Multiple sequence alignment - TraesCS1B01G371600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G371600 chr1B 100.000 2345 0 0 1 2345 601266754 601269098 0.000000e+00 4331.0
1 TraesCS1B01G371600 chr1B 79.363 659 60 33 19 646 601252204 601252817 6.070000e-106 394.0
2 TraesCS1B01G371600 chr1B 81.917 459 33 11 885 1343 601253386 601253794 2.230000e-90 342.0
3 TraesCS1B01G371600 chr1B 86.864 236 21 1 1 236 601255816 601256041 2.990000e-64 255.0
4 TraesCS1B01G371600 chr1B 89.381 113 2 6 674 777 601253226 601253337 1.460000e-27 134.0
5 TraesCS1B01G371600 chr1B 85.000 120 8 4 184 296 601242896 601243012 1.900000e-21 113.0
6 TraesCS1B01G371600 chr1B 97.778 45 1 0 1292 1336 598926111 598926155 6.950000e-11 78.7
7 TraesCS1B01G371600 chr1B 100.000 28 0 0 100 127 601242839 601242866 4.000000e-03 52.8
8 TraesCS1B01G371600 chr1D 86.327 2238 146 78 187 2345 443168989 443166833 0.000000e+00 2290.0
9 TraesCS1B01G371600 chr1D 86.268 284 23 7 19 301 443181151 443180883 6.340000e-76 294.0
10 TraesCS1B01G371600 chr1D 94.340 106 6 0 19 124 443169108 443169003 1.860000e-36 163.0
11 TraesCS1B01G371600 chr1A 84.680 1919 116 67 520 2345 535857398 535859231 0.000000e+00 1751.0
12 TraesCS1B01G371600 chr1A 87.279 283 29 5 19 301 535770543 535770818 1.350000e-82 316.0
13 TraesCS1B01G371600 chr1A 81.857 237 26 10 518 742 535854790 535855021 1.430000e-42 183.0
14 TraesCS1B01G371600 chr3B 87.075 147 19 0 1197 1343 734686483 734686337 1.440000e-37 167.0
15 TraesCS1B01G371600 chr3A 87.143 140 18 0 1204 1343 690079902 690079763 2.410000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G371600 chr1B 601266754 601269098 2344 False 4331.00 4331 100.00000 1 2345 1 chr1B.!!$F2 2344
1 TraesCS1B01G371600 chr1B 601252204 601256041 3837 False 281.25 394 84.38125 1 1343 4 chr1B.!!$F4 1342
2 TraesCS1B01G371600 chr1D 443166833 443169108 2275 True 1226.50 2290 90.33350 19 2345 2 chr1D.!!$R2 2326
3 TraesCS1B01G371600 chr1A 535854790 535859231 4441 False 967.00 1751 83.26850 518 2345 2 chr1A.!!$F2 1827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.095935 CTCCAAATCAGACGCAAGCG 59.904 55.0 13.5 13.5 46.03 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 5261 0.251787 GCTGGATTCCCACCCAAGTT 60.252 55.0 0.0 0.0 37.58 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.202533 CCCACTCGTTTGACAGTGTCT 60.203 52.381 23.29 0.00 38.74 3.41
65 66 1.795768 GTGTCTCCAAATCAGACGCA 58.204 50.000 8.22 0.00 46.42 5.24
69 70 0.095935 CTCCAAATCAGACGCAAGCG 59.904 55.000 13.50 13.50 46.03 4.68
124 144 7.093902 ACCGATTAATCTCTTGTGTCAGTAGAA 60.094 37.037 13.45 0.00 0.00 2.10
125 145 7.759886 CCGATTAATCTCTTGTGTCAGTAGAAA 59.240 37.037 13.45 0.00 0.00 2.52
126 146 9.140286 CGATTAATCTCTTGTGTCAGTAGAAAA 57.860 33.333 13.45 0.00 0.00 2.29
131 151 7.818997 TCTCTTGTGTCAGTAGAAAACTAGA 57.181 36.000 0.00 0.00 35.76 2.43
132 152 8.234136 TCTCTTGTGTCAGTAGAAAACTAGAA 57.766 34.615 0.00 0.00 35.76 2.10
133 153 8.692710 TCTCTTGTGTCAGTAGAAAACTAGAAA 58.307 33.333 0.00 0.00 35.76 2.52
134 154 9.314321 CTCTTGTGTCAGTAGAAAACTAGAAAA 57.686 33.333 0.00 0.00 35.76 2.29
135 155 9.095065 TCTTGTGTCAGTAGAAAACTAGAAAAC 57.905 33.333 0.00 0.00 35.76 2.43
136 156 7.459394 TGTGTCAGTAGAAAACTAGAAAACG 57.541 36.000 0.00 0.00 35.76 3.60
137 157 7.259882 TGTGTCAGTAGAAAACTAGAAAACGA 58.740 34.615 0.00 0.00 35.76 3.85
138 158 7.924412 TGTGTCAGTAGAAAACTAGAAAACGAT 59.076 33.333 0.00 0.00 35.76 3.73
139 159 8.426251 GTGTCAGTAGAAAACTAGAAAACGATC 58.574 37.037 0.00 0.00 35.76 3.69
140 160 7.597743 TGTCAGTAGAAAACTAGAAAACGATCC 59.402 37.037 0.00 0.00 35.76 3.36
141 161 7.063191 GTCAGTAGAAAACTAGAAAACGATCCC 59.937 40.741 0.00 0.00 35.76 3.85
