Multiple sequence alignment - TraesCS1B01G369200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G369200 chr1B 100.000 3932 0 0 1 3932 599343294 599339363 0.000000e+00 7262.0
1 TraesCS1B01G369200 chr1B 89.516 124 11 2 709 831 522116614 522116492 5.260000e-34 156.0
2 TraesCS1B01G369200 chr1B 89.344 122 11 2 711 831 72705750 72705870 6.810000e-33 152.0
3 TraesCS1B01G369200 chr1D 93.838 2353 114 8 841 3186 441305152 441302824 0.000000e+00 3513.0
4 TraesCS1B01G369200 chr1D 92.897 718 47 2 3219 3932 441302821 441302104 0.000000e+00 1040.0
5 TraesCS1B01G369200 chr1D 90.598 117 10 1 716 831 392560974 392561090 1.890000e-33 154.0
6 TraesCS1B01G369200 chr1D 97.778 45 1 0 330 374 441305594 441305550 1.170000e-10 78.7
7 TraesCS1B01G369200 chr1A 92.495 2385 125 22 841 3186 536658536 536660905 0.000000e+00 3363.0
8 TraesCS1B01G369200 chr1A 93.241 725 42 3 3214 3932 536660904 536661627 0.000000e+00 1061.0
9 TraesCS1B01G369200 chr1A 86.923 390 41 7 330 716 536658134 536658516 2.810000e-116 429.0
10 TraesCS1B01G369200 chr2A 91.904 457 22 2 1245 1701 35434330 35433889 3.340000e-175 625.0
11 TraesCS1B01G369200 chr2A 87.869 305 36 1 382 685 459017307 459017003 1.340000e-94 357.0
12 TraesCS1B01G369200 chr2A 87.789 303 34 3 386 685 743571625 743571927 6.250000e-93 351.0
13 TraesCS1B01G369200 chr2A 87.209 86 11 0 3847 3932 546791501 546791416 8.990000e-17 99.0
14 TraesCS1B01G369200 chr2A 96.429 56 2 0 1697 1752 35422849 35422794 4.180000e-15 93.5
15 TraesCS1B01G369200 chr2A 86.047 86 12 0 3847 3932 547001866 547001781 4.180000e-15 93.5
16 TraesCS1B01G369200 chr2A 86.047 86 12 0 3847 3932 568278692 568278777 4.180000e-15 93.5
17 TraesCS1B01G369200 chr2A 85.366 82 12 0 3851 3932 567731698 567731779 7.000000e-13 86.1
18 TraesCS1B01G369200 chr3B 94.099 322 18 1 2 322 257285738 257286059 4.570000e-134 488.0
19 TraesCS1B01G369200 chr3B 87.147 319 37 4 379 694 623667275 623667592 3.740000e-95 359.0
20 TraesCS1B01G369200 chr7B 93.789 322 19 1 2 322 245284880 245284559 2.120000e-132 483.0
21 TraesCS1B01G369200 chr7B 93.769 321 19 1 2 321 165522866 165523186 7.640000e-132 481.0
22 TraesCS1B01G369200 chr7B 90.164 122 10 2 713 832 115517981 115517860 1.460000e-34 158.0
23 TraesCS1B01G369200 chr4B 93.769 321 19 1 2 321 232094318 232093998 7.640000e-132 481.0
24 TraesCS1B01G369200 chr4B 93.030 330 20 3 2 329 271390791 271391119 2.750000e-131 479.0
25 TraesCS1B01G369200 chr4B 87.460 311 35 4 377 684 575776920 575776611 4.830000e-94 355.0
26 TraesCS1B01G369200 chr4B 87.597 129 14 2 716 843 636915348 636915221 8.800000e-32 148.0
27 TraesCS1B01G369200 chr4B 86.364 88 8 3 3847 3932 404487363 404487448 4.180000e-15 93.5
28 TraesCS1B01G369200 chr2B 93.769 321 17 3 2 321 199839641 199839323 2.750000e-131 479.0
29 TraesCS1B01G369200 chr2B 93.498 323 19 2 2 322 213534045 213533723 2.750000e-131 479.0
30 TraesCS1B01G369200 chr2B 87.786 131 12 4 705 833 716598345 716598217 2.450000e-32 150.0
31 TraesCS1B01G369200 chr2B 84.706 85 13 0 3848 3932 494255666 494255750 7.000000e-13 86.1
32 TraesCS1B01G369200 chr4D 93.478 322 20 1 2 322 331621757 331622078 9.880000e-131 477.0
33 TraesCS1B01G369200 chr4D 88.119 303 34 2 384 684 226385251 226384949 3.740000e-95 359.0
34 TraesCS1B01G369200 chr6B 91.964 336 24 3 2 335 451571532 451571198 5.950000e-128 468.0
35 TraesCS1B01G369200 chr6B 87.500 304 36 2 383 684 634640324 634640627 2.250000e-92 350.0
36 TraesCS1B01G369200 chr6B 90.909 121 10 1 716 835 44106411 44106531 1.130000e-35 161.0
37 TraesCS1B01G369200 chr5A 95.868 242 10 0 1556 1797 592634407 592634166 3.680000e-105 392.0
38 TraesCS1B01G369200 chr5A 87.960 299 35 1 387 684 647359852 647359554 6.250000e-93 351.0
39 TraesCS1B01G369200 chrUn 87.296 307 35 4 385 687 39467929 39467623 8.090000e-92 348.0
40 TraesCS1B01G369200 chr2D 89.516 124 12 1 713 835 213699109 213698986 5.260000e-34 156.0
41 TraesCS1B01G369200 chr2D 90.598 117 10 1 716 831 418057518 418057634 1.890000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G369200 chr1B 599339363 599343294 3931 True 7262.000000 7262 100.000000 1 3932 1 chr1B.!!$R2 3931
1 TraesCS1B01G369200 chr1D 441302104 441305594 3490 True 1543.900000 3513 94.837667 330 3932 3 chr1D.!!$R1 3602
2 TraesCS1B01G369200 chr1A 536658134 536661627 3493 False 1617.666667 3363 90.886333 330 3932 3 chr1A.!!$F1 3602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.036388 GTGGGTCGTGTCCATCACAT 60.036 55.0 0.00 0.00 46.44 3.21 F
896 955 0.103208 GCCTCACATCGTCAGGTAGG 59.897 60.0 0.00 0.00 0.00 3.18 F
1740 1818 0.106519 AACTGCAGGACAAGCTTGGT 60.107 50.0 29.18 15.37 0.00 3.67 F
2342 2420 0.249120 ATCATCGACGGCTTGGTTGA 59.751 50.0 0.00 0.00 34.91 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 2151 0.106149 CCGGCACCACCTTATACTCC 59.894 60.0 0.0 0.0 35.61 3.85 R
2456 2534 0.036022 TGCATCATCCAACCGTGTCA 59.964 50.0 0.0 0.0 0.00 3.58 R
2811 2889 0.036388 TCCCGGCATCAAGAGTGTTC 60.036 55.0 0.0 0.0 0.00 3.18 R
3198 3295 0.179105 TGGAACGCTGTAACACACGT 60.179 50.0 0.0 0.0 37.41 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.177608 AGCAATAGCAATAAAACTGAACTATCA 57.822 29.630 0.00 0.00 45.49 2.15
38 39 9.956720 GCAATAGCAATAAAACTGAACTATCAT 57.043 29.630 0.00 0.00 41.58 2.45
43 44 9.956720 AGCAATAAAACTGAACTATCATAATGC 57.043 29.630 0.00 0.00 34.37 3.56
44 45 9.956720 GCAATAAAACTGAACTATCATAATGCT 57.043 29.630 0.00 0.00 34.37 3.79
49 50 8.970859 AAACTGAACTATCATAATGCTAAGCT 57.029 30.769 0.00 0.00 34.37 3.74
52 53 9.482627 ACTGAACTATCATAATGCTAAGCTAAC 57.517 33.333 0.00 0.00 34.37 2.34
53 54 8.520835 TGAACTATCATAATGCTAAGCTAACG 57.479 34.615 0.00 0.00 0.00 3.18
54 55 8.357402 TGAACTATCATAATGCTAAGCTAACGA 58.643 33.333 0.00 0.00 0.00 3.85
55 56 8.749841 AACTATCATAATGCTAAGCTAACGAG 57.250 34.615 0.00 0.00 0.00 4.18
56 57 7.887381 ACTATCATAATGCTAAGCTAACGAGT 58.113 34.615 0.00 0.00 0.00 4.18
57 58 7.810282 ACTATCATAATGCTAAGCTAACGAGTG 59.190 37.037 0.00 0.00 0.00 3.51
58 59 5.289595 TCATAATGCTAAGCTAACGAGTGG 58.710 41.667 0.00 0.00 0.00 4.00
59 60 2.604046 ATGCTAAGCTAACGAGTGGG 57.396 50.000 0.00 0.00 0.00 4.61
60 61 1.263356 TGCTAAGCTAACGAGTGGGT 58.737 50.000 0.00 0.00 0.00 4.51
61 62 1.203994 TGCTAAGCTAACGAGTGGGTC 59.796 52.381 0.00 0.00 0.00 4.46
69 70 2.970639 CGAGTGGGTCGTGTCCAT 59.029 61.111 0.00 0.00 44.20 3.41
70 71 1.153823 CGAGTGGGTCGTGTCCATC 60.154 63.158 0.00 0.00 44.20 3.51
71 72 1.873270 CGAGTGGGTCGTGTCCATCA 61.873 60.000 0.00 0.00 44.20 3.07
72 73 0.389948 GAGTGGGTCGTGTCCATCAC 60.390 60.000 0.00 0.00 43.03 3.06
73 74 1.118965 AGTGGGTCGTGTCCATCACA 61.119 55.000 0.00 0.00 46.44 3.58
74 75 0.036388 GTGGGTCGTGTCCATCACAT 60.036 55.000 0.00 0.00 46.44 3.21
75 76 0.249120 TGGGTCGTGTCCATCACATC 59.751 55.000 0.00 0.00 46.44 3.06
76 77 0.249120 GGGTCGTGTCCATCACATCA 59.751 55.000 0.00 0.00 46.44 3.07
