Multiple sequence alignment - TraesCS1B01G369900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G369900 chr1B 100.000 2315 0 0 1 2315 599764778 599767092 0.000000e+00 4276.0
1 TraesCS1B01G369900 chr1B 97.797 1816 39 1 1 1815 599635608 599637423 0.000000e+00 3131.0
2 TraesCS1B01G369900 chr1B 97.577 1816 43 1 1 1815 599706816 599708631 0.000000e+00 3109.0
3 TraesCS1B01G369900 chr1B 96.703 1820 45 4 1 1815 599836323 599838132 0.000000e+00 3014.0
4 TraesCS1B01G369900 chr1B 96.864 1371 36 4 450 1815 599925578 599926946 0.000000e+00 2287.0
5 TraesCS1B01G369900 chr1B 96.791 1371 39 2 450 1815 599982766 599984136 0.000000e+00 2283.0
6 TraesCS1B01G369900 chr1B 96.791 1153 34 3 664 1815 599577667 599578817 0.000000e+00 1921.0
7 TraesCS1B01G369900 chr1B 98.413 441 7 0 1 441 599982177 599982617 0.000000e+00 776.0
8 TraesCS1B01G369900 chr1B 97.585 414 9 1 1 414 599924862 599925274 0.000000e+00 708.0
9 TraesCS1B01G369900 chr1B 95.739 399 13 4 1 398 599577278 599577673 6.970000e-180 640.0
10 TraesCS1B01G369900 chr1B 93.421 304 11 4 2012 2314 599838179 599838474 2.110000e-120 442.0
11 TraesCS1B01G369900 chr1B 93.377 302 12 4 2014 2314 599578869 599579163 7.590000e-120 440.0
12 TraesCS1B01G369900 chr1B 93.046 302 14 3 2014 2314 599708682 599708977 3.530000e-118 435.0
13 TraesCS1B01G369900 chr1B 93.046 302 13 4 2014 2314 599926997 599927291 3.530000e-118 435.0
14 TraesCS1B01G369900 chr1B 93.046 302 13 4 2014 2314 599984188 599984482 3.530000e-118 435.0
15 TraesCS1B01G369900 chr1B 92.384 302 16 3 2014 2314 599637475 599637770 7.650000e-115 424.0
16 TraesCS1B01G369900 chr1B 96.226 53 0 1 1844 1896 599578816 599578866 4.100000e-13 86.1
17 TraesCS1B01G369900 chr1B 96.226 53 0 1 1844 1896 599637422 599637472 4.100000e-13 86.1
18 TraesCS1B01G369900 chr1B 96.226 53 0 1 1844 1896 599708630 599708680 4.100000e-13 86.1
19 TraesCS1B01G369900 chr1D 92.218 1889 103 20 39 1897 441739567 441741441 0.000000e+00 2634.0
20 TraesCS1B01G369900 chr1D 89.076 952 80 12 962 1896 441644236 441645180 0.000000e+00 1160.0
21 TraesCS1B01G369900 chr1D 92.055 793 22 8 1 784 441631902 441632662 0.000000e+00 1077.0
22 TraesCS1B01G369900 chr1D 89.869 306 26 5 2012 2314 441741440 441741743 2.790000e-104 388.0
23 TraesCS1B01G369900 chr1D 90.357 280 26 1 2 281 441577853 441578131 1.310000e-97 366.0
24 TraesCS1B01G369900 chr1D 94.366 142 7 1 829 969 441632663 441632804 1.390000e-52 217.0
25 TraesCS1B01G369900 chr1A 86.623 912 92 16 996 1894 536629864 536628970 0.000000e+00 981.0
26 TraesCS1B01G369900 chr1A 91.597 119 10 0 1896 2014 6470348 6470466 5.120000e-37 165.0
27 TraesCS1B01G369900 chr5B 92.800 125 9 0 1896 2020 28370052 28369928 5.080000e-42 182.0
28 TraesCS1B01G369900 chr2B 91.200 125 11 0 1889 2013 711198330 711198454 1.100000e-38 171.0
