Multiple sequence alignment - TraesCS1B01G368600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G368600 chr1B 100.000 5422 0 0 1 5422 598905638 598900217 0.000000e+00 10013.0
1 TraesCS1B01G368600 chr1B 87.264 212 18 4 5220 5422 547693752 547693541 3.270000e-57 233.0
2 TraesCS1B01G368600 chr1A 95.399 4738 162 25 1 4717 536934651 536939353 0.000000e+00 7491.0
3 TraesCS1B01G368600 chr1A 88.205 195 20 2 5220 5414 574238944 574239135 4.220000e-56 230.0
4 TraesCS1B01G368600 chr1A 89.855 138 12 2 4672 4809 536939352 536939487 5.580000e-40 176.0
5 TraesCS1B01G368600 chr1A 86.301 146 15 2 5081 5225 536954860 536955001 2.620000e-33 154.0
6 TraesCS1B01G368600 chr1D 96.318 4563 129 16 1 4548 441080306 441075768 0.000000e+00 7459.0
7 TraesCS1B01G368600 chr1D 91.950 323 25 1 4904 5225 441075458 441075136 8.280000e-123 451.0
8 TraesCS1B01G368600 chr1D 91.085 258 13 6 4546 4801 441075714 441075465 1.870000e-89 340.0
9 TraesCS1B01G368600 chr1D 88.649 185 17 3 5220 5401 21617637 21617820 7.070000e-54 222.0
10 TraesCS1B01G368600 chr1D 95.349 43 1 1 4729 4771 441075495 441075454 3.500000e-07 67.6
11 TraesCS1B01G368600 chrUn 98.492 398 6 0 3016 3413 478968816 478968419 0.000000e+00 702.0
12 TraesCS1B01G368600 chr3D 95.074 203 10 0 5220 5422 379592516 379592314 2.440000e-83 320.0
13 TraesCS1B01G368600 chr5B 92.118 203 16 0 5220 5422 262806307 262806509 2.470000e-73 287.0
14 TraesCS1B01G368600 chr6A 76.307 574 113 21 1963 2525 187739319 187739880 8.890000e-73 285.0
15 TraesCS1B01G368600 chr7B 92.821 195 14 0 5220 5414 536984537 536984343 3.200000e-72 283.0
16 TraesCS1B01G368600 chr7B 90.050 201 20 0 5220 5420 91500832 91500632 1.500000e-65 261.0
17 TraesCS1B01G368600 chr6B 76.132 574 114 21 1963 2525 248354546 248355107 4.140000e-71 279.0
18 TraesCS1B01G368600 chr6D 76.000 575 113 23 1963 2525 142747621 142748182 1.920000e-69 274.0
19 TraesCS1B01G368600 chr2B 93.333 180 12 0 5220 5399 182725695 182725516 3.220000e-67 267.0
20 TraesCS1B01G368600 chr4A 89.231 195 21 0 5220 5414 716719787 716719981 1.510000e-60 244.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G368600 chr1B 598900217 598905638 5421 True 10013.0 10013 100.0000 1 5422 1 chr1B.!!$R2 5421
1 TraesCS1B01G368600 chr1A 536934651 536939487 4836 False 3833.5 7491 92.6270 1 4809 2 chr1A.!!$F3 4808
2 TraesCS1B01G368600 chr1D 441075136 441080306 5170 True 2079.4 7459 93.6755 1 5225 4 chr1D.!!$R1 5224
3 TraesCS1B01G368600 chr6A 187739319 187739880 561 False 285.0 285 76.3070 1963 2525 1 chr6A.!!$F1 562
4 TraesCS1B01G368600 chr6B 248354546 248355107 561 False 279.0 279 76.1320 1963 2525 1 chr6B.!!$F1 562
5 TraesCS1B01G368600 chr6D 142747621 142748182 561 False 274.0 274 76.0000 1963 2525 1 chr6D.!!$F1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 392 0.107654 GTAGAGAAGGCGCCCAACAT 60.108 55.000 26.15 9.78 0.0 2.71 F
530 535 0.471780 TCTGGCAGTTGAGGTGGAGA 60.472 55.000 15.27 0.00 0.0 3.71 F
997 1003 1.546476 CAAGGTGCTCGTCTCTAACCT 59.454 52.381 0.00 0.00 43.1 3.50 F
2585 2596 2.693591 TCAGGAGCCATAGGTAAGAACG 59.306 50.000 0.00 0.00 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 1517 3.507622 CCAGAGAAAACCATCCTTGAACC 59.492 47.826 0.0 0.0 0.00 3.62 R
1880 1888 5.527582 AGTTCCTGTGTTCTGTCAAATGTAC 59.472 40.000 0.0 0.0 0.00 2.90 R
2809 2822 2.307098 AGAAGATTGCCAGCTTACCTGT 59.693 45.455 0.0 0.0 40.06 4.00 R
4443 4466 0.038744 ACTTGAACCTGGATGGGCTG 59.961 55.000 0.0 0.0 41.11 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 1.215173 TCGTTATTCCTCCCCTCCGTA 59.785 52.381 0.00 0.00 0.00 4.02
125 126 4.687215 GCACAGCCTCCGCAGTCA 62.687 66.667 0.00 0.00 37.52 3.41
152 153 2.452813 CGTGGTGAGATTTCGCGGG 61.453 63.158 6.13 0.00 34.60 6.13
287 288 7.081349 TCTTAAAATTAACATCTGCGTTGTGG 58.919 34.615 0.00 0.00 0.00 4.17
383 384 1.668101 AAGGGAGCGTAGAGAAGGCG 61.668 60.000 0.00 0.00 43.83 5.52
391 392 0.107654 GTAGAGAAGGCGCCCAACAT 60.108 55.000 26.15 9.78 0.00 2.71
411 412 7.093988 CCAACATGTCCAGGATATCTAGTCTAG 60.094 44.444 0.00 0.00 0.00 2.43
413 414 6.275855 ACATGTCCAGGATATCTAGTCTAGGA 59.724 42.308 7.05 0.00 0.00 2.94
461 462 3.742369 CAGCAATGGCACGAAAAGAAAAT 59.258 39.130 0.00 0.00 44.61 1.82
466 467 4.173036 TGGCACGAAAAGAAAATCATCC 57.827 40.909 0.00 0.00 0.00 3.51
517 522 9.747898 TTTATATAAGGAGAAGTTTTTCTGGCA 57.252 29.630 0.00 0.00 43.63 4.92
530 535 0.471780 TCTGGCAGTTGAGGTGGAGA 60.472 55.000 15.27 0.00 0.00 3.71
538 543 2.896685 AGTTGAGGTGGAGAAGAGACTG 59.103 50.000 0.00 0.00 0.00 3.51
579 584 1.886886 TGATCATCCATGCCATGTCG 58.113 50.000 3.63 0.00 0.00 4.35
584 589 2.019249 CATCCATGCCATGTCGAAACT 58.981 47.619 3.63 0.00 0.00 2.66
596 602 2.035449 TGTCGAAACTTGTCCATCGTCT 59.965 45.455 0.00 0.00 36.70 4.18
629 635 5.125578 CCTATTTTTAGAAGCCTTTCGCCTT 59.874 40.000 0.00 0.00 38.38 4.35
769 775 2.424302 CCAAACCCACTCCGTCGT 59.576 61.111 0.00 0.00 0.00 4.34
872 878 2.098117 GCTTGCGCCTCTGTGATTATTT 59.902 45.455 4.18 0.00 0.00 1.40
919 925 6.315642 ACACAGATTTGTCTATCTTGCATCTG 59.684 38.462 0.00 0.00 41.24 2.90
979 985 3.803231 GTGAAATTTGTGTGATGCAGCAA 59.197 39.130 6.05 0.00 0.00 3.91
997 1003 1.546476 CAAGGTGCTCGTCTCTAACCT 59.454 52.381 0.00 0.00 43.10 3.50
1110 1116 3.194329 TGACTCTGAGTGGTAAGCATCTG 59.806 47.826 16.28 0.00 0.00 2.90
1240 1247 4.526970 CCTACATTATGGTTTGTCTGCCT 58.473 43.478 0.00 0.00 0.00 4.75
1486 1493 2.922503 TTCGCTGACAGGGGCTCA 60.923 61.111 18.48 0.00 0.00 4.26
1510 1517 5.655488 ACTTATCAAGTGAATGGACGAGAG 58.345 41.667 0.00 0.00 41.01 3.20
1800 1808 9.901172 TTTAGGTTCTGTTTTTAGTTCTTCTCT 57.099 29.630 0.00 0.00 0.00 3.10
1880 1888 4.212004 TCAGAATGTTTTGTCTCGCTCAAG 59.788 41.667 0.00 0.00 37.40 3.02
2197 2208 5.241506 TGCATTCTTAAAAAGTCTCAGTGGG 59.758 40.000 0.00 0.00 0.00 4.61
2455 2466 3.644335 TGGATTTGCCAATGATGATCCA 58.356 40.909 4.09 4.09 45.87 3.41
2585 2596 2.693591 TCAGGAGCCATAGGTAAGAACG 59.306 50.000 0.00 0.00 0.00 3.95
2700 2711 4.546829 ACCCGTACAATTTAGCTCTTCA 57.453 40.909 0.00 0.00 0.00 3.02
2905 2918 0.908198 GATCCCTCCACTCAAGCAGT 59.092 55.000 0.00 0.00 34.67 4.40
3115 3128 0.032540 GCAGCCACAACTTTCTTGGG 59.967 55.000 0.00 0.00 0.00 4.12
3125 3138 5.523552 CACAACTTTCTTGGGAAAAATGACC 59.476 40.000 0.00 0.00 40.41 4.02
3167 3180 1.439679 AGTCGGGCATTTTCTCGTTC 58.560 50.000 0.00 0.00 0.00 3.95
3182 3195 4.452825 TCTCGTTCGATCTCTTATGGAGT 58.547 43.478 0.00 0.00 42.40 3.85
3296 3309 1.675641 GTTCACCGGAGCAGCCAAT 60.676 57.895 9.46 0.00 35.94 3.16
3453 3466 7.122048 AGAGGTAGACAGCATATATAGCATCA 58.878 38.462 9.01 0.00 0.00 3.07
3454 3467 7.617329 AGAGGTAGACAGCATATATAGCATCAA 59.383 37.037 9.01 0.00 0.00 2.57