142 162 7.039223 TCAGTAGAAAACTAGAAAACGATCCCT 60.039 37.037 0.00 0.00 35.76 4.20
143 163 7.275999 CAGTAGAAAACTAGAAAACGATCCCTC 59.724 40.741 0.00 0.00 35.76 4.30
144 164 7.840869 AGTAGAAAACTAGAAAACGATCCCTCG 60.841 40.741 0.00 0.00 43.20 4.63
158 178 4.020617 CTCGCTGGCTGGTGGGAA 62.021 66.667 0.00 0.00 0.00 3.97
185 205 1.400494 GCAAGTTGCAACCCTATACCG 59.600 52.381 25.62 6.84 44.26 4.02
189 209 0.176219 TTGCAACCCTATACCGTCGG 59.824 55.000 10.48 10.48 0.00 4.79
220 240 2.885113 CTCGTGGTGATCCGCAGA 59.115 61.111 0.00 0.00 43.79 4.26
239 267 3.983494 AGCAGCGACTGTGCGAGT 61.983 61.111 8.32 0.00 46.06 4.18
406 438 0.458716 CAAACCAAACCAACGGCGTT 60.459 50.000 21.19 21.19 0.00 4.84
407 439 0.179132 AAACCAAACCAACGGCGTTC 60.179 50.000 24.21 0.00 0.00 3.95
408 440 1.313812 AACCAAACCAACGGCGTTCA 61.314 50.000 24.21 0.00 0.00 3.18
409 441 1.104577 ACCAAACCAACGGCGTTCAT 61.105 50.000 24.21 11.07 0.00 2.57
410 442 0.386731 CCAAACCAACGGCGTTCATC 60.387 55.000 24.21 0.00 0.00 2.92
411 443 0.309302 CAAACCAACGGCGTTCATCA 59.691 50.000 24.21 0.00 0.00 3.07
412 444 1.068610 CAAACCAACGGCGTTCATCAT 60.069 47.619 24.21 5.54 0.00 2.45
413 445 1.243902 AACCAACGGCGTTCATCATT 58.756 45.000 24.21 9.73 0.00 2.57
414 446 0.521291 ACCAACGGCGTTCATCATTG 59.479 50.000 24.21 10.61 0.00 2.82
415 447 0.798009 CCAACGGCGTTCATCATTGC 60.798 55.000 24.21 0.00 0.00 3.56
416 448 0.109827 CAACGGCGTTCATCATTGCA 60.110 50.000 24.21 0.00 0.00 4.08
417 449 0.810648 AACGGCGTTCATCATTGCAT 59.189 45.000 21.19 0.00 0.00 3.96
418 450 0.810648 ACGGCGTTCATCATTGCATT 59.189 45.000 6.77 0.00 0.00 3.56
419 451 1.193644 CGGCGTTCATCATTGCATTG 58.806 50.000 0.00 2.08 0.00 2.82
420 452 0.925466 GGCGTTCATCATTGCATTGC 59.075 50.000 0.46 0.46 0.00 3.56
421 453 1.631284 GCGTTCATCATTGCATTGCA 58.369 45.000 7.38 7.38 36.47 4.08
422 454 2.198406 GCGTTCATCATTGCATTGCAT 58.802 42.857 12.95 0.00 38.76 3.96
423 455 2.605818 GCGTTCATCATTGCATTGCATT 59.394 40.909 12.95 6.17 38.76 3.56
424 456 3.543265 GCGTTCATCATTGCATTGCATTG 60.543 43.478 21.75 21.75 38.76 2.82
425 457 3.543265 CGTTCATCATTGCATTGCATTGC 60.543 43.478 23.33 23.33 39.03 3.56
432 464 3.220447 GCATTGCATTGCACCAACT 57.780 47.368 24.71 0.00 42.31 3.16
433 465 0.793861 GCATTGCATTGCACCAACTG 59.206 50.000 24.71 5.54 42.31 3.16
441 473 3.292936 GCACCAACTGCTGCTGCT 61.293 61.111 17.00 0.00 43.33 4.24
442 474 1.968017 GCACCAACTGCTGCTGCTA 60.968 57.895 17.00 2.62 43.33 3.49
443 475 1.919956 GCACCAACTGCTGCTGCTAG 61.920 60.000 17.00 13.80 43.33 3.42
444 476 0.321034 CACCAACTGCTGCTGCTAGA 60.321 55.000 17.00 0.00 40.48 2.43
445 477 0.397941 ACCAACTGCTGCTGCTAGAA 59.602 50.000 17.00 0.00 40.48 2.10
446 478 1.085091 CCAACTGCTGCTGCTAGAAG 58.915 55.000 17.00 8.02 40.48 2.85
450 482 3.393509 GCTGCTGCTAGAAGCGTC 58.606 61.111 18.15 8.17 46.26 5.19
451 483 1.446792 GCTGCTGCTAGAAGCGTCA 60.447 57.895 18.15 0.00 46.26 4.35
452 484 1.691215 GCTGCTGCTAGAAGCGTCAC 61.691 60.000 18.15 3.42 46.26 3.67
453 485 1.409227 CTGCTGCTAGAAGCGTCACG 61.409 60.000 18.15 0.00 46.26 4.35
454 486 2.161486 GCTGCTAGAAGCGTCACGG 61.161 63.158 7.05 0.00 46.26 4.94
455 487 1.213013 CTGCTAGAAGCGTCACGGT 59.787 57.895 0.00 0.00 46.26 4.83
456 488 0.798771 CTGCTAGAAGCGTCACGGTC 60.799 60.000 0.48 0.00 46.26 4.79
457 489 1.211969 GCTAGAAGCGTCACGGTCA 59.788 57.895 0.48 0.00 36.27 4.02
458 490 0.179134 GCTAGAAGCGTCACGGTCAT 60.179 55.000 0.48 0.00 36.27 3.06
459 491 1.828832 CTAGAAGCGTCACGGTCATC 58.171 55.000 0.48 0.00 36.27 2.92
460 492 1.132453 CTAGAAGCGTCACGGTCATCA 59.868 52.381 0.48 0.00 36.27 3.07
461 493 0.317160 AGAAGCGTCACGGTCATCAA 59.683 50.000 0.48 0.00 36.27 2.57
462 494 0.438830 GAAGCGTCACGGTCATCAAC 59.561 55.000 0.48 0.00 36.27 3.18
