Multiple sequence alignment - TraesCS1B01G367400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G367400 chr1B 100.000 4109 0 0 1 4109 598189659 598193767 0.000000e+00 7589.0
1 TraesCS1B01G367400 chr1B 84.868 304 42 3 336 636 154638069 154638371 1.860000e-78 303.0
2 TraesCS1B01G367400 chr1B 90.769 195 14 4 145 336 249023306 249023113 1.470000e-64 257.0
3 TraesCS1B01G367400 chr1B 83.163 196 28 5 143 335 604640243 604640436 1.520000e-39 174.0
4 TraesCS1B01G367400 chr1D 93.552 3412 153 29 739 4105 440718171 440721560 0.000000e+00 5020.0
5 TraesCS1B01G367400 chr1D 94.416 197 7 3 143 336 97779887 97780082 2.400000e-77 300.0
6 TraesCS1B01G367400 chr1D 89.189 148 6 5 604 751 440716887 440717024 4.220000e-40 176.0
7 TraesCS1B01G367400 chr1D 90.164 61 4 2 33 92 440716652 440716711 1.220000e-10 78.7
8 TraesCS1B01G367400 chr1A 93.625 3106 144 27 715 3799 537348093 537345021 0.000000e+00 4590.0
9 TraesCS1B01G367400 chr1A 79.137 139 19 3 1 130 564343099 564342962 2.030000e-13 87.9
10 TraesCS1B01G367400 chr6D 87.240 2210 239 27 994 3171 36252664 36254862 0.000000e+00 2479.0
11 TraesCS1B01G367400 chr5D 87.414 2169 231 28 992 3147 406415451 406417590 0.000000e+00 2455.0
12 TraesCS1B01G367400 chr5D 82.372 312 51 3 334 642 487890126 487890436 6.770000e-68 268.0
13 TraesCS1B01G367400 chr5B 87.236 2178 231 27 992 3147 487437651 487439803 0.000000e+00 2438.0
14 TraesCS1B01G367400 chr5B 87.457 582 64 5 999 1580 505378335 505378907 0.000000e+00 662.0
15 TraesCS1B01G367400 chr5B 92.754 69 5 0 75 143 580741912 580741844 2.610000e-17 100.0
16 TraesCS1B01G367400 chr6B 86.466 2261 249 36 961 3176 75941493 75943741 0.000000e+00 2427.0
17 TraesCS1B01G367400 chr6B 77.114 201 33 11 144 336 95821278 95821083 2.020000e-18 104.0
18 TraesCS1B01G367400 chr5A 86.896 2152 241 25 998 3132 512059558 512061685 0.000000e+00 2374.0
19 TraesCS1B01G367400 chr5A 93.488 215 5 6 144 355 660768104 660767896 1.110000e-80 311.0
20 TraesCS1B01G367400 chr5A 78.173 197 37 5 144 336 651614537 651614731 2.010000e-23 121.0
21 TraesCS1B01G367400 chr5A 91.781 73 6 0 71 143 593243854 593243782 7.270000e-18 102.0
22 TraesCS1B01G367400 chr6A 86.198 2217 259 29 994 3176 40297969 40300172 0.000000e+00 2355.0
23 TraesCS1B01G367400 chr4B 88.383 835 40 15 2680 3492 9395913 9396712 0.000000e+00 952.0
24 TraesCS1B01G367400 chr4B 91.268 355 19 7 3659 4006 9396716 9397065 1.340000e-129 473.0
25 TraesCS1B01G367400 chr4B 79.803 203 34 6 138 336 581523391 581523590 1.540000e-29 141.0
26 TraesCS1B01G367400 chr4B 86.957 92 12 0 52 143 623175716 623175807 2.020000e-18 104.0
27 TraesCS1B01G367400 chr4B 91.781 73 6 0 71 143 637574419 637574491 7.270000e-18 102.0
28 TraesCS1B01G367400 chr4A 88.336 703 41 14 2796 3492 114529747 114530414 0.000000e+00 806.0
29 TraesCS1B01G367400 chr4A 91.573 356 17 6 3659 4006 114530418 114530768 2.870000e-131 479.0
30 TraesCS1B01G367400 chr7D 85.081 677 78 16 980 1648 603583289 603583950 0.000000e+00 669.0
31 TraesCS1B01G367400 chr7D 82.736 307 47 6 340 642 184818214 184817910 6.770000e-68 268.0
32 TraesCS1B01G367400 chr3D 86.928 306 35 4 341 642 303791613 303791309 5.090000e-89 339.0
33 TraesCS1B01G367400 chr3D 83.594 128 12 2 1 119 609881409 609881282 1.210000e-20 111.0
34 TraesCS1B01G367400 chr3B 85.621 306 40 3 340 642 201992506 201992810 6.630000e-83 318.0
35 TraesCS1B01G367400 chr3B 89.231 195 17 3 137 328 371334158 371334351 1.480000e-59 241.0
36 TraesCS1B01G367400 chr3B 95.139 144 4 3 3863 4006 66707822 66707962 1.490000e-54 224.0
37 TraesCS1B01G367400 chr7A 83.140 344 53 4 1028 1370 696230024 696229685 3.990000e-80 309.0
38 TraesCS1B01G367400 chr2B 84.868 304 44 1 341 642 558046282 558046585 5.160000e-79 305.0
39 TraesCS1B01G367400 chr2B 84.127 126 11 2 1 117 779957316 779957441 3.360000e-21 113.0
40 TraesCS1B01G367400 chr2D 83.448 290 46 1 353 640 423273240 423272951 6.770000e-68 268.0
41 TraesCS1B01G367400 chr2D 84.173 139 11 4 1 130 204990184 204990320 1.550000e-24 124.0
42 TraesCS1B01G367400 chrUn 82.274 299 49 4 347 642 93087563 93087266 5.270000e-64 255.0
43 TraesCS1B01G367400 chr2A 81.759 307 54 1 338 642 276305953 276306259 5.270000e-64 255.0
44 TraesCS1B01G367400 chr2A 86.813 91 12 0 52 142 187302855 187302945 7.270000e-18 102.0
45 TraesCS1B01G367400 chr3A 79.803 203 30 11 142 338 376450235 376450432 1.990000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G367400 chr1B 598189659 598193767 4108 False 7589.000000 7589 100.000000 1 4109 1 chr1B.!!$F2 4108
1 TraesCS1B01G367400 chr1D 440716652 440721560 4908 False 1758.233333 5020 90.968333 33 4105 3 chr1D.!!$F2 4072
2 TraesCS1B01G367400 chr1A 537345021 537348093 3072 True 4590.000000 4590 93.625000 715 3799 1 chr1A.!!$R1 3084
3 TraesCS1B01G367400 chr6D 36252664 36254862 2198 False 2479.000000 2479 87.240000 994 3171 1 chr6D.!!$F1 2177
4 TraesCS1B01G367400 chr5D 406415451 406417590 2139 False 2455.000000 2455 87.414000 992 3147 1 chr5D.!!$F1 2155
5 TraesCS1B01G367400 chr5B 487437651 487439803 2152 False 2438.000000 2438 87.236000 992 3147 1 chr5B.!!$F1 2155
6 TraesCS1B01G367400 chr5B 505378335 505378907 572 False 662.000000 662 87.457000 999 1580 1 chr5B.!!$F2 581
7 TraesCS1B01G367400 chr6B 75941493 75943741 2248 False 2427.000000 2427 86.466000 961 3176 1 chr6B.!!$F1 2215
8 TraesCS1B01G367400 chr5A 512059558 512061685 2127 False 2374.000000 2374 86.896000 998 3132 1 chr5A.!!$F1 2134
9 TraesCS1B01G367400 chr6A 40297969 40300172 2203 False 2355.000000 2355 86.198000 994 3176 1 chr6A.!!$F1 2182
10 TraesCS1B01G367400 chr4B 9395913 9397065 1152 False 712.500000 952 89.825500 2680 4006 2 chr4B.!!$F4 1326
11 TraesCS1B01G367400 chr4A 114529747 114530768 1021 False 642.500000 806 89.954500 2796 4006 2 chr4A.!!$F1 1210
12 TraesCS1B01G367400 chr7D 603583289 603583950 661 False 669.000000 669 85.081000 980 1648 1 chr7D.!!$F1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 567 0.030638 GGATGTGCGGCGCAATATTT 59.969 50.0 38.05 18.93 41.47 1.40 F
1809 3053 0.038159 ACCAGAAGAAGAAGACGGCG 60.038 55.0 4.80 4.80 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2465 3709 0.671781 GCAGACCGAGATGCAGTTGT 60.672 55.0 0.0 0.0 42.11 3.32 R
3707 5005 1.596603 TCCGCATTAGTGGCATGATG 58.403 50.0 0.0 0.0 45.27 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.399004 AGAAGATGAAGATCAAGGACCG 57.601 45.455 0.00 0.00 0.00 4.79
24 25 3.772025 AGAAGATGAAGATCAAGGACCGT 59.228 43.478 0.00 0.00 0.00 4.83