3769 3785 2.564947 AGCCTTCGGTGGATGAGATATC 59.435 50.000 0.00 0.00 0.00 1.63
3972 3988 3.047718 GAGATCGCCACGGACACGA 62.048 63.158 0.00 0.00 44.60 4.35
4117 4139 8.669946 TTCCTGACGCACAATGAAATATATAA 57.330 30.769 0.00 0.00 0.00 0.98
4174 4197 2.432444 CCCATGCTCCAACTACGAAAA 58.568 47.619 0.00 0.00 0.00 2.29
4175 4198 2.161609 CCCATGCTCCAACTACGAAAAC 59.838 50.000 0.00 0.00 0.00 2.43
4179 4202 3.799366 TGCTCCAACTACGAAAACAAGA 58.201 40.909 0.00 0.00 0.00 3.02
4198 4221 2.761208 AGAACCTTCCCTACACGATCAG 59.239 50.000 0.00 0.00 0.00 2.90
4233 4256 2.270205 GCTTGCTCCAGCTGGCTA 59.730 61.111 28.91 11.22 42.66 3.93
4247 4270 0.901114 TGGCTAACAGTGGCTCGGTA 60.901 55.000 0.00 0.00 0.00 4.02
4435 4458 8.472683 CTAGATGACTAGGTTTCTTTCTTGTG 57.527 38.462 0.00 0.00 41.51 3.33
4436 4459 6.234177 AGATGACTAGGTTTCTTTCTTGTGG 58.766 40.000 0.00 0.00 0.00 4.17
4437 4460 5.367945 TGACTAGGTTTCTTTCTTGTGGT 57.632 39.130 0.00 0.00 0.00 4.16
4438 4461 5.123227 TGACTAGGTTTCTTTCTTGTGGTG 58.877 41.667 0.00 0.00 0.00 4.17
4439 4462 4.461198 ACTAGGTTTCTTTCTTGTGGTGG 58.539 43.478 0.00 0.00 0.00 4.61
4440 4463 3.662759 AGGTTTCTTTCTTGTGGTGGA 57.337 42.857 0.00 0.00 0.00 4.02
4441 4464 3.976015 AGGTTTCTTTCTTGTGGTGGAA 58.024 40.909 0.00 0.00 0.00 3.53
4442 4465 3.699538 AGGTTTCTTTCTTGTGGTGGAAC 59.300 43.478 0.00 0.00 0.00 3.62
4502 4541 2.354103 GCTCTCATAGAAGGTGTGTGCA 60.354 50.000 0.00 0.00 32.80 4.57
4541 4580 4.286910 GCGTCTGCATTGTGTTTCTAAAA 58.713 39.130 0.00 0.00 42.15 1.52
4588 4689 4.815553 CGAGATTCGCTAAGTTCATTGTG 58.184 43.478 0.00 0.00 31.14 3.33
4589 4690 4.582459 GAGATTCGCTAAGTTCATTGTGC 58.418 43.478 0.00 0.00 0.00 4.57
4677 4826 5.607477 ACTGAGTATTCGGACAAAGTTTGA 58.393 37.500 22.23 0.00 33.69 2.69
4688 4837 7.763356 TCGGACAAAGTTTGATTTTAAAGTGA 58.237 30.769 22.23 2.83 0.00 3.41
4726 4875 1.376037 GCAAGGTAGGCGTTCTGCT 60.376 57.895 0.00 0.00 45.43 4.24
4784 4933 7.492524 TGCAAATTAAATGCCGGTTTCATATA 58.507 30.769 1.90 0.00 43.16 0.86
4810 4959 9.965902 AAGATAGATGGAGAAAACACAAATACT 57.034 29.630 0.00 0.00 0.00 2.12
4811 4960 9.606631 AGATAGATGGAGAAAACACAAATACTC 57.393 33.333 0.00 0.00 0.00 2.59
4812 4961 8.738645 ATAGATGGAGAAAACACAAATACTCC 57.261 34.615 0.00 0.00 42.64 3.85
4814 4963 5.319043 TGGAGAAAACACAAATACTCCCT 57.681 39.130 0.00 0.00 41.93 4.20
4815 4964 5.313712 TGGAGAAAACACAAATACTCCCTC 58.686 41.667 0.00 0.00 41.93 4.30
4816 4965 5.073144 TGGAGAAAACACAAATACTCCCTCT 59.927 40.000 0.00 0.00 41.93 3.69
4817 4966 5.412904 GGAGAAAACACAAATACTCCCTCTG 59.587 44.000 0.00 0.00 38.23 3.35
4818 4967 5.941788 AGAAAACACAAATACTCCCTCTGT 58.058 37.500 0.00 0.00 0.00 3.41
4819 4968 5.998363 AGAAAACACAAATACTCCCTCTGTC 59.002 40.000 0.00 0.00 0.00 3.51
4820 4969 3.983044 ACACAAATACTCCCTCTGTCC 57.017 47.619 0.00 0.00 0.00 4.02
4821 4970 2.572104 ACACAAATACTCCCTCTGTCCC 59.428 50.000 0.00 0.00 0.00 4.46
4822 4971 1.831736 ACAAATACTCCCTCTGTCCCG 59.168 52.381 0.00 0.00 0.00 5.14
4823 4972 2.108168 CAAATACTCCCTCTGTCCCGA 58.892 52.381 0.00 0.00 0.00 5.14
4824 4973 2.700897 CAAATACTCCCTCTGTCCCGAT 59.299 50.000 0.00 0.00 0.00 4.18
4825 4974 2.777459 ATACTCCCTCTGTCCCGATT 57.223 50.000 0.00 0.00 0.00 3.34
4826 4975 2.544844 TACTCCCTCTGTCCCGATTT 57.455 50.000 0.00 0.00 0.00 2.17
4827 4976 2.544844 ACTCCCTCTGTCCCGATTTA 57.455 50.000 0.00 0.00 0.00 1.40
4828 4977 2.829023 ACTCCCTCTGTCCCGATTTAA 58.171 47.619 0.00 0.00 0.00 1.52
4829 4978 2.500504 ACTCCCTCTGTCCCGATTTAAC 59.499 50.000 0.00 0.00 0.00 2.01
4830 4979 2.766828 CTCCCTCTGTCCCGATTTAACT 59.233 50.000 0.00 0.00 0.00 2.24
4831 4980 2.500098 TCCCTCTGTCCCGATTTAACTG 59.500 50.000 0.00 0.00 0.00 3.16
4832 4981 2.500098 CCCTCTGTCCCGATTTAACTGA 59.500 50.000 0.00 0.00 0.00 3.41
4833 4982 3.522553 CCTCTGTCCCGATTTAACTGAC 58.477 50.000 0.00 0.00 0.00 3.51
4834 4983 3.179830 CTCTGTCCCGATTTAACTGACG 58.820 50.000 0.00 0.00 0.00 4.35
4835 4984 1.659098 CTGTCCCGATTTAACTGACGC 59.341 52.381 0.00 0.00 0.00 5.19
4836 4985 1.004595 GTCCCGATTTAACTGACGCC 58.995 55.000 0.00 0.00 0.00 5.68
4837 4986 0.609151 TCCCGATTTAACTGACGCCA 59.391 50.000 0.00 0.00 0.00 5.69
4838 4987 1.208535 TCCCGATTTAACTGACGCCAT 59.791 47.619 0.00 0.00 0.00 4.40
4839 4988 2.014128 CCCGATTTAACTGACGCCATT 58.986 47.619 0.00 0.00 0.00 3.16
4840 4989 2.422127 CCCGATTTAACTGACGCCATTT 59.578 45.455 0.00 0.00 0.00 2.32
4841 4990 3.425404 CCGATTTAACTGACGCCATTTG 58.575 45.455 0.00 0.00 0.00 2.32
4842 4991 3.119990 CCGATTTAACTGACGCCATTTGT 60.120 43.478 0.00 0.00 0.00 2.83
4843 4992 4.093703 CCGATTTAACTGACGCCATTTGTA 59.906 41.667 0.00 0.00 0.00 2.41
4844 4993 5.220777 CCGATTTAACTGACGCCATTTGTAT 60.221 40.000 0.00 0.00 0.00 2.29
4845 4994 6.018588 CCGATTTAACTGACGCCATTTGTATA 60.019 38.462 0.00 0.00 0.00 1.47
4846 4995 6.844279 CGATTTAACTGACGCCATTTGTATAC 59.156 38.462 0.00 0.00 0.00 1.47
4847 4996 7.464844 CGATTTAACTGACGCCATTTGTATACA 60.465 37.037 0.08 0.08 0.00 2.29
4848 4997 7.436430 TTTAACTGACGCCATTTGTATACAA 57.564 32.000 14.35 14.35 0.00 2.41
4870 5019 8.622948 ACAAAATTTGTACTAGCTTAGCTCTT 57.377 30.769 11.09 0.83 43.27 2.85
4871 5020 8.722394 ACAAAATTTGTACTAGCTTAGCTCTTC 58.278 33.333 11.09 0.89 43.27 2.87
4872 5021 7.851387 AAATTTGTACTAGCTTAGCTCTTCC 57.149 36.000 11.09 0.00 40.44 3.46
4873 5022 6.800072 ATTTGTACTAGCTTAGCTCTTCCT 57.200 37.500 11.09 0.00 40.44 3.36
4874 5023 5.838531 TTGTACTAGCTTAGCTCTTCCTC 57.161 43.478 11.09 0.00 40.44 3.71
4875 5024 5.118729 TGTACTAGCTTAGCTCTTCCTCT 57.881 43.478 11.09 0.00 40.44 3.69
4876 5025 4.884744 TGTACTAGCTTAGCTCTTCCTCTG 59.115 45.833 11.09 0.00 40.44 3.35
4877 5026 2.693074 ACTAGCTTAGCTCTTCCTCTGC 59.307 50.000 11.09 0.00 40.44 4.26
4878 5027 0.459489 AGCTTAGCTCTTCCTCTGCG 59.541 55.000 0.00 0.00 30.62 5.18
4879 5028 0.174617 GCTTAGCTCTTCCTCTGCGT 59.825 55.000 0.00 0.00 0.00 5.24
4880 5029 1.801025 GCTTAGCTCTTCCTCTGCGTC 60.801 57.143 0.00 0.00 0.00 5.19
4881 5030 1.474478 CTTAGCTCTTCCTCTGCGTCA 59.526 52.381 0.00 0.00 0.00 4.35
4882 5031 0.811915 TAGCTCTTCCTCTGCGTCAC 59.188 55.000 0.00 0.00 0.00 3.67
4883 5032 0.897863 AGCTCTTCCTCTGCGTCACT 60.898 55.000 0.00 0.00 0.00 3.41
4884 5033 0.457681 GCTCTTCCTCTGCGTCACTC 60.458 60.000 0.00 0.00 0.00 3.51
4885 5034 0.884514 CTCTTCCTCTGCGTCACTCA 59.115 55.000 0.00 0.00 0.00 3.41
4886 5035 1.270826 CTCTTCCTCTGCGTCACTCAA 59.729 52.381 0.00 0.00 0.00 3.02
4887 5036 1.895798 TCTTCCTCTGCGTCACTCAAT 59.104 47.619 0.00 0.00 0.00 2.57
4888 5037 2.300152 TCTTCCTCTGCGTCACTCAATT 59.700 45.455 0.00 0.00 0.00 2.32
4889 5038 2.370281 TCCTCTGCGTCACTCAATTC 57.630 50.000 0.00 0.00 0.00 2.17