29 TraesCS1B01G369900 chr2B 88.571 140 10 6 1893 2028 643184615 643184752 5.120000e-37 165.0
30 TraesCS1B01G369900 chr2B 79.096 177 30 7 219 393 793021527 793021698 5.230000e-22 115.0
31 TraesCS1B01G369900 chr7A 91.736 121 8 2 1895 2013 222941734 222941854 1.420000e-37 167.0
32 TraesCS1B01G369900 chr2A 91.667 120 10 0 1896 2015 477056142 477056023 1.420000e-37 167.0
33 TraesCS1B01G369900 chr6B 91.525 118 10 0 1896 2013 617675165 617675282 1.840000e-36 163.0
34 TraesCS1B01G369900 chr3B 91.453 117 10 0 1896 2012 622399406 622399290 6.620000e-36 161.0
35 TraesCS1B01G369900 chr4D 90.244 123 11 1 1893 2015 338012720 338012841 2.380000e-35 159.0
36 TraesCS1B01G369900 chr2D 85.484 62 3 6 2151 2209 60586833 60586775 2.480000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G369900 chr1B 599764778 599767092 2314 False 4276.000000 4276 100.000000 1 2315 1 chr1B.!!$F1 2314
1 TraesCS1B01G369900 chr1B 599836323 599838474 2151 False 1728.000000 3014 95.062000 1 2314 2 chr1B.!!$F5 2313
2 TraesCS1B01G369900 chr1B 599635608 599637770 2162 False 1213.700000 3131 95.469000 1 2314 3 chr1B.!!$F3 2313
3 TraesCS1B01G369900 chr1B 599706816 599708977 2161 False 1210.033333 3109 95.616333 1 2314 3 chr1B.!!$F4 2313
4 TraesCS1B01G369900 chr1B 599982177 599984482 2305 False 1164.666667 2283 96.083333 1 2314 3 chr1B.!!$F7 2313
5 TraesCS1B01G369900 chr1B 599924862 599927291 2429 False 1143.333333 2287 95.831667 1 2314 3 chr1B.!!$F6 2313
6 TraesCS1B01G369900 chr1B 599577278 599579163 1885 False 771.775000 1921 95.533250 1 2314 4 chr1B.!!$F2 2313
7 TraesCS1B01G369900 chr1D 441739567 441741743 2176 False 1511.000000 2634 91.043500 39 2314 2 chr1D.!!$F4 2275
8 TraesCS1B01G369900 chr1D 441644236 441645180 944 False 1160.000000 1160 89.076000 962 1896 1 chr1D.!!$F2 934
9 TraesCS1B01G369900 chr1D 441631902 441632804 902 False 647.000000 1077 93.210500 1 969 2 chr1D.!!$F3 968
10 TraesCS1B01G369900 chr1A 536628970 536629864 894 True 981.000000 981 86.623000 996 1894 1 chr1A.!!$R1 898


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 1462 0.933097 CGCATTGATCGGAGTTGAGG 59.067 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2570 0.036875 CCCTCCGTCTGGAAAAGCTT 59.963 55.0 0.0 0.0 45.87 3.74 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 4.693283 TGTGAGCTATTTTGATCGTAGGG 58.307 43.478 0.00 0.00 0.00 3.53
564 842 5.061721 TGTCTGATGTCTACTATAGCCCA 57.938 43.478 0.00 0.00 0.00 5.36
906 1462 0.933097 CGCATTGATCGGAGTTGAGG 59.067 55.000 0.00 0.00 0.00 3.86
1419 1982 2.567985 ACCTTATTCGCCCGGTTATTG 58.432 47.619 0.00 0.00 0.00 1.90
1514 2092 2.009681 TGTGCTAGACAGACCCTTGA 57.990 50.000 0.00 0.00 0.00 3.02
1561 2139 3.667360 GGCCGTGAAGTAGTTTCCTTTA 58.333 45.455 0.00 0.00 34.77 1.85
