AutoCloner

Multiple sequence alignment - TraesCS1B01G367800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G367800	chr1B	100.000	3171	0	0	258	3428	598426107	598429277	0.000000e+00	5856.0
1	TraesCS1B01G367800	chr1B	98.104	3007	35	7	258	3244	598379202	598382206	0.000000e+00	5217.0
2	TraesCS1B01G367800	chr1B	98.037	3006	38	6	258	3244	598394461	598397464	0.000000e+00	5204.0
3	TraesCS1B01G367800	chr1B	99.197	2241	16	2	1005	3244	598409998	598412237	0.000000e+00	4037.0
4	TraesCS1B01G367800	chr1B	96.296	270	10	0	258	527	598409718	598409987	8.730000e-121	444.0
5	TraesCS1B01G367800	chr1B	82.892	415	70	1	1786	2199	656406057	656406471	4.180000e-99	372.0
6	TraesCS1B01G367800	chr1B	86.851	289	29	2	2718	3006	656410423	656410702	7.140000e-82	315.0
7	TraesCS1B01G367800	chr1B	87.288	236	30	0	2207	2442	656409776	656410011	1.570000e-68	270.0
8	TraesCS1B01G367800	chr1B	98.765	81	1	0	3348	3428	598397463	598397543	9.910000e-31	145.0
9	TraesCS1B01G367800	chr1B	98.765	81	1	0	3348	3428	598412236	598412316	9.910000e-31	145.0
10	TraesCS1B01G367800	chr1B	97.531	81	2	0	3348	3428	598382205	598382285	4.610000e-29	139.0
11	TraesCS1B01G367800	chr1B	100.000	68	0	0	1	68	598425850	598425917	3.590000e-25	126.0
12	TraesCS1B01G367800	chr1B	98.529	68	1	0	1	68	598379100	598379167	1.670000e-23	121.0
13	TraesCS1B01G367800	chr1B	97.059	68	2	0	1	68	598394361	598394428	7.770000e-22	115.0
14	TraesCS1B01G367800	chr1B	97.059	68	2	0	1	68	598409616	598409683	7.770000e-22	115.0
15	TraesCS1B01G367800	chr1D	92.395	1407	84	10	275	1676	472185048	472183660	0.000000e+00	1984.0
16	TraesCS1B01G367800	chr1D	94.366	710	33	3	1757	2459	472183187	472182478	0.000000e+00	1083.0
17	TraesCS1B01G367800	chr1D	97.030	101	3	0	2617	2717	472182344	472182244	1.640000e-38	171.0
18	TraesCS1B01G367800	chr1D	98.113	53	0	1	380	432	472184911	472184860	1.310000e-14	91.6
19	TraesCS1B01G367800	chr4A	92.102	1418	69	6	880	2287	598242217	598240833	0.000000e+00	1958.0
20	TraesCS1B01G367800	chr4A	88.857	350	29	3	2657	3006	598240017	598239678	4.090000e-114	422.0
21	TraesCS1B01G367800	chr4A	91.336	277	20	1	2277	2553	598240456	598240184	3.230000e-100	375.0
22	TraesCS1B01G367800	chr4A	92.683	123	6	3	3231	3353	557549908	557549789	1.260000e-39	174.0
23	TraesCS1B01G367800	chr3B	97.368	114	3	0	3236	3349	15806631	15806518	9.710000e-46	195.0
24	TraesCS1B01G367800	chr3B	92.800	125	8	1	3229	3353	578976383	578976260	2.720000e-41	180.0