4890 5039 0.994995 CCTCTGCGTCACTCAATTCG 59.005 55.000 0.00 0.00 0.00 3.34
4891 5040 0.994995 CTCTGCGTCACTCAATTCGG 59.005 55.000 0.00 0.00 0.00 4.30
4892 5041 0.389817 TCTGCGTCACTCAATTCGGG 60.390 55.000 0.00 0.00 0.00 5.14
4893 5042 0.389817 CTGCGTCACTCAATTCGGGA 60.390 55.000 0.00 0.00 0.00 5.14
4894 5043 0.669318 TGCGTCACTCAATTCGGGAC 60.669 55.000 0.00 0.00 0.00 4.46
4910 5059 1.690893 GGGACGGAGGGAGTAAATACC 59.309 57.143 0.00 0.00 0.00 2.73
4917 5066 3.778629 GGAGGGAGTAAATACCAAGTGGA 59.221 47.826 3.83 0.00 38.94 4.02
4951 5100 4.712337 TGAGGAAAACTAAGGCAAAAACCA 59.288 37.500 0.00 0.00 0.00 3.67
5001 5150 0.324614 TCACCACCAACATGATCGCT 59.675 50.000 0.00 0.00 0.00 4.93
5013 5162 3.432051 GATCGCTGACCGGGGAGTG 62.432 68.421 6.32 7.87 37.59 3.51
5029 5178 3.057245 GGGAGTGGTGAGCAAAATCTTTC 60.057 47.826 0.00 0.00 0.00 2.62
5040 5189 3.489416 GCAAAATCTTTCGAAAACGCCTT 59.511 39.130 12.41 0.00 0.00 4.35
5048 5197 0.517316 CGAAAACGCCTTCAAGGAGG 59.483 55.000 7.98 0.00 39.71 4.30
5057 5206 1.283029 CCTTCAAGGAGGAAGATGGCA 59.717 52.381 0.00 0.00 45.66 4.92
5067 5216 1.202222 GGAAGATGGCATCAGCAAACG 60.202 52.381 27.93 0.00 44.61 3.60
5070 5219 2.710377 AGATGGCATCAGCAAACGTTA 58.290 42.857 27.93 0.00 44.61 3.18
5073 5222 2.431454 TGGCATCAGCAAACGTTATCA 58.569 42.857 0.00 0.00 44.61 2.15
5076 5225 3.283256 GCATCAGCAAACGTTATCATCG 58.717 45.455 0.00 0.00 41.58 3.84
5079 5228 2.596862 TCAGCAAACGTTATCATCGTCG 59.403 45.455 0.00 0.00 40.69 5.12
5081 5230 2.597305 AGCAAACGTTATCATCGTCGAC 59.403 45.455 5.18 5.18 40.69 4.20
5093 5242 0.242825 TCGTCGACATTGACCCTGTC 59.757 55.000 17.16 0.00 39.69 3.51
5122 5271 2.785713 TTTTCCGCCAAAAGCTACAC 57.214 45.000 0.00 0.00 40.39 2.90
5155 5304 2.224646 GCCAAACCTTGAGGAAGAGTCT 60.225 50.000 3.59 0.00 38.94 3.24
5185 5335 2.128771 AAAAGCCGCCATGACATACT 57.871 45.000 0.00 0.00 0.00 2.12
5187 5337 0.541392 AAGCCGCCATGACATACTCA 59.459 50.000 0.00 0.00 0.00 3.41
5210 5360 0.606401 CCGAGCAGACACAACCCAAT 60.606 55.000 0.00 0.00 0.00 3.16
5220 5370 4.020128 AGACACAACCCAATAGAGAGGAAC 60.020 45.833 0.00 0.00 0.00 3.62
5225 5375 2.840651 ACCCAATAGAGAGGAACCACTG 59.159 50.000 0.00 0.00 0.00 3.66
5226 5376 2.171448 CCCAATAGAGAGGAACCACTGG 59.829 54.545 0.00 0.00 0.00 4.00
5227 5377 2.420687 CCAATAGAGAGGAACCACTGGC 60.421 54.545 0.00 0.00 0.00 4.85
5228 5378 2.237143 CAATAGAGAGGAACCACTGGCA 59.763 50.000 0.00 0.00 0.00 4.92
5229 5379 1.561643 TAGAGAGGAACCACTGGCAG 58.438 55.000 14.16 14.16 0.00 4.85
5230 5380 0.472734 AGAGAGGAACCACTGGCAGT 60.473 55.000 15.88 15.88 0.00 4.40
5231 5381 1.203187 AGAGAGGAACCACTGGCAGTA 60.203 52.381 21.59 0.00 0.00 2.74
5232 5382 1.623811 GAGAGGAACCACTGGCAGTAA 59.376 52.381 21.59 0.00 0.00 2.24
5233 5383 2.038557 GAGAGGAACCACTGGCAGTAAA 59.961 50.000 21.59 0.00 0.00 2.01
5234 5384 2.039084 AGAGGAACCACTGGCAGTAAAG 59.961 50.000 21.59 14.35 0.00 1.85
5235 5385 2.038557 GAGGAACCACTGGCAGTAAAGA 59.961 50.000 21.59 0.00 0.00 2.52
5236 5386 2.441750 AGGAACCACTGGCAGTAAAGAA 59.558 45.455 21.59 0.00 0.00 2.52
5237 5387 3.074538 AGGAACCACTGGCAGTAAAGAAT 59.925 43.478 21.59 3.55 0.00 2.40
5238 5388 3.191371 GGAACCACTGGCAGTAAAGAATG 59.809 47.826 21.59 5.91 0.00 2.67
5239 5389 3.788227 ACCACTGGCAGTAAAGAATGA 57.212 42.857 21.59 0.00 0.00 2.57
5240 5390 3.412386 ACCACTGGCAGTAAAGAATGAC 58.588 45.455 21.59 0.00 0.00 3.06
5241 5391 3.181445 ACCACTGGCAGTAAAGAATGACA 60.181 43.478 21.59 0.00 32.29 3.58
5242 5392 4.012374 CCACTGGCAGTAAAGAATGACAT 58.988 43.478 21.59 0.00 32.96 3.06
5243 5393 4.095483 CCACTGGCAGTAAAGAATGACATC 59.905 45.833 21.59 0.00 32.96 3.06
5244 5394 4.095483 CACTGGCAGTAAAGAATGACATCC 59.905 45.833 21.59 0.00 32.96 3.51
5245 5395 4.263462 ACTGGCAGTAAAGAATGACATCCA 60.263 41.667 20.61 0.00 32.96 3.41
5246 5396 4.264253 TGGCAGTAAAGAATGACATCCAG 58.736 43.478 0.00 0.00 26.56 3.86
5247 5397 3.065925 GGCAGTAAAGAATGACATCCAGC 59.934 47.826 0.00 0.00 0.00 4.85
5248 5398 3.065925 GCAGTAAAGAATGACATCCAGCC 59.934 47.826 0.00 0.00 0.00 4.85
5249 5399 4.264253 CAGTAAAGAATGACATCCAGCCA 58.736 43.478 0.00 0.00 0.00 4.75
5250 5400 4.334759 CAGTAAAGAATGACATCCAGCCAG 59.665 45.833 0.00 0.00 0.00 4.85
5251 5401 3.446442 AAAGAATGACATCCAGCCAGT 57.554 42.857 0.00 0.00 0.00 4.00
5252 5402 4.574674 AAAGAATGACATCCAGCCAGTA 57.425 40.909 0.00 0.00 0.00 2.74
5253 5403 4.785346 AAGAATGACATCCAGCCAGTAT 57.215 40.909 0.00 0.00 0.00 2.12
5254 5404 4.082665 AGAATGACATCCAGCCAGTATG 57.917 45.455 0.00 0.00 0.00 2.39
5255 5405 3.713248 AGAATGACATCCAGCCAGTATGA 59.287 43.478 0.00 0.00 39.69 2.15
5256 5406 2.988010 TGACATCCAGCCAGTATGAC 57.012 50.000 0.00 0.00 39.69 3.06
5257 5407 2.470990 TGACATCCAGCCAGTATGACT 58.529 47.619 0.00 0.00 39.69 3.41
5258 5408 2.432146 TGACATCCAGCCAGTATGACTC 59.568 50.000 0.00 0.00 39.69 3.36
5259 5409 1.765314 ACATCCAGCCAGTATGACTCC 59.235 52.381 0.00 0.00 39.69 3.85
5260 5410 2.045524 CATCCAGCCAGTATGACTCCT 58.954 52.381 0.00 0.00 39.69 3.69
5261 5411 2.254152 TCCAGCCAGTATGACTCCTT 57.746 50.000 0.00 0.00 39.69 3.36
5262 5412 1.833630 TCCAGCCAGTATGACTCCTTG 59.166 52.381 0.00 0.00 39.69 3.61
5263 5413 1.134280 CCAGCCAGTATGACTCCTTGG 60.134 57.143 0.00 0.00 39.69 3.61
5264 5414 1.134280 CAGCCAGTATGACTCCTTGGG 60.134 57.143 0.00 0.00 39.69 4.12
5265 5415 1.204146 GCCAGTATGACTCCTTGGGA 58.796 55.000 0.00 0.00 39.69 4.37
5266 5416 1.134371 GCCAGTATGACTCCTTGGGAC 60.134 57.143 0.00 0.00 39.69 4.46
5267 5417 2.187958 CCAGTATGACTCCTTGGGACA 58.812 52.381 0.00 0.00 39.69 4.02
5268 5418 2.093447 CCAGTATGACTCCTTGGGACAC 60.093 54.545 0.00 0.00 36.13 3.67
5269 5419 2.834549 CAGTATGACTCCTTGGGACACT 59.165 50.000 0.00 0.00 36.13 3.55
5270 5420 3.261897 CAGTATGACTCCTTGGGACACTT 59.738 47.826 0.00 0.00 36.13 3.16
5271 5421 2.867109 ATGACTCCTTGGGACACTTG 57.133 50.000 0.00 0.00 39.29 3.16
5272 5422 1.801242 TGACTCCTTGGGACACTTGA 58.199 50.000 0.00 0.00 39.29 3.02
5273 5423 2.123589 TGACTCCTTGGGACACTTGAA 58.876 47.619 0.00 0.00 39.29 2.69
5274 5424 2.104792 TGACTCCTTGGGACACTTGAAG 59.895 50.000 0.00 0.00 39.29 3.02
5275 5425 1.421646 ACTCCTTGGGACACTTGAAGG 59.578 52.381 0.00 0.00 39.29 3.46
5276 5426 1.699634 CTCCTTGGGACACTTGAAGGA 59.300 52.381 0.00 0.00 41.37 3.36
5277 5427 1.699634 TCCTTGGGACACTTGAAGGAG 59.300 52.381 0.00 0.00 39.25 3.69
5278 5428 1.271597 CCTTGGGACACTTGAAGGAGG 60.272 57.143 0.00 0.00 39.29 4.30
5279 5429 1.699634 CTTGGGACACTTGAAGGAGGA 59.300 52.381 0.00 0.00 39.29 3.71
5280 5430 1.352083 TGGGACACTTGAAGGAGGAG 58.648 55.000 0.00 0.00 0.00 3.69
5281 5431 0.035915 GGGACACTTGAAGGAGGAGC 60.036 60.000 0.00 0.00 0.00 4.70
5282 5432 0.687354 GGACACTTGAAGGAGGAGCA 59.313 55.000 0.00 0.00 0.00 4.26