77 78 1.134401 GGGTCGTGTCCATCACATCAT 60.134 52.381 0.00 0.00 46.44 2.45
78 79 2.632377 GGTCGTGTCCATCACATCATT 58.368 47.619 0.00 0.00 46.44 2.57
79 80 2.609459 GGTCGTGTCCATCACATCATTC 59.391 50.000 0.00 0.00 46.44 2.67
80 81 3.525537 GTCGTGTCCATCACATCATTCT 58.474 45.455 0.00 0.00 46.44 2.40
81 82 3.553511 GTCGTGTCCATCACATCATTCTC 59.446 47.826 0.00 0.00 46.44 2.87
82 83 2.868583 CGTGTCCATCACATCATTCTCC 59.131 50.000 0.00 0.00 46.44 3.71
83 84 3.431346 CGTGTCCATCACATCATTCTCCT 60.431 47.826 0.00 0.00 46.44 3.69
84 85 4.202151 CGTGTCCATCACATCATTCTCCTA 60.202 45.833 0.00 0.00 46.44 2.94
85 86 5.674525 GTGTCCATCACATCATTCTCCTAA 58.325 41.667 0.00 0.00 45.51 2.69
86 87 6.294473 GTGTCCATCACATCATTCTCCTAAT 58.706 40.000 0.00 0.00 45.51 1.73
87 88 6.204301 GTGTCCATCACATCATTCTCCTAATG 59.796 42.308 0.00 0.00 45.51 1.90
88 89 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
89 90 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
98 99 6.685657 TCATTCTCCTAATGATGTGATCTCG 58.314 40.000 0.00 0.00 32.21 4.04
99 100 6.266330 TCATTCTCCTAATGATGTGATCTCGT 59.734 38.462 0.00 0.00 32.21 4.18
100 101 6.471233 TTCTCCTAATGATGTGATCTCGTT 57.529 37.500 0.00 0.00 0.00 3.85
101 102 6.471233 TCTCCTAATGATGTGATCTCGTTT 57.529 37.500 0.00 0.00 0.00 3.60
102 103 7.582667 TCTCCTAATGATGTGATCTCGTTTA 57.417 36.000 0.00 0.00 0.00 2.01
103 104 8.183104 TCTCCTAATGATGTGATCTCGTTTAT 57.817 34.615 0.00 0.00 0.00 1.40
104 105 8.300286 TCTCCTAATGATGTGATCTCGTTTATC 58.700 37.037 0.00 0.00 0.00 1.75
105 106 7.951591 TCCTAATGATGTGATCTCGTTTATCA 58.048 34.615 0.00 0.00 0.00 2.15
106 107 8.421002 TCCTAATGATGTGATCTCGTTTATCAA 58.579 33.333 0.00 0.00 35.23 2.57
107 108 9.045223 CCTAATGATGTGATCTCGTTTATCAAA 57.955 33.333 0.00 0.00 35.23 2.69
110 111 8.667076 ATGATGTGATCTCGTTTATCAAATGA 57.333 30.769 0.00 0.00 32.53 2.57
111 112 7.909267 TGATGTGATCTCGTTTATCAAATGAC 58.091 34.615 0.00 0.00 32.53 3.06
112 113 7.548780 TGATGTGATCTCGTTTATCAAATGACA 59.451 33.333 0.00 0.00 32.53 3.58
113 114 7.665561 TGTGATCTCGTTTATCAAATGACAA 57.334 32.000 0.00 0.00 35.23 3.18
114 115 7.518161 TGTGATCTCGTTTATCAAATGACAAC 58.482 34.615 0.00 0.00 35.23 3.32
115 116 7.172361 TGTGATCTCGTTTATCAAATGACAACA 59.828 33.333 0.00 0.00 35.23 3.33
116 117 7.478667 GTGATCTCGTTTATCAAATGACAACAC 59.521 37.037 0.00 0.00 35.23 3.32
117 118 6.852858 TCTCGTTTATCAAATGACAACACA 57.147 33.333 7.64 0.00 33.15 3.72
118 119 7.433708 TCTCGTTTATCAAATGACAACACAT 57.566 32.000 7.64 0.00 33.15 3.21
119 120 7.297391 TCTCGTTTATCAAATGACAACACATG 58.703 34.615 0.00 0.00 33.15 3.21
132 133 5.420725 ACAACACATGTCTATGCTTAGGA 57.579 39.130 0.00 0.00 37.96 2.94
133 134 5.804639 ACAACACATGTCTATGCTTAGGAA 58.195 37.500 0.00 0.00 37.96 3.36
134 135 6.237901 ACAACACATGTCTATGCTTAGGAAA 58.762 36.000 0.00 0.00 37.96 3.13
135 136 6.149474 ACAACACATGTCTATGCTTAGGAAAC 59.851 38.462 0.00 0.00 37.96 2.78
136 137 6.054860 ACACATGTCTATGCTTAGGAAACT 57.945 37.500 0.00 0.00 40.41 2.66
137 138 6.476378 ACACATGTCTATGCTTAGGAAACTT 58.524 36.000 0.00 0.00 38.82 2.66
138 139 7.620880 ACACATGTCTATGCTTAGGAAACTTA 58.379 34.615 0.00 0.00 38.82 2.24
139 140 8.100791 ACACATGTCTATGCTTAGGAAACTTAA 58.899 33.333 0.00 0.00 38.82 1.85
140 141 8.391106 CACATGTCTATGCTTAGGAAACTTAAC 58.609 37.037 0.00 0.00 38.82 2.01
141 142 7.553044 ACATGTCTATGCTTAGGAAACTTAACC 59.447 37.037 6.78 0.00 38.82 2.85
142 143 7.011499 TGTCTATGCTTAGGAAACTTAACCA 57.989 36.000 6.78 0.00 43.67 3.67
143 144 7.630082 TGTCTATGCTTAGGAAACTTAACCAT 58.370 34.615 6.78 0.00 43.67 3.55
144 145 8.107095 TGTCTATGCTTAGGAAACTTAACCATT 58.893 33.333 6.78 0.00 43.67 3.16
145 146 8.957466 GTCTATGCTTAGGAAACTTAACCATTT 58.043 33.333 6.78 0.00 43.67 2.32
146 147 9.528489 TCTATGCTTAGGAAACTTAACCATTTT 57.472 29.630 6.78 0.00 43.67 1.82
155 156 8.852135 AGGAAACTTAACCATTTTTATCAACGA 58.148 29.630 0.00 0.00 37.44 3.85
156 157 9.124807 GGAAACTTAACCATTTTTATCAACGAG 57.875 33.333 0.00 0.00 0.00 4.18
157 158 9.887406 GAAACTTAACCATTTTTATCAACGAGA 57.113 29.630 0.00 0.00 0.00 4.04
165 166 9.530633 ACCATTTTTATCAACGAGATAGTCTAC 57.469 33.333 0.00 0.00 40.20 2.59
166 167 9.751542 CCATTTTTATCAACGAGATAGTCTACT 57.248 33.333 0.00 0.00 40.20 2.57
171 172 9.491675 TTTATCAACGAGATAGTCTACTAGAGG 57.508 37.037 0.00 0.00 40.20 3.69
172 173 5.299148 TCAACGAGATAGTCTACTAGAGGC 58.701 45.833 0.00 0.00 0.00 4.70
173 174 5.070714 TCAACGAGATAGTCTACTAGAGGCT 59.929 44.000 0.00 0.00 44.48 4.58
174 175 5.556006 ACGAGATAGTCTACTAGAGGCTT 57.444 43.478 0.00 0.00 36.38 4.35
175 176 6.669125 ACGAGATAGTCTACTAGAGGCTTA 57.331 41.667 0.00 0.00 36.38 3.09
176 177 6.458210 ACGAGATAGTCTACTAGAGGCTTAC 58.542 44.000 0.00 0.00 36.38 2.34
177 178 6.268387 ACGAGATAGTCTACTAGAGGCTTACT 59.732 42.308 0.00 0.34 36.38 2.24
178 179 7.451255 ACGAGATAGTCTACTAGAGGCTTACTA 59.549 40.741 0.00 0.00 36.38 1.82
179 180 7.972277 CGAGATAGTCTACTAGAGGCTTACTAG 59.028 44.444 8.32 8.32 36.38 2.57
180 181 8.142485 AGATAGTCTACTAGAGGCTTACTAGG 57.858 42.308 13.13 0.00 36.38 3.02
181 182 5.571791 AGTCTACTAGAGGCTTACTAGGG 57.428 47.826 13.13 7.01 36.38 3.53
182 183 5.226015 AGTCTACTAGAGGCTTACTAGGGA 58.774 45.833 13.13 8.71 36.38 4.20
183 184 5.072193 AGTCTACTAGAGGCTTACTAGGGAC 59.928 48.000 19.14 19.14 36.38 4.46
184 185 4.973856 TCTACTAGAGGCTTACTAGGGACA 59.026 45.833 13.13 0.00 40.86 4.02
185 186 3.900971 ACTAGAGGCTTACTAGGGACAC 58.099 50.000 13.13 0.00 40.86 3.67
186 187 2.921834 AGAGGCTTACTAGGGACACA 57.078 50.000 0.00 0.00 0.00 3.72
187 188 2.741145 AGAGGCTTACTAGGGACACAG 58.259 52.381 0.00 0.00 0.00 3.66
188 189 2.043252 AGAGGCTTACTAGGGACACAGT 59.957 50.000 0.00 0.00 0.00 3.55
189 190 2.166664 GAGGCTTACTAGGGACACAGTG 59.833 54.545 0.00 0.00 0.00 3.66
190 191 1.900486 GGCTTACTAGGGACACAGTGT 59.100 52.381 5.68 5.68 0.00 3.55
191 192 2.302157 GGCTTACTAGGGACACAGTGTT 59.698 50.000 7.86 0.00 0.00 3.32
192 193 3.244457 GGCTTACTAGGGACACAGTGTTT 60.244 47.826 7.86 0.00 0.00 2.83
193 194 4.386711 GCTTACTAGGGACACAGTGTTTT 58.613 43.478 7.86 0.00 0.00 2.43
194 195 4.213482 GCTTACTAGGGACACAGTGTTTTG 59.787 45.833 7.86 1.23 0.00 2.44
195 196 3.926058 ACTAGGGACACAGTGTTTTGT 57.074 42.857 7.86 1.83 0.00 2.83
196 197 3.805207 ACTAGGGACACAGTGTTTTGTC 58.195 45.455 7.86 0.00 41.28 3.18
197 198 3.454812 ACTAGGGACACAGTGTTTTGTCT 59.545 43.478 7.86 4.38 41.65 3.41
198 199 4.652421 ACTAGGGACACAGTGTTTTGTCTA 59.348 41.667 7.86 5.24 41.65 2.59
199 200 4.706842 AGGGACACAGTGTTTTGTCTAT 57.293 40.909 7.86 0.20 41.65 1.98
200 201 4.389374 AGGGACACAGTGTTTTGTCTATG 58.611 43.478 7.86 0.00 41.65 2.23
201 202 4.134563 GGGACACAGTGTTTTGTCTATGT 58.865 43.478 7.86 0.00 41.65 2.29
202 203 5.071250 AGGGACACAGTGTTTTGTCTATGTA 59.929 40.000 7.86 0.00 41.65 2.29
203 204 5.938125 GGGACACAGTGTTTTGTCTATGTAT 59.062 40.000 7.86 0.00 41.65 2.29
204 205 6.092259 GGGACACAGTGTTTTGTCTATGTATC 59.908 42.308 7.86 0.00 41.65 2.24