25	TraesCS1B01G367800	chr5D	97.321	112	3	0	3243	3354	491692748	491692859	1.260000e-44	191.0
26	TraesCS1B01G367800	chr7D	95.041	121	4	2	3233	3352	6800346	6800227	4.520000e-44	189.0
27	TraesCS1B01G367800	chr4B	98.131	107	2	0	3243	3349	530471526	530471420	1.620000e-43	187.0
28	TraesCS1B01G367800	chr7A	94.783	115	6	0	3242	3356	381254030	381253916	2.720000e-41	180.0
29	TraesCS1B01G367800	chr5B	94.783	115	6	0	3235	3349	666202107	666201993	2.720000e-41	180.0
30	TraesCS1B01G367800	chr5B	92.623	122	8	1	3232	3353	90515271	90515391	1.260000e-39	174.0
31	TraesCS1B01G367800	chr2D	78.764	259	55	0	1078	1336	6905152	6904894	1.260000e-39	174.0
32	TraesCS1B01G367800	chr2D	96.364	55	0	2	381	434	629736414	629736467	4.710000e-14	89.8
33	TraesCS1B01G367800	chr2D	92.453	53	3	1	380	432	560949080	560949029	1.320000e-09	75.0
34	TraesCS1B01G367800	chr6A	78.281	221	42	2	1840	2054	590787	591007	1.660000e-28	137.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G367800	chr1B	598425850	598429277	3427	False	2991.000000	5856	100.000000	1	3428	2	chr1B.!!$F4	3427
1	TraesCS1B01G367800	chr1B	598379100	598382285	3185	False	1825.666667	5217	98.054667	1	3428	3	chr1B.!!$F1	3427
2	TraesCS1B01G367800	chr1B	598394361	598397543	3182	False	1821.333333	5204	97.953667	1	3428	3	chr1B.!!$F2	3427
3	TraesCS1B01G367800	chr1B	598409616	598412316	2700	False	1185.250000	4037	97.829250	1	3428	4	chr1B.!!$F3	3427
4	TraesCS1B01G367800	chr1B	656406057	656410702	4645	False	319.000000	372	85.677000	1786	3006	3	chr1B.!!$F5	1220
5	TraesCS1B01G367800	chr1D	472182244	472185048	2804	True	832.400000	1984	95.476000	275	2717	4	chr1D.!!$R1	2442
6	TraesCS1B01G367800	chr4A	598239678	598242217	2539	True	918.333333	1958	90.765000	880	3006	3	chr4A.!!$R2	2126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
971	1000	0.034059	ATAGCCATAGTGCGACTGCC	59.966	55.0	0.0	0.0	41.78	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2938	7225	7.501225	ACCCTATTTCTGTTAATCATTTACCCG	59.499	37.037	0.0	0.0	0.0	5.28	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
341	342	4.142249	CCGTTGGTCACTTTTTCCTTCTTT	60.142	41.667	0.00	0.00	0.00	2.52
440	441	6.672266	TTATCTATCTTAGGGTGAAGCCAG	57.328	41.667	0.71	0.00	39.65	4.85
447	448	2.359975	GGTGAAGCCAGAACCCCG	60.360	66.667	0.00	0.00	37.17	5.73
857	858	6.039829	CCAAAAAGGGTAGCATCTTCTTATCC	59.960	42.308	0.00	0.00	0.00	2.59
858	859	5.975988	AAAGGGTAGCATCTTCTTATCCA	57.024	39.130	0.00	0.00	0.00	3.41
859	860	4.965200	AGGGTAGCATCTTCTTATCCAC	57.035	45.455	0.00	0.00	0.00	4.02