25 26 4.956700 AGAAGATGAAGATCAAGGACCGTA 59.043 41.667 0.00 0.00 0.00 4.02
26 27 4.927978 AGATGAAGATCAAGGACCGTAG 57.072 45.455 0.00 0.00 0.00 3.51
44 45 2.507324 GAAGTGCGAGGACGGCTC 60.507 66.667 0.00 0.00 40.15 4.70
45 46 4.421479 AAGTGCGAGGACGGCTCG 62.421 66.667 5.85 5.85 45.93 5.03
47 48 4.415332 GTGCGAGGACGGCTCGAA 62.415 66.667 13.26 0.67 46.06 3.71
50 51 3.744719 CGAGGACGGCTCGAACCA 61.745 66.667 5.56 0.00 46.06 3.67
52 53 2.282958 AGGACGGCTCGAACCAGA 60.283 61.111 5.56 0.00 32.30 3.86
92 93 4.925861 GATGCAGGCGGAGGAGGC 62.926 72.222 0.00 0.00 0.00 4.70
102 103 4.247380 GAGGAGGCTGCCCGGATG 62.247 72.222 16.57 0.00 35.76 3.51
113 114 4.161295 CCGGATGCAGGCGGAGAA 62.161 66.667 0.00 0.00 0.00 2.87
114 115 2.587194 CGGATGCAGGCGGAGAAG 60.587 66.667 0.00 0.00 0.00 2.85
115 116 2.203126 GGATGCAGGCGGAGAAGG 60.203 66.667 0.00 0.00 0.00 3.46
127 128 1.137825 GAGAAGGACGAGCAGGACG 59.862 63.158 0.00 0.00 0.00 4.79
132 133 2.167861 GGACGAGCAGGACGCATTC 61.168 63.158 0.00 0.00 46.13 2.67
133 134 1.153745 GACGAGCAGGACGCATTCT 60.154 57.895 0.00 0.00 46.13 2.40
134 135 1.416813 GACGAGCAGGACGCATTCTG 61.417 60.000 0.00 0.00 46.13 3.02
143 144 3.207669 CGCATTCTGCCTGGAGCC 61.208 66.667 0.00 0.00 41.12 4.70
144 145 2.044650 GCATTCTGCCTGGAGCCA 60.045 61.111 0.00 0.00 42.71 4.75
146 147 1.302285 CATTCTGCCTGGAGCCAGT 59.698 57.895 14.97 0.00 42.15 4.00
147 148 1.030488 CATTCTGCCTGGAGCCAGTG 61.030 60.000 14.97 7.96 42.15 3.66
148 149 2.207501 ATTCTGCCTGGAGCCAGTGG 62.208 60.000 14.97 4.20 42.15 4.00
199 200 3.004752 CCCCCTGACATTAGGACTTTG 57.995 52.381 0.00 0.00 40.42 2.77
200 201 2.369394 CCCCTGACATTAGGACTTTGC 58.631 52.381 0.00 0.00 40.42 3.68
201 202 2.025887 CCCCTGACATTAGGACTTTGCT 60.026 50.000 0.00 0.00 40.42 3.91
202 203 3.012518 CCCTGACATTAGGACTTTGCTG 58.987 50.000 0.00 0.00 40.42 4.41
203 204 2.421424 CCTGACATTAGGACTTTGCTGC 59.579 50.000 0.00 0.00 40.42 5.25
204 205 3.341823 CTGACATTAGGACTTTGCTGCT 58.658 45.455 0.00 0.00 0.00 4.24
205 206 4.507710 CTGACATTAGGACTTTGCTGCTA 58.492 43.478 0.00 0.00 0.00 3.49
206 207 4.905429 TGACATTAGGACTTTGCTGCTAA 58.095 39.130 0.00 0.00 0.00 3.09
207 208 5.500234 TGACATTAGGACTTTGCTGCTAAT 58.500 37.500 0.00 0.00 35.73 1.73
208 209 5.945784 TGACATTAGGACTTTGCTGCTAATT 59.054 36.000 0.00 0.00 33.75 1.40
209 210 6.094048 TGACATTAGGACTTTGCTGCTAATTC 59.906 38.462 0.00 3.39 33.75 2.17
210 211 5.945784 ACATTAGGACTTTGCTGCTAATTCA 59.054 36.000 13.92 0.00 33.75 2.57
211 212 6.094603 ACATTAGGACTTTGCTGCTAATTCAG 59.905 38.462 13.92 0.00 33.75 3.02
212 213 4.026356 AGGACTTTGCTGCTAATTCAGT 57.974 40.909 13.92 1.98 36.49 3.41
213 214 3.755378 AGGACTTTGCTGCTAATTCAGTG 59.245 43.478 13.92 0.00 36.49 3.66
214 215 3.753272 GGACTTTGCTGCTAATTCAGTGA 59.247 43.478 13.92 0.00 36.49 3.41
215 216 4.397417 GGACTTTGCTGCTAATTCAGTGAT 59.603 41.667 13.92 0.00 36.49 3.06
216 217 5.306532 ACTTTGCTGCTAATTCAGTGATG 57.693 39.130 0.00 0.00 36.49 3.07
217 218 5.005740 ACTTTGCTGCTAATTCAGTGATGA 58.994 37.500 0.00 0.00 36.49 2.92
218 219 5.474532 ACTTTGCTGCTAATTCAGTGATGAA 59.525 36.000 0.00 0.00 36.49 2.57
219 220 4.952262 TGCTGCTAATTCAGTGATGAAC 57.048 40.909 0.00 0.00 36.49 3.18
220 221 4.325972 TGCTGCTAATTCAGTGATGAACA 58.674 39.130 0.00 0.00 36.49 3.18
221 222 4.393990 TGCTGCTAATTCAGTGATGAACAG 59.606 41.667 0.00 0.20 36.49 3.16
222 223 4.394300 GCTGCTAATTCAGTGATGAACAGT 59.606 41.667 0.00 0.00 36.49 3.55
224 225 4.154737 TGCTAATTCAGTGATGAACAGTGC 59.845 41.667 0.00 0.00 46.21 4.40
225 226 4.154737 GCTAATTCAGTGATGAACAGTGCA 59.845 41.667 0.00 0.00 46.21 4.57
226 227 5.163683 GCTAATTCAGTGATGAACAGTGCAT 60.164 40.000 0.00 0.00 46.21 3.96
227 228 6.037500 GCTAATTCAGTGATGAACAGTGCATA 59.962 38.462 0.00 0.00 46.21 3.14
228 229 6.822667 AATTCAGTGATGAACAGTGCATAA 57.177 33.333 0.00 0.00 46.21 1.90
229 230 7.400599 AATTCAGTGATGAACAGTGCATAAT 57.599 32.000 0.00 0.00 46.21 1.28
230 231 6.822667 TTCAGTGATGAACAGTGCATAATT 57.177 33.333 0.00 0.00 46.21 1.40
231 232 7.920160 TTCAGTGATGAACAGTGCATAATTA 57.080 32.000 0.00 0.00 46.21 1.40
232 233 7.543947 TCAGTGATGAACAGTGCATAATTAG 57.456 36.000 0.00 0.00 46.21 1.73
233 234 7.330262 TCAGTGATGAACAGTGCATAATTAGA 58.670 34.615 0.00 0.00 46.21 2.10
234 235 7.823799 TCAGTGATGAACAGTGCATAATTAGAA 59.176 33.333 0.00 0.00 46.21 2.10
235 236 8.453320 CAGTGATGAACAGTGCATAATTAGAAA 58.547 33.333 0.00 0.00 41.99 2.52
236 237 9.182214 AGTGATGAACAGTGCATAATTAGAAAT 57.818 29.630 0.00 0.00 0.00 2.17
237 238 9.793252 GTGATGAACAGTGCATAATTAGAAATT 57.207 29.630 0.00 0.00 0.00 1.82
274 275 8.763049 AAAGTCTTATTTTTCTATGCTTTGGC 57.237 30.769 0.00 0.00 39.26 4.52
275 276 6.867550 AGTCTTATTTTTCTATGCTTTGGCC 58.132 36.000 0.00 0.00 37.74 5.36
276 277 6.042777 GTCTTATTTTTCTATGCTTTGGCCC 58.957 40.000 0.00 0.00 37.74 5.80
277 278 5.957774 TCTTATTTTTCTATGCTTTGGCCCT 59.042 36.000 0.00 0.00 37.74 5.19
278 279 4.743057 ATTTTTCTATGCTTTGGCCCTC 57.257 40.909 0.00 0.00 37.74 4.30
279 280 2.143876 TTTCTATGCTTTGGCCCTCC 57.856 50.000 0.00 0.00 37.74 4.30
280 281 0.258774 TTCTATGCTTTGGCCCTCCC 59.741 55.000 0.00 0.00 37.74 4.30
281 282 0.624500 TCTATGCTTTGGCCCTCCCT 60.625 55.000 0.00 0.00 37.74 4.20
282 283 1.140312 CTATGCTTTGGCCCTCCCTA 58.860 55.000 0.00 0.00 37.74 3.53
283 284 1.494721 CTATGCTTTGGCCCTCCCTAA 59.505 52.381 0.00 0.00 37.74 2.69
284 285 0.033109 ATGCTTTGGCCCTCCCTAAC 60.033 55.000 0.00 0.00 37.74 2.34
285 286 1.379977 GCTTTGGCCCTCCCTAACC 60.380 63.158 0.00 0.00 0.00 2.85
286 287 1.864263 GCTTTGGCCCTCCCTAACCT 61.864 60.000 0.00 0.00 0.00 3.50
287 288 0.034089 CTTTGGCCCTCCCTAACCTG 60.034 60.000 0.00 0.00 0.00 4.00
288 289 0.774491 TTTGGCCCTCCCTAACCTGT 60.774 55.000 0.00 0.00 0.00 4.00
289 290 0.774491 TTGGCCCTCCCTAACCTGTT 60.774 55.000 0.00 0.00 0.00 3.16
290 291 0.774491 TGGCCCTCCCTAACCTGTTT 60.774 55.000 0.00 0.00 0.00 2.83
291 292 0.408309 GGCCCTCCCTAACCTGTTTT 59.592 55.000 0.00 0.00 0.00 2.43
292 293 1.545841 GCCCTCCCTAACCTGTTTTG 58.454 55.000 0.00 0.00 0.00 2.44
293 294 1.074889 GCCCTCCCTAACCTGTTTTGA 59.925 52.381 0.00 0.00 0.00 2.69
294 295 2.791655 CCCTCCCTAACCTGTTTTGAC 58.208 52.381 0.00 0.00 0.00 3.18
295 296 2.375509 CCCTCCCTAACCTGTTTTGACT 59.624 50.000 0.00 0.00 0.00 3.41
296 297 3.412386 CCTCCCTAACCTGTTTTGACTG 58.588 50.000 0.00 0.00 0.00 3.51
297 298 2.814336 CTCCCTAACCTGTTTTGACTGC 59.186 50.000 0.00 0.00 0.00 4.40
298 299 2.173782 TCCCTAACCTGTTTTGACTGCA 59.826 45.455 0.00 0.00 0.00 4.41
299 300 2.955660 CCCTAACCTGTTTTGACTGCAA 59.044 45.455 0.00 0.00 0.00 4.08