1643 2224 4.096003 CGCCGTCCCCAACCTCAT 62.096 66.667 0.00 0.00 0.00 2.90
1694 2275 2.356741 GCAAAGCCCCTTATAGTGGTCA 60.357 50.000 0.00 0.00 0.00 4.02
1730 2311 1.686052 CTCCTTCGCTCTTGGCTATCT 59.314 52.381 0.00 0.00 39.13 1.98
1733 2314 1.137872 CTTCGCTCTTGGCTATCTGGT 59.862 52.381 0.00 0.00 39.13 4.00
1794 2375 2.253758 GCTTGGCAGCGTGAGTTCA 61.254 57.895 0.00 0.00 35.91 3.18
1815 2396 4.640855 CGCGGTGTGGACGACTGT 62.641 66.667 0.00 0.00 0.00 3.55
1840 2421 4.570663 GTGGTAGCGGCGCGAGAT 62.571 66.667 27.59 11.82 0.00 2.75
1861 2442 2.178876 TTGGCGTGGATCGGTCACAT 62.179 55.000 0.00 0.00 40.26 3.21
1896 2477 4.887071 GTGTCATTTGTTCCCTGGCATATA 59.113 41.667 0.00 0.00 0.00 0.86
1897 2478 4.887071 TGTCATTTGTTCCCTGGCATATAC 59.113 41.667 0.00 0.00 0.00 1.47
1898 2479 5.133221 GTCATTTGTTCCCTGGCATATACT 58.867 41.667 0.00 0.00 0.00 2.12
1899 2480 5.239525 GTCATTTGTTCCCTGGCATATACTC 59.760 44.000 0.00 0.00 0.00 2.59
1900 2481 3.857157 TTGTTCCCTGGCATATACTCC 57.143 47.619 0.00 0.00 0.00 3.85
1901 2482 2.054799 TGTTCCCTGGCATATACTCCC 58.945 52.381 0.00 0.00 0.00 4.30
1902 2483 2.339769 GTTCCCTGGCATATACTCCCT 58.660 52.381 0.00 0.00 0.00 4.20
1903 2484 2.303311 GTTCCCTGGCATATACTCCCTC 59.697 54.545 0.00 0.00 0.00 4.30
1904 2485 1.203313 TCCCTGGCATATACTCCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
1905 2486 0.898320 CCTGGCATATACTCCCTCCG 59.102 60.000 0.00 0.00 0.00 4.63
1906 2487 1.633774 CTGGCATATACTCCCTCCGT 58.366 55.000 0.00 0.00 0.00 4.69
1907 2488 1.546476 CTGGCATATACTCCCTCCGTC 59.454 57.143 0.00 0.00 0.00 4.79
1908 2489 0.896226 GGCATATACTCCCTCCGTCC 59.104 60.000 0.00 0.00 0.00 4.79
1909 2490 0.526662 GCATATACTCCCTCCGTCCG 59.473 60.000 0.00 0.00 0.00 4.79
1910 2491 1.885359 GCATATACTCCCTCCGTCCGA 60.885 57.143 0.00 0.00 0.00 4.55
1911 2492 2.511659 CATATACTCCCTCCGTCCGAA 58.488 52.381 0.00 0.00 0.00 4.30
1912 2493 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
1913 2494 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
1914 2495 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
1942 2523 7.859325 TGTCCTTTAAATGAATGTACCTAGC 57.141 36.000 0.00 0.00 0.00 3.42
1943 2524 7.398829 TGTCCTTTAAATGAATGTACCTAGCA 58.601 34.615 0.00 0.00 0.00 3.49
1944 2525 7.335924 TGTCCTTTAAATGAATGTACCTAGCAC 59.664 37.037 0.00 0.00 0.00 4.40
1945 2526 6.826741 TCCTTTAAATGAATGTACCTAGCACC 59.173 38.462 0.00 0.00 0.00 5.01
1946 2527 6.601613 CCTTTAAATGAATGTACCTAGCACCA 59.398 38.462 0.00 0.00 0.00 4.17
1947 2528 7.122055 CCTTTAAATGAATGTACCTAGCACCAA 59.878 37.037 0.00 0.00 0.00 3.67
1948 2529 7.624360 TTAAATGAATGTACCTAGCACCAAG 57.376 36.000 0.00 0.00 0.00 3.61
1949 2530 4.844349 ATGAATGTACCTAGCACCAAGT 57.156 40.909 0.00 0.00 0.00 3.16