463 495 1.282248 AAGCGTCACGGTCATCAACG 61.282 55.000 0.48 0.00 36.27 4.10
464 496 2.726691 GCGTCACGGTCATCAACGG 61.727 63.158 0.00 0.00 34.11 4.44
465 497 1.081041 CGTCACGGTCATCAACGGA 60.081 57.895 0.00 0.00 32.76 4.69
466 498 1.071019 CGTCACGGTCATCAACGGAG 61.071 60.000 0.00 0.00 32.76 4.63
467 499 0.736325 GTCACGGTCATCAACGGAGG 60.736 60.000 0.00 0.00 32.76 4.30
468 500 0.896479 TCACGGTCATCAACGGAGGA 60.896 55.000 0.00 0.00 32.76 3.71
469 501 0.458543 CACGGTCATCAACGGAGGAG 60.459 60.000 0.00 0.00 33.96 3.69
470 502 1.141881 CGGTCATCAACGGAGGAGG 59.858 63.158 0.00 0.00 33.96 4.30
471 503 1.320344 CGGTCATCAACGGAGGAGGA 61.320 60.000 0.00 0.00 33.96 3.71
472 504 0.461961 GGTCATCAACGGAGGAGGAG 59.538 60.000 0.00 0.00 33.96 3.69
473 505 1.475403 GTCATCAACGGAGGAGGAGA 58.525 55.000 0.00 0.00 33.96 3.71
474 506 1.135333 GTCATCAACGGAGGAGGAGAC 59.865 57.143 0.00 0.00 33.96 3.36
486 518 3.088259 AGGAGACTCGATCCTCGTG 57.912 57.895 0.00 0.00 44.05 4.35
487 519 0.542333 AGGAGACTCGATCCTCGTGA 59.458 55.000 0.00 0.00 44.05 4.35
488 520 0.941542 GGAGACTCGATCCTCGTGAG 59.058 60.000 5.71 0.00 41.35 3.51
489 521 1.473610 GGAGACTCGATCCTCGTGAGA 60.474 57.143 5.71 0.00 41.35 3.27
490 522 2.489971 GAGACTCGATCCTCGTGAGAT 58.510 52.381 5.71 0.00 41.35 2.75
491 523 3.555377 GGAGACTCGATCCTCGTGAGATA 60.555 52.174 5.71 0.00 41.35 1.98
492 524 4.250464 GAGACTCGATCCTCGTGAGATAT 58.750 47.826 5.71 0.00 41.35 1.63
493 525 5.408880 AGACTCGATCCTCGTGAGATATA 57.591 43.478 5.71 0.00 41.35 0.86
494 526 5.984725 AGACTCGATCCTCGTGAGATATAT 58.015 41.667 5.71 0.00 41.35 0.86
495 527 7.114866 AGACTCGATCCTCGTGAGATATATA 57.885 40.000 5.71 0.00 41.35 0.86
496 528 6.982141 AGACTCGATCCTCGTGAGATATATAC 59.018 42.308 5.71 0.00 41.35 1.47
497 529 6.880484 ACTCGATCCTCGTGAGATATATACT 58.120 40.000 5.71 0.00 41.35 2.12
498 530 8.009622 ACTCGATCCTCGTGAGATATATACTA 57.990 38.462 5.71 0.00 41.35 1.82
499 531 7.922278 ACTCGATCCTCGTGAGATATATACTAC 59.078 40.741 5.71 0.00 41.35 2.73
500 532 7.208777 TCGATCCTCGTGAGATATATACTACC 58.791 42.308 0.00 0.00 41.35 3.18
501 533 6.985059 CGATCCTCGTGAGATATATACTACCA 59.015 42.308 0.00 0.00 40.84 3.25
502 534 7.170151 CGATCCTCGTGAGATATATACTACCAG 59.830 44.444 0.00 0.00 40.84 4.00
503 535 7.492077 TCCTCGTGAGATATATACTACCAGA 57.508 40.000 0.00 0.00 40.84 3.86
504 536 7.557724 TCCTCGTGAGATATATACTACCAGAG 58.442 42.308 0.00 0.00 40.84 3.35
505 537 6.764085 CCTCGTGAGATATATACTACCAGAGG 59.236 46.154 0.00 8.01 40.84 3.69
506 538 6.114089 TCGTGAGATATATACTACCAGAGGC 58.886 44.000 0.00 0.00 33.31 4.70
507 539 6.070136 TCGTGAGATATATACTACCAGAGGCT 60.070 42.308 0.00 0.00 33.31 4.58
508 540 6.037720 CGTGAGATATATACTACCAGAGGCTG 59.962 46.154 0.00 0.00 0.00 4.85
509 541 6.887545 GTGAGATATATACTACCAGAGGCTGT 59.112 42.308 0.00 0.00 0.00 4.40
510 542 7.394923 GTGAGATATATACTACCAGAGGCTGTT 59.605 40.741 0.00 0.00 0.00 3.16
511 543 7.612244 TGAGATATATACTACCAGAGGCTGTTC 59.388 40.741 0.00 0.00 0.00 3.18
512 544 7.704727 AGATATATACTACCAGAGGCTGTTCT 58.295 38.462 0.00 0.00 0.00 3.01
513 545 7.832187 AGATATATACTACCAGAGGCTGTTCTC 59.168 40.741 0.00 0.00 0.00 2.87
514 546 1.562783 ACTACCAGAGGCTGTTCTCC 58.437 55.000 0.00 0.00 34.46 3.71
515 547 0.457851 CTACCAGAGGCTGTTCTCCG 59.542 60.000 0.00 0.00 34.46 4.63
516 548 0.970937 TACCAGAGGCTGTTCTCCGG 60.971 60.000 0.00 0.00 37.36 5.14
542 574 1.384989 ATCAGGGTACGACTCGGCAG 61.385 60.000 2.98 0.00 0.00 4.85
543 575 3.450115 AGGGTACGACTCGGCAGC 61.450 66.667 2.98 0.00 0.00 5.25
544 576 3.450115 GGGTACGACTCGGCAGCT 61.450 66.667 2.98 0.00 0.00 4.24
568 3220 2.951269 CAGTTGATGGCAGCTGGAA 58.049 52.632 17.12 0.00 46.03 3.53
580 3232 3.338249 GCAGCTGGAACTCACAAAGATA 58.662 45.455 17.12 0.00 0.00 1.98