5283 5433 1.609320 GGACACTTGAAGGAGGAGCAC 60.609 57.143 0.00 0.00 0.00 4.40
5284 5434 0.398318 ACACTTGAAGGAGGAGCACC 59.602 55.000 0.00 0.00 0.00 5.01
5285 5435 0.397941 CACTTGAAGGAGGAGCACCA 59.602 55.000 2.07 0.00 38.94 4.17
5286 5436 0.689623 ACTTGAAGGAGGAGCACCAG 59.310 55.000 2.07 0.00 38.94 4.00
5287 5437 0.979665 CTTGAAGGAGGAGCACCAGA 59.020 55.000 2.07 0.00 38.94 3.86
5288 5438 1.349026 CTTGAAGGAGGAGCACCAGAA 59.651 52.381 2.07 0.00 38.94 3.02
5289 5439 0.979665 TGAAGGAGGAGCACCAGAAG 59.020 55.000 2.07 0.00 38.94 2.85
5290 5440 0.980423 GAAGGAGGAGCACCAGAAGT 59.020 55.000 2.07 0.00 38.94 3.01
5291 5441 2.180276 GAAGGAGGAGCACCAGAAGTA 58.820 52.381 2.07 0.00 38.94 2.24
5292 5442 1.859302 AGGAGGAGCACCAGAAGTAG 58.141 55.000 2.07 0.00 38.94 2.57
5293 5443 1.359474 AGGAGGAGCACCAGAAGTAGA 59.641 52.381 2.07 0.00 38.94 2.59
5294 5444 1.754226 GGAGGAGCACCAGAAGTAGAG 59.246 57.143 2.07 0.00 38.94 2.43
5295 5445 1.754226 GAGGAGCACCAGAAGTAGAGG 59.246 57.143 2.07 0.00 38.94 3.69
5296 5446 0.827368 GGAGCACCAGAAGTAGAGGG 59.173 60.000 0.00 0.00 35.97 4.30
5297 5447 1.619977 GGAGCACCAGAAGTAGAGGGA 60.620 57.143 0.00 0.00 35.97 4.20
5298 5448 1.478916 GAGCACCAGAAGTAGAGGGAC 59.521 57.143 0.00 0.00 0.00 4.46
5299 5449 0.537653 GCACCAGAAGTAGAGGGACC 59.462 60.000 0.00 0.00 0.00 4.46
5300 5450 1.938585 CACCAGAAGTAGAGGGACCA 58.061 55.000 0.00 0.00 0.00 4.02
5301 5451 1.827969 CACCAGAAGTAGAGGGACCAG 59.172 57.143 0.00 0.00 0.00 4.00
5302 5452 1.717077 ACCAGAAGTAGAGGGACCAGA 59.283 52.381 0.00 0.00 0.00 3.86
5303 5453 2.111972 ACCAGAAGTAGAGGGACCAGAA 59.888 50.000 0.00 0.00 0.00 3.02
5304 5454 2.763448 CCAGAAGTAGAGGGACCAGAAG 59.237 54.545 0.00 0.00 0.00 2.85
5305 5455 3.564571 CCAGAAGTAGAGGGACCAGAAGA 60.565 52.174 0.00 0.00 0.00 2.87
5306 5456 4.285863 CAGAAGTAGAGGGACCAGAAGAT 58.714 47.826 0.00 0.00 0.00 2.40
5307 5457 4.099266 CAGAAGTAGAGGGACCAGAAGATG 59.901 50.000 0.00 0.00 0.00 2.90
5308 5458 4.017037 AGAAGTAGAGGGACCAGAAGATGA 60.017 45.833 0.00 0.00 0.00 2.92
5309 5459 4.338795 AGTAGAGGGACCAGAAGATGAA 57.661 45.455 0.00 0.00 0.00 2.57
5310 5460 4.285863 AGTAGAGGGACCAGAAGATGAAG 58.714 47.826 0.00 0.00 0.00 3.02
5311 5461 1.836802 AGAGGGACCAGAAGATGAAGC 59.163 52.381 0.00 0.00 0.00 3.86
5312 5462 1.836802 GAGGGACCAGAAGATGAAGCT 59.163 52.381 0.00 0.00 0.00 3.74
5313 5463 2.238395 GAGGGACCAGAAGATGAAGCTT 59.762 50.000 0.00 0.00 0.00 3.74
5314 5464 2.238395 AGGGACCAGAAGATGAAGCTTC 59.762 50.000 19.89 19.89 43.57 3.86
5315 5465 2.026822 GGGACCAGAAGATGAAGCTTCA 60.027 50.000 30.23 30.23 45.21 3.02
5316 5466 3.560025 GGGACCAGAAGATGAAGCTTCAA 60.560 47.826 31.55 16.04 45.21 2.69
5317 5467 3.438434 GGACCAGAAGATGAAGCTTCAAC 59.562 47.826 31.55 27.94 45.21 3.18
5318 5468 4.067896 GACCAGAAGATGAAGCTTCAACA 58.932 43.478 31.55 11.09 45.21 3.33
5319 5469 4.070716 ACCAGAAGATGAAGCTTCAACAG 58.929 43.478 31.55 18.63 45.21 3.16
5331 5481 3.308438 CTTCAACAGCAAATCTTGGGG 57.692 47.619 0.00 0.00 0.00 4.96
5332 5482 0.968405 TCAACAGCAAATCTTGGGGC 59.032 50.000 0.00 0.00 0.00 5.80
5333 5483 0.680618 CAACAGCAAATCTTGGGGCA 59.319 50.000 0.00 0.00 0.00 5.36
5334 5484 0.971386 AACAGCAAATCTTGGGGCAG 59.029 50.000 0.00 0.00 0.00 4.85
5335 5485 0.178953 ACAGCAAATCTTGGGGCAGT 60.179 50.000 0.00 0.00 0.00 4.40
5336 5486 0.245539 CAGCAAATCTTGGGGCAGTG 59.754 55.000 0.00 0.00 0.00 3.66
5337 5487 0.112995 AGCAAATCTTGGGGCAGTGA 59.887 50.000 0.00 0.00 0.00 3.41
5338 5488 0.968405 GCAAATCTTGGGGCAGTGAA 59.032 50.000 0.00 0.00 0.00 3.18
5339 5489 1.344114 GCAAATCTTGGGGCAGTGAAA 59.656 47.619 0.00 0.00 0.00 2.69
5340 5490 2.611224 GCAAATCTTGGGGCAGTGAAAG 60.611 50.000 0.00 0.00 0.00 2.62
5341 5491 1.928868 AATCTTGGGGCAGTGAAAGG 58.071 50.000 0.00 0.00 0.00 3.11
5342 5492 0.613012 ATCTTGGGGCAGTGAAAGGC 60.613 55.000 0.00 0.00 0.00 4.35
5347 5497 3.369921 GGCAGTGAAAGGCCTTGG 58.630 61.111 21.33 7.84 46.74 3.61
5348 5498 1.228552 GGCAGTGAAAGGCCTTGGA 60.229 57.895 21.33 5.57 46.74 3.53
5349 5499 0.827507 GGCAGTGAAAGGCCTTGGAA 60.828 55.000 21.33 4.67 46.74 3.53
5350 5500 0.315251 GCAGTGAAAGGCCTTGGAAC 59.685 55.000 21.33 17.20 0.00 3.62
5351 5501 1.691196 CAGTGAAAGGCCTTGGAACA 58.309 50.000 21.33 14.12 0.00 3.18
5352 5502 1.338020 CAGTGAAAGGCCTTGGAACAC 59.662 52.381 21.33 23.61 39.29 3.32
5353 5503 1.215423 AGTGAAAGGCCTTGGAACACT 59.785 47.619 27.07 27.07 39.29 3.55
5354 5504 2.031870 GTGAAAGGCCTTGGAACACTT 58.968 47.619 21.33 0.00 39.29 3.16
5355 5505 2.031120 TGAAAGGCCTTGGAACACTTG 58.969 47.619 21.33 0.00 39.29 3.16
5356 5506 0.752658 AAAGGCCTTGGAACACTTGC 59.247 50.000 21.33 0.00 39.29 4.01
5357 5507 0.396974 AAGGCCTTGGAACACTTGCA 60.397 50.000 19.73 0.00 39.29 4.08
5358 5508 1.109323 AGGCCTTGGAACACTTGCAC 61.109 55.000 0.00 0.00 39.29 4.57
5359 5509 1.109323 GGCCTTGGAACACTTGCACT 61.109 55.000 0.00 0.00 39.29 4.40
5360 5510 1.604604 GCCTTGGAACACTTGCACTA 58.395 50.000 0.00 0.00 39.29 2.74
5361 5511 1.537202 GCCTTGGAACACTTGCACTAG 59.463 52.381 0.00 0.00 39.29 2.57
5362 5512 1.537202 CCTTGGAACACTTGCACTAGC 59.463 52.381 0.00 0.00 39.29 3.42
5363 5513 2.498167 CTTGGAACACTTGCACTAGCT 58.502 47.619 0.00 0.00 39.29 3.32
5364 5514 1.882912 TGGAACACTTGCACTAGCTG 58.117 50.000 0.00 0.00 42.74 4.24
5365 5515 1.416030 TGGAACACTTGCACTAGCTGA 59.584 47.619 0.00 0.00 42.74 4.26
5366 5516 1.801178 GGAACACTTGCACTAGCTGAC 59.199 52.381 0.00 0.00 42.74 3.51
5367 5517 1.801178 GAACACTTGCACTAGCTGACC 59.199 52.381 0.00 0.00 42.74 4.02
5368 5518 1.051812 ACACTTGCACTAGCTGACCT 58.948 50.000 0.00 0.00 42.74 3.85
5369 5519 1.417890 ACACTTGCACTAGCTGACCTT 59.582 47.619 0.00 0.00 42.74 3.50
5370 5520 2.072298 CACTTGCACTAGCTGACCTTC 58.928 52.381 0.00 0.00 42.74 3.46
5371 5521 1.974236 ACTTGCACTAGCTGACCTTCT 59.026 47.619 0.00 0.00 42.74 2.85
5372 5522 2.370189 ACTTGCACTAGCTGACCTTCTT 59.630 45.455 0.00 0.00 42.74 2.52
5373 5523 2.462456 TGCACTAGCTGACCTTCTTG 57.538 50.000 0.00 0.00 42.74 3.02
5374 5524 1.082690 GCACTAGCTGACCTTCTTGC 58.917 55.000 0.00 0.00 37.91 4.01
5375 5525 1.609061 GCACTAGCTGACCTTCTTGCA 60.609 52.381 0.00 0.00 37.91 4.08
5376 5526 2.344950 CACTAGCTGACCTTCTTGCAG 58.655 52.381 0.00 0.00 0.00 4.41
5377 5527 2.028658 CACTAGCTGACCTTCTTGCAGA 60.029 50.000 0.00 0.00 0.00 4.26
5378 5528 2.836981 ACTAGCTGACCTTCTTGCAGAT 59.163 45.455 0.00 0.00 32.49 2.90
5379 5529 2.399916 AGCTGACCTTCTTGCAGATC 57.600 50.000 0.00 0.00 0.00 2.75
5380 5530 1.907936 AGCTGACCTTCTTGCAGATCT 59.092 47.619 0.00 0.00 0.00 2.75
5381 5531 2.305343 AGCTGACCTTCTTGCAGATCTT 59.695 45.455 0.00 0.00 0.00 2.40
5382 5532 2.419324 GCTGACCTTCTTGCAGATCTTG 59.581 50.000 0.00 0.00 0.00 3.02