300 301 3.573967 CCCTAACCTGTTTTGACTGCAAT 59.426 43.478 0.00 0.00 33.25 3.56
301 302 4.321230 CCCTAACCTGTTTTGACTGCAATC 60.321 45.833 0.00 0.00 33.25 2.67
302 303 3.354089 AACCTGTTTTGACTGCAATCG 57.646 42.857 0.00 0.00 33.25 3.34
303 304 1.001378 ACCTGTTTTGACTGCAATCGC 60.001 47.619 0.00 0.00 33.25 4.58
304 305 1.666888 CCTGTTTTGACTGCAATCGCC 60.667 52.381 0.00 0.00 37.32 5.54
305 306 0.313672 TGTTTTGACTGCAATCGCCC 59.686 50.000 0.00 0.00 37.32 6.13
306 307 0.388520 GTTTTGACTGCAATCGCCCC 60.389 55.000 0.00 0.00 37.32 5.80
307 308 1.531739 TTTTGACTGCAATCGCCCCC 61.532 55.000 0.00 0.00 37.32 5.40
308 309 2.424842 TTTGACTGCAATCGCCCCCT 62.425 55.000 0.00 0.00 37.32 4.79
309 310 2.825836 GACTGCAATCGCCCCCTG 60.826 66.667 0.00 0.00 37.32 4.45
310 311 3.329542 GACTGCAATCGCCCCCTGA 62.330 63.158 0.00 0.00 37.32 3.86
311 312 2.194056 CTGCAATCGCCCCCTGAT 59.806 61.111 0.00 0.00 37.32 2.90
312 313 1.895707 CTGCAATCGCCCCCTGATC 60.896 63.158 0.00 0.00 37.32 2.92
313 314 2.595754 GCAATCGCCCCCTGATCC 60.596 66.667 0.00 0.00 0.00 3.36
314 315 2.918248 CAATCGCCCCCTGATCCA 59.082 61.111 0.00 0.00 0.00 3.41
315 316 1.227102 CAATCGCCCCCTGATCCAA 59.773 57.895 0.00 0.00 0.00 3.53
316 317 0.395586 CAATCGCCCCCTGATCCAAA 60.396 55.000 0.00 0.00 0.00 3.28
317 318 0.557729 AATCGCCCCCTGATCCAAAT 59.442 50.000 0.00 0.00 0.00 2.32
318 319 0.557729 ATCGCCCCCTGATCCAAATT 59.442 50.000 0.00 0.00 0.00 1.82
319 320 0.334676 TCGCCCCCTGATCCAAATTT 59.665 50.000 0.00 0.00 0.00 1.82
320 321 1.194218 CGCCCCCTGATCCAAATTTT 58.806 50.000 0.00 0.00 0.00 1.82
321 322 1.136891 CGCCCCCTGATCCAAATTTTC 59.863 52.381 0.00 0.00 0.00 2.29
322 323 2.470990 GCCCCCTGATCCAAATTTTCT 58.529 47.619 0.00 0.00 0.00 2.52
323 324 2.169144 GCCCCCTGATCCAAATTTTCTG 59.831 50.000 0.00 0.00 0.00 3.02
324 325 2.767960 CCCCCTGATCCAAATTTTCTGG 59.232 50.000 7.11 7.11 35.05 3.86
325 326 2.169144 CCCCTGATCCAAATTTTCTGGC 59.831 50.000 8.17 0.00 33.63 4.85
326 327 3.102204 CCCTGATCCAAATTTTCTGGCT 58.898 45.455 8.17 0.00 33.63 4.75
327 328 3.131755 CCCTGATCCAAATTTTCTGGCTC 59.868 47.826 8.17 1.46 33.63 4.70
328 329 3.131755 CCTGATCCAAATTTTCTGGCTCC 59.868 47.826 2.46 0.00 33.63 4.70
329 330 2.754552 TGATCCAAATTTTCTGGCTCCG 59.245 45.455 0.00 0.00 33.63 4.63
330 331 0.887933 TCCAAATTTTCTGGCTCCGC 59.112 50.000 0.00 0.00 33.63 5.54
366 367 2.233654 CGAATTCCGCTCGGAGCAG 61.234 63.158 27.83 18.20 46.06 4.24
368 369 2.579684 GAATTCCGCTCGGAGCAGGT 62.580 60.000 27.83 14.37 46.06 4.00
384 385 2.581354 GTGCTCGGCCAGTGATCT 59.419 61.111 2.24 0.00 0.00 2.75
388 389 1.954362 GCTCGGCCAGTGATCTGAGT 61.954 60.000 2.24 0.00 43.76 3.41
394 395 1.202627 GCCAGTGATCTGAGTCCATCC 60.203 57.143 0.00 0.00 43.76 3.51
395 396 2.113807 CCAGTGATCTGAGTCCATCCA 58.886 52.381 0.00 0.00 43.76 3.41
397 398 3.136077 CCAGTGATCTGAGTCCATCCATT 59.864 47.826 0.00 0.00 43.76 3.16
399 400 5.295950 CAGTGATCTGAGTCCATCCATTAC 58.704 45.833 0.00 0.00 43.76 1.89
409 410 1.270305 CCATCCATTACGCTCGGACAT 60.270 52.381 0.00 0.00 0.00 3.06
423 424 4.032104 GCTCGGACATTGATTTCATTTTGC 59.968 41.667 0.00 0.00 0.00 3.68
426 427 4.871557 CGGACATTGATTTCATTTTGCCAT 59.128 37.500 0.00 0.00 0.00 4.40
427 428 5.220510 CGGACATTGATTTCATTTTGCCATG 60.221 40.000 0.00 0.00 0.00 3.66
428 429 5.644636 GGACATTGATTTCATTTTGCCATGT 59.355 36.000 0.00 0.00 0.00 3.21
429 430 6.817641 GGACATTGATTTCATTTTGCCATGTA 59.182 34.615 0.00 0.00 0.00 2.29
430 431 7.496591 GGACATTGATTTCATTTTGCCATGTAT 59.503 33.333 0.00 0.00 0.00 2.29
442 443 7.615582 TTTTGCCATGTATGTTTTGTTGAAA 57.384 28.000 0.00 0.00 0.00 2.69
469 470 8.672214 ATGATTTGTTTTGCTTTGTTTCAAAC 57.328 26.923 0.00 0.00 32.58 2.93
471 472 8.348507 TGATTTGTTTTGCTTTGTTTCAAACTT 58.651 25.926 1.10 0.00 32.58 2.66
472 473 9.179552 GATTTGTTTTGCTTTGTTTCAAACTTT 57.820 25.926 1.10 0.00 32.58 2.66
473 474 8.917415 TTTGTTTTGCTTTGTTTCAAACTTTT 57.083 23.077 1.10 0.00 32.58 2.27
474 475 7.905031 TGTTTTGCTTTGTTTCAAACTTTTG 57.095 28.000 1.10 0.00 39.48 2.44
475 476 6.416161 TGTTTTGCTTTGTTTCAAACTTTTGC 59.584 30.769 1.10 2.06 38.05 3.68
476 477 5.679734 TTGCTTTGTTTCAAACTTTTGCA 57.320 30.435 1.10 4.55 38.05 4.08
477 478 5.876612 TGCTTTGTTTCAAACTTTTGCAT 57.123 30.435 1.10 0.00 38.05 3.96
478 479 6.251655 TGCTTTGTTTCAAACTTTTGCATT 57.748 29.167 1.10 0.00 38.05 3.56
479 480 6.313252 TGCTTTGTTTCAAACTTTTGCATTC 58.687 32.000 1.10 0.00 38.05 2.67
480 481 6.072838 TGCTTTGTTTCAAACTTTTGCATTCA 60.073 30.769 1.10 0.00 38.05 2.57
481 482 6.466730 GCTTTGTTTCAAACTTTTGCATTCAG 59.533 34.615 1.10 0.00 38.05 3.02
482 483 7.623925 GCTTTGTTTCAAACTTTTGCATTCAGA 60.624 33.333 1.10 0.00 38.05 3.27
483 484 6.645700 TGTTTCAAACTTTTGCATTCAGAC 57.354 33.333 1.10 0.00 38.05 3.51
484 485 6.162079 TGTTTCAAACTTTTGCATTCAGACA 58.838 32.000 1.10 0.00 38.05 3.41
485 486 6.310956 TGTTTCAAACTTTTGCATTCAGACAG 59.689 34.615 1.10 0.00 38.05 3.51
486 487 5.581126 TCAAACTTTTGCATTCAGACAGT 57.419 34.783 0.00 0.00 38.05 3.55
487 488 5.964758 TCAAACTTTTGCATTCAGACAGTT 58.035 33.333 0.00 0.00 38.05 3.16
488 489 6.397272 TCAAACTTTTGCATTCAGACAGTTT 58.603 32.000 0.00 0.00 38.05 2.66
489 490 6.310956 TCAAACTTTTGCATTCAGACAGTTTG 59.689 34.615 15.95 15.95 42.52 2.93
490 491 5.329035 ACTTTTGCATTCAGACAGTTTGT 57.671 34.783 0.00 0.00 0.00 2.83
491 492 6.449635 ACTTTTGCATTCAGACAGTTTGTA 57.550 33.333 0.00 0.00 0.00 2.41
492 493 7.042797 ACTTTTGCATTCAGACAGTTTGTAT 57.957 32.000 0.00 0.00 0.00 2.29
493 494 7.141363 ACTTTTGCATTCAGACAGTTTGTATC 58.859 34.615 0.00 0.00 0.00 2.24
494 495 4.926860 TGCATTCAGACAGTTTGTATCG 57.073 40.909 0.00 0.00 0.00 2.92
495 496 4.314961 TGCATTCAGACAGTTTGTATCGT 58.685 39.130 0.00 0.00 0.00 3.73
496 497 5.474825 TGCATTCAGACAGTTTGTATCGTA 58.525 37.500 0.00 0.00 0.00 3.43
497 498 6.106003 TGCATTCAGACAGTTTGTATCGTAT 58.894 36.000 0.00 0.00 0.00 3.06
498 499 6.035975 TGCATTCAGACAGTTTGTATCGTATG 59.964 38.462 0.00 0.00 0.00 2.39
499 500 6.255670 GCATTCAGACAGTTTGTATCGTATGA 59.744 38.462 0.00 0.00 0.00 2.15
500 501 7.042456 GCATTCAGACAGTTTGTATCGTATGAT 60.042 37.037 2.37 2.37 38.67 2.45
501 502 7.987268 TTCAGACAGTTTGTATCGTATGATC 57.013 36.000 0.00 0.00 35.99 2.92
502 503 6.199393 TCAGACAGTTTGTATCGTATGATCG 58.801 40.000 0.00 0.00 35.99 3.69
503 504 6.037830 TCAGACAGTTTGTATCGTATGATCGA 59.962 38.462 0.00 0.00 43.86 3.59
504 505 6.140895 CAGACAGTTTGTATCGTATGATCGAC 59.859 42.308 0.00 0.00 42.56 4.20
505 506 4.968181 ACAGTTTGTATCGTATGATCGACG 59.032 41.667 12.46 12.46 42.56 5.12