1950 2531 4.634012 TGAATGTACCTAGCACCAAGTT 57.366 40.909 0.00 0.00 0.00 2.66
1951 2532 5.748670 TGAATGTACCTAGCACCAAGTTA 57.251 39.130 0.00 0.00 0.00 2.24
1952 2533 5.730550 TGAATGTACCTAGCACCAAGTTAG 58.269 41.667 0.00 0.00 0.00 2.34
1953 2534 5.247564 TGAATGTACCTAGCACCAAGTTAGT 59.752 40.000 0.00 0.00 29.78 2.24
1954 2535 4.530710 TGTACCTAGCACCAAGTTAGTG 57.469 45.455 0.00 0.00 38.30 2.74
1967 2548 7.896811 CACCAAGTTAGTGCTAGATATATCCA 58.103 38.462 9.18 0.00 0.00 3.41
1968 2549 8.535335 CACCAAGTTAGTGCTAGATATATCCAT 58.465 37.037 9.18 0.00 0.00 3.41
1969 2550 9.105844 ACCAAGTTAGTGCTAGATATATCCATT 57.894 33.333 9.18 0.69 0.00 3.16
1970 2551 9.950496 CCAAGTTAGTGCTAGATATATCCATTT 57.050 33.333 9.18 0.00 0.00 2.32
1978 2559 9.944376 GTGCTAGATATATCCATTTAAGGAACA 57.056 33.333 9.18 0.00 41.92 3.18
1985 2566 5.665916 ATCCATTTAAGGAACAAGCTTGG 57.334 39.130 29.18 12.28 41.92 3.61
1986 2567 3.831911 TCCATTTAAGGAACAAGCTTGGG 59.168 43.478 29.18 16.37 33.93 4.12
1987 2568 3.831911 CCATTTAAGGAACAAGCTTGGGA 59.168 43.478 29.18 5.84 0.00 4.37
1988 2569 4.321974 CCATTTAAGGAACAAGCTTGGGAC 60.322 45.833 29.18 17.88 0.00 4.46
1989 2570 3.586470 TTAAGGAACAAGCTTGGGACA 57.414 42.857 29.18 7.44 0.00 4.02
2002 2583 1.981256 TGGGACAAGCTTTTCCAGAC 58.019 50.000 28.35 14.71 31.92 3.51
2003 2584 0.875059 GGGACAAGCTTTTCCAGACG 59.125 55.000 28.35 4.42 33.01 4.18
2004 2585 0.875059 GGACAAGCTTTTCCAGACGG 59.125 55.000 23.89 0.04 0.00 4.79
2005 2586 1.542547 GGACAAGCTTTTCCAGACGGA 60.543 52.381 23.89 0.00 40.60 4.69
2006 2587 1.801178 GACAAGCTTTTCCAGACGGAG 59.199 52.381 0.00 0.00 44.10 4.63
2007 2588 1.160137 CAAGCTTTTCCAGACGGAGG 58.840 55.000 0.00 0.00 44.10 4.30
2008 2589 0.036875 AAGCTTTTCCAGACGGAGGG 59.963 55.000 0.00 0.00 44.10 4.30
2009 2590 0.836400 AGCTTTTCCAGACGGAGGGA 60.836 55.000 0.00 0.00 44.10 4.20
2010 2591 0.391793 GCTTTTCCAGACGGAGGGAG 60.392 60.000 0.00 0.00 44.10 4.30
2011 2592 0.977395 CTTTTCCAGACGGAGGGAGT 59.023 55.000 0.00 0.00 44.10 3.85
2012 2593 2.176889 CTTTTCCAGACGGAGGGAGTA 58.823 52.381 0.00 0.00 44.10 2.59
2013 2594 2.544844 TTTCCAGACGGAGGGAGTAT 57.455 50.000 0.00 0.00 44.10 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
564 842 3.197983 AGATTTGCTAGTAAAGGTCGGCT 59.802 43.478 11.72 0.00 0.00 5.52
906 1462 4.603985 CTTCCTAACAACCGTTTCCAAAC 58.396 43.478 0.00 0.00 36.52 2.93
1419 1982 6.912591 CGCAAAATGAAGATAGGAACCATAAC 59.087 38.462 0.00 0.00 0.00 1.89
1471 2048 6.327279 TCAAAGTGACTCAATCGAACTAGA 57.673 37.500 0.00 0.00 0.00 2.43
1514 2092 4.324563 CCCTCCAAGTCACCATAACAGAAT 60.325 45.833 0.00 0.00 0.00 2.40
1561 2139 0.986019 TCCGGGTCAGGTTATGGCAT 60.986 55.000 4.88 4.88 34.12 4.40
1631 2212 2.367202 GCGGAGATGAGGTTGGGGA 61.367 63.158 0.00 0.00 0.00 4.81
1636 2217 3.090532 GGGGGCGGAGATGAGGTT 61.091 66.667 0.00 0.00 0.00 3.50
