTAATGG 59.056 40.000 0.00 0.00 0.00 3.16
587 640 3.697166 AGTTTAGGCTGGTTGTAATGGG 58.303 45.455 0.00 0.00 0.00 4.00
588 641 3.075432 AGTTTAGGCTGGTTGTAATGGGT 59.925 43.478 0.00 0.00 0.00 4.51
589 642 4.290196 AGTTTAGGCTGGTTGTAATGGGTA 59.710 41.667 0.00 0.00 0.00 3.69
590 643 4.497291 TTAGGCTGGTTGTAATGGGTAG 57.503 45.455 0.00 0.00 0.00 3.18
591 644 2.275466 AGGCTGGTTGTAATGGGTAGT 58.725 47.619 0.00 0.00 0.00 2.73
592 645 3.456842 AGGCTGGTTGTAATGGGTAGTA 58.543 45.455 0.00 0.00 0.00 1.82
593 646 4.045022 AGGCTGGTTGTAATGGGTAGTAT 58.955 43.478 0.00 0.00 0.00 2.12
594 647 4.477213 AGGCTGGTTGTAATGGGTAGTATT 59.523 41.667 0.00 0.00 0.00 1.89
595 648 5.668535 AGGCTGGTTGTAATGGGTAGTATTA 59.331 40.000 0.00 0.00 0.00 0.98
596 649 6.331837 AGGCTGGTTGTAATGGGTAGTATTAT 59.668 38.462 0.00 0.00 0.00 1.28
597 650 7.514820 AGGCTGGTTGTAATGGGTAGTATTATA 59.485 37.037 0.00 0.00 0.00 0.98
598 651 8.158789 GGCTGGTTGTAATGGGTAGTATTATAA 58.841 37.037 0.00 0.00 0.00 0.98
599 652 9.216117 GCTGGTTGTAATGGGTAGTATTATAAG 57.784 37.037 0.00 0.00 0.00 1.73
641 694 9.696572 TGATATTAGTGTATGATACTACCTCCC 57.303 37.037 4.03 0.00 30.81 4.30
642 695 9.924010 GATATTAGTGTATGATACTACCTCCCT 57.076 37.037 4.03 0.00 30.81 4.20
645 698 6.783517 AGTGTATGATACTACCTCCCTAGT 57.216 41.667 4.03 0.00 0.00 2.57
646 699 6.544650 AGTGTATGATACTACCTCCCTAGTG 58.455 44.000 4.03 0.00 0.00 2.74
647 700 5.183522 GTGTATGATACTACCTCCCTAGTGC 59.816 48.000 4.03 0.00 0.00 4.40
648 701 3.965470 TGATACTACCTCCCTAGTGCA 57.035 47.619 0.00 0.00 0.00 4.57
649 702 4.471078 TGATACTACCTCCCTAGTGCAT 57.529 45.455 0.00 0.00 0.00 3.96
650 703 5.594199 TGATACTACCTCCCTAGTGCATA 57.406 43.478 0.00 0.00 0.00 3.14
651 704 6.153942 TGATACTACCTCCCTAGTGCATAT 57.846 41.667 0.00 0.00 0.00 1.78
652 705 7.280044 TGATACTACCTCCCTAGTGCATATA 57.720 40.000 0.00 0.00 0.00 0.86
653 706 7.883823 TGATACTACCTCCCTAGTGCATATAT 58.116 38.462 0.00 0.00 0.00 0.86
654 707 7.999545 TGATACTACCTCCCTAGTGCATATATC 59.000 40.741 0.00 0.00 0.00 1.63
655 708 6.153942 ACTACCTCCCTAGTGCATATATCA 57.846 41.667 0.00 0.00 0.00 2.15
656 709 6.746894 ACTACCTCCCTAGTGCATATATCAT 58.253 40.000 0.00 0.00 0.00 2.45
657 710 7.883823 ACTACCTCCCTAGTGCATATATCATA 58.116 38.462 0.00 0.00 0.00 2.15
658 711 8.515351 ACTACCTCCCTAGTGCATATATCATAT 58.485 37.037 0.00 0.00 0.00 1.78
659 712 7.609097 ACCTCCCTAGTGCATATATCATATG 57.391 40.000 0.00 0.00 0.00 1.78
695 748 8.967664 AAATGACTTTATTTATTGCCATGCAT 57.032 26.923 0.00 0.00 38.76 3.96
696 749 7.956420 ATGACTTTATTTATTGCCATGCATG 57.044 32.000 20.19 20.19 38.76 4.06
697 750 7.110043 TGACTTTATTTATTGCCATGCATGA 57.890 32.000 28.31 8.76 38.76 3.07
698 751 6.979817 TGACTTTATTTATTGCCATGCATGAC 59.020 34.615 28.31 17.77 38.76 3.06
699 752 6.876155 ACTTTATTTATTGCCATGCATGACA 58.124 32.000 28.31 20.53 38.76 3.58
700 753 6.757947 ACTTTATTTATTGCCATGCATGACAC 59.242 34.615 28.31 16.49 38.76 3.67
701 754 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
702 755 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
703 756 5.848833 TTTATTGCCATGCATGACACATA 57.151 34.783 28.31 17.78 38.76 2.29
704 757 3.720949 ATTGCCATGCATGACACATAC 57.279 42.857 28.31 8.36 38.76 2.39
705 758 2.423446 TGCCATGCATGACACATACT 57.577 45.000 28.31 0.00 31.71 2.12
706 759 3.557228 TGCCATGCATGACACATACTA 57.443 42.857 28.31 0.00 31.71 1.82
707 760 3.469739 TGCCATGCATGACACATACTAG 58.530 45.455 28.31 8.01 31.71 2.57
708 761 3.118298 TGCCATGCATGACACATACTAGT 60.118 43.478 28.31 0.00 31.71 2.57
709 762 3.249320 GCCATGCATGACACATACTAGTG 59.751 47.826 28.31 7.28 44.93 2.74
710 763 7.601456 TGCCATGCATGACACATACTAGTGT 62.601 44.000 28.31 0.00 44.07 3.55
711 764 8.307927 TGCCATGCATGACACATACTAGTGTA 62.308 42.308 28.31 2.94 42.57 2.90
712 765 9.976056 TGCCATGCATGACACATACTAGTGTAG 62.976 44.444 28.31 5.81 42.57 2.74
729 782 9.856488 ACTAGTGTAGCATTTATTATGATACGG 57.144 33.333 0.00 2.94 42.05 4.02
730 783 9.856488 CTAGTGTAGCATTTATTATGATACGGT 57.144 33.333 8.18 0.00 42.05 4.83
785 838 9.911788 ACTTCATTTAATTCTATGTCACCTCAT 57.088 29.630 0.00 0.00 0.00 2.90
787 840 9.904198 TTCATTTAATTCTATGTCACCTCATCA 57.096 29.630 0.00 0.00 0.00 3.07
788 841 9.904198 TCATTTAATTCTATGTCACCTCATCAA 57.096 29.630 0.00 0.00 0.00 2.57
791 844 9.739276 TTTAATTCTATGTCACCTCATCAAAGT 57.261 29.630 0.00 0.00 0.00 2.66
792 845 9.739276 TTAATTCTATGTCACCTCATCAAAGTT 57.261 29.630 0.00 0.00 0.00 2.66
793 846 7.621428 ATTCTATGTCACCTCATCAAAGTTG 57.379 36.000 0.00 0.00 0.00 3.16
794 847 6.114187 TCTATGTCACCTCATCAAAGTTGT 57.886 37.500 0.00 0.00 0.00 3.32
795 848 6.166279 TCTATGTCACCTCATCAAAGTTGTC 58.834 40.000 0.00 0.00 0.00 3.18
796 849 4.422073 TGTCACCTCATCAAAGTTGTCT 57.578 40.909 0.00 0.00 0.00 3.41
797 850 5.545063 TGTCACCTCATCAAAGTTGTCTA 57.455 39.130 0.00 0.00 0.00 2.59
798 851 5.541845 TGTCACCTCATCAAAGTTGTCTAG 58.458 41.667 0.00 0.00 0.00 2.43
799 852 5.070446 TGTCACCTCATCAAAGTTGTCTAGT 59.930 40.000 0.00 0.00 0.00 2.57