506 507 4.968181 CAGTTTGTATCGTATGATCGACGT 59.032 41.667 16.71 0.00 42.56 4.34
507 508 6.131389 CAGTTTGTATCGTATGATCGACGTA 58.869 40.000 16.71 8.30 42.56 3.57
508 509 6.084680 CAGTTTGTATCGTATGATCGACGTAC 59.915 42.308 16.71 16.66 42.56 3.67
509 510 5.655893 TTGTATCGTATGATCGACGTACA 57.344 39.130 16.71 18.30 42.56 2.90
510 511 5.851047 TGTATCGTATGATCGACGTACAT 57.149 39.130 16.71 12.19 42.56 2.29
511 512 5.614760 TGTATCGTATGATCGACGTACATG 58.385 41.667 16.71 0.00 42.56 3.21
512 513 5.406175 TGTATCGTATGATCGACGTACATGA 59.594 40.000 16.71 8.59 42.56 3.07
513 514 4.799419 TCGTATGATCGACGTACATGAA 57.201 40.909 16.71 0.00 40.02 2.57
514 515 5.352643 TCGTATGATCGACGTACATGAAT 57.647 39.130 16.71 0.00 40.02 2.57
515 516 5.754778 TCGTATGATCGACGTACATGAATT 58.245 37.500 16.71 0.00 40.02 2.17
516 517 5.623673 TCGTATGATCGACGTACATGAATTG 59.376 40.000 16.71 0.00 40.02 2.32
517 518 4.715520 ATGATCGACGTACATGAATTGC 57.284 40.909 0.00 0.00 0.00 3.56
518 519 3.516615 TGATCGACGTACATGAATTGCA 58.483 40.909 0.00 0.00 0.00 4.08
519 520 4.119136 TGATCGACGTACATGAATTGCAT 58.881 39.130 0.00 0.00 37.85 3.96
532 533 5.524971 TGAATTGCATGGATTTGAGGATC 57.475 39.130 0.00 0.00 0.00 3.36
533 534 5.600898 ATGAATTGCATGGATTTGAGGATCA 59.399 36.000 0.00 0.00 38.76 2.92
534 535 6.099125 ATGAATTGCATGGATTTGAGGATCAA 59.901 34.615 0.00 0.00 44.67 2.57
550 551 8.771521 TGAGGATCAAAATTTGTGATATGGAT 57.228 30.769 5.56 0.00 45.97 3.41
551 552 8.635328 TGAGGATCAAAATTTGTGATATGGATG 58.365 33.333 5.56 0.00 45.97 3.51
552 553 8.543293 AGGATCAAAATTTGTGATATGGATGT 57.457 30.769 5.56 0.00 35.84 3.06
553 554 8.418662 AGGATCAAAATTTGTGATATGGATGTG 58.581 33.333 5.56 0.00 35.84 3.21
554 555 7.170320 GGATCAAAATTTGTGATATGGATGTGC 59.830 37.037 5.56 0.00 35.84 4.57
555 556 6.035217 TCAAAATTTGTGATATGGATGTGCG 58.965 36.000 5.56 0.00 0.00 5.34
556 557 4.572985 AATTTGTGATATGGATGTGCGG 57.427 40.909 0.00 0.00 0.00 5.69
557 558 1.308047 TTGTGATATGGATGTGCGGC 58.692 50.000 0.00 0.00 0.00 6.53
558 559 0.879839 TGTGATATGGATGTGCGGCG 60.880 55.000 0.51 0.51 0.00 6.46
559 560 1.960763 TGATATGGATGTGCGGCGC 60.961 57.895 27.44 27.44 0.00 6.53
560 561 1.960763 GATATGGATGTGCGGCGCA 60.961 57.895 33.07 33.07 35.60 6.09
561 562 1.506309 GATATGGATGTGCGGCGCAA 61.506 55.000 38.05 25.69 41.47 4.85
562 563 0.890542 ATATGGATGTGCGGCGCAAT 60.891 50.000 38.05 28.94 41.47 3.56
563 564 0.250081 TATGGATGTGCGGCGCAATA 60.250 50.000 38.05 27.92 41.47 1.90
564 565 0.890542 ATGGATGTGCGGCGCAATAT 60.891 50.000 38.05 31.16 41.47 1.28
565 566 1.100463 TGGATGTGCGGCGCAATATT 61.100 50.000 38.05 20.85 41.47 1.28
566 567 0.030638 GGATGTGCGGCGCAATATTT 59.969 50.000 38.05 18.93 41.47 1.40
567 568 1.122849 GATGTGCGGCGCAATATTTG 58.877 50.000 38.05 0.00 41.47 2.32
568 569 0.737804 ATGTGCGGCGCAATATTTGA 59.262 45.000 38.05 14.30 41.47 2.69
569 570 0.098552 TGTGCGGCGCAATATTTGAG 59.901 50.000 38.05 0.00 41.47 3.02
570 571 0.592247 GTGCGGCGCAATATTTGAGG 60.592 55.000 38.05 0.00 41.47 3.86
571 572 1.008538 GCGGCGCAATATTTGAGGG 60.009 57.895 29.21 0.00 0.00 4.30
572 573 1.654220 CGGCGCAATATTTGAGGGG 59.346 57.895 10.83 0.00 0.00 4.79
573 574 1.101049 CGGCGCAATATTTGAGGGGT 61.101 55.000 10.83 0.00 0.00 4.95
574 575 0.385390 GGCGCAATATTTGAGGGGTG 59.615 55.000 10.83 0.00 0.00 4.61
575 576 0.249031 GCGCAATATTTGAGGGGTGC 60.249 55.000 0.30 0.00 0.00 5.01
576 577 0.385390 CGCAATATTTGAGGGGTGCC 59.615 55.000 0.00 0.00 0.00 5.01
577 578 1.780503 GCAATATTTGAGGGGTGCCT 58.219 50.000 0.00 0.00 0.00 4.75
578 579 1.410153 GCAATATTTGAGGGGTGCCTG 59.590 52.381 0.00 0.00 0.00 4.85
579 580 2.034124 CAATATTTGAGGGGTGCCTGG 58.966 52.381 0.00 0.00 0.00 4.45
580 581 1.308877 ATATTTGAGGGGTGCCTGGT 58.691 50.000 0.00 0.00 0.00 4.00
581 582 0.623723 TATTTGAGGGGTGCCTGGTC 59.376 55.000 0.00 0.00 0.00 4.02
582 583 1.434513 ATTTGAGGGGTGCCTGGTCA 61.435 55.000 0.00 0.00 0.00 4.02
583 584 1.650242 TTTGAGGGGTGCCTGGTCAA 61.650 55.000 0.00 0.00 0.00 3.18
584 585 1.434513 TTGAGGGGTGCCTGGTCAAT 61.435 55.000 0.00 0.00 0.00 2.57
585 586 1.077429 GAGGGGTGCCTGGTCAATC 60.077 63.158 0.00 0.00 0.00 2.67
586 587 2.043953 GGGGTGCCTGGTCAATCC 60.044 66.667 0.00 0.23 0.00 3.01
587 588 2.043953 GGGTGCCTGGTCAATCCC 60.044 66.667 0.00 0.00 34.77 3.85
588 589 2.043953 GGTGCCTGGTCAATCCCC 60.044 66.667 0.00 0.00 34.77 4.81
589 590 2.763215 GTGCCTGGTCAATCCCCA 59.237 61.111 0.00 0.00 34.77 4.96
601 602 2.206900 TCCCCAGGGAAGCACTCA 59.793 61.111 7.25 0.00 42.05 3.41
602 603 1.920325 TCCCCAGGGAAGCACTCAG 60.920 63.158 7.25 0.00 42.05 3.35
606 607 2.925170 AGGGAAGCACTCAGGCGT 60.925 61.111 0.00 0.00 39.27 5.68
634 635 1.677633 CGTTGAAGGGGCCGGATTT 60.678 57.895 5.05 0.00 0.00 2.17
635 636 1.890174 GTTGAAGGGGCCGGATTTG 59.110 57.895 5.05 0.00 0.00 2.32
636 637 1.981853 TTGAAGGGGCCGGATTTGC 60.982 57.895 5.05 0.00 0.00 3.68
643 644 2.125952 GCCGGATTTGCCAAGTGC 60.126 61.111 5.05 0.00 41.77 4.40
652 653 2.203480 GCCAAGTGCCCAAGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
655 656 0.468029 CCAAGTGCCCAAGTCCAACT 60.468 55.000 0.00 0.00 0.00 3.16
666 667 3.265791 CAAGTCCAACTGTAGATGCTCC 58.734 50.000 0.00 0.00 0.00 4.70
685 686 4.762251 GCTCCAAGGTTCACTATCAACTTT 59.238 41.667 0.00 0.00 0.00 2.66
686 687 5.241728 GCTCCAAGGTTCACTATCAACTTTT 59.758 40.000 0.00 0.00 0.00 2.27
775 1937 4.024472 TCAAAACGAAGATTCACGCATTGA 60.024 37.500 14.01 14.01 36.16 2.57
784 1948 2.106477 TCACGCATTGACATAGGCAA 57.894 45.000 0.00 0.00 0.00 4.52
785 1949 1.737236 TCACGCATTGACATAGGCAAC 59.263 47.619 0.00 0.00 0.00 4.17
786 1950 1.468127 CACGCATTGACATAGGCAACA 59.532 47.619 0.00 0.00 41.41 3.33
787 1951 2.097954 CACGCATTGACATAGGCAACAT 59.902 45.455 0.00 0.00 41.41 2.71
789 1953 3.561310 ACGCATTGACATAGGCAACATAG 59.439 43.478 0.00 0.00 41.41 2.23
790 1954 3.561310 CGCATTGACATAGGCAACATAGT 59.439 43.478 0.00 0.00 41.41 2.12
791 1955 4.749598 CGCATTGACATAGGCAACATAGTA 59.250 41.667 0.00 0.00 41.41 1.82
792 1956 5.333339 CGCATTGACATAGGCAACATAGTAC 60.333 44.000 0.00 0.00 41.41 2.73
802 1966 3.246226 GGCAACATAGTACAAGCTGATCG 59.754 47.826 0.00 0.00 0.00 3.69
884 2048 1.608717 GGCTCAGATCCACCGTCACT 61.609 60.000 0.00 0.00 0.00 3.41
1612 2829 2.272146 GCCAGCGGGAGGAATTGA 59.728 61.111 7.23 0.00 35.59 2.57
1679 2896 3.551496 CTGCCAAGGCCACCTTCGA 62.551 63.158 5.01 0.00 42.67 3.71
1680 2897 2.044946 GCCAAGGCCACCTTCGAT 60.045 61.111 5.01 0.00 42.67 3.59
1681 2898 1.678970 GCCAAGGCCACCTTCGATT 60.679 57.895 5.01 0.00 42.67 3.34