205 206 6.092259 GGACACAGTGTTTTGTCTATGTATCC 59.908 42.308 7.86 0.00 41.65 2.59
206 207 6.530120 ACACAGTGTTTTGTCTATGTATCCA 58.470 36.000 0.00 0.00 0.00 3.41
207 208 6.426937 ACACAGTGTTTTGTCTATGTATCCAC 59.573 38.462 0.00 0.00 0.00 4.02
208 209 6.426633 CACAGTGTTTTGTCTATGTATCCACA 59.573 38.462 0.00 0.00 39.52 4.17
209 210 6.426937 ACAGTGTTTTGTCTATGTATCCACAC 59.573 38.462 0.00 0.00 37.54 3.82
210 211 6.426633 CAGTGTTTTGTCTATGTATCCACACA 59.573 38.462 0.00 0.00 37.54 3.72
211 212 7.119699 CAGTGTTTTGTCTATGTATCCACACAT 59.880 37.037 0.00 0.00 41.88 3.21
212 213 7.119699 AGTGTTTTGTCTATGTATCCACACATG 59.880 37.037 0.00 0.00 39.46 3.21
213 214 6.128035 TGTTTTGTCTATGTATCCACACATGC 60.128 38.462 0.00 0.00 39.46 4.06
214 215 4.751767 TGTCTATGTATCCACACATGCA 57.248 40.909 0.00 0.00 39.46 3.96
215 216 5.294734 TGTCTATGTATCCACACATGCAT 57.705 39.130 0.00 0.00 39.46 3.96
216 217 5.299949 TGTCTATGTATCCACACATGCATC 58.700 41.667 0.00 0.00 39.46 3.91
217 218 5.163322 TGTCTATGTATCCACACATGCATCA 60.163 40.000 0.00 0.00 39.46 3.07
218 219 5.759763 GTCTATGTATCCACACATGCATCAA 59.240 40.000 0.00 0.00 39.46 2.57
219 220 5.993441 TCTATGTATCCACACATGCATCAAG 59.007 40.000 0.00 0.00 39.46 3.02
220 221 3.954200 TGTATCCACACATGCATCAAGT 58.046 40.909 0.00 0.00 0.00 3.16
221 222 4.334552 TGTATCCACACATGCATCAAGTT 58.665 39.130 0.00 0.00 0.00 2.66
222 223 4.766373 TGTATCCACACATGCATCAAGTTT 59.234 37.500 0.00 0.00 0.00 2.66
223 224 4.877378 ATCCACACATGCATCAAGTTTT 57.123 36.364 0.00 0.00 0.00 2.43
224 225 4.241590 TCCACACATGCATCAAGTTTTC 57.758 40.909 0.00 0.00 0.00 2.29
225 226 2.981805 CCACACATGCATCAAGTTTTCG 59.018 45.455 0.00 0.00 0.00 3.46
226 227 2.981805 CACACATGCATCAAGTTTTCGG 59.018 45.455 0.00 0.00 0.00 4.30
227 228 2.622942 ACACATGCATCAAGTTTTCGGT 59.377 40.909 0.00 0.00 0.00 4.69
228 229 3.068024 ACACATGCATCAAGTTTTCGGTT 59.932 39.130 0.00 0.00 0.00 4.44
229 230 4.277174 ACACATGCATCAAGTTTTCGGTTA 59.723 37.500 0.00 0.00 0.00 2.85
230 231 5.218885 CACATGCATCAAGTTTTCGGTTAA 58.781 37.500 0.00 0.00 0.00 2.01
231 232 5.863397 CACATGCATCAAGTTTTCGGTTAAT 59.137 36.000 0.00 0.00 0.00 1.40
232 233 7.026562 CACATGCATCAAGTTTTCGGTTAATA 58.973 34.615 0.00 0.00 0.00 0.98
233 234 7.008266 CACATGCATCAAGTTTTCGGTTAATAC 59.992 37.037 0.00 0.00 0.00 1.89
234 235 6.561737 TGCATCAAGTTTTCGGTTAATACA 57.438 33.333 0.00 0.00 0.00 2.29
235 236 6.971602 TGCATCAAGTTTTCGGTTAATACAA 58.028 32.000 0.00 0.00 0.00 2.41
236 237 7.598278 TGCATCAAGTTTTCGGTTAATACAAT 58.402 30.769 0.00 0.00 0.00 2.71
237 238 8.085296 TGCATCAAGTTTTCGGTTAATACAATT 58.915 29.630 0.00 0.00 0.00 2.32
238 239 8.583765 GCATCAAGTTTTCGGTTAATACAATTC 58.416 33.333 0.00 0.00 0.00 2.17
239 240 9.840427 CATCAAGTTTTCGGTTAATACAATTCT 57.160 29.630 0.00 0.00 0.00 2.40
242 243 9.274065 CAAGTTTTCGGTTAATACAATTCTAGC 57.726 33.333 0.00 0.00 0.00 3.42
243 244 8.556213 AGTTTTCGGTTAATACAATTCTAGCA 57.444 30.769 0.00 0.00 0.00 3.49
244 245 9.174166 AGTTTTCGGTTAATACAATTCTAGCAT 57.826 29.630 0.00 0.00 0.00 3.79
245 246 9.221775 GTTTTCGGTTAATACAATTCTAGCATG 57.778 33.333 0.00 0.00 0.00 4.06
246 247 7.490962 TTCGGTTAATACAATTCTAGCATGG 57.509 36.000 0.00 0.00 0.00 3.66
247 248 6.822442 TCGGTTAATACAATTCTAGCATGGA 58.178 36.000 0.00 0.00 0.00 3.41
248 249 7.450074 TCGGTTAATACAATTCTAGCATGGAT 58.550 34.615 0.00 0.00 0.00 3.41
249 250 8.590204 TCGGTTAATACAATTCTAGCATGGATA 58.410 33.333 0.00 0.00 0.00 2.59
250 251 9.214957 CGGTTAATACAATTCTAGCATGGATAA 57.785 33.333 0.00 0.00 0.00 1.75
322 323 3.931578 CCTCTAGGGCATATTTCCTTCG 58.068 50.000 0.00 0.00 34.75 3.79
323 324 3.325135 CCTCTAGGGCATATTTCCTTCGT 59.675 47.826 0.00 0.00 34.75 3.85
324 325 4.527038 CCTCTAGGGCATATTTCCTTCGTA 59.473 45.833 0.00 0.00 34.75 3.43
325 326 5.011738 CCTCTAGGGCATATTTCCTTCGTAA 59.988 44.000 0.00 0.00 34.75 3.18
326 327 6.295916 CCTCTAGGGCATATTTCCTTCGTAAT 60.296 42.308 0.00 0.00 34.75 1.89
327 328 7.093465 CCTCTAGGGCATATTTCCTTCGTAATA 60.093 40.741 0.00 0.00 34.75 0.98
328 329 8.197592 TCTAGGGCATATTTCCTTCGTAATAA 57.802 34.615 0.00 0.00 34.75 1.40
398 452 5.413309 AATTTTTGTGAACCAACCTGTGA 57.587 34.783 0.00 0.00 31.20 3.58
410 465 2.684881 CAACCTGTGATTGGATGGTAGC 59.315 50.000 0.00 0.00 0.00 3.58
430 485 2.461695 CAGGACAGTGGTATCCTCAGT 58.538 52.381 0.00 0.00 43.84 3.41
432 487 2.313342 AGGACAGTGGTATCCTCAGTCT 59.687 50.000 11.13 0.00 41.83 3.24
435 490 4.528920 GACAGTGGTATCCTCAGTCTACT 58.471 47.826 0.00 0.00 33.07 2.57
449 504 3.447944 CAGTCTACTAGGGTTCAAGTCCC 59.552 52.174 0.00 0.00 44.90 4.46
479 534 8.078596 GCTCGCATTATTTCTGGATTTATTTCT 58.921 33.333 0.00 0.00 0.00 2.52
495 551 8.682936 ATTTATTTCTAGATTTCTGGCGATGT 57.317 30.769 0.00 0.00 0.00 3.06
496 552 8.506168 TTTATTTCTAGATTTCTGGCGATGTT 57.494 30.769 0.00 0.00 0.00 2.71
498 554 3.706698 TCTAGATTTCTGGCGATGTTCG 58.293 45.455 0.00 0.00 43.89 3.95
509 565 1.068474 CGATGTTCGTTCAGTGGGAC 58.932 55.000 0.00 0.00 34.72 4.46
541 597 3.337619 GACGACGAGGCGCCTATA 58.662 61.111 32.97 0.00 33.86 1.31
598 654 2.025155 GTCTCTCGGAGGTGCTCATAA 58.975 52.381 4.96 0.00 31.08 1.90
601 657 0.249657 CTCGGAGGTGCTCATAAGGC 60.250 60.000 0.00 0.00 31.08 4.35
605 661 1.346068 GGAGGTGCTCATAAGGCTAGG 59.654 57.143 0.00 0.00 31.08 3.02
612 668 1.486310 CTCATAAGGCTAGGGTGTGCA 59.514 52.381 0.00 0.00 0.00 4.57
673 729 0.580104 GCGTTTGCGTCTGTACTGTT 59.420 50.000 0.00 0.00 40.81 3.16
676 732 3.676540 CGTTTGCGTCTGTACTGTTTTT 58.323 40.909 0.00 0.00 0.00 1.94
677 733 4.782822 GCGTTTGCGTCTGTACTGTTTTTA 60.783 41.667 0.00 0.00 40.81 1.52
726 783 6.494835 ACGGTATTAATTATTACTCCCTCCGT 59.505 38.462 14.18 11.84 39.89 4.69
727 784 7.015584 ACGGTATTAATTATTACTCCCTCCGTT 59.984 37.037 14.18 1.98 41.47 4.44
729 786 8.996271 GGTATTAATTATTACTCCCTCCGTTTG 58.004 37.037 14.18 0.00 0.00 2.93
730 787 9.768662 GTATTAATTATTACTCCCTCCGTTTGA 57.231 33.333 9.34 0.00 0.00 2.69
732 789 9.689501 ATTAATTATTACTCCCTCCGTTTGAAA 57.310 29.630 0.00 0.00 0.00 2.69
733 790 6.997239 ATTATTACTCCCTCCGTTTGAAAC 57.003 37.500 0.00 0.00 0.00 2.78
737 794 4.635699 ACTCCCTCCGTTTGAAACTATT 57.364 40.909 6.49 0.00 0.00 1.73
738 795 4.576879 ACTCCCTCCGTTTGAAACTATTC 58.423 43.478 6.49 0.00 36.04 1.75
739 796 4.041198 ACTCCCTCCGTTTGAAACTATTCA 59.959 41.667 6.49 0.00 43.70 2.57
740 797 5.174037 TCCCTCCGTTTGAAACTATTCAT 57.826 39.130 6.49 0.00 44.70 2.57
741 798 5.183228 TCCCTCCGTTTGAAACTATTCATC 58.817 41.667 6.49 0.00 44.70 2.92
742 799 4.941263 CCCTCCGTTTGAAACTATTCATCA 59.059 41.667 6.49 0.00 44.70 3.07
743 800 5.414454 CCCTCCGTTTGAAACTATTCATCAA 59.586 40.000 6.49 0.00 44.70 2.57
744 801 6.072175 CCCTCCGTTTGAAACTATTCATCAAA 60.072 38.462 6.49 0.00 44.70 2.69
745 802 7.023575 CCTCCGTTTGAAACTATTCATCAAAG 58.976 38.462 6.49 0.00 44.70 2.77
746 803 7.094805 CCTCCGTTTGAAACTATTCATCAAAGA 60.095 37.037 6.49 0.00 44.70 2.52
747 804 8.160521 TCCGTTTGAAACTATTCATCAAAGAA 57.839 30.769 6.49 0.00 44.70 2.52