800 853 5.992217 GTCACCTCATCAAAGTTGTCTAGTT 59.008 40.000 0.00 0.00 0.00 2.24
801 854 5.991606 TCACCTCATCAAAGTTGTCTAGTTG 59.008 40.000 0.00 0.00 0.00 3.16
802 855 5.180117 CACCTCATCAAAGTTGTCTAGTTGG 59.820 44.000 0.00 0.00 0.00 3.77
803 856 4.154918 CCTCATCAAAGTTGTCTAGTTGGC 59.845 45.833 0.00 0.00 0.00 4.52
804 857 4.713553 TCATCAAAGTTGTCTAGTTGGCA 58.286 39.130 0.00 0.00 0.00 4.92
805 858 5.316167 TCATCAAAGTTGTCTAGTTGGCAT 58.684 37.500 0.00 0.00 0.00 4.40
806 859 5.181811 TCATCAAAGTTGTCTAGTTGGCATG 59.818 40.000 0.00 0.00 0.00 4.06
807 860 3.253188 TCAAAGTTGTCTAGTTGGCATGC 59.747 43.478 9.90 9.90 0.00 4.06
808 861 2.566833 AGTTGTCTAGTTGGCATGCA 57.433 45.000 21.36 2.54 0.00 3.96
809 862 3.077484 AGTTGTCTAGTTGGCATGCAT 57.923 42.857 21.36 4.57 0.00 3.96
810 863 4.220693 AGTTGTCTAGTTGGCATGCATA 57.779 40.909 21.36 4.71 0.00 3.14
811 864 4.588899 AGTTGTCTAGTTGGCATGCATAA 58.411 39.130 21.36 11.29 0.00 1.90
812 865 5.195940 AGTTGTCTAGTTGGCATGCATAAT 58.804 37.500 21.36 8.25 0.00 1.28
813 866 6.356556 AGTTGTCTAGTTGGCATGCATAATA 58.643 36.000 21.36 9.00 0.00 0.98
814 867 6.260936 AGTTGTCTAGTTGGCATGCATAATAC 59.739 38.462 21.36 9.17 0.00 1.89
815 868 5.928976 TGTCTAGTTGGCATGCATAATACT 58.071 37.500 21.36 15.59 0.00 2.12
816 869 7.061566 TGTCTAGTTGGCATGCATAATACTA 57.938 36.000 21.36 15.85 0.00 1.82
817 870 7.505258 TGTCTAGTTGGCATGCATAATACTAA 58.495 34.615 21.36 7.16 0.00 2.24
818 871 8.156820 TGTCTAGTTGGCATGCATAATACTAAT 58.843 33.333 21.36 0.00 0.00 1.73
819 872 9.653287 GTCTAGTTGGCATGCATAATACTAATA 57.347 33.333 21.36 7.13 0.00 0.98
820 873 9.653287 TCTAGTTGGCATGCATAATACTAATAC 57.347 33.333 21.36 0.00 0.00 1.89
821 874 9.658799 CTAGTTGGCATGCATAATACTAATACT 57.341 33.333 21.36 7.86 0.00 2.12
823 876 9.658799 AGTTGGCATGCATAATACTAATACTAG 57.341 33.333 21.36 0.00 0.00 2.57
824 877 8.391106 GTTGGCATGCATAATACTAATACTAGC 58.609 37.037 21.36 0.00 0.00 3.42
825 878 7.851228 TGGCATGCATAATACTAATACTAGCT 58.149 34.615 21.36 0.00 0.00 3.32
826 879 8.977412 TGGCATGCATAATACTAATACTAGCTA 58.023 33.333 21.36 0.00 0.00 3.32
827 880 9.988815 GGCATGCATAATACTAATACTAGCTAT 57.011 33.333 21.36 0.00 0.00 2.97
839 892 9.998752 ACTAATACTAGCTATGATACTCCCATT 57.001 33.333 0.00 0.00 0.00 3.16
845 898 9.203163 ACTAGCTATGATACTCCCATTATAACC 57.797 37.037 0.00 0.00 0.00 2.85
846 899 9.201989 CTAGCTATGATACTCCCATTATAACCA 57.798 37.037 0.00 0.00 0.00 3.67
847 900 8.083828 AGCTATGATACTCCCATTATAACCAG 57.916 38.462 0.00 0.00 0.00 4.00
848 901 6.763610 GCTATGATACTCCCATTATAACCAGC 59.236 42.308 0.00 0.00 0.00 4.85
849 902 5.499004 TGATACTCCCATTATAACCAGCC 57.501 43.478 0.00 0.00 0.00 4.85
879 932 2.356382 CACAAGTGGCCTGACGTAAAAA 59.644 45.455 3.32 0.00 0.00 1.94
954 1014 0.106569 TGATTGCTTCCCATGCCGAT 60.107 50.000 0.00 0.00 0.00 4.18
980 1040 6.204301 CAGCTAAAATACCTCACATCCATCAG 59.796 42.308 0.00 0.00 0.00 2.90
981 1041 5.049129 GCTAAAATACCTCACATCCATCAGC 60.049 44.000 0.00 0.00 0.00 4.26
1015 1075 1.799917 GCATCATGGCCACATTCGTTG 60.800 52.381 8.16 0.00 34.35 4.10
1035 1095 5.755861 CGTTGGTCTTCTTCTTCTTCTTCTT 59.244 40.000 0.00 0.00 0.00 2.52
1036 1096 6.258947 CGTTGGTCTTCTTCTTCTTCTTCTTT 59.741 38.462 0.00 0.00 0.00 2.52
1161 1236 3.691342 CCGGACGCCACCTTCTCA 61.691 66.667 0.00 0.00 0.00 3.27
1575 1672 1.743623 CTTGTATGACGGCCCGCAA 60.744 57.895 1.23 0.00 0.00 4.85
1890 1987 2.682494 GAGTACCTGCCGTCCCCA 60.682 66.667 0.00 0.00 0.00 4.96
2092 2210 0.290840 CGTCACGTTCGAATACTGCG 59.709 55.000 0.00 1.89 0.00 5.18
2151 2269 2.019156 GCCTACAAGAAGGATGGCACC 61.019 57.143 0.00 0.00 39.15 5.01
2232 2350 4.762251 GGAAACATATATCTCAAGGTGCCC 59.238 45.833 0.00 0.00 0.00 5.36
2287 2420 1.739562 GCCCTCGACTGCAGTCTTG 60.740 63.158 36.78 28.57 42.66 3.02
2294 2427 1.818642 GACTGCAGTCTTGATGGCTT 58.181 50.000 34.54 1.87 41.65 4.35
2513 2679 1.630878 GACCCAGTTCAGGAGGTTCAT 59.369 52.381 0.00 0.00 31.10 2.57
2635 2801 1.739562 GCGGTGAAGGAGCTGACAG 60.740 63.158 0.00 0.00 0.00 3.51
2676 2842 1.153349 GTTCTGGGCGGAGATGACC 60.153 63.158 0.00 0.00 0.00 4.02
2793 2984 1.170919 GGTCGCTCGATAGGCACCTA 61.171 60.000 0.00 0.00 34.31 3.08
2892 3086 2.623418 ACCTCCACCATGAGTGTCTA 57.377 50.000 11.73 0.00 45.74 2.59
3191 3403 1.134699 CAAGGAGCGGCTACAGATGAA 60.135 52.381 15.89 0.00 0.00 2.57
3319 3531 2.897436 TGAAGATCTCCTTGTCATGCG 58.103 47.619 0.00 0.00 34.68 4.73
3372 3587 4.688021 ACGACATCTTCAAGGCTCTTATC 58.312 43.478 0.00 0.00 0.00 1.75
3466 3686 6.303970 CGTTTATTTGAGTGAATGCTGAACAG 59.696 38.462 0.00 0.00 0.00 3.16
3471 3691 5.428496 TGAGTGAATGCTGAACAGAAAAG 57.572 39.130 5.97 0.00 0.00 2.27
3483 3831 5.551233 TGAACAGAAAAGGTAGTGAGATGG 58.449 41.667 0.00 0.00 0.00 3.51
3485 3833 5.153950 ACAGAAAAGGTAGTGAGATGGTC 57.846 43.478 0.00 0.00 0.00 4.02
3494 3842 4.040952 GGTAGTGAGATGGTCAATATGGCT 59.959 45.833 0.00 0.00 38.00 4.75
3526 3874 6.964908 TGCGTGATGTGAAAAGAAAAGATTA 58.035 32.000 0.00 0.00 0.00 1.75