1805 3049 2.635427 AGGTGGACCAGAAGAAGAAGAC 59.365 50.000 0.00 0.00 38.89 3.01
1807 3051 1.618837 TGGACCAGAAGAAGAAGACGG 59.381 52.381 0.00 0.00 0.00 4.79
1808 3052 1.673329 GGACCAGAAGAAGAAGACGGC 60.673 57.143 0.00 0.00 0.00 5.68
1809 3053 0.038159 ACCAGAAGAAGAAGACGGCG 60.038 55.000 4.80 4.80 0.00 6.46
1810 3054 0.737715 CCAGAAGAAGAAGACGGCGG 60.738 60.000 13.24 0.00 0.00 6.13
1911 3155 2.430921 CGCTTCCTGTTCGACGCT 60.431 61.111 0.00 0.00 0.00 5.07
2112 3356 2.650116 GCTCACCCAGCTCTCGGAA 61.650 63.158 0.00 0.00 45.83 4.30
2465 3709 3.565214 TTCCAAGGGGTCGCTGCA 61.565 61.111 0.00 0.00 34.93 4.41
2769 4021 1.536940 TGATCAGGACCGTGTTCGTA 58.463 50.000 0.00 0.00 35.01 3.43
2799 4059 3.205338 CATGGAGTTCAATATGGCGTCA 58.795 45.455 0.00 0.00 0.00 4.35
2958 4236 2.335011 CAGTCGACGCCAGTGACA 59.665 61.111 10.46 0.00 33.72 3.58
3165 4449 1.071605 GTCTGTCGTGCTGTTGGATC 58.928 55.000 0.00 0.00 0.00 3.36
3178 4462 5.130292 CTGTTGGATCAGCTTGTTTTCAT 57.870 39.130 0.00 0.00 0.00 2.57
3181 4465 6.446318 TGTTGGATCAGCTTGTTTTCATAAC 58.554 36.000 0.00 0.00 0.00 1.89
3249 4535 7.671495 AATAAAACCAAAATCATGCTTGACC 57.329 32.000 4.14 0.00 33.85 4.02
3295 4581 6.160576 TGTACTGATCGATCATCATTTGGA 57.839 37.500 27.43 9.62 40.95 3.53
3296 4582 6.218746 TGTACTGATCGATCATCATTTGGAG 58.781 40.000 27.43 14.94 40.95 3.86
3297 4583 5.287674 ACTGATCGATCATCATTTGGAGT 57.712 39.130 27.43 15.56 40.95 3.85
3298 4584 5.055144 ACTGATCGATCATCATTTGGAGTG 58.945 41.667 27.43 13.77 40.95 3.51
3299 4585 3.811497 TGATCGATCATCATTTGGAGTGC 59.189 43.478 23.99 0.00 36.51 4.40
3300 4586 3.264998 TCGATCATCATTTGGAGTGCA 57.735 42.857 0.00 0.00 0.00 4.57
3311 4597 5.127356 TCATTTGGAGTGCATGCATGAATTA 59.873 36.000 30.64 9.19 0.00 1.40
3326 4612 4.695217 TGAATTAATTGACCGTGCCTTC 57.305 40.909 5.17 0.00 0.00 3.46
3335 4621 0.322546 ACCGTGCCTTCTGAATTCCC 60.323 55.000 2.27 0.00 0.00 3.97
3425 4714 3.572255 TGGTTGCTTTCCAATGTCCTTAC 59.428 43.478 0.00 0.00 35.55 2.34
3444 4733 6.599244 TCCTTACGAATTCTCTTGATTGCAAT 59.401 34.615 12.83 12.83 32.68 3.56
3445 4734 6.690098 CCTTACGAATTCTCTTGATTGCAATG 59.310 38.462 18.59 2.40 32.68 2.82
3467 4756 8.758829 CAATGGTATATACTGGCATAGGTAGAA 58.241 37.037 12.54 0.00 0.00 2.10
3468 4757 7.956328 TGGTATATACTGGCATAGGTAGAAG 57.044 40.000 12.54 0.00 0.00 2.85
3469 4758 6.895756 TGGTATATACTGGCATAGGTAGAAGG 59.104 42.308 12.54 0.00 0.00 3.46
3495 4784 3.689347 TGTATGCACTGAATTGAAGGCT 58.311 40.909 0.00 0.00 0.00 4.58
3550 4839 3.255642 TGCCAAGAATGCAGAAACTTACC 59.744 43.478 0.00 0.00 34.05 2.85
3557 4846 5.471456 AGAATGCAGAAACTTACCTGAACAG 59.529 40.000 0.00 0.00 32.37 3.16
3582 4871 4.746729 TGCTTTTTGATTTCCCATCATCG 58.253 39.130 0.00 0.00 0.00 3.84
3597 4892 4.082300 CCATCATCGGAGAGTATGAAGGAG 60.082 50.000 0.00 0.00 41.39 3.69
3602 4897 4.537751 TCGGAGAGTATGAAGGAGTGATT 58.462 43.478 0.00 0.00 0.00 2.57
3603 4898 4.956700 TCGGAGAGTATGAAGGAGTGATTT 59.043 41.667 0.00 0.00 0.00 2.17
3612 4907 8.547173 AGTATGAAGGAGTGATTTCTGAATTCT 58.453 33.333 7.05 0.51 0.00 2.40
3615 4910 4.853007 AGGAGTGATTTCTGAATTCTGGG 58.147 43.478 11.89 0.73 0.00 4.45
3621 4916 3.719268 TTTCTGAATTCTGGGCAGCTA 57.281 42.857 11.89 0.00 0.00 3.32
3638 4933 3.569701 CAGCTAAACTGTCATGGGTGTTT 59.430 43.478 12.68 12.68 41.86 2.83
3692 4987 3.872771 TGGTAAAAGTTGTCCGAACTGTC 59.127 43.478 0.00 0.00 0.00 3.51
3707 5005 4.492570 CGAACTGTCGCCTGTTTTATCATC 60.493 45.833 0.00 0.00 41.08 2.92
3708 5006 3.937814 ACTGTCGCCTGTTTTATCATCA 58.062 40.909 0.00 0.00 0.00 3.07
3709 5007 4.517285 ACTGTCGCCTGTTTTATCATCAT 58.483 39.130 0.00 0.00 0.00 2.45
3710 5008 4.572389 ACTGTCGCCTGTTTTATCATCATC 59.428 41.667 0.00 0.00 0.00 2.92
3711 5009 4.512484 TGTCGCCTGTTTTATCATCATCA 58.488 39.130 0.00 0.00 0.00 3.07
3712 5010 5.125356 TGTCGCCTGTTTTATCATCATCAT 58.875 37.500 0.00 0.00 0.00 2.45
3778 5076 5.716228 TGGGTTTCTCTGTTTTATCATGCAT 59.284 36.000 0.00 0.00 0.00 3.96
3803 5101 4.439305 TGGCAAATTCATTCTGTAGTGC 57.561 40.909 0.00 0.00 0.00 4.40
3825 5125 4.673320 GCAGGAACACGTTTGTAAACAGTT 60.673 41.667 12.26 12.26 38.59 3.16
3845 5149 0.543277 TCCTTAGCCTGCACATCCTG 59.457 55.000 0.00 0.00 0.00 3.86
3854 5158 2.423446 TGCACATCCTGTATGCATGT 57.577 45.000 10.16 0.00 44.17 3.21
3894 5221 7.820386 TGTTATTAATCTGTAACTGAGCCGAAA 59.180 33.333 0.00 0.00 33.17 3.46
3956 5289 3.146066 TCCATGCTGGTTAACTTCACAC 58.854 45.455 5.42 0.00 39.03 3.82
4001 5334 3.636282 AATTTTGGCGAACAGTGGTAC 57.364 42.857 0.00 0.00 0.00 3.34
4062 5395 1.337387 TCTGCAGATGCTGATCTCTCG 59.663 52.381 13.74 0.00 42.71 4.04
4063 5396 1.337387 CTGCAGATGCTGATCTCTCGA 59.663 52.381 8.42 0.00 41.71 4.04
4069 5402 4.268167 CAGATGCTGATCTCTCGAAACAAG 59.732 45.833 0.00 0.00 36.75 3.16
4105 5438 1.347707 CTCCCCTGTTCAAGTGCTGTA 59.652 52.381 0.00 0.00 0.00 2.74
4106 5439 1.071699 TCCCCTGTTCAAGTGCTGTAC 59.928 52.381 0.00 0.00 0.00 2.90
4107 5440 1.148310 CCCTGTTCAAGTGCTGTACG 58.852 55.000 0.00 0.00 0.00 3.67
4108 5441 1.540363 CCCTGTTCAAGTGCTGTACGT 60.540 52.381 0.00 0.00 0.00 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.223923 ACGGTCCTTGATCTTCATCTTCTT 59.776 41.667 0.00 0.00 0.00 2.52
3 4 4.130286 ACGGTCCTTGATCTTCATCTTC 57.870 45.455 0.00 0.00 0.00 2.87
4 5 4.100189 CCTACGGTCCTTGATCTTCATCTT 59.900 45.833 0.00 0.00 0.00 2.40
5 6 3.639094 CCTACGGTCCTTGATCTTCATCT 59.361 47.826 0.00 0.00 0.00 2.90
6 7 3.637229 TCCTACGGTCCTTGATCTTCATC 59.363 47.826 0.00 0.00 0.00 2.92
7 8 3.643237 TCCTACGGTCCTTGATCTTCAT 58.357 45.455 0.00 0.00 0.00 2.57
8 9 3.095912 TCCTACGGTCCTTGATCTTCA 57.904 47.619 0.00 0.00 0.00 3.02
9 10 3.447944 ACTTCCTACGGTCCTTGATCTTC 59.552 47.826 0.00 0.00 0.00 2.87
10 11 3.195825 CACTTCCTACGGTCCTTGATCTT 59.804 47.826 0.00 0.00 0.00 2.40
11 12 2.761208 CACTTCCTACGGTCCTTGATCT 59.239 50.000 0.00 0.00 0.00 2.75
12 13 2.738964 GCACTTCCTACGGTCCTTGATC 60.739 54.545 0.00 0.00 0.00 2.92
13 14 1.207329 GCACTTCCTACGGTCCTTGAT 59.793 52.381 0.00 0.00 0.00 2.57
14 15 0.606604 GCACTTCCTACGGTCCTTGA 59.393 55.000 0.00 0.00 0.00 3.02
15 16 0.736325 CGCACTTCCTACGGTCCTTG 60.736 60.000 0.00 0.00 0.00 3.61
16 17 0.896940 TCGCACTTCCTACGGTCCTT 60.897 55.000 0.00 0.00 0.00 3.36
17 18 1.303888 TCGCACTTCCTACGGTCCT 60.304 57.895 0.00 0.00 0.00 3.85
18 19 1.139095 CTCGCACTTCCTACGGTCC 59.861 63.158 0.00 0.00 0.00 4.46
19 20 1.139095 CCTCGCACTTCCTACGGTC 59.861 63.158 0.00 0.00 0.00 4.79
20 21 1.303888 TCCTCGCACTTCCTACGGT 60.304 57.895 0.00 0.00 0.00 4.83
21 22 1.139095 GTCCTCGCACTTCCTACGG 59.861 63.158 0.00 0.00 0.00 4.02