5408 5558 1.719600 CAGACCTTGCAGTAGCTGAC 58.280 55.000 0.00 0.00 42.74 3.51
5409 5559 0.610687 AGACCTTGCAGTAGCTGACC 59.389 55.000 0.00 0.00 42.74 4.02
5410 5560 0.610687 GACCTTGCAGTAGCTGACCT 59.389 55.000 0.00 0.00 42.74 3.85
5411 5561 1.002544 GACCTTGCAGTAGCTGACCTT 59.997 52.381 0.00 0.00 42.74 3.50
5412 5562 1.271054 ACCTTGCAGTAGCTGACCTTG 60.271 52.381 0.00 0.00 42.74 3.61
5413 5563 0.801251 CTTGCAGTAGCTGACCTTGC 59.199 55.000 0.00 0.00 42.74 4.01
5414 5564 0.397941 TTGCAGTAGCTGACCTTGCT 59.602 50.000 0.00 0.00 43.79 3.91
5415 5565 0.321034 TGCAGTAGCTGACCTTGCTG 60.321 55.000 0.00 0.00 41.32 4.41
5416 5566 1.023513 GCAGTAGCTGACCTTGCTGG 61.024 60.000 0.00 0.00 41.32 4.85
5417 5567 3.652237 GCAGTAGCTGACCTTGCTGGT 62.652 57.143 0.00 1.65 45.03 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.420430 GGGAGTAATGGATGGACGGA 58.580 55.000 0.00 0.00 0.00 4.69
87 88 3.063084 GGAGACGGGTCGAGCACT 61.063 66.667 17.59 11.95 34.09 4.40
120 121 0.249322 ACCACGAACGGAACTGACTG 60.249 55.000 0.00 0.00 0.00 3.51
125 126 0.966920 ATCTCACCACGAACGGAACT 59.033 50.000 0.00 0.00 0.00 3.01
152 153 2.618709 CCATTTCCCCAATTAGAGACGC 59.381 50.000 0.00 0.00 0.00 5.19
275 276 4.460382 AGATGAAAATTCCACAACGCAGAT 59.540 37.500 0.00 0.00 0.00 2.90
383 384 2.107204 AGATATCCTGGACATGTTGGGC 59.893 50.000 0.00 0.00 0.00 5.36
386 387 6.662865 AGACTAGATATCCTGGACATGTTG 57.337 41.667 0.00 0.00 0.00 3.33
391 392 6.069323 GGATCCTAGACTAGATATCCTGGACA 60.069 46.154 23.63 0.00 36.25 4.02
411 412 2.131023 AGGAACTCCATCCAAGGATCC 58.869 52.381 2.48 2.48 42.27 3.36
461 462 3.260205 AGGGAAAGAAACAGAGGGATGA 58.740 45.455 0.00 0.00 0.00 2.92
466 467 6.901081 ATGTAAAAGGGAAAGAAACAGAGG 57.099 37.500 0.00 0.00 0.00 3.69
502 507 3.633986 CCTCAACTGCCAGAAAAACTTCT 59.366 43.478 0.00 0.00 0.00 2.85
505 510 2.689983 CACCTCAACTGCCAGAAAAACT 59.310 45.455 0.00 0.00 0.00 2.66
517 522 2.896685 CAGTCTCTTCTCCACCTCAACT 59.103 50.000 0.00 0.00 0.00 3.16
530 535 2.906389 TCACTTGTATGGCCAGTCTCTT 59.094 45.455 13.05 0.00 0.00 2.85
538 543 2.497675 TCTCTCACTCACTTGTATGGCC 59.502 50.000 0.00 0.00 0.00 5.36
629 635 1.349026 CAAAGGAGGAGGCAGAAGACA 59.651 52.381 0.00 0.00 0.00 3.41
696 702 5.450818 ACTAAATTGTGGATAGGAGGCAA 57.549 39.130 0.00 0.00 0.00 4.52
769 775 1.814394 CAGGCTTCAAATGTGCTAGCA 59.186 47.619 14.93 14.93 35.21 3.49
919 925 3.422603 CGTAAGTACCATGCGTTCACAAC 60.423 47.826 0.00 0.00 0.00 3.32
979 985 1.178276 CAGGTTAGAGACGAGCACCT 58.822 55.000 0.00 0.00 38.46 4.00
997 1003 4.237843 AGAGGATATCTTGCTCCCATTCA 58.762 43.478 2.05 0.00 43.47 2.57
1110 1116 2.057137 TCATAACTCAGCAATGGGCC 57.943 50.000 0.00 0.00 46.50 5.80
1240 1247 6.936279 ACAGTACTAGAAAGATTAGCAGCAA 58.064 36.000 0.00 0.00 0.00 3.91
1486 1493 6.037786 TCTCGTCCATTCACTTGATAAGTT 57.962 37.500 0.00 0.00 40.46 2.66
1510 1517 3.507622 CCAGAGAAAACCATCCTTGAACC 59.492 47.826 0.00 0.00 0.00 3.62
1880 1888 5.527582 AGTTCCTGTGTTCTGTCAAATGTAC 59.472 40.000 0.00 0.00 0.00 2.90
2109 2117 6.164176 GGTAGTCCCAATATGTAATCTTCGG 58.836 44.000 0.00 0.00 0.00 4.30
2197 2208 8.268850 TCAACTTTATATTGCTTCTGACCTTC 57.731 34.615 0.00 0.00 0.00 3.46
2455 2466 8.914011 TCATAGCTGTAGTTGTAACTCATACAT 58.086 33.333 0.00 0.00 43.84 2.29
2661 2672 5.885230 CGGGTACGTTCCTATCATGTATA 57.115 43.478 11.29 0.00 34.81 1.47
2662 2673 4.778534 CGGGTACGTTCCTATCATGTAT 57.221 45.455 11.29 0.00 34.81 2.29
2700 2711 8.423349 TGAAGATGTTGTCAAGGAATCAAAAAT 58.577 29.630 5.90 0.00 0.00 1.82
2809 2822 2.307098 AGAAGATTGCCAGCTTACCTGT 59.693 45.455 0.00 0.00 40.06 4.00
2905 2918 2.570302 GGCCTGGTGTTTTCTCCTACTA 59.430 50.000 0.00 0.00 34.83 1.82
3050 3063 3.710722 CCCAGGCAGAAGGCGACT 61.711 66.667 0.00 0.00 46.16 4.18
3125 3138 6.648310 ACTTGTTCTGTATCTCATTGACAGTG 59.352 38.462 0.00 0.00 41.14 3.66
3182 3195 4.023536 GCACGTTTTAAGGTTTGGATCTCA 60.024 41.667 0.00 0.00 0.00 3.27
3296 3309 0.389817 CTGCGAATGGACCGACAAGA 60.390 55.000 0.00 0.00 0.00 3.02
3453 3466 7.095940 CGAGCAAATGAATCATGTCAAAAGTTT 60.096 33.333 0.00 0.00 0.00 2.66
3454 3467 6.364165 CGAGCAAATGAATCATGTCAAAAGTT 59.636 34.615 0.00 0.00 0.00 2.66
3564 3580 1.071471 CCACGTCAAGGCTTCTGGT 59.929 57.895 0.00 0.00 0.00 4.00
3682 3698 1.210967 ACTTGGGGAACGTCTTGAACA 59.789 47.619 0.00 0.00 0.00 3.18
3769 3785 0.929824 CACCGCGTTTGCAAACTCTG 60.930 55.000 33.03 25.66 42.97 3.35
3811 3827 3.469863 AAGAAGCCGTTGACCCGCA 62.470 57.895 0.00 0.00 0.00 5.69
3879 3895 1.083806 ACGCCGACATACACATGCAG 61.084 55.000 0.00 0.00 35.39 4.41
3884 3900 1.245376 TGAGGACGCCGACATACACA 61.245 55.000 0.00 0.00 0.00 3.72
4041 4057 5.118990 GTCCATCAAGCAAAGCAGATACTA 58.881 41.667 0.00 0.00 0.00 1.82
4117 4139 4.099633 TCCACCAAAGAGATCAGTCAGAT 58.900 43.478 0.00 0.00 40.48 2.90
4136 4159 0.552848 GGCTCCCTGAAATCCATCCA 59.447 55.000 0.00 0.00 0.00 3.41
4174 4197 2.322658 TCGTGTAGGGAAGGTTCTTGT 58.677 47.619 0.00 0.00 0.00 3.16
4175 4198 3.056107 TGATCGTGTAGGGAAGGTTCTTG 60.056 47.826 0.00 0.00 0.00 3.02
4179 4202 1.207329 GCTGATCGTGTAGGGAAGGTT 59.793 52.381 0.00 0.00 0.00 3.50
4233 4256 1.542187 GGAGGTACCGAGCCACTGTT 61.542 60.000 6.18 0.00 0.00 3.16
4311 4334 4.589675 GGGGTCGTTGGGGCACAA 62.590 66.667 0.00 0.00 36.54 3.33
4371 4394 1.880819 TACTCAGGTTTCCCCGTCGC 61.881 60.000 0.00 0.00 38.74 5.19
4425 4448 2.930950 CTGGTTCCACCACAAGAAAGA 58.069 47.619 0.00 0.00 44.79 2.52
4426 4449 1.338020 GCTGGTTCCACCACAAGAAAG 59.662 52.381 0.00 0.00 44.79 2.62
4427 4450 1.398692 GCTGGTTCCACCACAAGAAA 58.601 50.000 0.00 0.00 44.79 2.52
4428 4451 0.467290 GGCTGGTTCCACCACAAGAA 60.467 55.000 0.00 0.00 44.79 2.52
4429 4452 1.150536 GGCTGGTTCCACCACAAGA 59.849 57.895 0.00 0.00 44.79 3.02
4430 4453 1.903404 GGGCTGGTTCCACCACAAG 60.903 63.158 10.75 0.00 44.79 3.16
4431 4454 2.017668 ATGGGCTGGTTCCACCACAA 62.018 55.000 3.77 0.00 44.79 3.33
4432 4455 2.424842 GATGGGCTGGTTCCACCACA 62.425 60.000 3.77 0.00 44.79 4.17
4433 4456 1.678970 GATGGGCTGGTTCCACCAC 60.679 63.158 3.77 0.00 44.79 4.16
4435 4458 2.043953 GGATGGGCTGGTTCCACC 60.044 66.667 0.00 0.00 37.08 4.61
4436 4459 1.379044 CTGGATGGGCTGGTTCCAC 60.379 63.158 0.00 0.00 37.08 4.02
4437 4460 2.615465 CCTGGATGGGCTGGTTCCA 61.615 63.158 0.00 0.00 37.20 3.53
4438 4461 2.155197 AACCTGGATGGGCTGGTTCC 62.155 60.000 0.00 0.00 38.26 3.62
4439 4462 1.384191 AACCTGGATGGGCTGGTTC 59.616 57.895 0.00 0.00 38.26 3.62
4440 4463 1.384191 GAACCTGGATGGGCTGGTT 59.616 57.895 0.00 0.00 44.43 3.67
4441 4464 1.434513 TTGAACCTGGATGGGCTGGT 61.435 55.000 0.00 0.00 41.11 4.00
4442 4465 0.682209 CTTGAACCTGGATGGGCTGG 60.682 60.000 0.00 0.00 41.11 4.85