3586 4354 3.430374 CGTTTGCACCTACCTATAGCACT 60.430 47.826 0.00 0.00 34.56 4.40
3589 4357 4.180377 TGCACCTACCTATAGCACTACT 57.820 45.455 0.00 0.00 0.00 2.57
3590 4358 5.314718 TGCACCTACCTATAGCACTACTA 57.685 43.478 0.00 0.00 34.64 1.82
3591 4359 5.314529 TGCACCTACCTATAGCACTACTAG 58.685 45.833 0.00 0.00 33.29 2.57
3606 4374 6.427242 AGCACTACTAGTTGTTTTCTTTAGCC 59.573 38.462 7.27 0.00 0.00 3.93
3701 4470 4.273257 TCCGTGTCACGCGAGCAA 62.273 61.111 20.01 0.00 40.91 3.91
3720 4489 4.576463 AGCAATTGTTTTTGACGAGTCTCT 59.424 37.500 7.40 0.00 0.00 3.10
3730 4499 0.540830 ACGAGTCTCTCTTGGCAGGT 60.541 55.000 0.00 0.00 32.04 4.00
3761 4530 1.890894 CAGACTCGATGGGGACGTT 59.109 57.895 0.00 0.00 0.00 3.99
3763 4532 0.323542 AGACTCGATGGGGACGTTCT 60.324 55.000 0.00 0.00 0.00 3.01
3764 4533 0.100861 GACTCGATGGGGACGTTCTC 59.899 60.000 0.00 0.00 0.00 2.87
3765 4534 0.323542 ACTCGATGGGGACGTTCTCT 60.324 55.000 0.00 0.00 0.00 3.10
3766 4535 0.101399 CTCGATGGGGACGTTCTCTG 59.899 60.000 0.00 0.00 0.00 3.35
3767 4536 1.519455 CGATGGGGACGTTCTCTGC 60.519 63.158 0.00 0.00 0.00 4.26
3768 4537 1.153349 GATGGGGACGTTCTCTGCC 60.153 63.158 0.00 0.00 0.00 4.85
3769 4538 1.613630 ATGGGGACGTTCTCTGCCT 60.614 57.895 0.00 0.00 0.00 4.75
3770 4539 0.325296 ATGGGGACGTTCTCTGCCTA 60.325 55.000 0.00 0.00 0.00 3.93
3771 4540 1.255667 TGGGGACGTTCTCTGCCTAC 61.256 60.000 0.00 0.00 0.00 3.18
3773 4542 0.606604 GGGACGTTCTCTGCCTACAA 59.393 55.000 0.00 0.00 0.00 2.41
3775 4544 2.271800 GGACGTTCTCTGCCTACAATG 58.728 52.381 0.00 0.00 0.00 2.82
3777 4546 3.119245 GGACGTTCTCTGCCTACAATGTA 60.119 47.826 0.00 0.00 0.00 2.29
3799 4568 1.978617 ACGTACGGTGGGTGTAGGG 60.979 63.158 21.06 0.00 33.25 3.53
3800 4569 1.678635 CGTACGGTGGGTGTAGGGA 60.679 63.158 7.57 0.00 0.00 4.20
3801 4570 1.039233 CGTACGGTGGGTGTAGGGAT 61.039 60.000 7.57 0.00 0.00 3.85
3802 4571 0.462789 GTACGGTGGGTGTAGGGATG 59.537 60.000 0.00 0.00 0.00 3.51
3803 4572 0.335705 TACGGTGGGTGTAGGGATGA 59.664 55.000 0.00 0.00 0.00 2.92
3804 4573 0.545787 ACGGTGGGTGTAGGGATGAA 60.546 55.000 0.00 0.00 0.00 2.57
3805 4574 0.616371 CGGTGGGTGTAGGGATGAAA 59.384 55.000 0.00 0.00 0.00 2.69
3806 4575 1.003812 CGGTGGGTGTAGGGATGAAAA 59.996 52.381 0.00 0.00 0.00 2.29
3807 4576 2.443416 GGTGGGTGTAGGGATGAAAAC 58.557 52.381 0.00 0.00 0.00 2.43
3808 4577 2.081462 GTGGGTGTAGGGATGAAAACG 58.919 52.381 0.00 0.00 0.00 3.60
3809 4578 1.003812 TGGGTGTAGGGATGAAAACGG 59.996 52.381 0.00 0.00 0.00 4.44
3810 4579 1.279846 GGGTGTAGGGATGAAAACGGA 59.720 52.381 0.00 0.00 0.00 4.69
3811 4580 2.629051 GGTGTAGGGATGAAAACGGAG 58.371 52.381 0.00 0.00 0.00 4.63
3812 4581 2.007608 GTGTAGGGATGAAAACGGAGC 58.992 52.381 0.00 0.00 0.00 4.70
3813 4582 1.287425 GTAGGGATGAAAACGGAGCG 58.713 55.000 0.00 0.00 0.00 5.03
3814 4583 0.177141 TAGGGATGAAAACGGAGCGG 59.823 55.000 0.00 0.00 0.00 5.52
3815 4584 1.078708 GGGATGAAAACGGAGCGGA 60.079 57.895 0.00 0.00 0.00 5.54
3816 4585 0.675522 GGGATGAAAACGGAGCGGAA 60.676 55.000 0.00 0.00 0.00 4.30
3817 4586 0.727398 GGATGAAAACGGAGCGGAAG 59.273 55.000 0.00 0.00 0.00 3.46
3833 4602 8.126700 CGGAGCGGAAGTATTATATTTGTTTTT 58.873 33.333 0.00 0.00 0.00 1.94
3865 4637 6.974932 TTGCAAAAGCAGAAACAAATACAA 57.025 29.167 0.00 0.00 0.00 2.41
3886 4658 5.634020 ACAAAAACACCGAAAATGAAAACGA 59.366 32.000 0.00 0.00 0.00 3.85
3967 4757 5.003804 AGTGGGCATTAGCGGATATTAAAG 58.996 41.667 0.00 0.00 43.41 1.85
3983 4773 9.981460 GGATATTAAAGACCCCTTGAATCATAT 57.019 33.333 0.00 0.00 35.55 1.78
4006 4798 5.799681 AGGAATGCACACAAAAACAAAAG 57.200 34.783 0.00 0.00 0.00 2.27
4008 4800 5.936956 AGGAATGCACACAAAAACAAAAGAA 59.063 32.000 0.00 0.00 0.00 2.52
4077 4869 8.786826 AGTAATTTAGCACAGTATTGCAGTAA 57.213 30.769 0.00 0.00 45.62 2.24
4104 4896 6.508030 TGGACAATTGCATATAGGGTCTAA 57.492 37.500 5.05 0.00 0.00 2.10
4120 4912 3.194116 GGTCTAATTGAGTACGGGTGTGA 59.806 47.826 0.00 0.00 0.00 3.58
4180 4973 4.773323 TGTGTCATTGTGTGTTGTTTGA 57.227 36.364 0.00 0.00 0.00 2.69
4310 5107 4.785561 TCGTTTTTGTTTTCGTTTCCGTAC 59.214 37.500 0.00 0.00 35.01 3.67
4315 5115 7.578169 TTTTGTTTTCGTTTCCGTACAAAAT 57.422 28.000 0.00 0.00 40.83 1.82
4341 5142 5.534207 TCATTTCCACTTCTGTTTTGCAT 57.466 34.783 0.00 0.00 0.00 3.96
4346 5147 8.776470 CATTTCCACTTCTGTTTTGCATATTTT 58.224 29.630 0.00 0.00 0.00 1.82
4380 5181 7.753309 TTTCATATTTCCTCTCCGTTTTCAA 57.247 32.000 0.00 0.00 0.00 2.69
4387 5188 5.941948 TCCTCTCCGTTTTCAATTTTCTC 57.058 39.130 0.00 0.00 0.00 2.87
4406 5207 1.072015 TCCCGGAAAAGCGGAAAGTTA 59.928 47.619 0.73 0.00 0.00 2.24
4412 5213 3.317149 GGAAAAGCGGAAAGTTACCACTT 59.683 43.478 0.00 0.00 45.89 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.718649 TTAGATTAGCGCATGTTCTTCAC 57.281 39.130 11.47 0.00 0.00 3.18
2 3 6.138761 CCAATTAGATTAGCGCATGTTCTTC 58.861 40.000 11.47 0.00 0.00 2.87
3 4 5.506317 GCCAATTAGATTAGCGCATGTTCTT 60.506 40.000 11.47 0.00 0.00 2.52
5 6 4.222114 GCCAATTAGATTAGCGCATGTTC 58.778 43.478 11.47 0.23 0.00 3.18