22 23 1.226323 CGTCCTCGCACTTCCTACG 60.226 63.158 0.00 0.00 0.00 3.51
23 24 1.139095 CCGTCCTCGCACTTCCTAC 59.861 63.158 0.00 0.00 35.54 3.18
24 25 2.707849 GCCGTCCTCGCACTTCCTA 61.708 63.158 0.00 0.00 35.54 2.94
25 26 4.070552 GCCGTCCTCGCACTTCCT 62.071 66.667 0.00 0.00 35.54 3.36
26 27 3.991536 GAGCCGTCCTCGCACTTCC 62.992 68.421 0.00 0.00 35.54 3.46
27 28 2.507324 GAGCCGTCCTCGCACTTC 60.507 66.667 0.00 0.00 35.54 3.01
38 39 2.125512 GCATCTGGTTCGAGCCGT 60.126 61.111 14.03 0.00 0.00 5.68
44 45 1.148157 CTACGCCTGCATCTGGTTCG 61.148 60.000 0.00 0.00 0.00 3.95
45 46 0.811616 CCTACGCCTGCATCTGGTTC 60.812 60.000 0.00 0.00 0.00 3.62
46 47 1.221840 CCTACGCCTGCATCTGGTT 59.778 57.895 0.00 0.00 0.00 3.67
47 48 1.680522 CTCCTACGCCTGCATCTGGT 61.681 60.000 0.00 0.00 0.00 4.00
50 51 2.801631 GCCTCCTACGCCTGCATCT 61.802 63.158 0.00 0.00 0.00 2.90
52 53 3.083349 TGCCTCCTACGCCTGCAT 61.083 61.111 0.00 0.00 0.00 3.96
96 97 4.161295 TTCTCCGCCTGCATCCGG 62.161 66.667 16.54 16.54 45.64 5.14
97 98 2.587194 CTTCTCCGCCTGCATCCG 60.587 66.667 0.00 0.00 0.00 4.18
98 99 2.203126 CCTTCTCCGCCTGCATCC 60.203 66.667 0.00 0.00 0.00 3.51
99 100 1.522580 GTCCTTCTCCGCCTGCATC 60.523 63.158 0.00 0.00 0.00 3.91
100 101 2.586792 GTCCTTCTCCGCCTGCAT 59.413 61.111 0.00 0.00 0.00 3.96
101 102 4.069232 CGTCCTTCTCCGCCTGCA 62.069 66.667 0.00 0.00 0.00 4.41
102 103 3.708220 CTCGTCCTTCTCCGCCTGC 62.708 68.421 0.00 0.00 0.00 4.85
103 104 2.492090 CTCGTCCTTCTCCGCCTG 59.508 66.667 0.00 0.00 0.00 4.85
104 105 3.453679 GCTCGTCCTTCTCCGCCT 61.454 66.667 0.00 0.00 0.00 5.52
105 106 3.708220 CTGCTCGTCCTTCTCCGCC 62.708 68.421 0.00 0.00 0.00 6.13
106 107 2.202676 CTGCTCGTCCTTCTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
107 108 2.046864 TCCTGCTCGTCCTTCTCCG 61.047 63.158 0.00 0.00 0.00 4.63
108 109 1.513622 GTCCTGCTCGTCCTTCTCC 59.486 63.158 0.00 0.00 0.00 3.71
109 110 1.137825 CGTCCTGCTCGTCCTTCTC 59.862 63.158 0.00 0.00 0.00 2.87
110 111 2.995872 GCGTCCTGCTCGTCCTTCT 61.996 63.158 0.00 0.00 41.73 2.85
111 112 2.507324 GCGTCCTGCTCGTCCTTC 60.507 66.667 0.00 0.00 41.73 3.46
112 113 2.172483 AATGCGTCCTGCTCGTCCTT 62.172 55.000 0.00 0.00 46.63 3.36
113 114 2.564553 GAATGCGTCCTGCTCGTCCT 62.565 60.000 0.00 0.00 46.63 3.85
114 115 2.125512 AATGCGTCCTGCTCGTCC 60.126 61.111 0.00 0.00 46.63 4.79
115 116 1.153745 AGAATGCGTCCTGCTCGTC 60.154 57.895 0.00 0.00 46.63 4.20
179 180 2.945890 GCAAAGTCCTAATGTCAGGGGG 60.946 54.545 0.00 0.00 36.26 5.40
180 181 2.025887 AGCAAAGTCCTAATGTCAGGGG 60.026 50.000 0.00 0.00 36.26 4.79
181 182 3.012518 CAGCAAAGTCCTAATGTCAGGG 58.987 50.000 0.00 0.00 36.26 4.45
182 183 2.421424 GCAGCAAAGTCCTAATGTCAGG 59.579 50.000 0.00 0.00 37.00 3.86
183 184 3.341823 AGCAGCAAAGTCCTAATGTCAG 58.658 45.455 0.00 0.00 0.00 3.51
184 185 3.423539 AGCAGCAAAGTCCTAATGTCA 57.576 42.857 0.00 0.00 0.00 3.58
185 186 6.094048 TGAATTAGCAGCAAAGTCCTAATGTC 59.906 38.462 0.00 0.00 32.50 3.06
186 187 5.945784 TGAATTAGCAGCAAAGTCCTAATGT 59.054 36.000 0.00 0.00 32.50 2.71
187 188 6.094603 ACTGAATTAGCAGCAAAGTCCTAATG 59.905 38.462 0.00 0.00 39.51 1.90
188 189 6.094603 CACTGAATTAGCAGCAAAGTCCTAAT 59.905 38.462 0.00 0.00 39.51 1.73
189 190 5.412594 CACTGAATTAGCAGCAAAGTCCTAA 59.587 40.000 0.00 0.00 39.51 2.69
190 191 4.937620 CACTGAATTAGCAGCAAAGTCCTA 59.062 41.667 0.00 0.00 39.51 2.94
191 192 3.755378 CACTGAATTAGCAGCAAAGTCCT 59.245 43.478 0.00 0.00 39.51 3.85
192 193 3.753272 TCACTGAATTAGCAGCAAAGTCC 59.247 43.478 0.00 0.00 39.51 3.85
193 194 5.122869 TCATCACTGAATTAGCAGCAAAGTC 59.877 40.000 0.00 0.00 39.51 3.01
194 195 5.005740 TCATCACTGAATTAGCAGCAAAGT 58.994 37.500 0.00 0.00 39.51 2.66
195 196 5.556355 TCATCACTGAATTAGCAGCAAAG 57.444 39.130 0.00 0.00 39.51 2.77
196 197 5.241285 TGTTCATCACTGAATTAGCAGCAAA 59.759 36.000 0.00 0.00 43.08 3.68
197 198 4.761227 TGTTCATCACTGAATTAGCAGCAA 59.239 37.500 0.00 0.00 43.08 3.91
198 199 4.325972 TGTTCATCACTGAATTAGCAGCA 58.674 39.130 0.00 0.00 43.08 4.41
199 200 4.394300 ACTGTTCATCACTGAATTAGCAGC 59.606 41.667 0.00 0.00 43.08 5.25
200 201 5.673068 GCACTGTTCATCACTGAATTAGCAG 60.673 44.000 0.00 0.00 43.08 4.24
201 202 4.154737 GCACTGTTCATCACTGAATTAGCA 59.845 41.667 0.00 0.00 43.08 3.49
202 203 4.154737 TGCACTGTTCATCACTGAATTAGC 59.845 41.667 0.00 0.00 43.08 3.09
203 204 5.868043 TGCACTGTTCATCACTGAATTAG 57.132 39.130 0.00 0.00 43.08 1.73
204 205 7.920160 TTATGCACTGTTCATCACTGAATTA 57.080 32.000 0.00 0.00 43.08 1.40
205 206 6.822667 TTATGCACTGTTCATCACTGAATT 57.177 33.333 0.00 0.00 43.08 2.17
206 207 7.400599 AATTATGCACTGTTCATCACTGAAT 57.599 32.000 0.00 0.00 43.08 2.57
207 208 6.822667 AATTATGCACTGTTCATCACTGAA 57.177 33.333 0.00 0.00 39.07 3.02
208 209 7.330262 TCTAATTATGCACTGTTCATCACTGA 58.670 34.615 0.00 0.00 0.00 3.41
209 210 7.543947 TCTAATTATGCACTGTTCATCACTG 57.456 36.000 0.00 0.00 0.00 3.66
210 211 8.565896 TTTCTAATTATGCACTGTTCATCACT 57.434 30.769 0.00 0.00 0.00 3.41
211 212 9.793252 AATTTCTAATTATGCACTGTTCATCAC 57.207 29.630 0.00 0.00 0.00 3.06
248 249 9.855021 GCCAAAGCATAGAAAAATAAGACTTTA 57.145 29.630 0.00 0.00 39.53 1.85
249 250 7.819415 GGCCAAAGCATAGAAAAATAAGACTTT 59.181 33.333 0.00 0.00 42.56 2.66
250 251 7.323420 GGCCAAAGCATAGAAAAATAAGACTT 58.677 34.615 0.00 0.00 42.56 3.01
251 252 6.127338 GGGCCAAAGCATAGAAAAATAAGACT 60.127 38.462 4.39 0.00 42.56 3.24
252 253 6.042777 GGGCCAAAGCATAGAAAAATAAGAC 58.957 40.000 4.39 0.00 42.56 3.01
253 254 5.957774 AGGGCCAAAGCATAGAAAAATAAGA 59.042 36.000 6.18 0.00 42.56 2.10
254 255 6.225981 AGGGCCAAAGCATAGAAAAATAAG 57.774 37.500 6.18 0.00 42.56 1.73
255 256 5.128663 GGAGGGCCAAAGCATAGAAAAATAA 59.871 40.000 6.18 0.00 42.56 1.40
256 257 4.649218 GGAGGGCCAAAGCATAGAAAAATA 59.351 41.667 6.18 0.00 42.56 1.40
257 258 3.452264 GGAGGGCCAAAGCATAGAAAAAT 59.548 43.478 6.18 0.00 42.56 1.82
258 259 2.831526 GGAGGGCCAAAGCATAGAAAAA 59.168 45.455 6.18 0.00 42.56 1.94
259 260 2.456577 GGAGGGCCAAAGCATAGAAAA 58.543 47.619 6.18 0.00 42.56 2.29
260 261 1.341976 GGGAGGGCCAAAGCATAGAAA 60.342 52.381 6.18 0.00 42.56 2.52
261 262 0.258774 GGGAGGGCCAAAGCATAGAA 59.741 55.000 6.18 0.00 42.56 2.10
262 263 0.624500 AGGGAGGGCCAAAGCATAGA 60.625 55.000 6.18 0.00 42.56 1.98
263 264 1.140312 TAGGGAGGGCCAAAGCATAG 58.860 55.000 6.18 0.00 42.56 2.23
264 265 1.214424 GTTAGGGAGGGCCAAAGCATA 59.786 52.381 6.18 0.00 42.56 3.14
265 266 0.033109 GTTAGGGAGGGCCAAAGCAT 60.033 55.000 6.18 0.00 42.56 3.79
266 267 1.382629 GTTAGGGAGGGCCAAAGCA 59.617 57.895 6.18 0.00 42.56 3.91