608 3267 1.224069 CGGATGGATGGCGATGTGTC 61.224 60.000 0.00 0.00 0.00 3.67
638 3302 1.008538 CAGTTTGACCGGCAGCAAC 60.009 57.895 0.00 3.42 0.00 4.17
648 3312 2.707849 GGCAGCAACCAGGCAGATG 61.708 63.158 0.00 0.00 35.83 2.90
698 3745 7.658179 AAATAGCACTATCATACAATCACGG 57.342 36.000 0.00 0.00 0.00 4.94
699 3746 3.995199 AGCACTATCATACAATCACGGG 58.005 45.455 0.00 0.00 0.00 5.28
700 3747 3.641436 AGCACTATCATACAATCACGGGA 59.359 43.478 0.00 0.00 0.00 5.14
777 3875 2.440065 TGCATTCATCCACCCGGC 60.440 61.111 0.00 0.00 0.00 6.13
778 3876 2.440065 GCATTCATCCACCCGGCA 60.440 61.111 0.00 0.00 0.00 5.69
779 3877 1.829533 GCATTCATCCACCCGGCAT 60.830 57.895 0.00 0.00 0.00 4.40
780 3878 1.394266 GCATTCATCCACCCGGCATT 61.394 55.000 0.00 0.00 0.00 3.56
781 3879 1.979855 CATTCATCCACCCGGCATTA 58.020 50.000 0.00 0.00 0.00 1.90
782 3880 2.517959 CATTCATCCACCCGGCATTAT 58.482 47.619 0.00 0.00 0.00 1.28
783 3881 2.746279 TTCATCCACCCGGCATTATT 57.254 45.000 0.00 0.00 0.00 1.40
784 3882 1.979855 TCATCCACCCGGCATTATTG 58.020 50.000 0.00 0.00 0.00 1.90
785 3883 1.214175 TCATCCACCCGGCATTATTGT 59.786 47.619 0.00 0.00 0.00 2.71
786 3884 1.337703 CATCCACCCGGCATTATTGTG 59.662 52.381 0.00 0.00 0.00 3.33
787 3885 0.329931 TCCACCCGGCATTATTGTGT 59.670 50.000 0.00 0.00 0.00 3.72
788 3886 0.455410 CCACCCGGCATTATTGTGTG 59.545 55.000 0.00 0.00 0.00 3.82
789 3887 0.455410 CACCCGGCATTATTGTGTGG 59.545 55.000 0.00 0.00 0.00 4.17
790 3888 1.319614 ACCCGGCATTATTGTGTGGC 61.320 55.000 0.00 0.00 37.53 5.01
791 3889 1.318886 CCCGGCATTATTGTGTGGCA 61.319 55.000 0.00 0.00 40.56 4.92
792 3890 0.101040 CCGGCATTATTGTGTGGCAG 59.899 55.000 0.00 0.00 40.56 4.85
793 3891 0.810648 CGGCATTATTGTGTGGCAGT 59.189 50.000 0.00 0.00 40.56 4.40
794 3892 1.202114 CGGCATTATTGTGTGGCAGTT 59.798 47.619 0.00 0.00 40.56 3.16
795 3893 2.609350 GGCATTATTGTGTGGCAGTTG 58.391 47.619 0.00 0.00 40.30 3.16
796 3894 2.609350 GCATTATTGTGTGGCAGTTGG 58.391 47.619 0.00 0.00 0.00 3.77
797 3895 2.029110 GCATTATTGTGTGGCAGTTGGT 60.029 45.455 0.00 0.00 0.00 3.67
798 3896 3.577667 CATTATTGTGTGGCAGTTGGTG 58.422 45.455 0.00 0.00 0.00 4.17
799 3897 2.356665 TATTGTGTGGCAGTTGGTGT 57.643 45.000 0.00 0.00 0.00 4.16
800 3898 1.032014 ATTGTGTGGCAGTTGGTGTC 58.968 50.000 0.00 0.00 0.00 3.67
801 3899 0.322906 TTGTGTGGCAGTTGGTGTCA 60.323 50.000 0.00 0.00 38.94 3.58
804 3902 2.899838 TGGCAGTTGGTGTCACGC 60.900 61.111 0.00 0.00 35.17 5.34
805 3903 4.012895 GGCAGTTGGTGTCACGCG 62.013 66.667 3.53 3.53 0.00 6.01
806 3904 4.012895 GCAGTTGGTGTCACGCGG 62.013 66.667 12.47 0.00 0.00 6.46
807 3905 4.012895 CAGTTGGTGTCACGCGGC 62.013 66.667 12.47 0.03 0.00 6.53
858 3958 4.060667 CCCATCCACCACCCCACC 62.061 72.222 0.00 0.00 0.00 4.61
875 3975 2.055042 CCCCCTCTCCGTCTGTCAG 61.055 68.421 0.00 0.00 0.00 3.51
876 3976 2.055042 CCCCTCTCCGTCTGTCAGG 61.055 68.421 0.00 0.00 0.00 3.86
877 3977 2.716017 CCCTCTCCGTCTGTCAGGC 61.716 68.421 0.00 0.00 0.00 4.85
878 3978 2.716017 CCTCTCCGTCTGTCAGGCC 61.716 68.421 0.00 0.00 0.00 5.19
964 4064 2.415625 CCAAGAAAGCAAGCAGAGCATC 60.416 50.000 0.00 0.00 0.00 3.91
975 4075 3.584403 GAGCATCCCCCATCCCCC 61.584 72.222 0.00 0.00 0.00 5.40
1006 4106 2.045045 CCTTCCTCGCCATGGCAA 60.045 61.111 34.93 18.57 42.06 4.52
1008 4108 2.745884 TTCCTCGCCATGGCAACG 60.746 61.111 34.93 21.42 42.06 4.10
1252 4367 4.643387 ACAACGTGCCCTGCTCCC 62.643 66.667 0.00 0.00 0.00 4.30
1407 4532 1.812922 GATGCTGCTCCGTGTCCTG 60.813 63.158 0.00 0.00 0.00 3.86
1409 4534 4.687215 GCTGCTCCGTGTCCTGCA 62.687 66.667 0.00 0.00 0.00 4.41
1411 4536 4.314440 TGCTCCGTGTCCTGCACC 62.314 66.667 0.00 0.00 44.97 5.01
1548 5063 7.014326 ACTGATGGATGATTGATTGATTTCCTG 59.986 37.037 0.00 0.00 0.00 3.86