6 7 3.004734 GGCCAATTAGATTAGCGCATGTT 59.995 43.478 11.47 0.00 0.00 2.71
7 8 2.554032 GGCCAATTAGATTAGCGCATGT 59.446 45.455 11.47 0.00 0.00 3.21
8 9 2.095059 GGGCCAATTAGATTAGCGCATG 60.095 50.000 11.47 0.00 39.07 4.06
9 10 2.162681 GGGCCAATTAGATTAGCGCAT 58.837 47.619 11.47 0.00 39.07 4.73
10 11 1.604604 GGGCCAATTAGATTAGCGCA 58.395 50.000 11.47 0.00 39.07 6.09
11 12 0.881796 GGGGCCAATTAGATTAGCGC 59.118 55.000 4.39 0.00 38.66 5.92
12 13 1.534729 GGGGGCCAATTAGATTAGCG 58.465 55.000 4.39 0.00 0.00 4.26
28 29 3.371034 CCCACCACTTAAAATTAGGGGG 58.629 50.000 2.29 2.29 40.68 5.40
30 31 2.764010 GCCCCACCACTTAAAATTAGGG 59.236 50.000 0.00 0.00 35.00 3.53
31 32 2.764010 GGCCCCACCACTTAAAATTAGG 59.236 50.000 0.00 0.00 38.86 2.69
32 33 2.764010 GGGCCCCACCACTTAAAATTAG 59.236 50.000 12.23 0.00 42.05 1.73
33 34 2.822697 GGGCCCCACCACTTAAAATTA 58.177 47.619 12.23 0.00 42.05 1.40
34 35 1.651737 GGGCCCCACCACTTAAAATT 58.348 50.000 12.23 0.00 42.05 1.82
35 36 0.613572 CGGGCCCCACCACTTAAAAT 60.614 55.000 18.66 0.00 42.05 1.82
36 37 1.228613 CGGGCCCCACCACTTAAAA 60.229 57.895 18.66 0.00 42.05 1.52
37 38 2.414658 GACGGGCCCCACCACTTAAA 62.415 60.000 18.66 0.00 42.05 1.52
38 39 2.855014 ACGGGCCCCACCACTTAA 60.855 61.111 18.66 0.00 42.05 1.85
39 40 3.324108 GACGGGCCCCACCACTTA 61.324 66.667 18.66 0.00 42.05 2.24
45 46 1.266867 TTAAGTAGGACGGGCCCCAC 61.267 60.000 18.66 10.54 37.37 4.61
46 47 1.080722 TTAAGTAGGACGGGCCCCA 59.919 57.895 18.66 0.00 37.37 4.96
47 48 0.979709 AGTTAAGTAGGACGGGCCCC 60.980 60.000 18.66 1.92 37.37 5.80
48 49 0.177373 CAGTTAAGTAGGACGGGCCC 59.823 60.000 13.57 13.57 37.37 5.80
49 50 1.188863 TCAGTTAAGTAGGACGGGCC 58.811 55.000 0.00 0.00 0.00 5.80
50 51 3.118884 TGATTCAGTTAAGTAGGACGGGC 60.119 47.826 0.00 0.00 0.00 6.13
51 52 4.081862 TGTGATTCAGTTAAGTAGGACGGG 60.082 45.833 0.00 0.00 0.00 5.28
52 53 5.068234 TGTGATTCAGTTAAGTAGGACGG 57.932 43.478 0.00 0.00 0.00 4.79
53 54 5.749109 GGATGTGATTCAGTTAAGTAGGACG 59.251 44.000 0.00 0.00 0.00 4.79
54 55 6.640518 TGGATGTGATTCAGTTAAGTAGGAC 58.359 40.000 0.00 0.00 0.00 3.85
55 56 6.867519 TGGATGTGATTCAGTTAAGTAGGA 57.132 37.500 0.00 0.00 0.00 2.94
56 57 9.613428 TTAATGGATGTGATTCAGTTAAGTAGG 57.387 33.333 0.00 0.00 0.00 3.18
59 60 9.911788 AGATTAATGGATGTGATTCAGTTAAGT 57.088 29.630 0.00 0.00 0.00 2.24
70 71 9.914131 CGAACTATTAGAGATTAATGGATGTGA 57.086 33.333 0.00 0.00 0.00 3.58
71 72 9.698309 ACGAACTATTAGAGATTAATGGATGTG 57.302 33.333 0.00 0.00 0.00 3.21
78 79 9.708092 GGGCTTTACGAACTATTAGAGATTAAT 57.292 33.333 0.00 0.00 0.00 1.40
79 80 8.146412 GGGGCTTTACGAACTATTAGAGATTAA 58.854 37.037 0.00 0.00 0.00 1.40
80 81 7.522725 CGGGGCTTTACGAACTATTAGAGATTA 60.523 40.741 0.00 0.00 0.00 1.75
81 82 6.522946 GGGGCTTTACGAACTATTAGAGATT 58.477 40.000 0.00 0.00 0.00 2.40
82 83 5.278858 CGGGGCTTTACGAACTATTAGAGAT 60.279 44.000 0.00 0.00 0.00 2.75
83 84 4.037208 CGGGGCTTTACGAACTATTAGAGA 59.963 45.833 0.00 0.00 0.00 3.10
84 85 4.296690 CGGGGCTTTACGAACTATTAGAG 58.703 47.826 0.00 0.00 0.00 2.43
85 86 3.491447 GCGGGGCTTTACGAACTATTAGA 60.491 47.826 0.00 0.00 0.00 2.10
86 87 2.798847 GCGGGGCTTTACGAACTATTAG 59.201 50.000 0.00 0.00 0.00 1.73
87 88 2.431782 AGCGGGGCTTTACGAACTATTA 59.568 45.455 0.00 0.00 33.89 0.98
88 89 1.208776 AGCGGGGCTTTACGAACTATT 59.791 47.619 0.00 0.00 33.89 1.73
89 90 0.828677 AGCGGGGCTTTACGAACTAT 59.171 50.000 0.00 0.00 33.89 2.12
90 91 1.473258 TAGCGGGGCTTTACGAACTA 58.527 50.000 0.00 0.00 40.44 2.24
91 92 0.609662 TTAGCGGGGCTTTACGAACT 59.390 50.000 0.00 0.00 40.44 3.01
92 93 1.395954 CTTTAGCGGGGCTTTACGAAC 59.604 52.381 0.00 0.00 40.44 3.95
93 94 1.002315 ACTTTAGCGGGGCTTTACGAA 59.998 47.619 0.00 0.00 40.44 3.85
94 95 0.609662 ACTTTAGCGGGGCTTTACGA 59.390 50.000 0.00 0.00 40.44 3.43
95 96 0.725117 CACTTTAGCGGGGCTTTACG 59.275 55.000 0.00 0.00 40.44 3.18
96 97 0.450583 GCACTTTAGCGGGGCTTTAC 59.549 55.000 0.00 0.00 40.44 2.01
97 98 0.678684 GGCACTTTAGCGGGGCTTTA 60.679 55.000 0.00 0.00 40.44 1.85
98 99 1.977009 GGCACTTTAGCGGGGCTTT 60.977 57.895 0.00 0.00 40.44 3.51
99 100 2.361230 GGCACTTTAGCGGGGCTT 60.361 61.111 0.00 0.00 40.44 4.35
100 101 4.426313 GGGCACTTTAGCGGGGCT 62.426 66.667 0.00 0.00 43.41 5.19
102 103 4.404098 ACGGGCACTTTAGCGGGG 62.404 66.667 0.00 0.00 34.64 5.73
103 104 3.124921 CACGGGCACTTTAGCGGG 61.125 66.667 0.00 0.00 34.64 6.13
104 105 2.358247 ACACGGGCACTTTAGCGG 60.358 61.111 0.00 0.00 34.64 5.52
105 106 1.959226 ACACACGGGCACTTTAGCG 60.959 57.895 0.00 0.00 34.64 4.26
106 107 1.164041 ACACACACGGGCACTTTAGC 61.164 55.000 0.00 0.00 0.00 3.09
107 108 0.586319 CACACACACGGGCACTTTAG 59.414 55.000 0.00 0.00 0.00 1.85
108 109 0.107606 ACACACACACGGGCACTTTA 60.108 50.000 0.00 0.00 0.00 1.85
109 110 1.377987 ACACACACACGGGCACTTT 60.378 52.632 0.00 0.00 0.00 2.66
110 111 2.112198 CACACACACACGGGCACTT 61.112 57.895 0.00 0.00 0.00 3.16
111 112 2.513666 CACACACACACGGGCACT 60.514 61.111 0.00 0.00 0.00 4.40