748 805 8.625651 TCCGTTTGAAACTATTCATCAAAGAAA 58.374 29.630 6.49 0.00 44.70 2.52
749 806 9.410556 CCGTTTGAAACTATTCATCAAAGAAAT 57.589 29.630 6.49 0.00 44.70 2.17
807 864 8.805175 ACATCCAATTTTATCATCTTTGTGACA 58.195 29.630 0.00 0.00 0.00 3.58
808 865 9.642327 CATCCAATTTTATCATCTTTGTGACAA 57.358 29.630 0.00 0.00 0.00 3.18
809 866 9.865321 ATCCAATTTTATCATCTTTGTGACAAG 57.135 29.630 0.00 0.00 0.00 3.16
810 867 8.859090 TCCAATTTTATCATCTTTGTGACAAGT 58.141 29.630 0.00 0.00 0.00 3.16
817 874 6.480524 TCATCTTTGTGACAAGTAATTCCG 57.519 37.500 0.00 0.00 0.00 4.30
818 875 6.227522 TCATCTTTGTGACAAGTAATTCCGA 58.772 36.000 0.00 0.00 0.00 4.55
819 876 6.708502 TCATCTTTGTGACAAGTAATTCCGAA 59.291 34.615 0.00 0.00 0.00 4.30
820 877 7.390440 TCATCTTTGTGACAAGTAATTCCGAAT 59.610 33.333 0.00 0.00 0.00 3.34
821 878 6.898041 TCTTTGTGACAAGTAATTCCGAATG 58.102 36.000 0.00 0.00 0.00 2.67
822 879 5.621197 TTGTGACAAGTAATTCCGAATGG 57.379 39.130 0.00 0.00 0.00 3.16
823 880 4.900684 TGTGACAAGTAATTCCGAATGGA 58.099 39.130 0.00 0.00 44.61 3.41
837 894 6.996180 TCCGAATGGAGGAAGTAGAATTAT 57.004 37.500 0.00 0.00 40.17 1.28
838 895 7.374975 TCCGAATGGAGGAAGTAGAATTATT 57.625 36.000 0.00 0.00 40.17 1.40
839 896 8.486942 TCCGAATGGAGGAAGTAGAATTATTA 57.513 34.615 0.00 0.00 40.17 0.98
840 897 9.101325 TCCGAATGGAGGAAGTAGAATTATTAT 57.899 33.333 0.00 0.00 40.17 1.28
869 926 4.393239 TGGACCAGGTACAGTAAGTAGT 57.607 45.455 0.00 0.00 32.19 2.73
896 955 0.103208 GCCTCACATCGTCAGGTAGG 59.897 60.000 0.00 0.00 0.00 3.18
984 1056 4.070552 GTCTCCTTCCGCGCACCT 62.071 66.667 8.75 0.00 0.00 4.00
1653 1730 4.586235 GGGCCCGATCCCCATGTG 62.586 72.222 5.69 0.00 42.36 3.21
1704 1781 4.079961 GGGGATGGGGCCAAAGCT 62.080 66.667 4.39 0.00 39.73 3.74
1740 1818 0.106519 AACTGCAGGACAAGCTTGGT 60.107 50.000 29.18 15.37 0.00 3.67
1843 1921 3.006967 GGAGTGCTACAAAGAGGTCTTCA 59.993 47.826 0.00 0.00 34.61 3.02
1845 1923 3.067833 GTGCTACAAAGAGGTCTTCACC 58.932 50.000 0.00 0.00 44.19 4.02
1854 1932 0.546747 AGGTCTTCACCCCGGAATCA 60.547 55.000 0.73 0.00 45.12 2.57
1866 1944 1.279271 CCGGAATCAGAGGTGAGGTTT 59.721 52.381 0.00 0.00 35.66 3.27
1989 2067 2.232941 TCCACTGAGGATTACGGTTGAC 59.767 50.000 0.00 0.00 43.07 3.18
2073 2151 1.077716 GGTGTTTCGGAGGATGGGG 60.078 63.158 0.00 0.00 0.00 4.96
2088 2166 1.887797 TGGGGGAGTATAAGGTGGTG 58.112 55.000 0.00 0.00 0.00 4.17
2137 2215 1.334160 TCGGCATCTCGGGCTTAATA 58.666 50.000 0.00 0.00 0.00 0.98
2138 2216 1.689813 TCGGCATCTCGGGCTTAATAA 59.310 47.619 0.00 0.00 0.00 1.40
2194 2272 1.648467 GGGCGAGCATGGTCTTGTTC 61.648 60.000 21.73 7.18 0.00 3.18
2196 2274 1.970917 GCGAGCATGGTCTTGTTCCG 61.971 60.000 21.73 9.19 0.00 4.30
2326 2404 5.088680 TGCATCGCATTATCATAGGATCA 57.911 39.130 0.00 0.00 32.05 2.92
2342 2420 0.249120 ATCATCGACGGCTTGGTTGA 59.751 50.000 0.00 0.00 34.91 3.18
2380 2458 2.028130 AGGCTCAGGAGTACTTCGATG 58.972 52.381 0.00 0.00 0.00 3.84
2395 2473 3.584733 TCGATGAGATGAGGGAGAAGA 57.415 47.619 0.00 0.00 0.00 2.87
2454 2532 1.437160 GGCATATGTTGGCGTTGGG 59.563 57.895 4.29 0.00 41.53 4.12
2456 2534 1.319614 GCATATGTTGGCGTTGGGGT 61.320 55.000 4.29 0.00 0.00 4.95
2531 2609 5.471456 AGAATGTGGTTTTCAGTGATGAGAC 59.529 40.000 0.00 0.00 0.00 3.36
2541 2619 0.383949 GTGATGAGACGAGGGAGCTC 59.616 60.000 4.71 4.71 0.00 4.09
2686 2764 2.364317 CCAGGGAAGAGAGGGCGA 60.364 66.667 0.00 0.00 0.00 5.54
2688 2766 1.984570 CAGGGAAGAGAGGGCGACA 60.985 63.158 0.00 0.00 0.00 4.35
2727 2805 3.317571 AAGGACGAGGCTGCAGCT 61.318 61.111 35.82 22.72 41.70 4.24
2778 2856 4.023291 TCATTGGCCATAGAAGGAAAACC 58.977 43.478 6.09 0.00 0.00 3.27
2781 2859 2.289565 GGCCATAGAAGGAAAACCGAG 58.710 52.381 0.00 0.00 0.00 4.63
2784 2862 2.289565 CATAGAAGGAAAACCGAGGGC 58.710 52.381 0.00 0.00 0.00 5.19
2790 2868 1.740664 GAAAACCGAGGGCGAGACC 60.741 63.158 0.00 0.00 40.82 3.85
2795 2873 4.856607 CGAGGGCGAGACCGAAGC 62.857 72.222 0.00 0.00 40.62 3.86
2811 2889 2.279517 GCACCCGCATCTACTCCG 60.280 66.667 0.00 0.00 38.36 4.63
2815 2893 0.968901 ACCCGCATCTACTCCGAACA 60.969 55.000 0.00 0.00 0.00 3.18
2820 2898 2.159366 CGCATCTACTCCGAACACTCTT 60.159 50.000 0.00 0.00 0.00 2.85
2823 2901 4.440802 GCATCTACTCCGAACACTCTTGAT 60.441 45.833 0.00 0.00 0.00 2.57
2825 2903 2.086054 ACTCCGAACACTCTTGATGC 57.914 50.000 0.00 0.00 0.00 3.91
2830 2908 0.036388 GAACACTCTTGATGCCGGGA 60.036 55.000 2.18 0.00 0.00 5.14
2898 2976 8.478877 CCTCAAGACACTCCAATAATAAGTACT 58.521 37.037 0.00 0.00 0.00 2.73
2933 3011 2.023673 CGGGCAGGAGCAATTTTGATA 58.976 47.619 0.00 0.00 44.61 2.15
2961 3039 1.547372 GCCATCTTGTCCTGCATTTGT 59.453 47.619 0.00 0.00 0.00 2.83
2968 3046 3.490439 TGTCCTGCATTTGTTCTGAGA 57.510 42.857 0.00 0.00 0.00 3.27
2969 3047 3.405831 TGTCCTGCATTTGTTCTGAGAG 58.594 45.455 0.00 0.00 0.00 3.20
2976 3054 4.637534 TGCATTTGTTCTGAGAGCTAATCC 59.362 41.667 3.36 0.00 0.00 3.01
3017 3108 6.587206 TCTAGGAGCATCAATCTGTATGAG 57.413 41.667 0.00 0.00 36.25 2.90
3078 3170 3.069289 CCGGTTAAGACCTTGTGTAACC 58.931 50.000 0.00 0.00 44.20 2.85
3079 3171 3.494749 CCGGTTAAGACCTTGTGTAACCA 60.495 47.826 10.99 0.00 44.20 3.67
3080 3172 3.495753 CGGTTAAGACCTTGTGTAACCAC 59.504 47.826 10.99 0.00 44.20 4.16
3082 3174 2.249844 AAGACCTTGTGTAACCACGG 57.750 50.000 0.00 0.00 44.92 4.94
3091 3183 1.604755 GTGTAACCACGGTTGATGCAA 59.395 47.619 11.80 0.00 38.92 4.08
3092 3184 2.227865 GTGTAACCACGGTTGATGCAAT 59.772 45.455 11.80 0.00 38.92 3.56
3093 3185 3.437395 GTGTAACCACGGTTGATGCAATA 59.563 43.478 11.80 0.00 38.92 1.90
3094 3186 3.687212 TGTAACCACGGTTGATGCAATAG 59.313 43.478 11.80 0.00 38.92 1.73
3095 3187 2.779755 ACCACGGTTGATGCAATAGA 57.220 45.000 0.00 0.00 0.00 1.98
3117 3209 6.686630 AGAAATAGAGCGATAACCATGAGAG 58.313 40.000 0.00 0.00 0.00 3.20
3118 3210 6.266558 AGAAATAGAGCGATAACCATGAGAGT 59.733 38.462 0.00 0.00 0.00 3.24
3127 3219 6.709643 CGATAACCATGAGAGTTTGATGAAC 58.290 40.000 0.00 0.00 38.58 3.18
3176 3273 7.540400 TGTTCAGCATAATGAAATTGTAAACCG 59.460 33.333 0.00 0.00 40.72 4.44
3183 3280 9.796120 CATAATGAAATTGTAAACCGGTTGTAT 57.204 29.630 23.08 8.07 36.99 2.29
3186 3283 9.549078 AATGAAATTGTAAACCGGTTGTATTTT 57.451 25.926 23.08 16.43 33.44 1.82
3187 3284 8.576936 TGAAATTGTAAACCGGTTGTATTTTC 57.423 30.769 23.08 22.95 0.00 2.29
3188 3285 8.414778 TGAAATTGTAAACCGGTTGTATTTTCT 58.585 29.630 23.08 4.68 0.00 2.52
3189 3286 9.251792 GAAATTGTAAACCGGTTGTATTTTCTT 57.748 29.630 23.08 7.98 0.00 2.52
3190 3287 8.582433 AATTGTAAACCGGTTGTATTTTCTTG 57.418 30.769 23.08 0.00 0.00 3.02
3191 3288 5.521544 TGTAAACCGGTTGTATTTTCTTGC 58.478 37.500 23.08 5.78 0.00 4.01
3192 3289 4.657436 AAACCGGTTGTATTTTCTTGCA 57.343 36.364 23.08 0.00 0.00 4.08
3193 3290 3.915437 ACCGGTTGTATTTTCTTGCAG 57.085 42.857 0.00 0.00 0.00 4.41
3194 3291 3.219281 ACCGGTTGTATTTTCTTGCAGT 58.781 40.909 0.00 0.00 0.00 4.40
3195 3292 3.634910 ACCGGTTGTATTTTCTTGCAGTT 59.365 39.130 0.00 0.00 0.00 3.16