864	884	4.264460	AGCATCTTCTTATCCACGATCC	57.736	45.455	0.00	0.00	0.00	3.36
971	1000	0.034059	ATAGCCATAGTGCGACTGCC	59.966	55.000	0.00	0.00	41.78	4.85
2471	6596	4.646492	ACAAGATTGTTGCCTATGGATTCC	59.354	41.667	0.00	0.00	38.47	3.01
2647	6853	5.350365	ACTTATGCATTGCTTCATTGCTTTG	59.650	36.000	3.54	7.46	40.16	2.77
2819	7106	3.257127	GGTTCGGGATCAATCAACCAAAA	59.743	43.478	9.20	0.00	37.13	2.44
2938	7225	4.260538	CCGTACGTACTACATTGAGAGGTC	60.261	50.000	22.55	0.00	0.00	3.85
2994	7281	9.756461	CTAAAATCGCATATCATTGAGATTCAG	57.244	33.333	4.33	2.57	42.77	3.02
3018	7305	2.234908	AGCATCTCACTGGTGTTAGGAC	59.765	50.000	0.53	0.00	0.00	3.85
3047	7334	9.217336	TCTAGCCACATCATATGTCCATATAAT	57.783	33.333	1.90	0.00	42.70	1.28
3144	7432	4.485163	CACAATACATGTCGTCTCTGTGA	58.515	43.478	0.00	0.00	41.46	3.58
3169	7457	7.945134	AGTAAATTAATTGAAGCTGCCCTATG	58.055	34.615	0.39	0.00	0.00	2.23
3236	7524	2.684374	TGGCATCGAGTGAAATCCATTG	59.316	45.455	0.00	0.00	0.00	2.82
3243	7531	5.912892	TCGAGTGAAATCCATTGTATGCTA	58.087	37.500	0.00	0.00	0.00	3.49
3244	7532	5.753438	TCGAGTGAAATCCATTGTATGCTAC	59.247	40.000	0.00	0.00	0.00	3.58
3245	7533	5.755375	CGAGTGAAATCCATTGTATGCTACT	59.245	40.000	0.00	0.00	0.00	2.57
3246	7534	6.074088	CGAGTGAAATCCATTGTATGCTACTC	60.074	42.308	0.00	0.00	0.00	2.59
3247	7535	6.058183	AGTGAAATCCATTGTATGCTACTCC	58.942	40.000	0.00	0.00	0.00	3.85
3248	7536	5.239525	GTGAAATCCATTGTATGCTACTCCC	59.760	44.000	0.00	0.00	0.00	4.30
3249	7537	5.132648	TGAAATCCATTGTATGCTACTCCCT	59.867	40.000	0.00	0.00	0.00	4.20
3250	7538	4.899352	ATCCATTGTATGCTACTCCCTC	57.101	45.455	0.00	0.00	0.00	4.30
3251	7539	2.972713	TCCATTGTATGCTACTCCCTCC	59.027	50.000	0.00	0.00	0.00	4.30
3252	7540	2.705658	CCATTGTATGCTACTCCCTCCA	59.294	50.000	0.00	0.00	0.00	3.86
3253	7541	3.328931	CCATTGTATGCTACTCCCTCCAT	59.671	47.826	0.00	0.00	0.00	3.41
3254	7542	4.202503	CCATTGTATGCTACTCCCTCCATT	60.203	45.833	0.00	0.00	0.00	3.16
3255	7543	4.689612	TTGTATGCTACTCCCTCCATTC	57.310	45.455	0.00	0.00	0.00	2.67
3256	7544	2.972713	TGTATGCTACTCCCTCCATTCC	59.027	50.000	0.00	0.00	0.00	3.01
3257	7545	1.051812	ATGCTACTCCCTCCATTCCG	58.948	55.000	0.00	0.00	0.00	4.30
3258	7546	0.032515	TGCTACTCCCTCCATTCCGA	60.033	55.000	0.00	0.00	0.00	4.55
3259	7547	1.120530	GCTACTCCCTCCATTCCGAA	58.879	55.000	0.00	0.00	0.00	4.30
3260	7548	1.694696	GCTACTCCCTCCATTCCGAAT	59.305	52.381	0.00	0.00	0.00	3.34
3261	7549	2.104963	GCTACTCCCTCCATTCCGAATT	59.895	50.000	0.00	0.00	0.00	2.17