112 113 2.822255 ACACACACACACGGGCAC 60.822 61.111 0.00 0.00 0.00 5.01
113 114 2.821810 CACACACACACACGGGCA 60.822 61.111 0.00 0.00 0.00 5.36
114 115 2.822255 ACACACACACACACGGGC 60.822 61.111 0.00 0.00 0.00 6.13
115 116 1.743623 ACACACACACACACACGGG 60.744 57.895 0.00 0.00 0.00 5.28
116 117 1.295357 ACACACACACACACACACGG 61.295 55.000 0.00 0.00 0.00 4.94
117 118 1.323235 CTACACACACACACACACACG 59.677 52.381 0.00 0.00 0.00 4.49
118 119 1.062002 GCTACACACACACACACACAC 59.938 52.381 0.00 0.00 0.00 3.82
119 120 1.338200 TGCTACACACACACACACACA 60.338 47.619 0.00 0.00 0.00 3.72
120 121 1.364721 TGCTACACACACACACACAC 58.635 50.000 0.00 0.00 0.00 3.82
121 122 2.323968 ATGCTACACACACACACACA 57.676 45.000 0.00 0.00 0.00 3.72
122 123 3.807622 AGTAATGCTACACACACACACAC 59.192 43.478 0.00 0.00 0.00 3.82
123 124 4.055360 GAGTAATGCTACACACACACACA 58.945 43.478 0.00 0.00 0.00 3.72
124 125 4.055360 TGAGTAATGCTACACACACACAC 58.945 43.478 0.00 0.00 0.00 3.82
125 126 4.329462 TGAGTAATGCTACACACACACA 57.671 40.909 0.00 0.00 0.00 3.72
126 127 5.171476 AGATGAGTAATGCTACACACACAC 58.829 41.667 0.00 0.00 32.39 3.82
127 128 5.047377 TGAGATGAGTAATGCTACACACACA 60.047 40.000 0.00 0.00 32.39 3.72
128 129 5.410924 TGAGATGAGTAATGCTACACACAC 58.589 41.667 0.00 0.00 32.39 3.82
129 130 5.659440 TGAGATGAGTAATGCTACACACA 57.341 39.130 0.00 0.00 32.39 3.72
130 131 6.968131 TTTGAGATGAGTAATGCTACACAC 57.032 37.500 0.00 0.00 32.39 3.82
131 132 7.877612 TCTTTTTGAGATGAGTAATGCTACACA 59.122 33.333 0.00 0.00 33.83 3.72
132 133 8.256611 TCTTTTTGAGATGAGTAATGCTACAC 57.743 34.615 0.00 0.00 0.00 2.90
133 134 7.065085 GCTCTTTTTGAGATGAGTAATGCTACA 59.935 37.037 0.00 0.00 45.39 2.74
134 135 7.065085 TGCTCTTTTTGAGATGAGTAATGCTAC 59.935 37.037 0.00 0.00 45.39 3.58
135 136 7.105588 TGCTCTTTTTGAGATGAGTAATGCTA 58.894 34.615 0.00 0.00 45.39 3.49
136 137 5.942236 TGCTCTTTTTGAGATGAGTAATGCT 59.058 36.000 0.00 0.00 45.39 3.79
137 138 6.187125 TGCTCTTTTTGAGATGAGTAATGC 57.813 37.500 0.00 0.00 45.39 3.56
138 139 9.073368 CAAATGCTCTTTTTGAGATGAGTAATG 57.927 33.333 0.00 0.00 45.39 1.90
139 140 8.800332 ACAAATGCTCTTTTTGAGATGAGTAAT 58.200 29.630 3.39 0.00 45.39 1.89
140 141 8.169977 ACAAATGCTCTTTTTGAGATGAGTAA 57.830 30.769 3.39 0.00 45.39 2.24
141 142 7.750229 ACAAATGCTCTTTTTGAGATGAGTA 57.250 32.000 3.39 0.00 45.39 2.59
142 143 6.645790 ACAAATGCTCTTTTTGAGATGAGT 57.354 33.333 3.39 0.00 45.39 3.41
143 144 6.746364 GCTACAAATGCTCTTTTTGAGATGAG 59.254 38.462 3.39 0.00 45.39 2.90
144 145 6.432162 AGCTACAAATGCTCTTTTTGAGATGA 59.568 34.615 3.39 0.00 45.39 2.92
150 151 6.364435 GGAAGAAGCTACAAATGCTCTTTTTG 59.636 38.462 0.00 0.00 40.22 2.44
167 168 1.743252 CCTGCACGGAGGAAGAAGC 60.743 63.158 0.00 0.00 34.69 3.86
182 183 4.087892 CCTCCTGGACACGGCCTG 62.088 72.222 0.00 0.21 34.57 4.85
190 191 0.685458 ATTTGCATGCCCTCCTGGAC 60.685 55.000 16.68 0.00 35.39 4.02
191 192 0.396139 GATTTGCATGCCCTCCTGGA 60.396 55.000 16.68 0.00 35.39 3.86
200 201 6.657836 AAGCTAAAAATCTGATTTGCATGC 57.342 33.333 15.80 11.82 31.77 4.06
228 229 7.327975 GGTTGAAGGGTTGGGATTAAATTTAG 58.672 38.462 0.00 0.00 0.00 1.85
252 254 1.215173 TCATTAGGGGCATGACAAGGG 59.785 52.381 0.00 0.00 0.00 3.95
385 409 1.735360 GTGCAAGTTGAGCCTGCAA 59.265 52.632 7.16 0.00 37.24 4.08
447 486 6.582636 CGCCATAGTACCATATCATACCATT 58.417 40.000 0.00 0.00 0.00 3.16
470 509 0.032678 ACTTGTGACTCACTCCTGCG 59.967 55.000 10.54 0.00 35.11 5.18
500 546 5.684550 TGATACGCTCGTTCATACTGTAT 57.315 39.130 0.00 0.00 0.00 2.29
503 549 2.721603 GCTGATACGCTCGTTCATACTG 59.278 50.000 0.00 0.00 0.00 2.74
504 550 2.357952 TGCTGATACGCTCGTTCATACT 59.642 45.455 0.00 0.00 0.00 2.12
505 551 2.721603 CTGCTGATACGCTCGTTCATAC 59.278 50.000 0.00 1.93 0.00 2.39
506 552 2.357952 ACTGCTGATACGCTCGTTCATA 59.642 45.455 0.00 0.00 0.00 2.15
507 553 1.135139 ACTGCTGATACGCTCGTTCAT 59.865 47.619 0.00 0.00 0.00 2.57
508 554 0.526211 ACTGCTGATACGCTCGTTCA 59.474 50.000 0.00 4.08 0.00 3.18
509 555 1.192793 GACTGCTGATACGCTCGTTC 58.807 55.000 0.00 0.00 0.00 3.95
515 563 2.031508 GGAGACTAGACTGCTGATACGC 60.032 54.545 6.48 0.00 0.00 4.42
520 568 0.034960 AGCGGAGACTAGACTGCTGA 60.035 55.000 16.81 0.00 45.35 4.26
550 603 9.680315 CAGCCTAAACTAACTCTATGTGTATAC 57.320 37.037 0.00 0.00 0.00 1.47
553 606 6.666546 ACCAGCCTAAACTAACTCTATGTGTA 59.333 38.462 0.00 0.00 0.00 2.90
569 622 3.847780 ACTACCCATTACAACCAGCCTAA 59.152 43.478 0.00 0.00 0.00 2.69
570 623 3.456842 ACTACCCATTACAACCAGCCTA 58.543 45.455 0.00 0.00 0.00 3.93
571 624 2.275466 ACTACCCATTACAACCAGCCT 58.725 47.619 0.00 0.00 0.00 4.58
572 625 2.801077 ACTACCCATTACAACCAGCC 57.199 50.000 0.00 0.00 0.00 4.85
573 626 9.216117 CTTATAATACTACCCATTACAACCAGC 57.784 37.037 0.00 0.00 0.00 4.85
615 668 9.696572 GGGAGGTAGTATCATACACTAATATCA 57.303 37.037 0.00 0.00 30.54 2.15
616 669 9.924010 AGGGAGGTAGTATCATACACTAATATC 57.076 37.037 0.00 0.00 30.54 1.63
619 672 8.902881 ACTAGGGAGGTAGTATCATACACTAAT 58.097 37.037 0.00 0.00 31.14 1.73