1603 5125 2.110006 GGAGGGAATCTGGCGAGC 59.890 66.667 0.00 0.00 0.00 5.03
1631 5153 6.182039 TCTCGATTGTCTGCTTATTTTTGG 57.818 37.500 0.00 0.00 0.00 3.28
1641 5163 6.969473 GTCTGCTTATTTTTGGTGCTTCTATC 59.031 38.462 0.00 0.00 0.00 2.08
1710 5234 6.907206 TTCTTTCTTCCACTTGCAAATTTG 57.093 33.333 14.03 14.03 0.00 2.32
1737 5261 3.130869 GTGCCATCCATGATTGCTTGTTA 59.869 43.478 0.00 0.00 32.82 2.41
1780 5304 0.467804 GCCTCTCTGATTGTCTCCCC 59.532 60.000 0.00 0.00 0.00 4.81
1783 5307 1.484240 CTCTCTGATTGTCTCCCCACC 59.516 57.143 0.00 0.00 0.00 4.61
1842 5366 5.121454 GCCTAGCTGCTGTAATGATTCATAC 59.879 44.000 13.43 0.34 0.00 2.39
1845 5369 6.615264 AGCTGCTGTAATGATTCATACTTG 57.385 37.500 0.00 0.00 0.00 3.16
1846 5370 5.008415 AGCTGCTGTAATGATTCATACTTGC 59.992 40.000 0.00 4.06 0.00 4.01
1852 5439 7.011763 GCTGTAATGATTCATACTTGCTTCTGA 59.988 37.037 0.00 0.00 0.00 3.27
1909 5624 1.372582 TTGCTTGCTATTGCCTCGAG 58.627 50.000 5.13 5.13 38.71 4.04
2077 5802 3.429822 CCATGGGATTGCACAGCTTTAAG 60.430 47.826 2.85 0.00 0.00 1.85
2091 5816 5.517054 ACAGCTTTAAGATTCGATCTCGTTC 59.483 40.000 0.00 0.00 39.08 3.95
2098 5823 3.315521 CGATCTCGTTCTGCGGCG 61.316 66.667 0.51 0.51 41.72 6.46
2117 6216 2.051518 GGTGGCCATCGGATTGCAA 61.052 57.895 9.72 0.00 0.00 4.08
2119 6218 0.458370 GTGGCCATCGGATTGCAAAC 60.458 55.000 9.72 0.00 0.00 2.93
2149 6248 4.221703 ACAACATGTCTTTCGATCTCCTCT 59.778 41.667 0.00 0.00 0.00 3.69
2153 6252 3.421844 TGTCTTTCGATCTCCTCTGTCA 58.578 45.455 0.00 0.00 0.00 3.58
2199 6298 6.607970 TCAAATCCTCCTCATATTCAGCATT 58.392 36.000 0.00 0.00 0.00 3.56
2334 6495 2.919602 TGGAGGCCTTTCTGTTTAGGAT 59.080 45.455 6.77 0.00 33.13 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.676466 TGAATTGCGATCGGCCTTGT 60.676 50.000 18.30 0.00 42.61 3.16
2 3 0.028505 CTGAATTGCGATCGGCCTTG 59.971 55.000 18.30 0.00 42.61 3.61
3 4 0.107703 TCTGAATTGCGATCGGCCTT 60.108 50.000 18.30 5.82 42.61 4.35
5 6 0.732571 TTTCTGAATTGCGATCGGCC 59.267 50.000 18.30 0.98 42.61 6.13
6 7 1.398390 ACTTTCTGAATTGCGATCGGC 59.602 47.619 18.30 9.85 43.96 5.54
7 8 2.285256 CGACTTTCTGAATTGCGATCGG 60.285 50.000 18.30 0.00 0.00 4.18
8 9 2.843542 GCGACTTTCTGAATTGCGATCG 60.844 50.000 11.69 11.69 0.00 3.69
9 10 2.094258 TGCGACTTTCTGAATTGCGATC 59.906 45.455 9.45 0.00 0.00 3.69
10 11 2.076100 TGCGACTTTCTGAATTGCGAT 58.924 42.857 9.45 0.00 0.00 4.58
11 12 1.194547 GTGCGACTTTCTGAATTGCGA 59.805 47.619 9.45 0.00 0.00 5.10
12 13 1.595609 GTGCGACTTTCTGAATTGCG 58.404 50.000 0.00 0.00 0.00 4.85
13 14 1.401539 GGGTGCGACTTTCTGAATTGC 60.402 52.381 0.00 0.00 0.00 3.56
14 15 1.879380 TGGGTGCGACTTTCTGAATTG 59.121 47.619 0.00 0.00 0.00 2.32
15 16 1.880027 GTGGGTGCGACTTTCTGAATT 59.120 47.619 0.00 0.00 0.00 2.17
16 17 1.072331 AGTGGGTGCGACTTTCTGAAT 59.928 47.619 0.00 0.00 0.00 2.57
17 18 0.468226 AGTGGGTGCGACTTTCTGAA 59.532 50.000 0.00 0.00 0.00 3.02
51 52 1.298157 CCGCTTGCGTCTGATTTGGA 61.298 55.000 13.97 0.00 0.00 3.53
124 144 3.056035 AGCGAGGGATCGTTTTCTAGTTT 60.056 43.478 0.00 0.00 35.26 2.66
125 145 2.496470 AGCGAGGGATCGTTTTCTAGTT 59.504 45.455 0.00 0.00 35.26 2.24
126 146 2.100989 AGCGAGGGATCGTTTTCTAGT 58.899 47.619 0.00 0.00 35.26 2.57
127 147 2.464865 CAGCGAGGGATCGTTTTCTAG 58.535 52.381 0.00 0.00 35.26 2.43
128 148 1.136305 CCAGCGAGGGATCGTTTTCTA 59.864 52.381 0.00 0.00 35.26 2.10
129 149 0.108138 CCAGCGAGGGATCGTTTTCT 60.108 55.000 0.00 0.00 35.26 2.52
130 150 1.706287 GCCAGCGAGGGATCGTTTTC 61.706 60.000 0.00 0.00 38.09 2.29
131 151 1.745489 GCCAGCGAGGGATCGTTTT 60.745 57.895 0.00 0.00 38.09 2.43
132 152 2.125106 GCCAGCGAGGGATCGTTT 60.125 61.111 0.00 0.00 38.09 3.60
133 153 3.077556 AGCCAGCGAGGGATCGTT 61.078 61.111 0.00 0.00 38.09 3.85
134 154 3.842923 CAGCCAGCGAGGGATCGT 61.843 66.667 0.00 0.00 38.09 3.73