3196 3293 4.098807 ACCGGTTGTATTTTCTTGCAGTTT 59.901 37.500 0.00 0.00 0.00 2.66
3197 3294 5.299782 ACCGGTTGTATTTTCTTGCAGTTTA 59.700 36.000 0.00 0.00 0.00 2.01
3198 3295 6.183360 ACCGGTTGTATTTTCTTGCAGTTTAA 60.183 34.615 0.00 0.00 0.00 1.52
3199 3296 6.143278 CCGGTTGTATTTTCTTGCAGTTTAAC 59.857 38.462 0.00 0.00 0.00 2.01
3200 3297 6.129561 CGGTTGTATTTTCTTGCAGTTTAACG 60.130 38.462 0.00 0.00 0.00 3.18
3201 3298 6.693978 GGTTGTATTTTCTTGCAGTTTAACGT 59.306 34.615 0.00 0.00 0.00 3.99
3202 3299 7.305763 GGTTGTATTTTCTTGCAGTTTAACGTG 60.306 37.037 0.00 0.00 0.00 4.49
3203 3300 6.787225 TGTATTTTCTTGCAGTTTAACGTGT 58.213 32.000 0.00 0.00 0.00 4.49
3204 3301 6.689241 TGTATTTTCTTGCAGTTTAACGTGTG 59.311 34.615 0.00 0.00 0.00 3.82
3205 3302 4.688511 TTTCTTGCAGTTTAACGTGTGT 57.311 36.364 0.00 0.00 0.00 3.72
3206 3303 4.688511 TTCTTGCAGTTTAACGTGTGTT 57.311 36.364 0.00 0.00 42.19 3.32
3207 3304 5.798015 TTCTTGCAGTTTAACGTGTGTTA 57.202 34.783 0.00 0.00 39.54 2.41
3208 3305 5.146482 TCTTGCAGTTTAACGTGTGTTAC 57.854 39.130 0.00 0.00 40.19 2.50
3209 3306 4.630505 TCTTGCAGTTTAACGTGTGTTACA 59.369 37.500 0.00 0.00 40.19 2.41
3210 3307 4.523853 TGCAGTTTAACGTGTGTTACAG 57.476 40.909 0.00 0.00 40.19 2.74
3211 3308 3.242478 TGCAGTTTAACGTGTGTTACAGC 60.242 43.478 0.00 0.00 40.19 4.40
3212 3309 3.528121 CAGTTTAACGTGTGTTACAGCG 58.472 45.455 7.51 7.51 40.19 5.18
3215 3312 3.839823 TTAACGTGTGTTACAGCGTTC 57.160 42.857 23.34 0.00 41.30 3.95
3217 3314 0.179105 ACGTGTGTTACAGCGTTCCA 60.179 50.000 8.64 0.00 34.16 3.53
3250 3348 3.558418 GCAACACCAACTACGAAAGAGAA 59.442 43.478 0.00 0.00 0.00 2.87
3285 3386 9.332502 GAGACTCAGTACTACTATCTGAAATCA 57.667 37.037 0.00 0.00 37.68 2.57
3331 3432 5.682943 TGTTTGCCTTACACAGTATCAAC 57.317 39.130 0.00 0.00 0.00 3.18
3333 3434 5.008217 TGTTTGCCTTACACAGTATCAACAC 59.992 40.000 0.00 0.00 0.00 3.32
3367 3468 7.852945 GCGTATATTGAGGAGAAACAATCAAAG 59.147 37.037 0.00 0.00 37.75 2.77
3376 3477 8.738645 AGGAGAAACAATCAAAGGTATGATAC 57.261 34.615 0.00 0.00 39.08 2.24
3378 3479 8.616076 GGAGAAACAATCAAAGGTATGATACAG 58.384 37.037 4.83 0.00 39.08 2.74
3430 3531 1.517694 GCACAGCCGGCAAATGATG 60.518 57.895 31.54 19.55 0.00 3.07
3601 3702 2.255770 TCTTCTCTTTCCCCTCTCCC 57.744 55.000 0.00 0.00 0.00 4.30
3610 3711 3.917760 CCCTCTCCCGCGTCATCC 61.918 72.222 4.92 0.00 0.00 3.51
3655 3756 6.350445 GCCAAATTGATGTCAGTCTTGGTTAT 60.350 38.462 15.35 0.00 0.00 1.89
3675 3776 1.379443 CACAGTCCCATGGCATGCT 60.379 57.895 22.02 10.90 0.00 3.79
3692 3793 6.867816 TGGCATGCTGAAAATAAAGTACAAAG 59.132 34.615 18.92 0.00 0.00 2.77
3735 3836 5.827797 TGTCAAAATGCCCTCCATTATAGAC 59.172 40.000 0.00 0.00 43.22 2.59
3783 3884 3.438087 TCACAGCTGCTTTCTTTGCTATC 59.562 43.478 15.27 0.00 34.10 2.08
3921 4028 6.466308 TGAACAAATCACAGACTAACATCG 57.534 37.500 0.00 0.00 31.50 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.177608 TGATAGTTCAGTTTTATTGCTATTGCT 57.822 29.630 0.00 0.00 40.48 3.91
12 13 9.956720 ATGATAGTTCAGTTTTATTGCTATTGC 57.043 29.630 0.00 0.00 34.73 3.56
17 18 9.956720 GCATTATGATAGTTCAGTTTTATTGCT 57.043 29.630 0.00 0.00 34.73 3.91
18 19 9.956720 AGCATTATGATAGTTCAGTTTTATTGC 57.043 29.630 0.00 0.00 34.73 3.56
23 24 9.401058 AGCTTAGCATTATGATAGTTCAGTTTT 57.599 29.630 7.07 0.00 34.73 2.43
24 25 8.970859 AGCTTAGCATTATGATAGTTCAGTTT 57.029 30.769 7.07 0.00 34.73 2.66
26 27 9.482627 GTTAGCTTAGCATTATGATAGTTCAGT 57.517 33.333 7.07 0.00 34.73 3.41
27 28 8.642885 CGTTAGCTTAGCATTATGATAGTTCAG 58.357 37.037 7.07 0.00 34.73 3.02
28 29 8.357402 TCGTTAGCTTAGCATTATGATAGTTCA 58.643 33.333 7.07 0.00 36.00 3.18
29 30 8.744008 TCGTTAGCTTAGCATTATGATAGTTC 57.256 34.615 7.07 0.00 0.00 3.01
30 31 8.361139 ACTCGTTAGCTTAGCATTATGATAGTT 58.639 33.333 7.07 0.00 0.00 2.24
31 32 7.810282 CACTCGTTAGCTTAGCATTATGATAGT 59.190 37.037 7.07 0.00 0.00 2.12
32 33 7.274468 CCACTCGTTAGCTTAGCATTATGATAG 59.726 40.741 7.07 0.00 0.00 2.08
33 34 7.090808 CCACTCGTTAGCTTAGCATTATGATA 58.909 38.462 7.07 0.00 0.00 2.15
34 35 5.928839 CCACTCGTTAGCTTAGCATTATGAT 59.071 40.000 7.07 0.00 0.00 2.45
35 36 5.289595 CCACTCGTTAGCTTAGCATTATGA 58.710 41.667 7.07 1.28 0.00 2.15
36 37 4.449068 CCCACTCGTTAGCTTAGCATTATG 59.551 45.833 7.07 0.00 0.00 1.90
37 38 4.101119 ACCCACTCGTTAGCTTAGCATTAT 59.899 41.667 7.07 0.00 0.00 1.28
38 39 3.449737 ACCCACTCGTTAGCTTAGCATTA 59.550 43.478 7.07 0.00 0.00 1.90
39 40 2.236395 ACCCACTCGTTAGCTTAGCATT 59.764 45.455 7.07 0.00 0.00 3.56
40 41 1.831736 ACCCACTCGTTAGCTTAGCAT 59.168 47.619 7.07 0.00 0.00 3.79
41 42 1.203994 GACCCACTCGTTAGCTTAGCA 59.796 52.381 7.07 0.00 0.00 3.49
42 43 1.798079 CGACCCACTCGTTAGCTTAGC 60.798 57.143 0.00 0.00 37.64 3.09
43 44 2.190325 CGACCCACTCGTTAGCTTAG 57.810 55.000 0.00 0.00 37.64 2.18
53 54 0.389948 GTGATGGACACGACCCACTC 60.390 60.000 0.00 0.00 39.78 3.51
54 55 1.671742 GTGATGGACACGACCCACT 59.328 57.895 0.00 0.00 39.78 4.00
55 56 4.278956 GTGATGGACACGACCCAC 57.721 61.111 0.00 0.00 39.78 4.61
62 63 7.903226 TCATTAGGAGAATGATGTGATGGACAC 60.903 40.741 0.00 0.00 39.34 3.67
63 64 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
64 65 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
65 66 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
73 74 7.039152 ACGAGATCACATCATTAGGAGAATGAT 60.039 37.037 6.90 6.90 45.40 2.45
74 75 6.266330 ACGAGATCACATCATTAGGAGAATGA 59.734 38.462 2.66 2.66 40.50 2.57
75 76 6.453943 ACGAGATCACATCATTAGGAGAATG 58.546 40.000 0.00 0.00 0.00 2.67
76 77 6.662865 ACGAGATCACATCATTAGGAGAAT 57.337 37.500 0.00 0.00 0.00 2.40
77 78 6.471233 AACGAGATCACATCATTAGGAGAA 57.529 37.500 0.00 0.00 0.00 2.87
78 79 6.471233 AAACGAGATCACATCATTAGGAGA 57.529 37.500 0.00 0.00 0.00 3.71
79 80 8.084684 TGATAAACGAGATCACATCATTAGGAG 58.915 37.037 0.00 0.00 0.00 3.69
80 81 7.951591 TGATAAACGAGATCACATCATTAGGA 58.048 34.615 0.00 0.00 0.00 2.94
81 82 8.593492 TTGATAAACGAGATCACATCATTAGG 57.407 34.615 0.00 0.00 33.06 2.69
84 85 9.112725 TCATTTGATAAACGAGATCACATCATT 57.887 29.630 0.00 0.00 33.06 2.57
85 86 8.554528 GTCATTTGATAAACGAGATCACATCAT 58.445 33.333 0.00 0.00 33.06 2.45
86 87 7.548780 TGTCATTTGATAAACGAGATCACATCA 59.451 33.333 0.00 0.00 33.06 3.07
87 88 7.909267 TGTCATTTGATAAACGAGATCACATC 58.091 34.615 0.00 0.00 33.06 3.06
88 89 7.848223 TGTCATTTGATAAACGAGATCACAT 57.152 32.000 0.00 0.00 33.06 3.21
89 90 7.172361 TGTTGTCATTTGATAAACGAGATCACA 59.828 33.333 0.00 0.00 33.06 3.58
90 91 7.478667 GTGTTGTCATTTGATAAACGAGATCAC 59.521 37.037 0.00 0.00 33.06 3.06
91 92 7.172361 TGTGTTGTCATTTGATAAACGAGATCA 59.828 33.333 0.00 0.00 0.00 2.92
92 93 7.518161 TGTGTTGTCATTTGATAAACGAGATC 58.482 34.615 0.00 0.00 0.00 2.75
93 94 7.433708 TGTGTTGTCATTTGATAAACGAGAT 57.566 32.000 0.00 0.00 0.00 2.75
94 95 6.852858 TGTGTTGTCATTTGATAAACGAGA 57.147 33.333 0.00 0.00 0.00 4.04
95 96 7.077605 ACATGTGTTGTCATTTGATAAACGAG 58.922 34.615 0.00 0.00 30.89 4.18