267 268 1.379977 GGTTAGGGAGGGCCAAAGC 60.380 63.158 6.18 0.00 35.15 3.51
268 269 0.034089 CAGGTTAGGGAGGGCCAAAG 60.034 60.000 6.18 0.00 35.15 2.77
269 270 0.774491 ACAGGTTAGGGAGGGCCAAA 60.774 55.000 6.18 0.00 35.15 3.28
270 271 0.774491 AACAGGTTAGGGAGGGCCAA 60.774 55.000 6.18 0.00 35.15 4.52
271 272 0.774491 AAACAGGTTAGGGAGGGCCA 60.774 55.000 6.18 0.00 35.15 5.36
272 273 0.408309 AAAACAGGTTAGGGAGGGCC 59.592 55.000 0.00 0.00 0.00 5.80
273 274 1.074889 TCAAAACAGGTTAGGGAGGGC 59.925 52.381 0.00 0.00 0.00 5.19
274 275 2.375509 AGTCAAAACAGGTTAGGGAGGG 59.624 50.000 0.00 0.00 0.00 4.30
275 276 3.412386 CAGTCAAAACAGGTTAGGGAGG 58.588 50.000 0.00 0.00 0.00 4.30
276 277 2.814336 GCAGTCAAAACAGGTTAGGGAG 59.186 50.000 0.00 0.00 0.00 4.30
277 278 2.173782 TGCAGTCAAAACAGGTTAGGGA 59.826 45.455 0.00 0.00 0.00 4.20
278 279 2.582052 TGCAGTCAAAACAGGTTAGGG 58.418 47.619 0.00 0.00 0.00 3.53
279 280 4.613622 CGATTGCAGTCAAAACAGGTTAGG 60.614 45.833 10.08 0.00 35.56 2.69
280 281 4.466828 CGATTGCAGTCAAAACAGGTTAG 58.533 43.478 10.08 0.00 35.56 2.34
281 282 3.304391 GCGATTGCAGTCAAAACAGGTTA 60.304 43.478 10.08 0.00 42.15 2.85
282 283 2.543653 GCGATTGCAGTCAAAACAGGTT 60.544 45.455 10.08 0.00 42.15 3.50
283 284 1.001378 GCGATTGCAGTCAAAACAGGT 60.001 47.619 10.08 0.00 42.15 4.00
284 285 1.666888 GGCGATTGCAGTCAAAACAGG 60.667 52.381 10.08 0.00 45.35 4.00
285 286 1.666888 GGGCGATTGCAGTCAAAACAG 60.667 52.381 10.08 0.00 45.35 3.16
286 287 0.313672 GGGCGATTGCAGTCAAAACA 59.686 50.000 10.08 0.00 45.35 2.83
287 288 0.388520 GGGGCGATTGCAGTCAAAAC 60.389 55.000 10.08 0.00 45.35 2.43
288 289 1.531739 GGGGGCGATTGCAGTCAAAA 61.532 55.000 10.08 0.00 45.35 2.44
289 290 1.976474 GGGGGCGATTGCAGTCAAA 60.976 57.895 10.08 0.00 45.35 2.69
290 291 2.361104 GGGGGCGATTGCAGTCAA 60.361 61.111 10.08 0.00 45.35 3.18
291 292 3.329889 AGGGGGCGATTGCAGTCA 61.330 61.111 10.08 0.00 45.35 3.41
292 293 2.615227 ATCAGGGGGCGATTGCAGTC 62.615 60.000 7.38 0.00 45.35 3.51
293 294 2.615227 GATCAGGGGGCGATTGCAGT 62.615 60.000 7.38 0.00 45.35 4.40
294 295 1.895707 GATCAGGGGGCGATTGCAG 60.896 63.158 7.38 0.00 45.35 4.41
295 296 2.192979 GATCAGGGGGCGATTGCA 59.807 61.111 7.38 0.00 45.35 4.08
296 297 2.595754 GGATCAGGGGGCGATTGC 60.596 66.667 0.00 0.00 41.71 3.56
297 298 0.395586 TTTGGATCAGGGGGCGATTG 60.396 55.000 0.00 0.00 0.00 2.67
298 299 0.557729 ATTTGGATCAGGGGGCGATT 59.442 50.000 0.00 0.00 0.00 3.34
299 300 0.557729 AATTTGGATCAGGGGGCGAT 59.442 50.000 0.00 0.00 0.00 4.58
300 301 0.334676 AAATTTGGATCAGGGGGCGA 59.665 50.000 0.00 0.00 0.00 5.54
301 302 1.136891 GAAAATTTGGATCAGGGGGCG 59.863 52.381 0.00 0.00 0.00 6.13
302 303 2.169144 CAGAAAATTTGGATCAGGGGGC 59.831 50.000 0.00 0.00 0.00 5.80
303 304 2.767960 CCAGAAAATTTGGATCAGGGGG 59.232 50.000 0.00 0.00 37.96 5.40
304 305 2.169144 GCCAGAAAATTTGGATCAGGGG 59.831 50.000 0.00 0.00 37.96 4.79
305 306 3.102204 AGCCAGAAAATTTGGATCAGGG 58.898 45.455 0.00 0.00 37.96 4.45
347 348 2.202756 GCTCCGAGCGGAATTCGT 60.203 61.111 13.15 0.00 44.66 3.85
366 367 2.512515 GATCACTGGCCGAGCACC 60.513 66.667 0.00 0.00 0.00 5.01
368 369 1.953231 CTCAGATCACTGGCCGAGCA 61.953 60.000 0.00 0.00 43.60 4.26
384 385 1.067060 CGAGCGTAATGGATGGACTCA 59.933 52.381 0.00 0.00 0.00 3.41
388 389 0.387929 GTCCGAGCGTAATGGATGGA 59.612 55.000 0.00 0.00 33.63 3.41
394 395 4.033932 TGAAATCAATGTCCGAGCGTAATG 59.966 41.667 0.00 0.00 0.00 1.90
395 396 4.188462 TGAAATCAATGTCCGAGCGTAAT 58.812 39.130 0.00 0.00 0.00 1.89
397 398 3.239587 TGAAATCAATGTCCGAGCGTA 57.760 42.857 0.00 0.00 0.00 4.42
399 400 3.680642 AATGAAATCAATGTCCGAGCG 57.319 42.857 0.00 0.00 0.00 5.03
409 410 8.618702 AAACATACATGGCAAAATGAAATCAA 57.381 26.923 12.32 0.00 0.00 2.57
452 453 6.498304 TGCAAAAGTTTGAAACAAAGCAAAA 58.502 28.000 11.02 0.00 40.55 2.44
465 466 6.471839 CAAACTGTCTGAATGCAAAAGTTTG 58.528 36.000 13.91 13.91 43.54 2.93
469 470 6.303970 CGATACAAACTGTCTGAATGCAAAAG 59.696 38.462 0.00 0.00 0.00 2.27
471 472 5.238432 ACGATACAAACTGTCTGAATGCAAA 59.762 36.000 0.00 0.00 0.00 3.68
472 473 4.754618 ACGATACAAACTGTCTGAATGCAA 59.245 37.500 0.00 0.00 0.00 4.08
473 474 4.314961 ACGATACAAACTGTCTGAATGCA 58.685 39.130 0.00 0.00 0.00 3.96
474 475 4.928661 ACGATACAAACTGTCTGAATGC 57.071 40.909 0.00 0.00 0.00 3.56
475 476 7.755582 TCATACGATACAAACTGTCTGAATG 57.244 36.000 0.00 0.00 0.00 2.67
476 477 7.379797 CGATCATACGATACAAACTGTCTGAAT 59.620 37.037 0.00 0.00 35.09 2.57
477 478 6.691388 CGATCATACGATACAAACTGTCTGAA 59.309 38.462 0.00 0.00 35.09 3.02
478 479 6.037830 TCGATCATACGATACAAACTGTCTGA 59.962 38.462 0.00 0.00 37.37 3.27
479 480 6.140895 GTCGATCATACGATACAAACTGTCTG 59.859 42.308 0.00 0.00 43.93 3.51
480 481 6.200100 GTCGATCATACGATACAAACTGTCT 58.800 40.000 0.00 0.00 43.93 3.41
481 482 5.113678 CGTCGATCATACGATACAAACTGTC 59.886 44.000 11.16 0.00 43.93 3.51
482 483 4.968181 CGTCGATCATACGATACAAACTGT 59.032 41.667 11.16 0.00 43.93 3.55
483 484 4.968181 ACGTCGATCATACGATACAAACTG 59.032 41.667 20.73 0.00 43.93 3.16
484 485 5.165911 ACGTCGATCATACGATACAAACT 57.834 39.130 20.73 0.00 43.93 2.66
485 486 5.903530 TGTACGTCGATCATACGATACAAAC 59.096 40.000 20.73 10.61 43.93 2.93
486 487 6.046885 TGTACGTCGATCATACGATACAAA 57.953 37.500 20.73 5.83 43.93 2.83
487 488 5.655893 TGTACGTCGATCATACGATACAA 57.344 39.130 20.73 9.56 43.93 2.41
488 489 5.406175 TCATGTACGTCGATCATACGATACA 59.594 40.000 20.73 20.98 43.93 2.29
489 490 5.850931 TCATGTACGTCGATCATACGATAC 58.149 41.667 20.73 17.56 43.93 2.24
490 491 6.470557 TTCATGTACGTCGATCATACGATA 57.529 37.500 20.73 9.17 43.93 2.92
491 492 5.352643 TTCATGTACGTCGATCATACGAT 57.647 39.130 20.73 9.95 43.93 3.73
492 493 4.799419 TTCATGTACGTCGATCATACGA 57.201 40.909 20.73 0.00 42.90 3.43
493 494 5.663054 GCAATTCATGTACGTCGATCATACG 60.663 44.000 14.21 14.21 45.64 3.06
494 495 5.174943 TGCAATTCATGTACGTCGATCATAC 59.825 40.000 0.00 0.00 0.00 2.39
495 496 5.285651 TGCAATTCATGTACGTCGATCATA 58.714 37.500 0.00 0.00 0.00 2.15
496 497 4.119136 TGCAATTCATGTACGTCGATCAT 58.881 39.130 0.00 0.00 0.00 2.45
497 498 3.516615 TGCAATTCATGTACGTCGATCA 58.483 40.909 0.00 0.00 0.00 2.92
498 499 4.448891 CATGCAATTCATGTACGTCGATC 58.551 43.478 0.00 0.00 45.79 3.69
499 500 4.457433 CATGCAATTCATGTACGTCGAT 57.543 40.909 0.00 0.00 45.79 3.59
500 501 3.923827 CATGCAATTCATGTACGTCGA 57.076 42.857 0.00 0.00 45.79 4.20
508 509 7.900440 TTGATCCTCAAATCCATGCAATTCATG 60.900 37.037 0.00 9.58 41.57 3.07
509 510 5.600898 TGATCCTCAAATCCATGCAATTCAT 59.399 36.000 0.00 0.00 35.31 2.57