135 155 4.598894 CCAGCCAGCGAGGGATCG 62.599 72.222 0.34 0.00 38.09 3.69
136 156 3.474570 ACCAGCCAGCGAGGGATC 61.475 66.667 8.65 0.00 38.09 3.36
137 157 3.790437 CACCAGCCAGCGAGGGAT 61.790 66.667 8.65 0.00 38.09 3.85
141 161 3.965539 CTTCCCACCAGCCAGCGAG 62.966 68.421 0.00 0.00 0.00 5.03
142 162 4.020617 CTTCCCACCAGCCAGCGA 62.021 66.667 0.00 0.00 0.00 4.93
203 223 1.517257 GTCTGCGGATCACCACGAG 60.517 63.158 0.00 0.00 35.59 4.18
207 227 2.265739 GCTGTCTGCGGATCACCA 59.734 61.111 0.00 0.00 35.59 4.17
239 267 1.962822 CTTGCTTCCAGCGACTGCA 60.963 57.895 0.00 0.00 46.26 4.41
330 359 2.738480 CCTTCACCAACGGACGGA 59.262 61.111 0.00 0.00 0.00 4.69
331 360 3.047877 GCCTTCACCAACGGACGG 61.048 66.667 0.00 0.00 0.00 4.79
332 361 2.280524 TGCCTTCACCAACGGACG 60.281 61.111 0.00 0.00 0.00 4.79
342 371 2.672651 CCACCGCATGTGCCTTCA 60.673 61.111 0.00 0.00 44.01 3.02
414 446 0.793861 CAGTTGGTGCAATGCAATGC 59.206 50.000 19.99 19.99 46.58 3.56
426 458 0.397941 TTCTAGCAGCAGCAGTTGGT 59.602 50.000 3.17 2.86 45.49 3.67
427 459 1.085091 CTTCTAGCAGCAGCAGTTGG 58.915 55.000 3.17 0.00 45.49 3.77
428 460 0.447011 GCTTCTAGCAGCAGCAGTTG 59.553 55.000 9.67 0.00 45.49 3.16
429 461 1.018226 CGCTTCTAGCAGCAGCAGTT 61.018 55.000 14.82 0.00 42.58 3.16
430 462 1.447489 CGCTTCTAGCAGCAGCAGT 60.447 57.895 14.82 0.00 42.58 4.40
431 463 1.419874 GACGCTTCTAGCAGCAGCAG 61.420 60.000 14.82 0.58 42.58 4.24
432 464 1.446792 GACGCTTCTAGCAGCAGCA 60.447 57.895 14.82 0.00 42.58 4.41
433 465 1.446792 TGACGCTTCTAGCAGCAGC 60.447 57.895 14.82 5.93 42.58 5.25
434 466 1.409227 CGTGACGCTTCTAGCAGCAG 61.409 60.000 14.82 9.45 42.58 4.24
435 467 1.444383 CGTGACGCTTCTAGCAGCA 60.444 57.895 14.82 0.00 42.58 4.41
436 468 2.161486 CCGTGACGCTTCTAGCAGC 61.161 63.158 4.06 4.06 42.58 5.25
437 469 0.798771 GACCGTGACGCTTCTAGCAG 60.799 60.000 0.00 0.00 42.58 4.24
438 470 1.211969 GACCGTGACGCTTCTAGCA 59.788 57.895 0.00 0.00 42.58 3.49
439 471 0.179134 ATGACCGTGACGCTTCTAGC 60.179 55.000 0.00 0.00 38.02 3.42
440 472 1.132453 TGATGACCGTGACGCTTCTAG 59.868 52.381 0.00 0.00 0.00 2.43
441 473 1.170442 TGATGACCGTGACGCTTCTA 58.830 50.000 0.00 0.00 0.00 2.10
442 474 0.317160 TTGATGACCGTGACGCTTCT 59.683 50.000 0.00 0.00 0.00 2.85
443 475 0.438830 GTTGATGACCGTGACGCTTC 59.561 55.000 0.00 0.00 0.00 3.86
444 476 1.282248 CGTTGATGACCGTGACGCTT 61.282 55.000 0.00 0.00 0.00 4.68
445 477 1.733041 CGTTGATGACCGTGACGCT 60.733 57.895 0.00 0.00 0.00 5.07
446 478 2.726691 CCGTTGATGACCGTGACGC 61.727 63.158 0.00 0.00 32.78 5.19
447 479 1.071019 CTCCGTTGATGACCGTGACG 61.071 60.000 0.00 0.00 0.00 4.35
448 480 0.736325 CCTCCGTTGATGACCGTGAC 60.736 60.000 0.00 0.00 0.00 3.67
449 481 0.896479 TCCTCCGTTGATGACCGTGA 60.896 55.000 0.00 0.00 0.00 4.35
450 482 0.458543 CTCCTCCGTTGATGACCGTG 60.459 60.000 0.00 0.00 0.00 4.94
451 483 1.605058 CCTCCTCCGTTGATGACCGT 61.605 60.000 0.00 0.00 0.00 4.83
452 484 1.141881 CCTCCTCCGTTGATGACCG 59.858 63.158 0.00 0.00 0.00 4.79
453 485 0.461961 CTCCTCCTCCGTTGATGACC 59.538 60.000 0.00 0.00 0.00 4.02
454 486 1.135333 GTCTCCTCCTCCGTTGATGAC 59.865 57.143 0.00 0.00 0.00 3.06
455 487 1.006043 AGTCTCCTCCTCCGTTGATGA 59.994 52.381 0.00 0.00 0.00 2.92
456 488 1.407258 GAGTCTCCTCCTCCGTTGATG 59.593 57.143 0.00 0.00 0.00 3.07
457 489 1.770294 GAGTCTCCTCCTCCGTTGAT 58.230 55.000 0.00 0.00 0.00 2.57
458 490 0.677098 CGAGTCTCCTCCTCCGTTGA 60.677 60.000 0.00 0.00 33.93 3.18
459 491 0.677098 TCGAGTCTCCTCCTCCGTTG 60.677 60.000 0.00 0.00 33.93 4.10
460 492 0.256464 ATCGAGTCTCCTCCTCCGTT 59.744 55.000 0.00 0.00 33.93 4.44
461 493 0.179040 GATCGAGTCTCCTCCTCCGT 60.179 60.000 0.00 0.00 33.93 4.69
462 494 0.887387 GGATCGAGTCTCCTCCTCCG 60.887 65.000 8.32 0.00 33.93 4.63