96 97 6.964908 ACATGTGTTGTCATTTGATAAACGA 58.035 32.000 0.00 0.00 30.89 3.85
110 111 5.420725 TCCTAAGCATAGACATGTGTTGT 57.579 39.130 1.15 0.00 42.79 3.32
111 112 6.372659 AGTTTCCTAAGCATAGACATGTGTTG 59.627 38.462 1.15 1.90 34.40 3.33
112 113 6.476378 AGTTTCCTAAGCATAGACATGTGTT 58.524 36.000 1.15 0.00 34.40 3.32
113 114 6.054860 AGTTTCCTAAGCATAGACATGTGT 57.945 37.500 1.15 0.22 34.40 3.72
114 115 6.992063 AAGTTTCCTAAGCATAGACATGTG 57.008 37.500 1.15 0.00 34.40 3.21
115 116 7.553044 GGTTAAGTTTCCTAAGCATAGACATGT 59.447 37.037 0.00 0.00 34.40 3.21
116 117 7.552687 TGGTTAAGTTTCCTAAGCATAGACATG 59.447 37.037 0.00 0.00 35.07 3.21
117 118 7.630082 TGGTTAAGTTTCCTAAGCATAGACAT 58.370 34.615 0.00 0.00 0.00 3.06
118 119 7.011499 TGGTTAAGTTTCCTAAGCATAGACA 57.989 36.000 0.00 0.00 0.00 3.41
119 120 8.507524 AATGGTTAAGTTTCCTAAGCATAGAC 57.492 34.615 7.47 0.00 39.90 2.59
120 121 9.528489 AAAATGGTTAAGTTTCCTAAGCATAGA 57.472 29.630 7.47 0.00 39.90 1.98
129 130 8.852135 TCGTTGATAAAAATGGTTAAGTTTCCT 58.148 29.630 0.00 0.00 0.00 3.36
130 131 9.124807 CTCGTTGATAAAAATGGTTAAGTTTCC 57.875 33.333 0.00 0.00 0.00 3.13
131 132 9.887406 TCTCGTTGATAAAAATGGTTAAGTTTC 57.113 29.630 0.00 0.00 0.00 2.78
139 140 9.530633 GTAGACTATCTCGTTGATAAAAATGGT 57.469 33.333 0.00 0.00 37.22 3.55
140 141 9.751542 AGTAGACTATCTCGTTGATAAAAATGG 57.248 33.333 0.00 0.00 37.22 3.16
145 146 9.491675 CCTCTAGTAGACTATCTCGTTGATAAA 57.508 37.037 0.00 0.00 37.22 1.40
146 147 7.603404 GCCTCTAGTAGACTATCTCGTTGATAA 59.397 40.741 0.00 0.00 37.22 1.75
147 148 7.038870 AGCCTCTAGTAGACTATCTCGTTGATA 60.039 40.741 0.00 2.18 36.65 2.15
148 149 5.935789 GCCTCTAGTAGACTATCTCGTTGAT 59.064 44.000 0.00 0.21 39.11 2.57
149 150 5.070714 AGCCTCTAGTAGACTATCTCGTTGA 59.929 44.000 0.00 0.00 0.00 3.18
150 151 5.302360 AGCCTCTAGTAGACTATCTCGTTG 58.698 45.833 0.00 0.00 0.00 4.10
151 152 5.556006 AGCCTCTAGTAGACTATCTCGTT 57.444 43.478 0.00 0.00 0.00 3.85
152 153 5.556006 AAGCCTCTAGTAGACTATCTCGT 57.444 43.478 0.00 0.00 0.00 4.18
153 154 6.694447 AGTAAGCCTCTAGTAGACTATCTCG 58.306 44.000 0.00 0.00 0.00 4.04
154 155 8.255905 CCTAGTAAGCCTCTAGTAGACTATCTC 58.744 44.444 0.00 0.00 34.72 2.75
155 156 7.181485 CCCTAGTAAGCCTCTAGTAGACTATCT 59.819 44.444 0.00 0.00 34.72 1.98
156 157 7.180766 TCCCTAGTAAGCCTCTAGTAGACTATC 59.819 44.444 0.00 0.00 34.72 2.08
157 158 7.024368 TCCCTAGTAAGCCTCTAGTAGACTAT 58.976 42.308 0.00 0.00 34.72 2.12
158 159 6.269769 GTCCCTAGTAAGCCTCTAGTAGACTA 59.730 46.154 0.00 0.00 35.88 2.59
159 160 5.072193 GTCCCTAGTAAGCCTCTAGTAGACT 59.928 48.000 0.00 0.00 35.88 3.24
160 161 5.163216 TGTCCCTAGTAAGCCTCTAGTAGAC 60.163 48.000 0.00 14.07 37.38 2.59
161 162 4.973856 TGTCCCTAGTAAGCCTCTAGTAGA 59.026 45.833 0.00 0.00 34.72 2.59
162 163 5.065235 GTGTCCCTAGTAAGCCTCTAGTAG 58.935 50.000 0.00 0.00 34.72 2.57
163 164 4.476113 TGTGTCCCTAGTAAGCCTCTAGTA 59.524 45.833 0.00 0.00 34.72 1.82
164 165 3.268856 TGTGTCCCTAGTAAGCCTCTAGT 59.731 47.826 0.00 0.00 34.72 2.57
165 166 3.886505 CTGTGTCCCTAGTAAGCCTCTAG 59.113 52.174 0.00 0.00 35.86 2.43
166 167 3.268856 ACTGTGTCCCTAGTAAGCCTCTA 59.731 47.826 0.00 0.00 0.00 2.43
167 168 2.043252 ACTGTGTCCCTAGTAAGCCTCT 59.957 50.000 0.00 0.00 0.00 3.69
168 169 2.166664 CACTGTGTCCCTAGTAAGCCTC 59.833 54.545 0.00 0.00 0.00 4.70
169 170 2.180276 CACTGTGTCCCTAGTAAGCCT 58.820 52.381 0.00 0.00 0.00 4.58
170 171 1.900486 ACACTGTGTCCCTAGTAAGCC 59.100 52.381 7.80 0.00 0.00 4.35
171 172 3.679824 AACACTGTGTCCCTAGTAAGC 57.320 47.619 14.68 0.00 0.00 3.09
172 173 5.365619 ACAAAACACTGTGTCCCTAGTAAG 58.634 41.667 14.68 0.40 0.00 2.34
173 174 5.129815 AGACAAAACACTGTGTCCCTAGTAA 59.870 40.000 14.68 0.00 44.30 2.24
174 175 4.652421 AGACAAAACACTGTGTCCCTAGTA 59.348 41.667 14.68 0.00 44.30 1.82
175 176 3.454812 AGACAAAACACTGTGTCCCTAGT 59.545 43.478 14.68 8.75 44.30 2.57
176 177 4.073293 AGACAAAACACTGTGTCCCTAG 57.927 45.455 14.68 5.70 44.30 3.02
177 178 5.071250 ACATAGACAAAACACTGTGTCCCTA 59.929 40.000 14.68 10.93 44.30 3.53
178 179 4.141482 ACATAGACAAAACACTGTGTCCCT 60.141 41.667 14.68 9.25 44.30 4.20
179 180 4.134563 ACATAGACAAAACACTGTGTCCC 58.865 43.478 14.68 2.36 44.30 4.46
180 181 6.092259 GGATACATAGACAAAACACTGTGTCC 59.908 42.308 14.68 1.97 44.30 4.02
181 182 6.649141 TGGATACATAGACAAAACACTGTGTC 59.351 38.462 14.68 0.98 46.17 3.67
182 183 6.530120 TGGATACATAGACAAAACACTGTGT 58.470 36.000 7.80 7.80 46.17 3.72
200 201 4.970662 AACTTGATGCATGTGTGGATAC 57.029 40.909 2.46 0.00 36.44 2.24
201 202 5.391843 CGAAAACTTGATGCATGTGTGGATA 60.392 40.000 2.46 0.00 36.44 2.59
202 203 4.616604 CGAAAACTTGATGCATGTGTGGAT 60.617 41.667 2.46 0.00 39.30 3.41
203 204 3.304592 CGAAAACTTGATGCATGTGTGGA 60.305 43.478 2.46 0.00 0.00 4.02
204 205 2.981805 CGAAAACTTGATGCATGTGTGG 59.018 45.455 2.46 0.00 0.00 4.17
205 206 2.981805 CCGAAAACTTGATGCATGTGTG 59.018 45.455 2.46 0.00 0.00 3.82
206 207 2.622942 ACCGAAAACTTGATGCATGTGT 59.377 40.909 2.46 0.00 0.00 3.72
207 208 3.287312 ACCGAAAACTTGATGCATGTG 57.713 42.857 2.46 0.00 0.00 3.21
208 209 5.446143 TTAACCGAAAACTTGATGCATGT 57.554 34.783 2.46 0.00 0.00 3.21
209 210 7.026562 TGTATTAACCGAAAACTTGATGCATG 58.973 34.615 2.46 0.00 0.00 4.06
210 211 7.151999 TGTATTAACCGAAAACTTGATGCAT 57.848 32.000 0.00 0.00 0.00 3.96
211 212 6.561737 TGTATTAACCGAAAACTTGATGCA 57.438 33.333 0.00 0.00 0.00 3.96
212 213 8.460831 AATTGTATTAACCGAAAACTTGATGC 57.539 30.769 0.00 0.00 0.00 3.91
213 214 9.840427 AGAATTGTATTAACCGAAAACTTGATG 57.160 29.630 0.00 0.00 0.00 3.07
216 217 9.274065 GCTAGAATTGTATTAACCGAAAACTTG 57.726 33.333 0.00 0.00 0.00 3.16
217 218 9.005777 TGCTAGAATTGTATTAACCGAAAACTT 57.994 29.630 0.00 0.00 0.00 2.66
218 219 8.556213 TGCTAGAATTGTATTAACCGAAAACT 57.444 30.769 0.00 0.00 0.00 2.66
219 220 9.221775 CATGCTAGAATTGTATTAACCGAAAAC 57.778 33.333 0.00 0.00 0.00 2.43
220 221 8.402472 CCATGCTAGAATTGTATTAACCGAAAA 58.598 33.333 0.00 0.00 0.00 2.29
221 222 7.771361 TCCATGCTAGAATTGTATTAACCGAAA 59.229 33.333 0.00 0.00 0.00 3.46
222 223 7.276658 TCCATGCTAGAATTGTATTAACCGAA 58.723 34.615 0.00 0.00 0.00 4.30
223 224 6.822442 TCCATGCTAGAATTGTATTAACCGA 58.178 36.000 0.00 0.00 0.00 4.69
224 225 7.672983 ATCCATGCTAGAATTGTATTAACCG 57.327 36.000 0.00 0.00 0.00 4.44
301 302 3.325135 ACGAAGGAAATATGCCCTAGAGG 59.675 47.826 0.00 0.00 39.47 3.69
302 303 4.608948 ACGAAGGAAATATGCCCTAGAG 57.391 45.455 0.00 0.00 31.36 2.43
303 304 6.681729 ATTACGAAGGAAATATGCCCTAGA 57.318 37.500 0.00 0.00 31.36 2.43
304 305 8.883731 CATTATTACGAAGGAAATATGCCCTAG 58.116 37.037 0.00 0.00 31.36 3.02
305 306 8.380099 ACATTATTACGAAGGAAATATGCCCTA 58.620 33.333 0.00 0.00 31.36 3.53
306 307 7.174946 CACATTATTACGAAGGAAATATGCCCT 59.825 37.037 0.00 0.00 0.00 5.19
307 308 7.305474 CACATTATTACGAAGGAAATATGCCC 58.695 38.462 0.00 0.00 0.00 5.36
308 309 6.801862 GCACATTATTACGAAGGAAATATGCC 59.198 38.462 0.00 0.00 0.00 4.40