620 673 8.162085 CACTAGGGAGGTAGTATCATACACTAA 58.838 40.741 0.00 0.00 31.73 2.24
621 674 7.687388 CACTAGGGAGGTAGTATCATACACTA 58.313 42.308 0.00 0.00 31.73 2.74
622 675 6.544650 CACTAGGGAGGTAGTATCATACACT 58.455 44.000 0.00 0.00 31.73 3.55
623 676 5.183522 GCACTAGGGAGGTAGTATCATACAC 59.816 48.000 0.00 0.00 31.73 2.90
624 677 5.163023 TGCACTAGGGAGGTAGTATCATACA 60.163 44.000 0.00 0.00 31.73 2.29
625 678 5.322754 TGCACTAGGGAGGTAGTATCATAC 58.677 45.833 0.00 0.00 31.73 2.39
626 679 5.594199 TGCACTAGGGAGGTAGTATCATA 57.406 43.478 0.00 0.00 31.73 2.15
627 680 4.471078 TGCACTAGGGAGGTAGTATCAT 57.529 45.455 0.00 0.00 31.73 2.45
628 681 3.965470 TGCACTAGGGAGGTAGTATCA 57.035 47.619 0.00 0.00 31.73 2.15
629 682 7.999545 TGATATATGCACTAGGGAGGTAGTATC 59.000 40.741 0.00 0.00 31.73 2.24
630 683 7.883823 TGATATATGCACTAGGGAGGTAGTAT 58.116 38.462 0.00 0.00 31.73 2.12
631 684 7.280044 TGATATATGCACTAGGGAGGTAGTA 57.720 40.000 0.00 0.00 31.73 1.82
632 685 6.153942 TGATATATGCACTAGGGAGGTAGT 57.846 41.667 0.00 0.00 33.25 2.73
633 686 8.801299 CATATGATATATGCACTAGGGAGGTAG 58.199 40.741 0.00 0.00 0.00 3.18
634 687 7.233553 GCATATGATATATGCACTAGGGAGGTA 59.766 40.741 22.30 0.00 46.89 3.08
635 688 6.042552 GCATATGATATATGCACTAGGGAGGT 59.957 42.308 22.30 0.00 46.89 3.85
636 689 6.462500 GCATATGATATATGCACTAGGGAGG 58.538 44.000 22.30 0.00 46.89 4.30
670 723 8.832521 CATGCATGGCAATAAATAAAGTCATTT 58.167 29.630 19.40 0.00 43.62 2.32
671 724 8.205512 TCATGCATGGCAATAAATAAAGTCATT 58.794 29.630 25.97 0.00 43.62 2.57
672 725 7.654520 GTCATGCATGGCAATAAATAAAGTCAT 59.345 33.333 26.04 0.00 43.62 3.06
673 726 6.979817 GTCATGCATGGCAATAAATAAAGTCA 59.020 34.615 26.04 0.00 43.62 3.41
674 727 6.979817 TGTCATGCATGGCAATAAATAAAGTC 59.020 34.615 30.82 0.00 43.62 3.01
675 728 6.757947 GTGTCATGCATGGCAATAAATAAAGT 59.242 34.615 34.01 0.00 44.94 2.66
676 729 6.757478 TGTGTCATGCATGGCAATAAATAAAG 59.243 34.615 34.01 0.00 44.94 1.85
677 730 6.637657 TGTGTCATGCATGGCAATAAATAAA 58.362 32.000 34.01 6.82 44.94 1.40
678 731 6.218108 TGTGTCATGCATGGCAATAAATAA 57.782 33.333 34.01 7.61 44.94 1.40
679 732 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
680 733 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
681 734 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
682 735 4.888823 AGTATGTGTCATGCATGGCAATAA 59.111 37.500 34.01 22.53 44.94 1.40
683 736 4.463070 AGTATGTGTCATGCATGGCAATA 58.537 39.130 34.01 26.44 44.94 1.90
684 737 3.293337 AGTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
685 738 2.725637 AGTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
686 739 2.423446 AGTATGTGTCATGCATGGCA 57.577 45.000 29.45 29.45 44.86 4.92
687 740 3.249320 CACTAGTATGTGTCATGCATGGC 59.751 47.826 24.40 24.40 33.61 4.40
688 741 4.445453 ACACTAGTATGTGTCATGCATGG 58.555 43.478 25.97 8.61 46.90 3.66
689 742 5.176406 GCTACACTAGTATGTGTCATGCATG 59.824 44.000 21.07 21.07 46.90 4.06
690 743 5.163416 TGCTACACTAGTATGTGTCATGCAT 60.163 40.000 3.46 0.00 46.90 3.96
691 744 4.159506 TGCTACACTAGTATGTGTCATGCA 59.840 41.667 3.46 10.15 46.90 3.96
692 745 4.682787 TGCTACACTAGTATGTGTCATGC 58.317 43.478 3.46 8.05 46.90 4.06
693 746 7.776933 AAATGCTACACTAGTATGTGTCATG 57.223 36.000 3.46 0.00 46.90 3.07
703 756 9.856488 CCGTATCATAATAAATGCTACACTAGT 57.144 33.333 0.00 0.00 0.00 2.57
704 757 9.856488 ACCGTATCATAATAAATGCTACACTAG 57.144 33.333 0.00 0.00 0.00 2.57
759 812 9.911788 ATGAGGTGACATAGAATTAAATGAAGT 57.088 29.630 6.52 0.00 0.00 3.01
761 814 9.904198 TGATGAGGTGACATAGAATTAAATGAA 57.096 29.630 6.52 0.00 0.00 2.57
762 815 9.904198 TTGATGAGGTGACATAGAATTAAATGA 57.096 29.630 6.52 0.00 0.00 2.57
765 818 9.739276 ACTTTGATGAGGTGACATAGAATTAAA 57.261 29.630 0.00 0.00 0.00 1.52
766 819 9.739276 AACTTTGATGAGGTGACATAGAATTAA 57.261 29.630 0.00 0.00 0.00 1.40
767 820 9.166173 CAACTTTGATGAGGTGACATAGAATTA 57.834 33.333 0.00 0.00 36.43 1.40
768 821 7.667219 ACAACTTTGATGAGGTGACATAGAATT 59.333 33.333 0.00 0.00 36.43 2.17
769 822 7.170965 ACAACTTTGATGAGGTGACATAGAAT 58.829 34.615 0.00 0.00 36.43 2.40
770 823 6.533730 ACAACTTTGATGAGGTGACATAGAA 58.466 36.000 0.00 0.00 36.43 2.10
771 824 6.014242 AGACAACTTTGATGAGGTGACATAGA 60.014 38.462 0.00 0.00 36.43 1.98
772 825 6.169094 AGACAACTTTGATGAGGTGACATAG 58.831 40.000 0.00 0.00 36.43 2.23
773 826 6.114187 AGACAACTTTGATGAGGTGACATA 57.886 37.500 0.00 0.00 36.43 2.29
774 827 4.978099 AGACAACTTTGATGAGGTGACAT 58.022 39.130 0.00 0.00 36.43 3.06
775 828 4.422073 AGACAACTTTGATGAGGTGACA 57.578 40.909 0.00 0.00 36.43 3.58
776 829 5.542779 ACTAGACAACTTTGATGAGGTGAC 58.457 41.667 0.00 0.00 36.43 3.67
777 830 5.808366 ACTAGACAACTTTGATGAGGTGA 57.192 39.130 0.00 0.00 36.43 4.02
778 831 5.180117 CCAACTAGACAACTTTGATGAGGTG 59.820 44.000 0.00 0.00 40.24 4.00
779 832 5.308825 CCAACTAGACAACTTTGATGAGGT 58.691 41.667 0.00 0.00 0.00 3.85
780 833 4.154918 GCCAACTAGACAACTTTGATGAGG 59.845 45.833 0.00 0.00 0.00 3.86