3262	7550	3.323979	GCTACTCCCTCCATTCCGAATTA	59.676	47.826	0.00	0.00	0.00	1.40
3263	7551	3.840124	ACTCCCTCCATTCCGAATTAC	57.160	47.619	0.00	0.00	0.00	1.89
3264	7552	3.385115	ACTCCCTCCATTCCGAATTACT	58.615	45.455	0.00	0.00	0.00	2.24
3265	7553	3.780850	ACTCCCTCCATTCCGAATTACTT	59.219	43.478	0.00	0.00	0.00	2.24
3266	7554	4.130118	CTCCCTCCATTCCGAATTACTTG	58.870	47.826	0.00	0.00	0.00	3.16
3267	7555	3.521937	TCCCTCCATTCCGAATTACTTGT	59.478	43.478	0.00	0.00	0.00	3.16
3268	7556	3.877508	CCCTCCATTCCGAATTACTTGTC	59.122	47.826	0.00	0.00	0.00	3.18
3269	7557	3.555956	CCTCCATTCCGAATTACTTGTCG	59.444	47.826	0.00	0.00	37.01	4.35
3270	7558	2.933906	TCCATTCCGAATTACTTGTCGC	59.066	45.455	0.00	0.00	35.93	5.19
3271	7559	2.675844	CCATTCCGAATTACTTGTCGCA	59.324	45.455	0.00	0.00	35.93	5.10
3272	7560	3.312421	CCATTCCGAATTACTTGTCGCAT	59.688	43.478	0.00	0.00	35.93	4.73
3273	7561	4.274069	CATTCCGAATTACTTGTCGCATG	58.726	43.478	0.00	0.00	35.93	4.06
3274	7562	2.967362	TCCGAATTACTTGTCGCATGT	58.033	42.857	0.00	4.39	35.93	3.21
3275	7563	4.112716	TCCGAATTACTTGTCGCATGTA	57.887	40.909	0.00	2.87	35.93	2.29
3276	7564	4.689071	TCCGAATTACTTGTCGCATGTAT	58.311	39.130	0.00	0.00	35.93	2.29
3277	7565	4.506288	TCCGAATTACTTGTCGCATGTATG	59.494	41.667	0.00	0.00	35.93	2.39
3278	7566	4.318760	CCGAATTACTTGTCGCATGTATGG	60.319	45.833	0.00	4.42	35.93	2.74
3279	7567	4.506288	CGAATTACTTGTCGCATGTATGGA	59.494	41.667	0.00	0.00	0.00	3.41
3280	7568	5.177511	CGAATTACTTGTCGCATGTATGGAT	59.822	40.000	0.00	0.00	0.00	3.41
3281	7569	5.929697	ATTACTTGTCGCATGTATGGATG	57.070	39.130	0.00	0.00	0.00	3.51
3282	7570	3.266510	ACTTGTCGCATGTATGGATGT	57.733	42.857	0.00	0.00	0.00	3.06
3283	7571	4.400529	ACTTGTCGCATGTATGGATGTA	57.599	40.909	0.00	0.00	0.00	2.29
3284	7572	4.960938	ACTTGTCGCATGTATGGATGTAT	58.039	39.130	0.00	0.00	0.00	2.29
3285	7573	4.991056	ACTTGTCGCATGTATGGATGTATC	59.009	41.667	0.00	0.00	0.00	2.24
3286	7574	4.871933	TGTCGCATGTATGGATGTATCT	57.128	40.909	0.00	0.00	0.00	1.98
3287	7575	5.975693	TGTCGCATGTATGGATGTATCTA	57.024	39.130	0.00	0.00	0.00	1.98
3288	7576	5.954335	TGTCGCATGTATGGATGTATCTAG	58.046	41.667	0.00	0.00	0.00	2.43
3289	7577	5.710099	TGTCGCATGTATGGATGTATCTAGA	59.290	40.000	0.00	0.00	0.00	2.43
3290	7578	6.378280	TGTCGCATGTATGGATGTATCTAGAT	59.622	38.462	10.73	10.73	0.00	1.98
3291	7579	6.694844	GTCGCATGTATGGATGTATCTAGATG	59.305	42.308	15.79	0.00	0.00	2.90
3292	7580	6.378280	TCGCATGTATGGATGTATCTAGATGT	59.622	38.462	15.79	1.25	0.00	3.06