309 310 7.359595 TGCACATTATTACGAAGGAAATATGC 58.640 34.615 0.00 0.00 30.65 3.14
310 311 9.897744 AATGCACATTATTACGAAGGAAATATG 57.102 29.630 0.00 0.00 0.00 1.78
312 313 9.729023 CAAATGCACATTATTACGAAGGAAATA 57.271 29.630 0.00 0.00 0.00 1.40
313 314 8.465999 TCAAATGCACATTATTACGAAGGAAAT 58.534 29.630 0.00 0.00 0.00 2.17
314 315 7.821652 TCAAATGCACATTATTACGAAGGAAA 58.178 30.769 0.00 0.00 0.00 3.13
315 316 7.384439 TCAAATGCACATTATTACGAAGGAA 57.616 32.000 0.00 0.00 0.00 3.36
316 317 6.993786 TCAAATGCACATTATTACGAAGGA 57.006 33.333 0.00 0.00 0.00 3.36
328 329 9.917129 CATGTAAACCATATATCAAATGCACAT 57.083 29.630 0.00 0.00 30.71 3.21
374 375 6.936279 TCACAGGTTGGTTCACAAAAATTAA 58.064 32.000 0.00 0.00 41.58 1.40
375 376 6.531503 TCACAGGTTGGTTCACAAAAATTA 57.468 33.333 0.00 0.00 41.58 1.40
376 377 5.413309 TCACAGGTTGGTTCACAAAAATT 57.587 34.783 0.00 0.00 41.58 1.82
384 385 3.156293 CATCCAATCACAGGTTGGTTCA 58.844 45.455 8.75 0.00 45.05 3.18
398 452 2.092753 CACTGTCCTGCTACCATCCAAT 60.093 50.000 0.00 0.00 0.00 3.16
410 465 2.428890 GACTGAGGATACCACTGTCCTG 59.571 54.545 11.68 0.00 44.70 3.86
430 485 2.622452 CCGGGACTTGAACCCTAGTAGA 60.622 54.545 0.00 0.00 44.72 2.59
432 487 1.077663 ACCGGGACTTGAACCCTAGTA 59.922 52.381 6.32 0.00 44.72 1.82
435 490 1.833787 GCACCGGGACTTGAACCCTA 61.834 60.000 6.32 0.00 44.72 3.53
449 504 1.003545 CCAGAAATAATGCGAGCACCG 60.004 52.381 0.00 0.00 42.21 4.94
479 534 3.520290 ACGAACATCGCCAGAAATCTA 57.480 42.857 0.00 0.00 45.12 1.98
480 535 2.386661 ACGAACATCGCCAGAAATCT 57.613 45.000 0.00 0.00 45.12 2.40
481 536 2.415168 TGAACGAACATCGCCAGAAATC 59.585 45.455 0.00 0.00 45.12 2.17
487 542 0.948623 CCACTGAACGAACATCGCCA 60.949 55.000 0.00 0.00 45.12 5.69
495 551 1.537348 CGTCTTGTCCCACTGAACGAA 60.537 52.381 0.00 0.00 0.00 3.85
496 552 0.031585 CGTCTTGTCCCACTGAACGA 59.968 55.000 0.00 0.00 0.00 3.85
498 554 1.865340 GAACGTCTTGTCCCACTGAAC 59.135 52.381 0.00 0.00 0.00 3.18
598 654 1.300963 CACATGCACACCCTAGCCT 59.699 57.895 0.00 0.00 0.00 4.58
612 668 2.170397 TCATCCCTATGAACGCACACAT 59.830 45.455 0.00 0.00 39.20 3.21
712 769 5.750352 AGTTTCAAACGGAGGGAGTAATA 57.250 39.130 0.00 0.00 36.23 0.98
713 770 4.635699 AGTTTCAAACGGAGGGAGTAAT 57.364 40.909 0.00 0.00 36.23 1.89
716 773 4.041198 TGAATAGTTTCAAACGGAGGGAGT 59.959 41.667 0.00 0.00 38.90 3.85
717 774 4.575885 TGAATAGTTTCAAACGGAGGGAG 58.424 43.478 0.00 0.00 38.90 4.30
718 775 4.627284 TGAATAGTTTCAAACGGAGGGA 57.373 40.909 0.00 0.00 38.90 4.20
719 776 4.941263 TGATGAATAGTTTCAAACGGAGGG 59.059 41.667 0.00 0.00 44.70 4.30
720 777 6.494893 TTGATGAATAGTTTCAAACGGAGG 57.505 37.500 0.00 0.00 44.70 4.30
721 778 7.806690 TCTTTGATGAATAGTTTCAAACGGAG 58.193 34.615 0.00 0.00 44.70 4.63
723 780 8.795786 TTTCTTTGATGAATAGTTTCAAACGG 57.204 30.769 0.00 0.00 44.70 4.44
781 838 8.805175 TGTCACAAAGATGATAAAATTGGATGT 58.195 29.630 0.00 0.00 0.00 3.06
782 839 9.642327 TTGTCACAAAGATGATAAAATTGGATG 57.358 29.630 0.00 0.00 28.00 3.51
783 840 9.865321 CTTGTCACAAAGATGATAAAATTGGAT 57.135 29.630 0.00 0.00 30.42 3.41
784 841 8.859090 ACTTGTCACAAAGATGATAAAATTGGA 58.141 29.630 0.00 0.00 30.42 3.53
791 848 8.664798 CGGAATTACTTGTCACAAAGATGATAA 58.335 33.333 0.00 0.00 0.00 1.75
792 849 8.038351 TCGGAATTACTTGTCACAAAGATGATA 58.962 33.333 0.00 0.00 0.00 2.15
793 850 6.878923 TCGGAATTACTTGTCACAAAGATGAT 59.121 34.615 0.00 0.00 0.00 2.45
794 851 6.227522 TCGGAATTACTTGTCACAAAGATGA 58.772 36.000 0.00 0.00 0.00 2.92
795 852 6.480524 TCGGAATTACTTGTCACAAAGATG 57.519 37.500 0.00 0.00 0.00 2.90
796 853 7.362056 CCATTCGGAATTACTTGTCACAAAGAT 60.362 37.037 0.00 0.00 0.00 2.40
797 854 6.072728 CCATTCGGAATTACTTGTCACAAAGA 60.073 38.462 0.00 0.00 0.00 2.52
798 855 6.072728 TCCATTCGGAATTACTTGTCACAAAG 60.073 38.462 0.00 0.00 38.83 2.77
799 856 5.765677 TCCATTCGGAATTACTTGTCACAAA 59.234 36.000 0.00 0.00 38.83 2.83
800 857 5.309638 TCCATTCGGAATTACTTGTCACAA 58.690 37.500 0.00 0.00 38.83 3.33
801 858 4.900684 TCCATTCGGAATTACTTGTCACA 58.099 39.130 0.00 0.00 38.83 3.58
802 859 4.332819 CCTCCATTCGGAATTACTTGTCAC 59.667 45.833 0.00 0.00 42.21 3.67
803 860 4.224147 TCCTCCATTCGGAATTACTTGTCA 59.776 41.667 0.00 0.00 42.21 3.58
804 861 4.766375 TCCTCCATTCGGAATTACTTGTC 58.234 43.478 0.00 0.00 42.21 3.18
805 862 4.837093 TCCTCCATTCGGAATTACTTGT 57.163 40.909 0.00 0.00 42.21 3.16
806 863 5.186198 ACTTCCTCCATTCGGAATTACTTG 58.814 41.667 0.00 0.00 42.21 3.16
807 864 5.437191 ACTTCCTCCATTCGGAATTACTT 57.563 39.130 0.00 0.00 42.21 2.24
808 865 5.897824 TCTACTTCCTCCATTCGGAATTACT 59.102 40.000 0.00 0.00 42.21 2.24
809 866 6.158023 TCTACTTCCTCCATTCGGAATTAC 57.842 41.667 0.00 0.00 42.21 1.89
810 867 6.801718 TTCTACTTCCTCCATTCGGAATTA 57.198 37.500 0.00 0.00 42.21 1.40
811 868 5.693769 TTCTACTTCCTCCATTCGGAATT 57.306 39.130 0.00 0.00 42.21 2.17
812 869 5.896073 ATTCTACTTCCTCCATTCGGAAT 57.104 39.130 0.00 0.00 42.21 3.01
813 870 5.693769 AATTCTACTTCCTCCATTCGGAA 57.306 39.130 0.00 0.00 42.21 4.30
814 871 6.996180 ATAATTCTACTTCCTCCATTCGGA 57.004 37.500 0.00 0.00 39.79 4.55
831 888 9.911788 ACCTGGTCCATGATGATATAATAATTC 57.088 33.333 0.54 0.00 0.00 2.17
834 891 9.332713 TGTACCTGGTCCATGATGATATAATAA 57.667 33.333 0.63 0.00 0.00 1.40
835 892 8.909423 TGTACCTGGTCCATGATGATATAATA 57.091 34.615 0.63 0.00 0.00 0.98
836 893 7.459125 ACTGTACCTGGTCCATGATGATATAAT 59.541 37.037 0.63 0.00 0.00 1.28
837 894 6.787458 ACTGTACCTGGTCCATGATGATATAA 59.213 38.462 0.63 0.00 0.00 0.98
838 895 6.322931 ACTGTACCTGGTCCATGATGATATA 58.677 40.000 0.63 0.00 0.00 0.86
839 896 5.158141 ACTGTACCTGGTCCATGATGATAT 58.842 41.667 0.63 0.00 0.00 1.63
840 897 4.556697 ACTGTACCTGGTCCATGATGATA 58.443 43.478 0.63 0.00 0.00 2.15
841 898 3.387962 ACTGTACCTGGTCCATGATGAT 58.612 45.455 0.63 0.00 0.00 2.45
842 899 2.832838 ACTGTACCTGGTCCATGATGA 58.167 47.619 0.63 0.00 0.00 2.92
843 900 4.162320 ACTTACTGTACCTGGTCCATGATG 59.838 45.833 0.63 0.00 0.00 3.07
855 912 4.318689 GCTCGATCGACTACTTACTGTACC 60.319 50.000 15.15 0.00 0.00 3.34
869 926 1.095807 ACGATGTGAGGCTCGATCGA 61.096 55.000 35.89 18.32 40.06 3.59
1249 1326 4.410400 GTTGAGGTCGGGGGCCTG 62.410 72.222 0.84 0.00 38.01 4.85
1252 1329 4.452733 CTCGTTGAGGTCGGGGGC 62.453 72.222 0.00 0.00 0.00 5.80
1253 1330 3.771160 CCTCGTTGAGGTCGGGGG 61.771 72.222 4.65 0.00 44.25 5.40
1611 1688 3.531207 CCGGAGGCGAGCATCTCA 61.531 66.667 9.60 0.00 46.14 3.27
1671 1748 3.361977 CCGGCTTCCACAAACCCG 61.362 66.667 0.00 0.00 38.71 5.28
1704 1781 0.819259 GTTCTTGGTGCAGCTCCACA 60.819 55.000 16.00 3.05 37.46 4.17
1843 1921 0.978146 CTCACCTCTGATTCCGGGGT 60.978 60.000 0.00 0.00 0.00 4.95
1845 1923 0.978146 ACCTCACCTCTGATTCCGGG 60.978 60.000 0.00 0.00 0.00 5.73
1854 1932 1.481056 CGGTCCCAAACCTCACCTCT 61.481 60.000 0.00 0.00 46.87 3.69
1866 1944 3.157881 CTCATTATAGCTCTCGGTCCCA 58.842 50.000 0.00 0.00 0.00 4.37
1953 2031 3.866582 GGAGGGTCATGCTCCCCG 61.867 72.222 18.09 0.00 46.17 5.73