781 834 4.756642 TGCCAACTAGACAACTTTGATGAG 59.243 41.667 0.00 0.00 0.00 2.90
782 835 4.713553 TGCCAACTAGACAACTTTGATGA 58.286 39.130 0.00 0.00 0.00 2.92
783 836 5.396484 CATGCCAACTAGACAACTTTGATG 58.604 41.667 0.00 0.00 0.00 3.07
784 837 4.082571 GCATGCCAACTAGACAACTTTGAT 60.083 41.667 6.36 0.00 0.00 2.57
785 838 3.253188 GCATGCCAACTAGACAACTTTGA 59.747 43.478 6.36 0.00 0.00 2.69
786 839 3.004629 TGCATGCCAACTAGACAACTTTG 59.995 43.478 16.68 0.00 0.00 2.77
787 840 3.221771 TGCATGCCAACTAGACAACTTT 58.778 40.909 16.68 0.00 0.00 2.66
788 841 2.862541 TGCATGCCAACTAGACAACTT 58.137 42.857 16.68 0.00 0.00 2.66
789 842 2.566833 TGCATGCCAACTAGACAACT 57.433 45.000 16.68 0.00 0.00 3.16
790 843 4.963276 TTATGCATGCCAACTAGACAAC 57.037 40.909 16.68 0.00 0.00 3.32
791 844 6.356556 AGTATTATGCATGCCAACTAGACAA 58.643 36.000 16.68 0.00 0.00 3.18
792 845 5.928976 AGTATTATGCATGCCAACTAGACA 58.071 37.500 16.68 0.00 0.00 3.41
793 846 7.962964 TTAGTATTATGCATGCCAACTAGAC 57.037 36.000 16.68 4.77 0.00 2.59
794 847 9.653287 GTATTAGTATTATGCATGCCAACTAGA 57.347 33.333 16.68 0.00 0.00 2.43
795 848 9.658799 AGTATTAGTATTATGCATGCCAACTAG 57.341 33.333 16.68 0.00 0.00 2.57
797 850 9.658799 CTAGTATTAGTATTATGCATGCCAACT 57.341 33.333 16.68 13.02 0.00 3.16
798 851 8.391106 GCTAGTATTAGTATTATGCATGCCAAC 58.609 37.037 16.68 6.08 0.00 3.77
799 852 8.321353 AGCTAGTATTAGTATTATGCATGCCAA 58.679 33.333 16.68 9.84 0.00 4.52
800 853 7.851228 AGCTAGTATTAGTATTATGCATGCCA 58.149 34.615 16.68 3.52 0.00 4.92
801 854 9.988815 ATAGCTAGTATTAGTATTATGCATGCC 57.011 33.333 16.68 0.00 0.00 4.40
813 866 9.998752 AATGGGAGTATCATAGCTAGTATTAGT 57.001 33.333 0.00 0.00 36.25 2.24
819 872 9.203163 GGTTATAATGGGAGTATCATAGCTAGT 57.797 37.037 0.00 0.00 36.25 2.57
820 873 9.201989 TGGTTATAATGGGAGTATCATAGCTAG 57.798 37.037 0.00 0.00 36.25 3.42
821 874 9.201989 CTGGTTATAATGGGAGTATCATAGCTA 57.798 37.037 0.00 0.00 36.25 3.32
822 875 7.365117 GCTGGTTATAATGGGAGTATCATAGCT 60.365 40.741 0.00 0.00 36.25 3.32
823 876 6.763610 GCTGGTTATAATGGGAGTATCATAGC 59.236 42.308 0.00 0.00 36.25 2.97
824 877 7.126421 AGGCTGGTTATAATGGGAGTATCATAG 59.874 40.741 0.00 0.00 36.25 2.23
825 878 6.965866 AGGCTGGTTATAATGGGAGTATCATA 59.034 38.462 0.00 0.00 36.25 2.15
826 879 5.792712 AGGCTGGTTATAATGGGAGTATCAT 59.207 40.000 0.00 0.00 36.25 2.45
827 880 5.162637 AGGCTGGTTATAATGGGAGTATCA 58.837 41.667 0.00 0.00 36.25 2.15
828 881 5.763876 AGGCTGGTTATAATGGGAGTATC 57.236 43.478 0.00 0.00 0.00 2.24
829 882 7.257053 CCTTAAGGCTGGTTATAATGGGAGTAT 60.257 40.741 9.00 0.00 0.00 2.12
830 883 6.043938 CCTTAAGGCTGGTTATAATGGGAGTA 59.956 42.308 9.00 0.00 0.00 2.59
831 884 5.163088 CCTTAAGGCTGGTTATAATGGGAGT 60.163 44.000 9.00 0.00 0.00 3.85
832 885 5.073144 TCCTTAAGGCTGGTTATAATGGGAG 59.927 44.000 17.32 0.00 34.44 4.30
833 886 4.979039 TCCTTAAGGCTGGTTATAATGGGA 59.021 41.667 17.32 0.00 34.44 4.37
834 887 5.319043 TCCTTAAGGCTGGTTATAATGGG 57.681 43.478 17.32 0.00 34.44 4.00
835 888 6.039382 GTGTTCCTTAAGGCTGGTTATAATGG 59.961 42.308 17.32 0.00 34.44 3.16
836 889 6.601613 TGTGTTCCTTAAGGCTGGTTATAATG 59.398 38.462 17.32 0.00 34.44 1.90
837 890 6.727394 TGTGTTCCTTAAGGCTGGTTATAAT 58.273 36.000 17.32 0.00 34.44 1.28
838 891 6.129414 TGTGTTCCTTAAGGCTGGTTATAA 57.871 37.500 17.32 0.10 34.44 0.98
839 892 5.765576 TGTGTTCCTTAAGGCTGGTTATA 57.234 39.130 17.32 0.00 34.44 0.98
840 893 4.650972 TGTGTTCCTTAAGGCTGGTTAT 57.349 40.909 17.32 0.00 34.44 1.89
841 894 4.141344 ACTTGTGTTCCTTAAGGCTGGTTA 60.141 41.667 17.32 0.00 34.44 2.85
842 895 3.222603 CTTGTGTTCCTTAAGGCTGGTT 58.777 45.455 17.32 0.00 34.44 3.67
843 896 2.174854 ACTTGTGTTCCTTAAGGCTGGT 59.825 45.455 17.32 5.62 34.44 4.00
844 897 2.554032 CACTTGTGTTCCTTAAGGCTGG 59.446 50.000 17.32 5.04 34.44 4.85
845 898 2.554032 CCACTTGTGTTCCTTAAGGCTG 59.446 50.000 17.32 4.07 34.44 4.85
846 899 2.863809 CCACTTGTGTTCCTTAAGGCT 58.136 47.619 17.32 0.00 34.44 4.58
847 900 1.269723 GCCACTTGTGTTCCTTAAGGC 59.730 52.381 17.32 4.37 34.44 4.35
848 901 1.886542 GGCCACTTGTGTTCCTTAAGG 59.113 52.381 15.98 15.98 0.00 2.69
849 902 2.554032 CAGGCCACTTGTGTTCCTTAAG 59.446 50.000 5.01 0.00 0.00 1.85
900 953 6.538945 TGCATTCATACTACCTGTAGTTCA 57.461 37.500 14.63 0.00 43.35 3.18
954 1014 5.692115 TGGATGTGAGGTATTTTAGCTGA 57.308 39.130 0.00 0.00 36.51 4.26
1015 1075 6.203915 GGACAAAGAAGAAGAAGAAGAAGACC 59.796 42.308 0.00 0.00 0.00 3.85
1125 1200 4.410400 GACACCAGGAAGGGCCGG 62.410 72.222 0.00 0.00 43.89 6.13
1161 1236 4.496336 GCTGGGAGGAAGCCGCAT 62.496 66.667 0.00 0.00 34.45 4.73
1183 1264 2.094649 CGGAGAAGTAGAAGGCGTTCTT 60.095 50.000 25.24 9.14 40.35 2.52
1738 1835 2.658593 CTCGATGGTTAGCCGCCG 60.659 66.667 3.63 3.63 37.67 6.46
1980 2077 4.332637 GTGCTGCAGTTGGTGGCG 62.333 66.667 16.64 0.00 0.00 5.69
1981 2078 4.332637 CGTGCTGCAGTTGGTGGC 62.333 66.667 16.64 0.00 0.00 5.01
2151 2269 3.599285 TTTCGGGTAGCACTGGCCG 62.599 63.158 0.00 0.00 42.56 6.13