1637 2218 4.095400 AGGGGGCGGAGATGAGGT 62.095 66.667 0.00 0.00 0.00 3.85
1643 2224 4.144727 GGAGAGAGGGGGCGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
1685 2266 4.322801 GGAACACTAGTTGCTGACCACTAT 60.323 45.833 0.00 0.00 42.17 2.12
1687 2268 2.224305 GGAACACTAGTTGCTGACCACT 60.224 50.000 0.00 0.00 42.17 4.00
1730 2311 4.308458 CCAAGTCGTCCCGCACCA 62.308 66.667 0.00 0.00 0.00 4.17
1733 2314 2.264480 CATCCAAGTCGTCCCGCA 59.736 61.111 0.00 0.00 0.00 5.69
1797 2378 4.640855 CAGTCGTCCACACCGCGT 62.641 66.667 4.92 0.00 0.00 6.01
1800 2381 1.954146 CCAACAGTCGTCCACACCG 60.954 63.158 0.00 0.00 0.00 4.94
1815 2396 4.690719 CCGCTACCACGCCACCAA 62.691 66.667 0.00 0.00 0.00 3.67
1840 2421 2.279810 TGACCGATCCACGCCAAGA 61.280 57.895 0.00 0.00 41.07 3.02
1896 2477 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
1916 2497 8.736244 GCTAGGTACATTCATTTAAAGGACAAA 58.264 33.333 1.27 0.00 0.00 2.83
1917 2498 7.885922 TGCTAGGTACATTCATTTAAAGGACAA 59.114 33.333 1.27 0.00 0.00 3.18
1918 2499 7.335924 GTGCTAGGTACATTCATTTAAAGGACA 59.664 37.037 1.27 0.00 0.00 4.02
1919 2500 7.201705 GGTGCTAGGTACATTCATTTAAAGGAC 60.202 40.741 1.27 0.00 0.00 3.85
1920 2501 6.826741 GGTGCTAGGTACATTCATTTAAAGGA 59.173 38.462 0.00 0.00 0.00 3.36
1921 2502 6.601613 TGGTGCTAGGTACATTCATTTAAAGG 59.398 38.462 0.00 0.00 0.00 3.11
1922 2503 7.624360 TGGTGCTAGGTACATTCATTTAAAG 57.376 36.000 0.00 0.00 0.00 1.85
1923 2504 7.668052 ACTTGGTGCTAGGTACATTCATTTAAA 59.332 33.333 0.00 0.00 0.00 1.52
1924 2505 7.172342 ACTTGGTGCTAGGTACATTCATTTAA 58.828 34.615 0.00 0.00 0.00 1.52
1925 2506 6.717289 ACTTGGTGCTAGGTACATTCATTTA 58.283 36.000 0.00 0.00 0.00 1.40
1926 2507 5.570320 ACTTGGTGCTAGGTACATTCATTT 58.430 37.500 0.00 0.00 0.00 2.32
1927 2508 5.179452 ACTTGGTGCTAGGTACATTCATT 57.821 39.130 0.00 0.00 0.00 2.57
1928 2509 4.844349 ACTTGGTGCTAGGTACATTCAT 57.156 40.909 0.00 0.00 0.00 2.57
1929 2510 4.634012 AACTTGGTGCTAGGTACATTCA 57.366 40.909 0.00 0.00 0.00 2.57
1930 2511 5.581085 CACTAACTTGGTGCTAGGTACATTC 59.419 44.000 0.00 0.00 0.00 2.67
1931 2512 5.488341 CACTAACTTGGTGCTAGGTACATT 58.512 41.667 0.00 0.00 0.00 2.71
1932 2513 5.086104 CACTAACTTGGTGCTAGGTACAT 57.914 43.478 0.00 0.00 0.00 2.29
1933 2514 4.530710 CACTAACTTGGTGCTAGGTACA 57.469 45.455 0.00 0.00 0.00 2.90
1942 2523 7.896811 TGGATATATCTAGCACTAACTTGGTG 58.103 38.462 12.42 0.97 37.70 4.17
1943 2524 8.671987 ATGGATATATCTAGCACTAACTTGGT 57.328 34.615 12.42 0.00 0.00 3.67
1944 2525 9.950496 AAATGGATATATCTAGCACTAACTTGG 57.050 33.333 12.42 0.00 0.00 3.61
1952 2533 9.944376 TGTTCCTTAAATGGATATATCTAGCAC 57.056 33.333 12.42 0.00 35.83 4.40
1959 2540 9.082313 CCAAGCTTGTTCCTTAAATGGATATAT 57.918 33.333 24.35 0.00 35.83 0.86
1960 2541 7.505585 CCCAAGCTTGTTCCTTAAATGGATATA 59.494 37.037 24.35 0.00 35.83 0.86