3293	7581	7.556275	TCGCATGTATGGATGTATCTAGATGTA	59.444	37.037	15.79	4.44	0.00	2.29
3294	7582	8.355913	CGCATGTATGGATGTATCTAGATGTAT	58.644	37.037	15.79	9.11	0.00	2.29
3321	7609	9.547753	TTTAGTTCTAGATACATCCATTTCAGC	57.452	33.333	0.00	0.00	0.00	4.26
3322	7610	6.219473	AGTTCTAGATACATCCATTTCAGCG	58.781	40.000	0.00	0.00	0.00	5.18
3323	7611	6.040955	AGTTCTAGATACATCCATTTCAGCGA	59.959	38.462	0.00	0.00	0.00	4.93
3324	7612	5.773575	TCTAGATACATCCATTTCAGCGAC	58.226	41.667	0.00	0.00	0.00	5.19
3325	7613	3.384668	AGATACATCCATTTCAGCGACG	58.615	45.455	0.00	0.00	0.00	5.12
3326	7614	2.951457	TACATCCATTTCAGCGACGA	57.049	45.000	0.00	0.00	0.00	4.20
3327	7615	1.645034	ACATCCATTTCAGCGACGAG	58.355	50.000	0.00	0.00	0.00	4.18
3328	7616	1.066858	ACATCCATTTCAGCGACGAGT	60.067	47.619	0.00	0.00	0.00	4.18
3329	7617	2.165641	ACATCCATTTCAGCGACGAGTA	59.834	45.455	0.00	0.00	0.00	2.59
3330	7618	3.186909	CATCCATTTCAGCGACGAGTAA	58.813	45.455	0.00	0.00	0.00	2.24
3331	7619	3.520290	TCCATTTCAGCGACGAGTAAT	57.480	42.857	0.00	0.00	0.00	1.89
3332	7620	3.857052	TCCATTTCAGCGACGAGTAATT	58.143	40.909	0.00	0.00	0.00	1.40
3333	7621	4.250464	TCCATTTCAGCGACGAGTAATTT	58.750	39.130	0.00	0.00	0.00	1.82
3334	7622	4.092821	TCCATTTCAGCGACGAGTAATTTG	59.907	41.667	0.00	0.00	0.00	2.32
3335	7623	4.334443	CATTTCAGCGACGAGTAATTTGG	58.666	43.478	0.00	0.00	0.00	3.28
3336	7624	2.004583	TCAGCGACGAGTAATTTGGG	57.995	50.000	0.00	0.00	0.00	4.12
3337	7625	1.546923	TCAGCGACGAGTAATTTGGGA	59.453	47.619	0.00	0.00	0.00	4.37
3338	7626	1.659098	CAGCGACGAGTAATTTGGGAC	59.341	52.381	0.00	0.00	0.00	4.46
3339	7627	0.643820	GCGACGAGTAATTTGGGACG	59.356	55.000	0.00	0.00	0.00	4.79
3340	7628	1.274596	CGACGAGTAATTTGGGACGG	58.725	55.000	0.00	0.00	0.00	4.79
3341	7629	1.135315	CGACGAGTAATTTGGGACGGA	60.135	52.381	0.00	0.00	0.00	4.69
3342	7630	2.537401	GACGAGTAATTTGGGACGGAG	58.463	52.381	0.00	0.00	0.00	4.63
3343	7631	1.206371	ACGAGTAATTTGGGACGGAGG	59.794	52.381	0.00	0.00	0.00	4.30
3344	7632	1.472728	CGAGTAATTTGGGACGGAGGG	60.473	57.143	0.00	0.00	0.00	4.30
3345	7633	0.916809	AGTAATTTGGGACGGAGGGG	59.083	55.000	0.00	0.00	0.00	4.79
3346	7634	0.106868	GTAATTTGGGACGGAGGGGG	60.107	60.000	0.00	0.00	0.00	5.40
3347	7635	0.550638	TAATTTGGGACGGAGGGGGT	60.551	55.000	0.00	0.00	0.00	4.95
3381	7669	5.214417	CGTGTTTGCTGAATCAATCAAAGA	58.786	37.500	9.55	6.88	37.67	2.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	4.511454	CCACCTCGTTAATCATGTACCATG	59.489	45.833	0.00	0.00	0.00	3.66
318	319	2.949644	AGAAGGAAAAAGTGACCAACGG	59.050	45.455	0.00	0.00	0.00	4.44