2232 2350 2.432628 GAGGCGTTGAGGTCGGTG 60.433 66.667 0.00 0.00 0.00 4.94
2294 2427 1.444250 GGGTCGATGGCCGTATCAA 59.556 57.895 0.00 0.00 39.75 2.57
2513 2679 4.459337 TCACTTTCTTGAGCTCTCGATACA 59.541 41.667 16.19 0.00 0.00 2.29
2676 2842 1.165270 GGTTGATCCTCCCAAACACG 58.835 55.000 0.00 0.00 31.85 4.49
2793 2984 1.449246 GCTGCTGTCCTCGCTGAAT 60.449 57.895 0.00 0.00 0.00 2.57
3252 3464 0.882042 ACTGTCCGTTCAGCTTGCTG 60.882 55.000 15.74 15.74 38.84 4.41
3319 3531 1.958902 CTGCTGCTCCTCTCCTCCAC 61.959 65.000 0.00 0.00 0.00 4.02
3372 3587 4.829518 TCCTCGTCATCGCACGCG 62.830 66.667 3.53 3.53 39.74 6.01
3452 3672 4.574599 ACCTTTTCTGTTCAGCATTCAC 57.425 40.909 0.00 0.00 0.00 3.18
3466 3686 7.227512 CCATATTGACCATCTCACTACCTTTTC 59.772 40.741 0.00 0.00 0.00 2.29
3471 3691 4.040952 AGCCATATTGACCATCTCACTACC 59.959 45.833 0.00 0.00 0.00 3.18
3483 3831 3.185188 CGCATGTAGACAGCCATATTGAC 59.815 47.826 0.00 0.00 0.00 3.18
3485 3833 3.059393 CACGCATGTAGACAGCCATATTG 60.059 47.826 0.00 0.00 0.00 1.90
3494 3842 3.311486 TTCACATCACGCATGTAGACA 57.689 42.857 0.47 0.00 44.60 3.41
3526 3874 4.743644 GTCAAGTAGTGCACGTCTAACTTT 59.256 41.667 12.01 0.00 0.00 2.66
3534 3882 2.621998 ACTGTAGTCAAGTAGTGCACGT 59.378 45.455 12.01 2.47 0.00 4.49
3589 4357 7.168469 GCGAAAAATGGCTAAAGAAAACAACTA 59.832 33.333 0.00 0.00 0.00 2.24
3590 4358 6.019075 GCGAAAAATGGCTAAAGAAAACAACT 60.019 34.615 0.00 0.00 0.00 3.16
3591 4359 6.126741 GCGAAAAATGGCTAAAGAAAACAAC 58.873 36.000 0.00 0.00 0.00 3.32
3606 4374 2.499896 GTCTCTGCTTCGCGAAAAATG 58.500 47.619 23.54 12.15 0.00 2.32
3677 4446 2.734723 CGTGACACGGACAGGCAG 60.735 66.667 20.26 0.00 38.08 4.85
3701 4470 5.237344 CCAAGAGAGACTCGTCAAAAACAAT 59.763 40.000 0.00 0.00 35.36 2.71
3720 4489 3.497115 TGCCACCACCTGCCAAGA 61.497 61.111 0.00 0.00 0.00 3.02
3730 4499 4.314440 GTCTGCTCCGTGCCACCA 62.314 66.667 0.00 0.00 42.00 4.17
3744 4513 0.323542 AGAACGTCCCCATCGAGTCT 60.324 55.000 0.00 0.00 0.00 3.24
3761 4530 4.242475 CGTGTTTACATTGTAGGCAGAGA 58.758 43.478 0.00 0.00 0.00 3.10
3763 4532 3.997762 ACGTGTTTACATTGTAGGCAGA 58.002 40.909 0.00 0.00 0.00 4.26
3764 4533 4.201551 CGTACGTGTTTACATTGTAGGCAG 60.202 45.833 7.22 0.00 0.00 4.85
3765 4534 3.674281 CGTACGTGTTTACATTGTAGGCA 59.326 43.478 7.22 0.00 0.00 4.75
3766 4535 3.061161 CCGTACGTGTTTACATTGTAGGC 59.939 47.826 15.21 0.00 30.82 3.93
3767 4536 4.090354 CACCGTACGTGTTTACATTGTAGG 59.910 45.833 15.21 9.23 37.73 3.18
3768 4537 4.090354 CCACCGTACGTGTTTACATTGTAG 59.910 45.833 15.21 0.00 41.26 2.74
3769 4538 3.986572 CCACCGTACGTGTTTACATTGTA 59.013 43.478 15.21 0.00 41.26 2.41
3770 4539 2.801679 CCACCGTACGTGTTTACATTGT 59.198 45.455 15.21 0.00 41.26 2.71
3771 4540 2.158058 CCCACCGTACGTGTTTACATTG 59.842 50.000 15.21 0.00 41.26 2.82
3773 4542 1.344114 ACCCACCGTACGTGTTTACAT 59.656 47.619 15.21 0.00 41.26 2.29
3775 4544 1.139163 CACCCACCGTACGTGTTTAC 58.861 55.000 15.21 0.00 41.26 2.01
3777 4546 0.749649 TACACCCACCGTACGTGTTT 59.250 50.000 15.21 1.91 41.26 2.83
3796 4565 1.078426 CCGCTCCGTTTTCATCCCT 60.078 57.895 0.00 0.00 0.00 4.20
3799 4568 1.439679 ACTTCCGCTCCGTTTTCATC 58.560 50.000 0.00 0.00 0.00 2.92
3800 4569 2.754946 TACTTCCGCTCCGTTTTCAT 57.245 45.000 0.00 0.00 0.00 2.57
3801 4570 2.754946 ATACTTCCGCTCCGTTTTCA 57.245 45.000 0.00 0.00 0.00 2.69
3802 4571 7.417496 AATATAATACTTCCGCTCCGTTTTC 57.583 36.000 0.00 0.00 0.00 2.29
3803 4572 7.281549 ACAAATATAATACTTCCGCTCCGTTTT 59.718 33.333 0.00 0.00 0.00 2.43
3804 4573 6.764560 ACAAATATAATACTTCCGCTCCGTTT 59.235 34.615 0.00 0.00 0.00 3.60
3805 4574 6.285990 ACAAATATAATACTTCCGCTCCGTT 58.714 36.000 0.00 0.00 0.00 4.44
3806 4575 5.850614 ACAAATATAATACTTCCGCTCCGT 58.149 37.500 0.00 0.00 0.00 4.69
3807 4576 6.780706 AACAAATATAATACTTCCGCTCCG 57.219 37.500 0.00 0.00 0.00 4.63
3865 4637 6.707599 TTTCGTTTTCATTTTCGGTGTTTT 57.292 29.167 0.00 0.00 0.00 2.43
3886 4658 7.331193 GTGTCTGTTTCCGATAGTATCTGTTTT 59.669 37.037 8.49 0.00 0.00 2.43
3899 4671 1.006571 GCCTCGTGTCTGTTTCCGA 60.007 57.895 0.00 0.00 0.00 4.55
3967 4757 5.649831 GCATTCCTATATGATTCAAGGGGTC 59.350 44.000 3.59 0.00 0.00 4.46
3983 4773 6.634805 TCTTTTGTTTTTGTGTGCATTCCTA 58.365 32.000 0.00 0.00 0.00 2.94
4006 4798 9.683069 CTAGCCATGTTACCAATTCATTAATTC 57.317 33.333 0.00 0.00 32.87 2.17
4008 4800 8.995027 TCTAGCCATGTTACCAATTCATTAAT 57.005 30.769 0.00 0.00 0.00 1.40
4057 4849 8.620416 CCAATATTACTGCAATACTGTGCTAAA 58.380 33.333 0.00 0.00 45.17 1.85
4077 4869 7.702785 AGACCCTATATGCAATTGTCCAATAT 58.297 34.615 7.40 8.35 0.00 1.28
4104 4896 5.443283 TCTACTATCACACCCGTACTCAAT 58.557 41.667 0.00 0.00 0.00 2.57
4120 4912 9.566432 GATCATTTGAATCCCAACTTCTACTAT 57.434 33.333 0.00 0.00 33.85 2.12
4258 5052 2.920724 TTTCGGTGGAACAGACATGA 57.079 45.000 0.00 0.00 41.81 3.07
4315 5115 7.495901 TGCAAAACAGAAGTGGAAATGAAATA 58.504 30.769 0.00 0.00 0.00 1.40
4346 5147 8.458843 GGAGAGGAAATATGAAAACGAAAATGA 58.541 33.333 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.