463 495 0.476771 AGGATCGAGTCTCCTCCTCC 59.523 60.000 11.31 5.14 38.87 4.30
477 509 8.205512 TCTGGTAGTATATATCTCACGAGGATC 58.794 40.741 0.00 0.00 0.00 3.36
478 510 8.091952 TCTGGTAGTATATATCTCACGAGGAT 57.908 38.462 0.00 0.00 0.00 3.24
479 511 7.364851 CCTCTGGTAGTATATATCTCACGAGGA 60.365 44.444 0.00 0.00 35.09 3.71
480 512 6.764085 CCTCTGGTAGTATATATCTCACGAGG 59.236 46.154 0.00 0.00 0.00 4.63
481 513 6.259167 GCCTCTGGTAGTATATATCTCACGAG 59.741 46.154 0.00 0.00 0.00 4.18
482 514 6.070136 AGCCTCTGGTAGTATATATCTCACGA 60.070 42.308 0.00 0.00 0.00 4.35
483 515 6.037720 CAGCCTCTGGTAGTATATATCTCACG 59.962 46.154 0.00 0.00 0.00 4.35
484 516 6.887545 ACAGCCTCTGGTAGTATATATCTCAC 59.112 42.308 0.00 0.00 35.51 3.51
485 517 7.033782 ACAGCCTCTGGTAGTATATATCTCA 57.966 40.000 0.00 0.00 35.51 3.27
486 518 7.832187 AGAACAGCCTCTGGTAGTATATATCTC 59.168 40.741 0.00 0.00 35.51 2.75
487 519 7.704727 AGAACAGCCTCTGGTAGTATATATCT 58.295 38.462 0.00 0.00 35.51 1.98
488 520 7.067737 GGAGAACAGCCTCTGGTAGTATATATC 59.932 44.444 0.00 0.00 35.51 1.63
489 521 6.893005 GGAGAACAGCCTCTGGTAGTATATAT 59.107 42.308 0.00 0.00 35.51 0.86
490 522 6.246919 GGAGAACAGCCTCTGGTAGTATATA 58.753 44.000 0.00 0.00 35.51 0.86
491 523 5.081032 GGAGAACAGCCTCTGGTAGTATAT 58.919 45.833 0.00 0.00 35.51 0.86
492 524 4.471548 GGAGAACAGCCTCTGGTAGTATA 58.528 47.826 0.00 0.00 35.51 1.47
493 525 3.301274 GGAGAACAGCCTCTGGTAGTAT 58.699 50.000 0.00 0.00 35.51 2.12
494 526 2.736347 GGAGAACAGCCTCTGGTAGTA 58.264 52.381 0.00 0.00 35.51 1.82
495 527 1.562783 GGAGAACAGCCTCTGGTAGT 58.437 55.000 0.00 0.00 35.51 2.73
496 528 0.457851 CGGAGAACAGCCTCTGGTAG 59.542 60.000 0.00 0.00 36.23 3.18
497 529 2.579878 CGGAGAACAGCCTCTGGTA 58.420 57.895 0.00 0.00 36.23 3.25
498 530 3.382111 CGGAGAACAGCCTCTGGT 58.618 61.111 0.00 0.00 36.23 4.00
500 532 1.831652 AACCCGGAGAACAGCCTCTG 61.832 60.000 0.73 0.00 38.86 3.35
501 533 1.536662 AACCCGGAGAACAGCCTCT 60.537 57.895 0.73 0.00 33.79 3.69
502 534 1.079057 GAACCCGGAGAACAGCCTC 60.079 63.158 0.73 0.00 0.00 4.70
503 535 1.841556 TGAACCCGGAGAACAGCCT 60.842 57.895 0.73 0.00 0.00 4.58
504 536 1.671379 GTGAACCCGGAGAACAGCC 60.671 63.158 0.73 0.00 0.00 4.85
505 537 0.321653 ATGTGAACCCGGAGAACAGC 60.322 55.000 0.73 0.00 0.00 4.40
506 538 1.001974 TGATGTGAACCCGGAGAACAG 59.998 52.381 0.73 0.00 0.00 3.16
507 539 1.001974 CTGATGTGAACCCGGAGAACA 59.998 52.381 0.73 1.84 0.00 3.18
508 540 1.676014 CCTGATGTGAACCCGGAGAAC 60.676 57.143 0.73 0.00 0.00 3.01
509 541 0.613260 CCTGATGTGAACCCGGAGAA 59.387 55.000 0.73 0.00 0.00 2.87
510 542 1.264749 CCCTGATGTGAACCCGGAGA 61.265 60.000 0.73 0.00 0.00 3.71
511 543 1.221840 CCCTGATGTGAACCCGGAG 59.778 63.158 0.73 0.00 0.00 4.63
512 544 0.252330 TACCCTGATGTGAACCCGGA 60.252 55.000 0.73 0.00 0.00 5.14
513 545 0.107848 GTACCCTGATGTGAACCCGG 60.108 60.000 0.00 0.00 0.00 5.73
514 546 0.459585 CGTACCCTGATGTGAACCCG 60.460 60.000 0.00 0.00 0.00 5.28
515 547 0.899720 TCGTACCCTGATGTGAACCC 59.100 55.000 0.00 0.00 0.00 4.11
516 548 1.549170 AGTCGTACCCTGATGTGAACC 59.451 52.381 0.00 0.00 0.00 3.62
542 574 2.825836 CCATCAACTGCCCCGAGC 60.826 66.667 0.00 0.00 44.14 5.03
543 575 2.825836 GCCATCAACTGCCCCGAG 60.826 66.667 0.00 0.00 0.00 4.63
544 576 3.626996 CTGCCATCAACTGCCCCGA 62.627 63.158 0.00 0.00 0.00 5.14
548 3200 2.707849 CCAGCTGCCATCAACTGCC 61.708 63.158 8.66 0.00 35.60 4.85
568 3220 3.467803 GCCGGCTATTATCTTTGTGAGT 58.532 45.455 22.15 0.00 0.00 3.41
580 3232 1.003355 CATCCATCCGCCGGCTATT 60.003 57.895 26.68 5.34 0.00 1.73
608 3267 2.030562 AAACTGACCGGTCGCCAG 59.969 61.111 28.70 22.84 0.00 4.85
623 3287 2.124109 TGGTTGCTGCCGGTCAAA 60.124 55.556 1.90 0.00 0.00 2.69