341	342	0.034896	GCACTCGGGAAGAAGGAACA	59.965	55.000	0.00	0.00	0.00	3.18
400	401	0.780637	TAATGGGGTTGTGGCTTCCA	59.219	50.000	0.00	0.00	0.00	3.53
440	441	5.311265	CCCCTAAGATAAATAACGGGGTTC	58.689	45.833	0.00	0.00	43.84	3.62
447	448	4.417854	ACCCCCACCCCTAAGATAAATAAC	59.582	45.833	0.00	0.00	0.00	1.89
832	833	6.039829	GGATAAGAAGATGCTACCCTTTTTGG	59.960	42.308	0.00	0.00	0.00	3.28
864	884	0.942962	GGCAATGCTCTTGATCGAGG	59.057	55.000	10.19	2.47	0.00	4.63
2647	6853	7.548196	TTAGACACGGGATATGACATTTTTC	57.452	36.000	0.00	0.00	0.00	2.29
2819	7106	8.352942	CCAAGCTGTCTTATTTAGTCTTTTTGT	58.647	33.333	0.00	0.00	0.00	2.83
2938	7225	7.501225	ACCCTATTTCTGTTAATCATTTACCCG	59.499	37.037	0.00	0.00	0.00	5.28
2994	7281	3.686726	CCTAACACCAGTGAGATGCTTTC	59.313	47.826	4.48	0.00	0.00	2.62
3018	7305	5.554070	TGGACATATGATGTGGCTAGAATG	58.446	41.667	10.38	0.00	45.03	2.67
3047	7334	3.965379	TTGCGGGTCTGAAATACTGTA	57.035	42.857	0.00	0.00	0.00	2.74
3144	7432	7.561356	ACATAGGGCAGCTTCAATTAATTTACT	59.439	33.333	0.00	0.00	0.00	2.24
3236	7524	2.028930	CGGAATGGAGGGAGTAGCATAC	60.029	54.545	0.00	0.00	43.47	2.39
3243	7531	3.385115	AGTAATTCGGAATGGAGGGAGT	58.615	45.455	3.59	0.00	0.00	3.85
3244	7532	4.130118	CAAGTAATTCGGAATGGAGGGAG	58.870	47.826	3.59	0.00	0.00	4.30
3245	7533	3.521937	ACAAGTAATTCGGAATGGAGGGA	59.478	43.478	3.59	0.00	0.00	4.20
3246	7534	3.877508	GACAAGTAATTCGGAATGGAGGG	59.122	47.826	3.59	0.00	0.00	4.30
3247	7535	3.555956	CGACAAGTAATTCGGAATGGAGG	59.444	47.826	3.59	0.00	0.00	4.30
3248	7536	3.001330	GCGACAAGTAATTCGGAATGGAG	59.999	47.826	3.59	0.00	35.73	3.86
3249	7537	2.933906	GCGACAAGTAATTCGGAATGGA	59.066	45.455	3.59	0.00	35.73	3.41
3250	7538	2.675844	TGCGACAAGTAATTCGGAATGG	59.324	45.455	3.59	0.00	35.73	3.16
3251	7539	4.201812	ACATGCGACAAGTAATTCGGAATG	60.202	41.667	3.59	0.00	39.13	2.67
3252	7540	3.938963	ACATGCGACAAGTAATTCGGAAT	59.061	39.130	0.00	0.00	39.13	3.01
3253	7541	3.331150	ACATGCGACAAGTAATTCGGAA	58.669	40.909	0.00	0.00	39.13	4.30
3254	7542	2.967362	ACATGCGACAAGTAATTCGGA	58.033	42.857	0.00	0.00	40.02	4.55
3255	7543	4.318760	CCATACATGCGACAAGTAATTCGG	60.319	45.833	0.00	0.00	35.73	4.30
3256	7544	4.506288	TCCATACATGCGACAAGTAATTCG	59.494	41.667	0.00	0.00	38.31	3.34
3257	7545	5.984233	TCCATACATGCGACAAGTAATTC	57.016	39.130	0.00	0.00	0.00	2.17
3258	7546	5.822519	ACATCCATACATGCGACAAGTAATT	59.177	36.000	0.00	0.00	0.00	1.40
3259	7547	5.368145	ACATCCATACATGCGACAAGTAAT	58.632	37.500	0.00	0.00	0.00	1.89