1989 2067 0.664466 TCACGCTGAAGCTTCTCACG 60.664 55.000 26.09 25.25 39.32 4.35
2061 2139 1.463531 TATACTCCCCCATCCTCCGA 58.536 55.000 0.00 0.00 0.00 4.55
2073 2151 0.106149 CCGGCACCACCTTATACTCC 59.894 60.000 0.00 0.00 35.61 3.85
2088 2166 0.249868 TGTATGCTGCTACATCCGGC 60.250 55.000 0.00 0.00 35.17 6.13
2137 2215 1.220206 CTGCCTCATCGACCAGCTT 59.780 57.895 0.00 0.00 0.00 3.74
2138 2216 1.674764 CTCTGCCTCATCGACCAGCT 61.675 60.000 0.00 0.00 0.00 4.24
2194 2272 0.826715 ACACATGTCTCCTCATCCGG 59.173 55.000 0.00 0.00 0.00 5.14
2196 2274 1.209019 AGCACACATGTCTCCTCATCC 59.791 52.381 0.00 0.00 0.00 3.51
2326 2404 1.821216 AAATCAACCAAGCCGTCGAT 58.179 45.000 0.00 0.00 0.00 3.59
2380 2458 5.588246 GGTGAATTTTCTTCTCCCTCATCTC 59.412 44.000 0.00 0.00 0.00 2.75
2395 2473 3.488778 TGCAATGCTTGGGTGAATTTT 57.511 38.095 6.82 0.00 0.00 1.82
2439 2517 0.329931 TCACCCCAACGCCAACATAT 59.670 50.000 0.00 0.00 0.00 1.78
2454 2532 1.086696 CATCATCCAACCGTGTCACC 58.913 55.000 0.00 0.00 0.00 4.02
2456 2534 0.036022 TGCATCATCCAACCGTGTCA 59.964 50.000 0.00 0.00 0.00 3.58
2531 2609 2.430610 CCTTCCAGGAGCTCCCTCG 61.431 68.421 29.54 17.50 45.60 4.63
2686 2764 2.204059 AGCCTCTGCCCTCCTTGT 60.204 61.111 0.00 0.00 38.69 3.16
2754 2832 5.452356 GGTTTTCCTTCTATGGCCAATGATG 60.452 44.000 10.96 12.86 36.94 3.07
2778 2856 4.856607 GCTTCGGTCTCGCCCTCG 62.857 72.222 0.00 0.00 36.13 4.63
2790 2868 0.872021 GAGTAGATGCGGGTGCTTCG 60.872 60.000 0.00 0.00 46.74 3.79
2792 2870 1.522569 GGAGTAGATGCGGGTGCTT 59.477 57.895 0.00 0.00 43.34 3.91
2795 2873 0.527817 GTTCGGAGTAGATGCGGGTG 60.528 60.000 0.00 0.00 43.91 4.61
2799 2877 1.402259 AGAGTGTTCGGAGTAGATGCG 59.598 52.381 0.00 0.00 45.34 4.73
2811 2889 0.036388 TCCCGGCATCAAGAGTGTTC 60.036 55.000 0.00 0.00 0.00 3.18
2815 2893 1.139853 GAGAATCCCGGCATCAAGAGT 59.860 52.381 0.00 0.00 0.00 3.24
2820 2898 1.146930 GCTGAGAATCCCGGCATCA 59.853 57.895 0.00 0.00 0.00 3.07
2823 2901 2.586245 CTGCTGAGAATCCCGGCA 59.414 61.111 0.00 0.00 34.20 5.69
2825 2903 2.203126 GCCTGCTGAGAATCCCGG 60.203 66.667 0.00 0.00 0.00 5.73
2830 2908 1.379576 GGCCAAGCCTGCTGAGAAT 60.380 57.895 0.00 0.00 46.69 2.40
2898 2976 1.314730 GCCCGTCTCCTTTTGTTTCA 58.685 50.000 0.00 0.00 0.00 2.69
2913 2991 0.819582 ATCAAAATTGCTCCTGCCCG 59.180 50.000 0.00 0.00 38.71 6.13
2933 3011 0.106819 GGACAAGATGGCTCATGGCT 60.107 55.000 6.20 0.00 41.46 4.75
2961 3039 4.767578 AATGCAGGATTAGCTCTCAGAA 57.232 40.909 0.00 0.00 0.00 3.02
2968 3046 4.449068 CGATACGAAAATGCAGGATTAGCT 59.551 41.667 0.00 0.00 0.00 3.32
2969 3047 4.447724 TCGATACGAAAATGCAGGATTAGC 59.552 41.667 0.00 0.00 31.06 3.09
2976 3054 5.920840 TCCTAGAATCGATACGAAAATGCAG 59.079 40.000 0.00 0.00 39.99 4.41
3017 3108 4.212214 CGAAACCTTTATAGCCATCAGAGC 59.788 45.833 0.00 0.00 0.00 4.09
3078 3170 6.603237 TCTATTTCTATTGCATCAACCGTG 57.397 37.500 0.00 0.00 0.00 4.94
3079 3171 5.237344 GCTCTATTTCTATTGCATCAACCGT 59.763 40.000 0.00 0.00 0.00 4.83
3080 3172 5.613360 CGCTCTATTTCTATTGCATCAACCG 60.613 44.000 0.00 0.00 0.00 4.44
3082 3174 6.530913 TCGCTCTATTTCTATTGCATCAAC 57.469 37.500 0.00 0.00 0.00 3.18
3091 3183 8.354711 TCTCATGGTTATCGCTCTATTTCTAT 57.645 34.615 0.00 0.00 0.00 1.98
3092 3184 7.448777 ACTCTCATGGTTATCGCTCTATTTCTA 59.551 37.037 0.00 0.00 0.00 2.10
3093 3185 6.266558 ACTCTCATGGTTATCGCTCTATTTCT 59.733 38.462 0.00 0.00 0.00 2.52
3094 3186 6.451393 ACTCTCATGGTTATCGCTCTATTTC 58.549 40.000 0.00 0.00 0.00 2.17
3095 3187 6.412362 ACTCTCATGGTTATCGCTCTATTT 57.588 37.500 0.00 0.00 0.00 1.40
3157 3254 9.796120 ATACAACCGGTTTACAATTTCATTATG 57.204 29.630 19.55 3.40 0.00 1.90
3176 3273 6.693978 ACGTTAAACTGCAAGAAAATACAACC 59.306 34.615 0.00 0.00 37.43 3.77
3183 3280 5.049398 ACACACGTTAAACTGCAAGAAAA 57.951 34.783 0.00 0.00 37.43 2.29
3184 3281 4.688511 ACACACGTTAAACTGCAAGAAA 57.311 36.364 0.00 0.00 37.43 2.52
3185 3282 4.688511 AACACACGTTAAACTGCAAGAA 57.311 36.364 0.00 0.00 32.81 2.52
3186 3283 4.630505 TGTAACACACGTTAAACTGCAAGA 59.369 37.500 0.00 0.00 39.29 3.02
3187 3284 4.899516 TGTAACACACGTTAAACTGCAAG 58.100 39.130 0.00 0.00 39.29 4.01
3188 3285 4.728307 GCTGTAACACACGTTAAACTGCAA 60.728 41.667 0.00 0.00 39.29 4.08
3189 3286 3.242478 GCTGTAACACACGTTAAACTGCA 60.242 43.478 0.00 0.00 39.29 4.41
3190 3287 3.285745 GCTGTAACACACGTTAAACTGC 58.714 45.455 0.00 0.00 39.29 4.40
3191 3288 3.000523 ACGCTGTAACACACGTTAAACTG 59.999 43.478 0.00 0.00 39.29 3.16
3192 3289 3.189285 ACGCTGTAACACACGTTAAACT 58.811 40.909 0.00 0.00 39.29 2.66
3193 3290 3.574216 ACGCTGTAACACACGTTAAAC 57.426 42.857 0.00 0.00 39.29 2.01
3194 3291 3.001127 GGAACGCTGTAACACACGTTAAA 59.999 43.478 14.50 0.00 41.80 1.52
3195 3292 2.539274 GGAACGCTGTAACACACGTTAA 59.461 45.455 14.50 0.00 41.80 2.01
3196 3293 2.126467 GGAACGCTGTAACACACGTTA 58.874 47.619 14.50 0.00 41.80 3.18
3197 3294 0.932399 GGAACGCTGTAACACACGTT 59.068 50.000 14.45 14.45 43.15 3.99
3198 3295 0.179105 TGGAACGCTGTAACACACGT 60.179 50.000 0.00 0.00 37.41 4.49
3199 3296 0.506932 CTGGAACGCTGTAACACACG 59.493 55.000 0.00 0.00 0.00 4.49
3200 3297 0.865769 CCTGGAACGCTGTAACACAC 59.134 55.000 0.00 0.00 0.00 3.82
3201 3298 0.882927 GCCTGGAACGCTGTAACACA 60.883 55.000 0.00 0.00 0.00 3.72
3202 3299 0.602905 AGCCTGGAACGCTGTAACAC 60.603 55.000 0.00 0.00 34.56 3.32
3203 3300 0.602638 CAGCCTGGAACGCTGTAACA 60.603 55.000 0.00 0.00 46.97 2.41
3204 3301 2.162716 CAGCCTGGAACGCTGTAAC 58.837 57.895 0.00 0.00 46.97 2.50
3205 3302 4.693532 CAGCCTGGAACGCTGTAA 57.306 55.556 0.00 0.00 46.97 2.41
3215 3312 1.529010 TGTTGCAGTTCCAGCCTGG 60.529 57.895 3.69 3.69 39.43 4.45
3217 3314 1.529244 GGTGTTGCAGTTCCAGCCT 60.529 57.895 0.00 0.00 0.00 4.58
3235 3332 6.420903 TCACATTCTGTTCTCTTTCGTAGTTG 59.579 38.462 0.00 0.00 0.00 3.16
3250 3348 6.242396 AGTAGTACTGAGTCTCACATTCTGT 58.758 40.000 5.39 0.00 0.00 3.41
3302 3403 6.160576 ACTGTGTAAGGCAAACATTTTCAT 57.839 33.333 0.00 0.00 0.00 2.57
3331 3432 3.184379 CCTCAATATACGCGTGGATTGTG 59.816 47.826 30.55 28.44 32.33 3.33
3333 3434 3.649073 TCCTCAATATACGCGTGGATTG 58.351 45.455 28.34 28.34 0.00 2.67
3378 3479 1.959042 TTCAGCAGCTAAGCTATGGC 58.041 50.000 0.00 0.00 44.54 4.40
3430 3531 0.604578 TTCAGAGGCCAAAATGCAGC 59.395 50.000 5.01 0.00 0.00 5.25
3601 3702 2.355126 CAGATCCCGGATGACGCG 60.355 66.667 4.08 3.53 42.52 6.01
3610 3711 1.656652 CCTTACACTTGCAGATCCCG 58.343 55.000 0.00 0.00 0.00 5.14
3655 3756 1.303948 CATGCCATGGGACTGTGGA 59.696 57.895 15.13 0.00 37.06 4.02
3675 3776 7.575414 TGAGGTGCTTTGTACTTTATTTTCA 57.425 32.000 0.00 0.00 0.00 2.69
3692 3793 2.035066 ACAGAAGCAATGTTTGAGGTGC 59.965 45.455 0.00 0.00 37.26 5.01
3783 3884 1.334869 ACTGAAAACGCTTTGAGGCTG 59.665 47.619 2.90 0.00 30.70 4.85
3824 3925 5.867903 ATGTGTTTGTTCATTTTCCCTCA 57.132 34.783 0.00 0.00 0.00 3.86
3898 4005 5.989168 ACGATGTTAGTCTGTGATTTGTTCA 59.011 36.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.