4443 4466 0.038744 ACTTGAACCTGGATGGGCTG 59.961 55.000 0.00 0.00 41.11 4.85
4444 4467 0.329596 GACTTGAACCTGGATGGGCT 59.670 55.000 0.00 0.00 41.11 5.19
4445 4468 0.681243 GGACTTGAACCTGGATGGGC 60.681 60.000 0.00 0.00 41.11 5.36
4502 4541 2.237751 GCAGACGCTCACAACACGT 61.238 57.895 0.00 0.00 43.83 4.49
4548 4587 2.840753 GCAAAGAGTGGGGTGGGGA 61.841 63.158 0.00 0.00 0.00 4.81
4588 4689 4.963276 TTCCAGTATGTAATGCACAAGC 57.037 40.909 0.00 0.00 41.55 4.01
4688 4837 7.714813 ACCTTGCATTATAAAAACAAAGTTGCT 59.285 29.630 0.00 0.00 0.00 3.91
4697 4846 5.886992 ACGCCTACCTTGCATTATAAAAAC 58.113 37.500 0.00 0.00 0.00 2.43
4700 4849 5.295787 CAGAACGCCTACCTTGCATTATAAA 59.704 40.000 0.00 0.00 0.00 1.40
4705 4854 1.453155 CAGAACGCCTACCTTGCATT 58.547 50.000 0.00 0.00 0.00 3.56
4708 4857 1.376037 AGCAGAACGCCTACCTTGC 60.376 57.895 0.00 0.00 44.04 4.01
4726 4875 8.146412 CCATCTATCTATATGAAATCGGCATCA 58.854 37.037 0.00 0.00 0.00 3.07
4784 4933 9.965902 AGTATTTGTGTTTTCTCCATCTATCTT 57.034 29.630 0.00 0.00 0.00 2.40
4801 4950 2.418746 CGGGACAGAGGGAGTATTTGTG 60.419 54.545 0.00 0.00 0.00 3.33
4809 4958 2.766828 AGTTAAATCGGGACAGAGGGAG 59.233 50.000 0.00 0.00 0.00 4.30
4810 4959 2.500098 CAGTTAAATCGGGACAGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
4811 4960 2.500098 TCAGTTAAATCGGGACAGAGGG 59.500 50.000 0.00 0.00 0.00 4.30
4812 4961 3.522553 GTCAGTTAAATCGGGACAGAGG 58.477 50.000 0.00 0.00 0.00 3.69
4814 4963 2.673043 GCGTCAGTTAAATCGGGACAGA 60.673 50.000 0.00 0.00 0.00 3.41
4815 4964 1.659098 GCGTCAGTTAAATCGGGACAG 59.341 52.381 0.00 0.00 0.00 3.51
4816 4965 1.673626 GGCGTCAGTTAAATCGGGACA 60.674 52.381 0.00 0.00 0.00 4.02
4817 4966 1.004595 GGCGTCAGTTAAATCGGGAC 58.995 55.000 0.00 0.00 0.00 4.46
4818 4967 0.609151 TGGCGTCAGTTAAATCGGGA 59.391 50.000 0.00 0.00 0.00 5.14
4819 4968 1.663695 ATGGCGTCAGTTAAATCGGG 58.336 50.000 0.00 0.00 0.00 5.14
4820 4969 3.119990 ACAAATGGCGTCAGTTAAATCGG 60.120 43.478 0.94 0.00 29.38 4.18
4821 4970 4.078363 ACAAATGGCGTCAGTTAAATCG 57.922 40.909 0.94 0.00 29.38 3.34
4822 4971 7.690228 TGTATACAAATGGCGTCAGTTAAATC 58.310 34.615 0.94 0.00 29.38 2.17
4823 4972 7.618502 TGTATACAAATGGCGTCAGTTAAAT 57.381 32.000 0.94 2.03 29.38 1.40
4824 4973 7.436430 TTGTATACAAATGGCGTCAGTTAAA 57.564 32.000 15.92 0.00 32.11 1.52
4825 4974 7.436430 TTTGTATACAAATGGCGTCAGTTAA 57.564 32.000 23.91 0.00 40.55 2.01
4826 4975 7.436430 TTTTGTATACAAATGGCGTCAGTTA 57.564 32.000 27.14 8.89 44.30 2.24
4827 4976 5.950758 TTTGTATACAAATGGCGTCAGTT 57.049 34.783 23.91 0.00 40.55 3.16
4828 4977 5.950758 TTTTGTATACAAATGGCGTCAGT 57.049 34.783 27.14 0.00 44.30 3.41
4829 4978 7.328249 ACAAATTTTGTATACAAATGGCGTCAG 59.672 33.333 27.14 15.55 44.30 3.51
4830 4979 7.148641 ACAAATTTTGTATACAAATGGCGTCA 58.851 30.769 27.14 13.82 44.30 4.35
4831 4980 7.575332 ACAAATTTTGTATACAAATGGCGTC 57.425 32.000 27.14 0.00 44.30 5.19
4832 4981 8.301002 AGTACAAATTTTGTATACAAATGGCGT 58.699 29.630 27.14 22.50 46.73 5.68
4833 4982 8.682128 AGTACAAATTTTGTATACAAATGGCG 57.318 30.769 27.14 19.04 46.73 5.69
4843 4992 9.892130 AGAGCTAAGCTAGTACAAATTTTGTAT 57.108 29.630 21.42 14.03 42.86 2.29
4844 4993 9.720769 AAGAGCTAAGCTAGTACAAATTTTGTA 57.279 29.630 16.17 16.17 41.34 2.41
4845 4994 8.622948 AAGAGCTAAGCTAGTACAAATTTTGT 57.377 30.769 18.13 18.13 42.87 2.83
4846 4995 8.178313 GGAAGAGCTAAGCTAGTACAAATTTTG 58.822 37.037 7.59 7.59 39.88 2.44
4847 4996 8.103935 AGGAAGAGCTAAGCTAGTACAAATTTT 58.896 33.333 0.00 0.00 39.88 1.82
4848 4997 7.625469 AGGAAGAGCTAAGCTAGTACAAATTT 58.375 34.615 0.00 0.00 39.88 1.82
4849 4998 7.125053 AGAGGAAGAGCTAAGCTAGTACAAATT 59.875 37.037 0.00 0.00 39.88 1.82
4850 4999 6.609616 AGAGGAAGAGCTAAGCTAGTACAAAT 59.390 38.462 0.00 0.00 39.88 2.32
4851 5000 5.952947 AGAGGAAGAGCTAAGCTAGTACAAA 59.047 40.000 0.00 0.00 39.88 2.83
4852 5001 5.358442 CAGAGGAAGAGCTAAGCTAGTACAA 59.642 44.000 0.00 0.00 39.88 2.41
4853 5002 4.884744 CAGAGGAAGAGCTAAGCTAGTACA 59.115 45.833 0.00 0.00 39.88 2.90
4854 5003 4.261447 GCAGAGGAAGAGCTAAGCTAGTAC 60.261 50.000 0.00 0.00 39.88 2.73
4855 5004 3.886505 GCAGAGGAAGAGCTAAGCTAGTA 59.113 47.826 0.00 0.00 39.88 1.82
4856 5005 2.693074 GCAGAGGAAGAGCTAAGCTAGT 59.307 50.000 0.00 0.00 39.88 2.57
4857 5006 2.287547 CGCAGAGGAAGAGCTAAGCTAG 60.288 54.545 0.00 0.00 39.88 3.42
4858 5007 1.678627 CGCAGAGGAAGAGCTAAGCTA 59.321 52.381 0.00 0.00 39.88 3.32
4859 5008 0.459489 CGCAGAGGAAGAGCTAAGCT 59.541 55.000 0.00 0.00 43.88 3.74
4860 5009 0.174617 ACGCAGAGGAAGAGCTAAGC 59.825 55.000 0.00 0.00 0.00 3.09
4861 5010 1.474478 TGACGCAGAGGAAGAGCTAAG 59.526 52.381 0.00 0.00 0.00 2.18
4862 5011 1.202582 GTGACGCAGAGGAAGAGCTAA 59.797 52.381 0.00 0.00 0.00 3.09
4863 5012 0.811915 GTGACGCAGAGGAAGAGCTA 59.188 55.000 0.00 0.00 0.00 3.32
4864 5013 0.897863 AGTGACGCAGAGGAAGAGCT 60.898 55.000 0.00 0.00 0.00 4.09
4865 5014 0.457681 GAGTGACGCAGAGGAAGAGC 60.458 60.000 0.00 0.00 0.00 4.09
4866 5015 0.884514 TGAGTGACGCAGAGGAAGAG 59.115 55.000 0.00 0.00 0.00 2.85
4867 5016 1.328279 TTGAGTGACGCAGAGGAAGA 58.672 50.000 0.00 0.00 0.00 2.87
4868 5017 2.376808 ATTGAGTGACGCAGAGGAAG 57.623 50.000 0.00 0.00 0.00 3.46
4869 5018 2.688507 GAATTGAGTGACGCAGAGGAA 58.311 47.619 0.00 0.00 0.00 3.36
4870 5019 1.402852 CGAATTGAGTGACGCAGAGGA 60.403 52.381 0.00 0.00 0.00 3.71
4871 5020 0.994995 CGAATTGAGTGACGCAGAGG 59.005 55.000 0.00 0.00 0.00 3.69
4872 5021 0.994995 CCGAATTGAGTGACGCAGAG 59.005 55.000 0.00 0.00 0.00 3.35
4873 5022 0.389817 CCCGAATTGAGTGACGCAGA 60.390 55.000 0.00 0.00 0.00 4.26
4874 5023 0.389817 TCCCGAATTGAGTGACGCAG 60.390 55.000 0.00 0.00 0.00 5.18
4875 5024 0.669318 GTCCCGAATTGAGTGACGCA 60.669 55.000 0.00 0.00 0.00 5.24
4876 5025 1.683790 CGTCCCGAATTGAGTGACGC 61.684 60.000 0.00 0.00 41.71 5.19
4877 5026 1.076533 CCGTCCCGAATTGAGTGACG 61.077 60.000 8.02 8.02 46.05 4.35
4878 5027 0.245539 TCCGTCCCGAATTGAGTGAC 59.754 55.000 0.00 0.00 0.00 3.67
4879 5028 0.530744 CTCCGTCCCGAATTGAGTGA 59.469 55.000 0.00 0.00 0.00 3.41
4880 5029 0.460284 CCTCCGTCCCGAATTGAGTG 60.460 60.000 0.00 0.00 0.00 3.51
4881 5030 1.614241 CCCTCCGTCCCGAATTGAGT 61.614 60.000 0.00 0.00 0.00 3.41
4882 5031 1.144057 CCCTCCGTCCCGAATTGAG 59.856 63.158 0.00 0.00 0.00 3.02
4883 5032 1.305465 TCCCTCCGTCCCGAATTGA 60.305 57.895 0.00 0.00 0.00 2.57
4884 5033 1.144057 CTCCCTCCGTCCCGAATTG 59.856 63.158 0.00 0.00 0.00 2.32
4885 5034 0.032813 TACTCCCTCCGTCCCGAATT 60.033 55.000 0.00 0.00 0.00 2.17
4886 5035 0.032813 TTACTCCCTCCGTCCCGAAT 60.033 55.000 0.00 0.00 0.00 3.34
4887 5036 0.251742 TTTACTCCCTCCGTCCCGAA 60.252 55.000 0.00 0.00 0.00 4.30
4888 5037 0.032813 ATTTACTCCCTCCGTCCCGA 60.033 55.000 0.00 0.00 0.00 5.14