3260	7548	4.765273	ACATCCATACATGCGACAAGTAA	58.235	39.130	0.00	0.00	0.00	2.24
3261	7549	4.400529	ACATCCATACATGCGACAAGTA	57.599	40.909	0.00	0.00	0.00	2.24
3262	7550	3.266510	ACATCCATACATGCGACAAGT	57.733	42.857	0.00	0.00	0.00	3.16
3263	7551	5.233225	AGATACATCCATACATGCGACAAG	58.767	41.667	0.00	0.00	0.00	3.16
3264	7552	5.213891	AGATACATCCATACATGCGACAA	57.786	39.130	0.00	0.00	0.00	3.18
3265	7553	4.871933	AGATACATCCATACATGCGACA	57.128	40.909	0.00	0.00	0.00	4.35
3266	7554	6.196079	TCTAGATACATCCATACATGCGAC	57.804	41.667	0.00	0.00	0.00	5.19
3267	7555	6.378280	ACATCTAGATACATCCATACATGCGA	59.622	38.462	4.54	0.00	0.00	5.10
3268	7556	6.567959	ACATCTAGATACATCCATACATGCG	58.432	40.000	4.54	0.00	0.00	4.73
3295	7583	9.547753	GCTGAAATGGATGTATCTAGAACTAAA	57.452	33.333	0.00	0.00	0.00	1.85
3296	7584	7.867909	CGCTGAAATGGATGTATCTAGAACTAA	59.132	37.037	0.00	0.00	0.00	2.24
3297	7585	7.230712	TCGCTGAAATGGATGTATCTAGAACTA	59.769	37.037	0.00	0.00	0.00	2.24
3298	7586	6.040955	TCGCTGAAATGGATGTATCTAGAACT	59.959	38.462	0.00	0.00	0.00	3.01
3299	7587	6.144724	GTCGCTGAAATGGATGTATCTAGAAC	59.855	42.308	0.00	0.00	0.00	3.01
3300	7588	6.216569	GTCGCTGAAATGGATGTATCTAGAA	58.783	40.000	0.00	0.00	0.00	2.10
3301	7589	5.562890	CGTCGCTGAAATGGATGTATCTAGA	60.563	44.000	0.00	0.00	0.00	2.43
3302	7590	4.618912	CGTCGCTGAAATGGATGTATCTAG	59.381	45.833	0.00	0.00	0.00	2.43
3303	7591	4.277423	TCGTCGCTGAAATGGATGTATCTA	59.723	41.667	0.00	0.00	0.00	1.98
3304	7592	3.068165	TCGTCGCTGAAATGGATGTATCT	59.932	43.478	0.00	0.00	0.00	1.98
3305	7593	3.381045	TCGTCGCTGAAATGGATGTATC	58.619	45.455	0.00	0.00	0.00	2.24
3306	7594	3.181475	ACTCGTCGCTGAAATGGATGTAT	60.181	43.478	0.00	0.00	0.00	2.29
3307	7595	2.165641	ACTCGTCGCTGAAATGGATGTA	59.834	45.455	0.00	0.00	0.00	2.29
3308	7596	1.066858	ACTCGTCGCTGAAATGGATGT	60.067	47.619	0.00	0.00	0.00	3.06
3309	7597	1.645034	ACTCGTCGCTGAAATGGATG	58.355	50.000	0.00	0.00	0.00	3.51
3310	7598	3.520290	TTACTCGTCGCTGAAATGGAT	57.480	42.857	0.00	0.00	0.00	3.41
3311	7599	3.520290	ATTACTCGTCGCTGAAATGGA	57.480	42.857	0.00	0.00	0.00	3.41
3312	7600	4.334443	CAAATTACTCGTCGCTGAAATGG	58.666	43.478	0.00	0.00	0.00	3.16
3313	7601	4.334443	CCAAATTACTCGTCGCTGAAATG	58.666	43.478	0.00	0.00	0.00	2.32
3314	7602	3.374058	CCCAAATTACTCGTCGCTGAAAT	59.626	43.478	0.00	0.00	0.00	2.17
3315	7603	2.739913	CCCAAATTACTCGTCGCTGAAA	59.260	45.455	0.00	0.00	0.00	2.69
3316	7604	2.028839	TCCCAAATTACTCGTCGCTGAA	60.029	45.455	0.00	0.00	0.00	3.02