624 3288 2.594303 CTGGTTGCTGCCGGTCAA 60.594 61.111 1.90 2.30 0.00 3.18
638 3302 4.209538 TGATGGAAAATACATCTGCCTGG 58.790 43.478 4.33 0.00 43.88 4.45
648 3312 3.001330 CCGCTCTCGTTGATGGAAAATAC 59.999 47.826 0.00 0.00 0.00 1.89
696 3743 7.819900 AGAGAATCGGAATATATTTTCTTCCCG 59.180 37.037 12.50 12.50 42.67 5.14
698 3745 9.495572 ACAGAGAATCGGAATATATTTTCTTCC 57.504 33.333 10.17 2.73 42.67 3.46
777 3875 3.005684 ACACCAACTGCCACACAATAATG 59.994 43.478 0.00 0.00 0.00 1.90
778 3876 3.230134 ACACCAACTGCCACACAATAAT 58.770 40.909 0.00 0.00 0.00 1.28
779 3877 2.621055 GACACCAACTGCCACACAATAA 59.379 45.455 0.00 0.00 0.00 1.40
780 3878 2.226330 GACACCAACTGCCACACAATA 58.774 47.619 0.00 0.00 0.00 1.90
781 3879 1.032014 GACACCAACTGCCACACAAT 58.968 50.000 0.00 0.00 0.00 2.71
782 3880 0.322906 TGACACCAACTGCCACACAA 60.323 50.000 0.00 0.00 0.00 3.33
783 3881 1.029408 GTGACACCAACTGCCACACA 61.029 55.000 0.00 0.00 0.00 3.72
784 3882 1.727467 GTGACACCAACTGCCACAC 59.273 57.895 0.00 0.00 0.00 3.82
785 3883 1.817520 CGTGACACCAACTGCCACA 60.818 57.895 0.00 0.00 0.00 4.17
786 3884 3.022287 CGTGACACCAACTGCCAC 58.978 61.111 0.00 0.00 0.00 5.01
787 3885 2.899838 GCGTGACACCAACTGCCA 60.900 61.111 0.00 0.00 0.00 4.92
788 3886 4.012895 CGCGTGACACCAACTGCC 62.013 66.667 0.00 0.00 0.00 4.85
789 3887 4.012895 CCGCGTGACACCAACTGC 62.013 66.667 4.92 0.00 0.00 4.40
790 3888 4.012895 GCCGCGTGACACCAACTG 62.013 66.667 4.92 0.00 0.00 3.16
858 3958 2.055042 CCTGACAGACGGAGAGGGG 61.055 68.421 3.32 0.00 0.00 4.79
875 3975 4.149598 CAAATGGGTTTATACTAGGGGCC 58.850 47.826 0.00 0.00 0.00 5.80
876 3976 3.572682 GCAAATGGGTTTATACTAGGGGC 59.427 47.826 0.00 0.00 0.00 5.80
877 3977 4.149598 GGCAAATGGGTTTATACTAGGGG 58.850 47.826 0.00 0.00 0.00 4.79
878 3978 3.818773 CGGCAAATGGGTTTATACTAGGG 59.181 47.826 0.00 0.00 0.00 3.53
975 4075 0.608308 GGAAGGGGAAAGTGGAACGG 60.608 60.000 0.00 0.00 45.86 4.44
976 4076 0.400594 AGGAAGGGGAAAGTGGAACG 59.599 55.000 0.00 0.00 45.86 3.95
977 4077 1.610886 CGAGGAAGGGGAAAGTGGAAC 60.611 57.143 0.00 0.00 0.00 3.62
1409 4534 3.005539 ATCTGCAGTGGAGCGGGT 61.006 61.111 14.67 0.00 41.26 5.28
1411 4536 3.200593 GCATCTGCAGTGGAGCGG 61.201 66.667 14.67 2.47 42.28 5.52
1548 5063 1.302511 ATCACAGGTTCACGGCCAC 60.303 57.895 2.24 0.00 0.00 5.01
1603 5125 1.880340 GCAGACAATCGAGAGGGCG 60.880 63.158 0.00 0.00 0.00 6.13
1631 5153 5.519566 CAGACATTCAGACAGATAGAAGCAC 59.480 44.000 0.00 0.00 0.00 4.40
1641 5163 7.215789 AGCCTAATTATCAGACATTCAGACAG 58.784 38.462 0.00 0.00 0.00 3.51
1683 5207 2.226437 TGCAAGTGGAAGAAAGAATCGC 59.774 45.455 0.00 0.00 0.00 4.58
1710 5234 0.466189 AATCATGGATGGCACGACCC 60.466 55.000 0.00 0.00 37.83 4.46
1737 5261 0.251787 GCTGGATTCCCACCCAAGTT 60.252 55.000 0.00 0.00 37.58 2.66
1842 5366 7.278629 CACAAATCGAAAATTTCAGAAGCAAG 58.721 34.615 6.53 0.00 0.00 4.01
1845 5369 5.388786 GGCACAAATCGAAAATTTCAGAAGC 60.389 40.000 6.53 0.74 0.00 3.86
1846 5370 5.691305 TGGCACAAATCGAAAATTTCAGAAG 59.309 36.000 6.53 2.83 31.92 2.85
1909 5624 2.096819 CGAGTAGTTGACCTCTCTCTGC 59.903 54.545 0.00 0.00 0.00 4.26
2098 5823 3.219198 GCAATCCGATGGCCACCC 61.219 66.667 8.16 1.27 0.00 4.61
2107 6206 2.083774 GTCATGAGGTTTGCAATCCGA 58.916 47.619 18.61 11.24 0.00 4.55
2108 6207 1.811965 TGTCATGAGGTTTGCAATCCG 59.188 47.619 18.61 6.82 0.00 4.18
2149 6248 1.070786 GAGGGGCACGTTCTTGACA 59.929 57.895 0.00 0.00 0.00 3.58
2153 6252 1.600916 GCAAGAGGGGCACGTTCTT 60.601 57.895 0.00 0.00 0.00 2.52
2227 6387 3.713826 ATTTCCCTTCTTAACCGAGCA 57.286 42.857 0.00 0.00 0.00 4.26
2253 6413 2.398554 ACACGTGAATCGCATGGCC 61.399 57.895 25.01 0.00 44.19 5.36
2255 6415 0.516877 AACACACGTGAATCGCATGG 59.483 50.000 25.01 2.35 44.19 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.