4889 5038 1.339291 GTATTTACTCCCTCCGTCCCG 59.661 57.143 0.00 0.00 0.00 5.14
4890 5039 1.690893 GGTATTTACTCCCTCCGTCCC 59.309 57.143 0.00 0.00 0.00 4.46
4891 5040 2.391678 TGGTATTTACTCCCTCCGTCC 58.608 52.381 0.00 0.00 0.00 4.79
4892 5041 3.450096 ACTTGGTATTTACTCCCTCCGTC 59.550 47.826 0.00 0.00 0.00 4.79
4893 5042 3.197116 CACTTGGTATTTACTCCCTCCGT 59.803 47.826 0.00 0.00 0.00 4.69
4894 5043 3.431766 CCACTTGGTATTTACTCCCTCCG 60.432 52.174 0.00 0.00 0.00 4.63
4895 5044 3.778629 TCCACTTGGTATTTACTCCCTCC 59.221 47.826 0.00 0.00 36.34 4.30
4896 5045 4.383880 GGTCCACTTGGTATTTACTCCCTC 60.384 50.000 0.00 0.00 36.34 4.30
4897 5046 3.522343 GGTCCACTTGGTATTTACTCCCT 59.478 47.826 0.00 0.00 36.34 4.20
4898 5047 3.680754 CGGTCCACTTGGTATTTACTCCC 60.681 52.174 0.00 0.00 36.34 4.30
4899 5048 3.196254 TCGGTCCACTTGGTATTTACTCC 59.804 47.826 0.00 0.00 36.34 3.85
4900 5049 4.460948 TCGGTCCACTTGGTATTTACTC 57.539 45.455 0.00 0.00 36.34 2.59
4901 5050 5.431179 AATCGGTCCACTTGGTATTTACT 57.569 39.130 0.00 0.00 36.34 2.24
4902 5051 6.505044 AAAATCGGTCCACTTGGTATTTAC 57.495 37.500 0.00 0.00 36.34 2.01
4903 5052 8.679100 CATAAAAATCGGTCCACTTGGTATTTA 58.321 33.333 0.00 0.00 36.34 1.40
4904 5053 7.394923 TCATAAAAATCGGTCCACTTGGTATTT 59.605 33.333 0.00 0.00 36.34 1.40
4905 5054 6.887545 TCATAAAAATCGGTCCACTTGGTATT 59.112 34.615 0.00 0.00 36.34 1.89
4906 5055 6.419791 TCATAAAAATCGGTCCACTTGGTAT 58.580 36.000 0.00 0.00 36.34 2.73
4907 5056 5.806818 TCATAAAAATCGGTCCACTTGGTA 58.193 37.500 0.00 0.00 36.34 3.25
4908 5057 4.658063 TCATAAAAATCGGTCCACTTGGT 58.342 39.130 0.00 0.00 36.34 3.67
4909 5058 4.096382 CCTCATAAAAATCGGTCCACTTGG 59.904 45.833 0.00 0.00 0.00 3.61
4910 5059 4.941263 TCCTCATAAAAATCGGTCCACTTG 59.059 41.667 0.00 0.00 0.00 3.16
4917 5066 7.362660 GCCTTAGTTTTCCTCATAAAAATCGGT 60.363 37.037 0.00 0.00 30.19 4.69
4951 5100 7.880713 GGTAGATGTTTCTCTTTCTCCTTCTTT 59.119 37.037 0.00 0.00 33.17 2.52
5001 5150 2.603473 CTCACCACTCCCCGGTCA 60.603 66.667 0.00 0.00 33.25 4.02
5013 5162 5.561199 GTTTTCGAAAGATTTTGCTCACC 57.439 39.130 10.98 0.00 41.60 4.02
5029 5178 5.196156 CTTCCTCCTTGAAGGCGTTTTCG 62.196 52.174 6.30 0.00 38.45 3.46
5040 5189 2.172082 CTGATGCCATCTTCCTCCTTGA 59.828 50.000 6.21 0.00 0.00 3.02
5048 5197 1.470098 ACGTTTGCTGATGCCATCTTC 59.530 47.619 6.21 0.00 38.71 2.87
5057 5206 3.242944 CGACGATGATAACGTTTGCTGAT 59.757 43.478 5.91 0.00 43.97 2.90
5067 5216 3.489785 GGGTCAATGTCGACGATGATAAC 59.510 47.826 21.32 15.55 36.73 1.89
5070 5219 1.757118 AGGGTCAATGTCGACGATGAT 59.243 47.619 21.32 7.51 36.73 2.45
5073 5222 0.895530 ACAGGGTCAATGTCGACGAT 59.104 50.000 11.62 2.87 36.73 3.73
5079 5228 2.338500 GTCTTCGACAGGGTCAATGTC 58.662 52.381 0.00 0.00 42.94 3.06
5081 5230 1.001974 TGGTCTTCGACAGGGTCAATG 59.998 52.381 0.00 0.00 33.68 2.82
5093 5242 0.878416 TGGCGGAAAATTGGTCTTCG 59.122 50.000 0.00 0.00 0.00 3.79
5122 5271 2.795329 AGGTTTGGCAGGATAGTTGTG 58.205 47.619 0.00 0.00 0.00 3.33
5185 5335 1.463553 TTGTGTCTGCTCGGAGCTGA 61.464 55.000 28.68 28.68 45.06 4.26
5187 5337 1.005630 GTTGTGTCTGCTCGGAGCT 60.006 57.895 28.42 0.00 42.97 4.09
5210 5360 1.203187 ACTGCCAGTGGTTCCTCTCTA 60.203 52.381 11.74 0.00 0.00 2.43
5220 5370 3.411446 TGTCATTCTTTACTGCCAGTGG 58.589 45.455 7.83 4.20 0.00 4.00
5225 5375 3.065925 GCTGGATGTCATTCTTTACTGCC 59.934 47.826 0.00 0.00 0.00 4.85
5226 5376 3.065925 GGCTGGATGTCATTCTTTACTGC 59.934 47.826 0.00 0.00 0.00 4.40
5227 5377 4.264253 TGGCTGGATGTCATTCTTTACTG 58.736 43.478 0.00 0.00 0.00 2.74
5228 5378 4.018960 ACTGGCTGGATGTCATTCTTTACT 60.019 41.667 0.00 0.00 0.00 2.24
5229 5379 4.265073 ACTGGCTGGATGTCATTCTTTAC 58.735 43.478 0.00 0.00 0.00 2.01
5230 5380 4.574674 ACTGGCTGGATGTCATTCTTTA 57.425 40.909 0.00 0.00 0.00 1.85
5231 5381 3.446442 ACTGGCTGGATGTCATTCTTT 57.554 42.857 0.00 0.00 0.00 2.52
5232 5382 4.164796 TCATACTGGCTGGATGTCATTCTT 59.835 41.667 15.27 0.00 0.00 2.52
5233 5383 3.713248 TCATACTGGCTGGATGTCATTCT 59.287 43.478 15.27 0.00 0.00 2.40
5234 5384 3.812053 GTCATACTGGCTGGATGTCATTC 59.188 47.826 15.27 0.00 0.00 2.67
5235 5385 3.457380 AGTCATACTGGCTGGATGTCATT 59.543 43.478 15.27 0.00 26.79 2.57
5236 5386 3.044156 AGTCATACTGGCTGGATGTCAT 58.956 45.455 15.27 1.71 26.79 3.06
5237 5387 2.432146 GAGTCATACTGGCTGGATGTCA 59.568 50.000 15.27 0.00 28.93 3.58
5238 5388 2.224161 GGAGTCATACTGGCTGGATGTC 60.224 54.545 15.27 10.50 28.93 3.06
5239 5389 1.765314 GGAGTCATACTGGCTGGATGT 59.235 52.381 15.27 0.00 28.93 3.06
5240 5390 2.045524 AGGAGTCATACTGGCTGGATG 58.954 52.381 10.15 10.15 28.93 3.51
5241 5391 2.437281 CAAGGAGTCATACTGGCTGGAT 59.563 50.000 0.00 0.00 28.93 3.41
5242 5392 1.833630 CAAGGAGTCATACTGGCTGGA 59.166 52.381 0.00 0.00 28.93 3.86
5243 5393 1.134280 CCAAGGAGTCATACTGGCTGG 60.134 57.143 0.00 0.00 28.93 4.85
5244 5394 1.134280 CCCAAGGAGTCATACTGGCTG 60.134 57.143 0.00 0.00 28.93 4.85
5245 5395 1.207791 CCCAAGGAGTCATACTGGCT 58.792 55.000 0.00 0.00 33.30 4.75
5246 5396 1.134371 GTCCCAAGGAGTCATACTGGC 60.134 57.143 0.00 0.00 29.39 4.85
5247 5397 2.093447 GTGTCCCAAGGAGTCATACTGG 60.093 54.545 0.00 0.00 29.39 4.00
5248 5398 2.834549 AGTGTCCCAAGGAGTCATACTG 59.165 50.000 0.00 0.00 29.39 2.74
5249 5399 3.191888 AGTGTCCCAAGGAGTCATACT 57.808 47.619 0.00 0.00 29.39 2.12
5250 5400 3.260884 TCAAGTGTCCCAAGGAGTCATAC 59.739 47.826 0.00 0.00 29.39 2.39
5251 5401 3.516586 TCAAGTGTCCCAAGGAGTCATA 58.483 45.455 0.00 0.00 29.39 2.15
5252 5402 2.338809 TCAAGTGTCCCAAGGAGTCAT 58.661 47.619 0.00 0.00 29.39 3.06
5253 5403 1.801242 TCAAGTGTCCCAAGGAGTCA 58.199 50.000 0.00 0.00 29.39 3.41
5254 5404 2.551071 CCTTCAAGTGTCCCAAGGAGTC 60.551 54.545 0.00 0.00 38.15 3.36
5255 5405 1.421646 CCTTCAAGTGTCCCAAGGAGT 59.578 52.381 0.00 0.00 38.15 3.85
5256 5406 1.699634 TCCTTCAAGTGTCCCAAGGAG 59.300 52.381 0.00 0.00 39.63 3.69
5257 5407 1.699634 CTCCTTCAAGTGTCCCAAGGA 59.300 52.381 0.00 0.00 41.79 3.36
5258 5408 1.271597 CCTCCTTCAAGTGTCCCAAGG 60.272 57.143 0.00 0.00 37.36 3.61
5259 5409 1.699634 TCCTCCTTCAAGTGTCCCAAG 59.300 52.381 0.00 0.00 0.00 3.61
5260 5410 1.699634 CTCCTCCTTCAAGTGTCCCAA 59.300 52.381 0.00 0.00 0.00 4.12
5261 5411 1.352083 CTCCTCCTTCAAGTGTCCCA 58.648 55.000 0.00 0.00 0.00 4.37
5262 5412 0.035915 GCTCCTCCTTCAAGTGTCCC 60.036 60.000 0.00 0.00 0.00 4.46
5263 5413 0.687354 TGCTCCTCCTTCAAGTGTCC 59.313 55.000 0.00 0.00 0.00 4.02
5264 5414 1.609320 GGTGCTCCTCCTTCAAGTGTC 60.609 57.143 0.00 0.00 0.00 3.67
5265 5415 0.398318 GGTGCTCCTCCTTCAAGTGT 59.602 55.000 0.00 0.00 0.00 3.55
5266 5416 0.397941 TGGTGCTCCTCCTTCAAGTG 59.602 55.000 6.34 0.00 34.23 3.16