3317	7605	1.546923	TCCCAAATTACTCGTCGCTGA	59.453	47.619	0.00	0.00	0.00	4.26
3318	7606	1.659098	GTCCCAAATTACTCGTCGCTG	59.341	52.381	0.00	0.00	0.00	5.18
3319	7607	1.734707	CGTCCCAAATTACTCGTCGCT	60.735	52.381	0.00	0.00	0.00	4.93
3320	7608	0.643820	CGTCCCAAATTACTCGTCGC	59.356	55.000	0.00	0.00	0.00	5.19
3321	7609	1.135315	TCCGTCCCAAATTACTCGTCG	60.135	52.381	0.00	0.00	0.00	5.12
3322	7610	2.537401	CTCCGTCCCAAATTACTCGTC	58.463	52.381	0.00	0.00	0.00	4.20
3323	7611	1.206371	CCTCCGTCCCAAATTACTCGT	59.794	52.381	0.00	0.00	0.00	4.18
3324	7612	1.472728	CCCTCCGTCCCAAATTACTCG	60.473	57.143	0.00	0.00	0.00	4.18
3325	7613	1.134189	CCCCTCCGTCCCAAATTACTC	60.134	57.143	0.00	0.00	0.00	2.59
3326	7614	0.916809	CCCCTCCGTCCCAAATTACT	59.083	55.000	0.00	0.00	0.00	2.24
3327	7615	0.106868	CCCCCTCCGTCCCAAATTAC	60.107	60.000	0.00	0.00	0.00	1.89
3328	7616	0.550638	ACCCCCTCCGTCCCAAATTA	60.551	55.000	0.00	0.00	0.00	1.40
3329	7617	0.550638	TACCCCCTCCGTCCCAAATT	60.551	55.000	0.00	0.00	0.00	1.82
3330	7618	0.986550	CTACCCCCTCCGTCCCAAAT	60.987	60.000	0.00	0.00	0.00	2.32
3331	7619	1.614226	CTACCCCCTCCGTCCCAAA	60.614	63.158	0.00	0.00	0.00	3.28
3332	7620	2.039951	CTACCCCCTCCGTCCCAA	59.960	66.667	0.00	0.00	0.00	4.12
3333	7621	2.109494	TTTCTACCCCCTCCGTCCCA	62.109	60.000	0.00	0.00	0.00	4.37
3334	7622	0.693430	ATTTCTACCCCCTCCGTCCC	60.693	60.000	0.00	0.00	0.00	4.46
3335	7623	1.134189	CAATTTCTACCCCCTCCGTCC	60.134	57.143	0.00	0.00	0.00	4.79
3336	7624	1.134189	CCAATTTCTACCCCCTCCGTC	60.134	57.143	0.00	0.00	0.00	4.79
3337	7625	0.916809	CCAATTTCTACCCCCTCCGT	59.083	55.000	0.00	0.00	0.00	4.69
3338	7626	0.465642	GCCAATTTCTACCCCCTCCG	60.466	60.000	0.00	0.00	0.00	4.63
3339	7627	0.106167	GGCCAATTTCTACCCCCTCC	60.106	60.000	0.00	0.00	0.00	4.30
3340	7628	0.465642	CGGCCAATTTCTACCCCCTC	60.466	60.000	2.24	0.00	0.00	4.30
3341	7629	1.212250	ACGGCCAATTTCTACCCCCT	61.212	55.000	2.24	0.00	0.00	4.79
3342	7630	1.035385	CACGGCCAATTTCTACCCCC	61.035	60.000	2.24	0.00	0.00	5.40
3343	7631	0.323087	ACACGGCCAATTTCTACCCC	60.323	55.000	2.24	0.00	0.00	4.95
3344	7632	1.541379	AACACGGCCAATTTCTACCC	58.459	50.000	2.24	0.00	0.00	3.69
3345	7633	2.924880	GCAAACACGGCCAATTTCTACC	60.925	50.000	2.24	0.00	0.00	3.18
3346	7634	2.030274	AGCAAACACGGCCAATTTCTAC	60.030	45.455	2.24	0.00	0.00	2.59
3347	7635	2.030363	CAGCAAACACGGCCAATTTCTA	60.030	45.455	2.24	0.00	0.00	2.10
3381	7669	5.862323	CCTAGATAATAAACGCGTACATGCT	59.138	40.000	14.46	7.18	0.00	3.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.