1961 2542 6.324770 CCCAAGCTTGTTCCTTAAATGGATAT 59.675 38.462 24.35 0.00 35.83 1.63
1962 2543 5.656416 CCCAAGCTTGTTCCTTAAATGGATA 59.344 40.000 24.35 0.00 35.83 2.59
1963 2544 4.467438 CCCAAGCTTGTTCCTTAAATGGAT 59.533 41.667 24.35 0.00 35.83 3.41
1964 2545 3.831911 CCCAAGCTTGTTCCTTAAATGGA 59.168 43.478 24.35 0.00 0.00 3.41
1965 2546 3.831911 TCCCAAGCTTGTTCCTTAAATGG 59.168 43.478 24.35 14.01 0.00 3.16
1966 2547 4.280677 TGTCCCAAGCTTGTTCCTTAAATG 59.719 41.667 24.35 5.47 0.00 2.32
1967 2548 4.479158 TGTCCCAAGCTTGTTCCTTAAAT 58.521 39.130 24.35 0.00 0.00 1.40
1968 2549 3.904717 TGTCCCAAGCTTGTTCCTTAAA 58.095 40.909 24.35 0.00 0.00 1.52
1969 2550 3.586470 TGTCCCAAGCTTGTTCCTTAA 57.414 42.857 24.35 1.41 0.00 1.85
1970 2551 3.486383 CTTGTCCCAAGCTTGTTCCTTA 58.514 45.455 24.35 5.17 0.00 2.69
1971 2552 2.310538 CTTGTCCCAAGCTTGTTCCTT 58.689 47.619 24.35 0.00 0.00 3.36
1972 2553 1.986882 CTTGTCCCAAGCTTGTTCCT 58.013 50.000 24.35 0.00 0.00 3.36
1973 2554 0.315251 GCTTGTCCCAAGCTTGTTCC 59.685 55.000 24.35 11.81 40.01 3.62
1974 2555 3.873805 GCTTGTCCCAAGCTTGTTC 57.126 52.632 24.35 14.17 40.01 3.18
1980 2561 1.000171 CTGGAAAAGCTTGTCCCAAGC 60.000 52.381 29.33 18.69 43.31 4.01
1981 2562 2.294512 GTCTGGAAAAGCTTGTCCCAAG 59.705 50.000 29.33 21.49 32.48 3.61
1982 2563 2.306847 GTCTGGAAAAGCTTGTCCCAA 58.693 47.619 29.33 16.45 32.48 4.12
1983 2564 1.813862 CGTCTGGAAAAGCTTGTCCCA 60.814 52.381 29.33 20.18 32.48 4.37
1984 2565 0.875059 CGTCTGGAAAAGCTTGTCCC 59.125 55.000 29.33 15.25 32.48 4.46
1985 2566 0.875059 CCGTCTGGAAAAGCTTGTCC 59.125 55.000 26.56 26.56 37.49 4.02
1986 2567 1.801178 CTCCGTCTGGAAAAGCTTGTC 59.199 52.381 8.23 8.23 45.87 3.18
1987 2568 1.543429 CCTCCGTCTGGAAAAGCTTGT 60.543 52.381 0.00 0.00 45.87 3.16
1988 2569 1.160137 CCTCCGTCTGGAAAAGCTTG 58.840 55.000 0.00 0.00 45.87 4.01
1989 2570 0.036875 CCCTCCGTCTGGAAAAGCTT 59.963 55.000 0.00 0.00 45.87 3.74
1990 2571 0.836400 TCCCTCCGTCTGGAAAAGCT 60.836 55.000 0.00 0.00 45.87 3.74
1991 2572 0.391793 CTCCCTCCGTCTGGAAAAGC 60.392 60.000 0.00 0.00 45.87 3.51
1992 2573 0.977395 ACTCCCTCCGTCTGGAAAAG 59.023 55.000 0.00 0.00 45.87 2.27
1993 2574 2.314071 TACTCCCTCCGTCTGGAAAA 57.686 50.000 0.00 0.00 45.87 2.29
1994 2575 2.544844 ATACTCCCTCCGTCTGGAAA 57.455 50.000 0.00 0.00 45.87 3.13
1995 2576 2.544844 AATACTCCCTCCGTCTGGAA 57.455 50.000 0.00 0.00 45.87 3.53
1996 2577 2.544844 AAATACTCCCTCCGTCTGGA 57.455 50.000 0.00 0.00 43.88 3.86
1997 2578 3.629142 AAAAATACTCCCTCCGTCTGG 57.371 47.619 0.00 0.00 0.00 3.86
2048 2632 6.395426 AAGCACATGAGTTTTCTTCATTGA 57.605 33.333 0.00 0.00 0.00 2.57
2051 2635 7.437267 CAGAAAAAGCACATGAGTTTTCTTCAT 59.563 33.333 18.69 8.74 44.08 2.57



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.