5267 5417 0.689623 CTGGTGCTCCTCCTTCAAGT 59.310 55.000 6.34 0.00 34.23 3.16
5268 5418 0.979665 TCTGGTGCTCCTCCTTCAAG 59.020 55.000 6.34 0.00 34.23 3.02
5269 5419 1.349026 CTTCTGGTGCTCCTCCTTCAA 59.651 52.381 6.34 0.00 34.23 2.69
5270 5420 0.979665 CTTCTGGTGCTCCTCCTTCA 59.020 55.000 6.34 0.00 34.23 3.02
5271 5421 0.980423 ACTTCTGGTGCTCCTCCTTC 59.020 55.000 6.34 0.00 34.23 3.46
5272 5422 2.183679 CTACTTCTGGTGCTCCTCCTT 58.816 52.381 6.34 0.00 34.23 3.36
5273 5423 1.359474 TCTACTTCTGGTGCTCCTCCT 59.641 52.381 6.34 0.00 34.23 3.69
5274 5424 1.754226 CTCTACTTCTGGTGCTCCTCC 59.246 57.143 6.34 0.00 34.23 4.30
5275 5425 1.754226 CCTCTACTTCTGGTGCTCCTC 59.246 57.143 6.34 0.00 34.23 3.71
5276 5426 1.621072 CCCTCTACTTCTGGTGCTCCT 60.621 57.143 6.34 0.00 34.23 3.69
5277 5427 0.827368 CCCTCTACTTCTGGTGCTCC 59.173 60.000 0.00 0.00 0.00 4.70
5278 5428 1.478916 GTCCCTCTACTTCTGGTGCTC 59.521 57.143 0.00 0.00 0.00 4.26
5279 5429 1.562783 GTCCCTCTACTTCTGGTGCT 58.437 55.000 0.00 0.00 0.00 4.40
5280 5430 0.537653 GGTCCCTCTACTTCTGGTGC 59.462 60.000 0.00 0.00 0.00 5.01
5281 5431 1.827969 CTGGTCCCTCTACTTCTGGTG 59.172 57.143 0.00 0.00 0.00 4.17
5282 5432 1.717077 TCTGGTCCCTCTACTTCTGGT 59.283 52.381 0.00 0.00 0.00 4.00
5283 5433 2.534042 TCTGGTCCCTCTACTTCTGG 57.466 55.000 0.00 0.00 0.00 3.86
5284 5434 3.702792 TCTTCTGGTCCCTCTACTTCTG 58.297 50.000 0.00 0.00 0.00 3.02
5285 5435 4.017037 TCATCTTCTGGTCCCTCTACTTCT 60.017 45.833 0.00 0.00 0.00 2.85
5286 5436 4.282496 TCATCTTCTGGTCCCTCTACTTC 58.718 47.826 0.00 0.00 0.00 3.01
5287 5437 4.338795 TCATCTTCTGGTCCCTCTACTT 57.661 45.455 0.00 0.00 0.00 2.24
5288 5438 4.285863 CTTCATCTTCTGGTCCCTCTACT 58.714 47.826 0.00 0.00 0.00 2.57
5289 5439 3.181470 GCTTCATCTTCTGGTCCCTCTAC 60.181 52.174 0.00 0.00 0.00 2.59
5290 5440 3.034635 GCTTCATCTTCTGGTCCCTCTA 58.965 50.000 0.00 0.00 0.00 2.43
5291 5441 1.836802 GCTTCATCTTCTGGTCCCTCT 59.163 52.381 0.00 0.00 0.00 3.69
5292 5442 1.836802 AGCTTCATCTTCTGGTCCCTC 59.163 52.381 0.00 0.00 0.00 4.30
5293 5443 1.963985 AGCTTCATCTTCTGGTCCCT 58.036 50.000 0.00 0.00 0.00 4.20
5294 5444 2.026822 TGAAGCTTCATCTTCTGGTCCC 60.027 50.000 25.16 0.00 42.15 4.46
5295 5445 3.340814 TGAAGCTTCATCTTCTGGTCC 57.659 47.619 25.16 0.00 42.15 4.46
5296 5446 4.067896 TGTTGAAGCTTCATCTTCTGGTC 58.932 43.478 28.89 11.47 42.15 4.02
5297 5447 4.070716 CTGTTGAAGCTTCATCTTCTGGT 58.929 43.478 28.89 0.00 42.15 4.00
5298 5448 4.681835 CTGTTGAAGCTTCATCTTCTGG 57.318 45.455 28.89 11.61 42.15 3.86
5311 5461 2.611224 GCCCCAAGATTTGCTGTTGAAG 60.611 50.000 0.00 0.00 29.69 3.02
5312 5462 1.344114 GCCCCAAGATTTGCTGTTGAA 59.656 47.619 0.00 0.00 29.69 2.69
5313 5463 0.968405 GCCCCAAGATTTGCTGTTGA 59.032 50.000 0.00 0.00 29.69 3.18
5314 5464 0.680618 TGCCCCAAGATTTGCTGTTG 59.319 50.000 0.00 0.00 0.00 3.33
5315 5465 0.971386 CTGCCCCAAGATTTGCTGTT 59.029 50.000 0.00 0.00 0.00 3.16
5316 5466 0.178953 ACTGCCCCAAGATTTGCTGT 60.179 50.000 0.00 0.00 0.00 4.40
5317 5467 0.245539 CACTGCCCCAAGATTTGCTG 59.754 55.000 0.00 0.00 0.00 4.41
5318 5468 0.112995 TCACTGCCCCAAGATTTGCT 59.887 50.000 0.00 0.00 0.00 3.91
5319 5469 0.968405 TTCACTGCCCCAAGATTTGC 59.032 50.000 0.00 0.00 0.00 3.68
5320 5470 2.028748 CCTTTCACTGCCCCAAGATTTG 60.029 50.000 0.00 0.00 0.00 2.32
5321 5471 2.250924 CCTTTCACTGCCCCAAGATTT 58.749 47.619 0.00 0.00 0.00 2.17
5322 5472 1.928868 CCTTTCACTGCCCCAAGATT 58.071 50.000 0.00 0.00 0.00 2.40
5323 5473 0.613012 GCCTTTCACTGCCCCAAGAT 60.613 55.000 0.00 0.00 0.00 2.40
5324 5474 1.228552 GCCTTTCACTGCCCCAAGA 60.229 57.895 0.00 0.00 0.00 3.02
5325 5475 2.278330 GGCCTTTCACTGCCCCAAG 61.278 63.158 0.00 0.00 41.97 3.61
5326 5476 2.203625 GGCCTTTCACTGCCCCAA 60.204 61.111 0.00 0.00 41.97 4.12
5331 5481 0.315251 GTTCCAAGGCCTTTCACTGC 59.685 55.000 17.61 0.28 0.00 4.40
5332 5482 1.338020 GTGTTCCAAGGCCTTTCACTG 59.662 52.381 17.61 4.54 0.00 3.66
5333 5483 1.215423 AGTGTTCCAAGGCCTTTCACT 59.785 47.619 24.41 24.41 0.00 3.41
5334 5484 1.692411 AGTGTTCCAAGGCCTTTCAC 58.308 50.000 17.61 20.53 0.00 3.18
5335 5485 2.031120 CAAGTGTTCCAAGGCCTTTCA 58.969 47.619 17.61 10.14 0.00 2.69
5336 5486 1.269778 GCAAGTGTTCCAAGGCCTTTC 60.270 52.381 17.61 7.50 0.00 2.62
5337 5487 0.752658 GCAAGTGTTCCAAGGCCTTT 59.247 50.000 17.61 0.00 0.00 3.11
5338 5488 0.396974 TGCAAGTGTTCCAAGGCCTT 60.397 50.000 13.78 13.78 0.00 4.35
5339 5489 1.109323 GTGCAAGTGTTCCAAGGCCT 61.109 55.000 0.00 0.00 0.00 5.19
5340 5490 1.109323 AGTGCAAGTGTTCCAAGGCC 61.109 55.000 0.00 0.00 0.00 5.19
5341 5491 1.537202 CTAGTGCAAGTGTTCCAAGGC 59.463 52.381 0.00 0.00 0.00 4.35
5342 5492 1.537202 GCTAGTGCAAGTGTTCCAAGG 59.463 52.381 0.00 0.00 39.41 3.61
5343 5493 2.225019 CAGCTAGTGCAAGTGTTCCAAG 59.775 50.000 0.00 0.00 42.74 3.61
5344 5494 2.158827 TCAGCTAGTGCAAGTGTTCCAA 60.159 45.455 0.00 0.00 42.74 3.53
5345 5495 1.416030 TCAGCTAGTGCAAGTGTTCCA 59.584 47.619 0.00 0.00 42.74 3.53
5346 5496 1.801178 GTCAGCTAGTGCAAGTGTTCC 59.199 52.381 0.00 0.00 42.74 3.62
5347 5497 1.801178 GGTCAGCTAGTGCAAGTGTTC 59.199 52.381 0.00 0.00 42.74 3.18
5348 5498 1.417890 AGGTCAGCTAGTGCAAGTGTT 59.582 47.619 0.00 0.00 42.74 3.32
5349 5499 1.051812 AGGTCAGCTAGTGCAAGTGT 58.948 50.000 0.00 0.00 42.74 3.55
5350 5500 2.072298 GAAGGTCAGCTAGTGCAAGTG 58.928 52.381 0.00 0.00 42.74 3.16
5351 5501 1.974236 AGAAGGTCAGCTAGTGCAAGT 59.026 47.619 0.00 0.00 42.74 3.16
5352 5502 2.740981 CAAGAAGGTCAGCTAGTGCAAG 59.259 50.000 0.00 0.00 42.74 4.01
5353 5503 2.771089 CAAGAAGGTCAGCTAGTGCAA 58.229 47.619 0.00 0.00 42.74 4.08
5354 5504 1.609061 GCAAGAAGGTCAGCTAGTGCA 60.609 52.381 0.00 0.00 42.74 4.57
5355 5505 1.082690 GCAAGAAGGTCAGCTAGTGC 58.917 55.000 0.00 0.00 40.05 4.40
5356 5506 2.028658 TCTGCAAGAAGGTCAGCTAGTG 60.029 50.000 0.00 0.00 42.31 2.74
5357 5507 2.251818 TCTGCAAGAAGGTCAGCTAGT 58.748 47.619 0.00 0.00 42.31 2.57
5389 5539 1.674221 GGTCAGCTACTGCAAGGTCTG 60.674 57.143 0.00 0.00 42.74 3.51
5390 5540 0.610687 GGTCAGCTACTGCAAGGTCT 59.389 55.000 0.00 0.00 42.74 3.85
5391 5541 0.610687 AGGTCAGCTACTGCAAGGTC 59.389 55.000 0.00 0.00 42.74 3.85
5392 5542 1.059913 AAGGTCAGCTACTGCAAGGT 58.940 50.000 0.00 0.00 42.74 3.50
5393 5543 1.446907 CAAGGTCAGCTACTGCAAGG 58.553 55.000 0.00 0.00 42.74 3.61
5394 5544 0.801251 GCAAGGTCAGCTACTGCAAG 59.199 55.000 0.00 0.00 42.74 4.01
5395 5545 0.397941 AGCAAGGTCAGCTACTGCAA 59.602 50.000 3.45 0.00 41.32 4.08
5396 5546 0.321034 CAGCAAGGTCAGCTACTGCA 60.321 55.000 3.45 0.00 41.14 4.41
5397 5547 1.023513 CCAGCAAGGTCAGCTACTGC 61.024 60.000 1.99 0.00 41.14 4.40
5398 5548 3.149899 CCAGCAAGGTCAGCTACTG 57.850 57.895 0.00 0.71 41.14 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.