510 511 4.957327 TGATCCTCAAATCCATGCAATTCA 59.043 37.500 0.00 0.00 0.00 2.57
511 512 5.524971 TGATCCTCAAATCCATGCAATTC 57.475 39.130 0.00 0.00 0.00 2.17
512 513 5.943349 TTGATCCTCAAATCCATGCAATT 57.057 34.783 0.00 0.00 32.71 2.32
513 514 5.943349 TTTGATCCTCAAATCCATGCAAT 57.057 34.783 0.00 0.00 41.02 3.56
514 515 5.741962 TTTTGATCCTCAAATCCATGCAA 57.258 34.783 3.36 0.00 44.75 4.08
515 516 5.943349 ATTTTGATCCTCAAATCCATGCA 57.057 34.783 3.36 0.00 44.75 3.96
516 517 6.596497 ACAAATTTTGATCCTCAAATCCATGC 59.404 34.615 15.81 0.00 44.75 4.06
517 518 7.820386 TCACAAATTTTGATCCTCAAATCCATG 59.180 33.333 15.81 0.00 44.75 3.66
518 519 7.909518 TCACAAATTTTGATCCTCAAATCCAT 58.090 30.769 15.81 0.00 44.75 3.41
519 520 7.300556 TCACAAATTTTGATCCTCAAATCCA 57.699 32.000 15.81 0.00 44.75 3.41
522 523 9.826574 CCATATCACAAATTTTGATCCTCAAAT 57.173 29.630 15.81 4.74 44.75 2.32
523 524 9.033711 TCCATATCACAAATTTTGATCCTCAAA 57.966 29.630 15.81 0.00 43.84 2.69
524 525 8.592529 TCCATATCACAAATTTTGATCCTCAA 57.407 30.769 15.81 3.68 35.31 3.02
525 526 8.635328 CATCCATATCACAAATTTTGATCCTCA 58.365 33.333 15.81 3.93 35.31 3.86
526 527 8.636213 ACATCCATATCACAAATTTTGATCCTC 58.364 33.333 15.81 0.00 35.31 3.71
527 528 8.418662 CACATCCATATCACAAATTTTGATCCT 58.581 33.333 15.81 0.92 35.31 3.24
528 529 7.170320 GCACATCCATATCACAAATTTTGATCC 59.830 37.037 15.81 0.00 35.31 3.36
529 530 7.096353 CGCACATCCATATCACAAATTTTGATC 60.096 37.037 15.81 0.00 35.31 2.92
530 531 6.698329 CGCACATCCATATCACAAATTTTGAT 59.302 34.615 15.81 15.45 37.47 2.57
531 532 6.035217 CGCACATCCATATCACAAATTTTGA 58.965 36.000 15.81 5.81 0.00 2.69
532 533 5.232626 CCGCACATCCATATCACAAATTTTG 59.767 40.000 7.59 7.59 0.00 2.44
533 534 5.350633 CCGCACATCCATATCACAAATTTT 58.649 37.500 0.00 0.00 0.00 1.82
534 535 4.737352 GCCGCACATCCATATCACAAATTT 60.737 41.667 0.00 0.00 0.00 1.82
535 536 3.243501 GCCGCACATCCATATCACAAATT 60.244 43.478 0.00 0.00 0.00 1.82
536 537 2.294233 GCCGCACATCCATATCACAAAT 59.706 45.455 0.00 0.00 0.00 2.32
537 538 1.675483 GCCGCACATCCATATCACAAA 59.325 47.619 0.00 0.00 0.00 2.83
538 539 1.308047 GCCGCACATCCATATCACAA 58.692 50.000 0.00 0.00 0.00 3.33
539 540 0.879839 CGCCGCACATCCATATCACA 60.880 55.000 0.00 0.00 0.00 3.58
540 541 1.862123 CGCCGCACATCCATATCAC 59.138 57.895 0.00 0.00 0.00 3.06
541 542 1.960763 GCGCCGCACATCCATATCA 60.961 57.895 3.15 0.00 0.00 2.15
542 543 1.506309 TTGCGCCGCACATCCATATC 61.506 55.000 13.21 0.00 38.71 1.63
543 544 0.890542 ATTGCGCCGCACATCCATAT 60.891 50.000 13.21 0.00 38.71 1.78
544 545 0.250081 TATTGCGCCGCACATCCATA 60.250 50.000 13.21 3.39 38.71 2.74
545 546 0.890542 ATATTGCGCCGCACATCCAT 60.891 50.000 13.21 4.58 38.71 3.41
546 547 1.100463 AATATTGCGCCGCACATCCA 61.100 50.000 13.21 0.00 38.71 3.41
547 548 0.030638 AAATATTGCGCCGCACATCC 59.969 50.000 13.21 0.00 38.71 3.51
548 549 1.122849 CAAATATTGCGCCGCACATC 58.877 50.000 13.21 0.00 38.71 3.06
549 550 0.737804 TCAAATATTGCGCCGCACAT 59.262 45.000 13.21 11.51 38.71 3.21
550 551 0.098552 CTCAAATATTGCGCCGCACA 59.901 50.000 13.21 2.37 38.71 4.57
551 552 0.592247 CCTCAAATATTGCGCCGCAC 60.592 55.000 13.21 0.00 38.71 5.34
552 553 1.723608 CCCTCAAATATTGCGCCGCA 61.724 55.000 8.16 8.16 36.47 5.69
553 554 1.008538 CCCTCAAATATTGCGCCGC 60.009 57.895 4.18 0.00 0.00 6.53
554 555 1.101049 ACCCCTCAAATATTGCGCCG 61.101 55.000 4.18 0.00 0.00 6.46
555 556 0.385390 CACCCCTCAAATATTGCGCC 59.615 55.000 4.18 0.00 0.00 6.53
556 557 0.249031 GCACCCCTCAAATATTGCGC 60.249 55.000 0.00 0.00 0.00 6.09
557 558 0.385390 GGCACCCCTCAAATATTGCG 59.615 55.000 0.00 0.00 0.00 4.85
558 559 1.410153 CAGGCACCCCTCAAATATTGC 59.590 52.381 0.00 0.00 40.33 3.56
559 560 2.034124 CCAGGCACCCCTCAAATATTG 58.966 52.381 0.00 0.00 40.33 1.90
560 561 1.645919 ACCAGGCACCCCTCAAATATT 59.354 47.619 0.00 0.00 40.33 1.28
561 562 1.215423 GACCAGGCACCCCTCAAATAT 59.785 52.381 0.00 0.00 40.33 1.28
562 563 0.623723 GACCAGGCACCCCTCAAATA 59.376 55.000 0.00 0.00 40.33 1.40
563 564 1.384191 GACCAGGCACCCCTCAAAT 59.616 57.895 0.00 0.00 40.33 2.32
564 565 1.650242 TTGACCAGGCACCCCTCAAA 61.650 55.000 0.00 0.00 40.33 2.69
565 566 1.434513 ATTGACCAGGCACCCCTCAA 61.435 55.000 0.00 0.00 40.33 3.02
566 567 1.852157 ATTGACCAGGCACCCCTCA 60.852 57.895 0.00 0.00 40.33 3.86
567 568 1.077429 GATTGACCAGGCACCCCTC 60.077 63.158 0.00 0.00 40.33 4.30
568 569 2.616458 GGATTGACCAGGCACCCCT 61.616 63.158 0.00 0.00 44.25 4.79
569 570 2.043953 GGATTGACCAGGCACCCC 60.044 66.667 0.00 0.00 38.79 4.95
570 571 2.043953 GGGATTGACCAGGCACCC 60.044 66.667 0.00 0.00 41.20 4.61
571 572 2.043953 GGGGATTGACCAGGCACC 60.044 66.667 0.00 0.00 41.20 5.01
572 573 2.763215 TGGGGATTGACCAGGCAC 59.237 61.111 0.00 0.00 41.20 5.01
577 578 1.863155 GCTTCCCTGGGGATTGACCA 61.863 60.000 14.00 0.00 44.74 4.02
578 579 1.076705 GCTTCCCTGGGGATTGACC 60.077 63.158 14.00 0.00 44.74 4.02
579 580 0.681243 GTGCTTCCCTGGGGATTGAC 60.681 60.000 14.00 2.92 44.74 3.18
580 581 0.846427 AGTGCTTCCCTGGGGATTGA 60.846 55.000 14.00 0.00 44.74 2.57
581 582 0.394899 GAGTGCTTCCCTGGGGATTG 60.395 60.000 14.00 6.96 44.74 2.67
582 583 0.846427 TGAGTGCTTCCCTGGGGATT 60.846 55.000 14.00 0.00 44.74 3.01
583 584 1.229951 TGAGTGCTTCCCTGGGGAT 60.230 57.895 14.00 0.00 44.74 3.85
584 585 1.920325 CTGAGTGCTTCCCTGGGGA 60.920 63.158 14.00 2.17 43.52 4.81
585 586 2.673523 CTGAGTGCTTCCCTGGGG 59.326 66.667 14.00 2.42 0.00 4.96
586 587 2.673523 CCTGAGTGCTTCCCTGGG 59.326 66.667 6.33 6.33 0.00 4.45
587 588 2.045536 GCCTGAGTGCTTCCCTGG 60.046 66.667 0.00 0.00 0.00 4.45
588 589 2.435586 CGCCTGAGTGCTTCCCTG 60.436 66.667 0.00 0.00 0.00 4.45
589 590 2.925170 ACGCCTGAGTGCTTCCCT 60.925 61.111 0.00 0.00 0.00 4.20
590 591 2.743928 CACGCCTGAGTGCTTCCC 60.744 66.667 0.00 0.00 35.17 3.97
591 592 2.029844 GACACGCCTGAGTGCTTCC 61.030 63.158 0.71 0.00 45.45 3.46
592 593 2.029844 GGACACGCCTGAGTGCTTC 61.030 63.158 0.71 0.00 45.45 3.86
593 594 2.031163 GGACACGCCTGAGTGCTT 59.969 61.111 0.71 0.00 45.45 3.91
594 595 4.363990 CGGACACGCCTGAGTGCT 62.364 66.667 0.71 0.00 45.45 4.40
606 607 2.733218 CTTCAACGCTCGCGGACA 60.733 61.111 16.18 0.00 44.69 4.02
620 621 3.147595 GGCAAATCCGGCCCCTTC 61.148 66.667 0.00 0.00 45.87 3.46
626 627 2.125952 GCACTTGGCAAATCCGGC 60.126 61.111 0.00 0.00 43.97 6.13
635 636 1.832167 TTGGACTTGGGCACTTGGC 60.832 57.895 0.00 0.00 43.74 4.52
636 637 0.468029 AGTTGGACTTGGGCACTTGG 60.468 55.000 0.00 0.00 0.00 3.61
637 638 0.670162 CAGTTGGACTTGGGCACTTG 59.330 55.000 0.00 0.00 0.00 3.16
638 639 0.258774 ACAGTTGGACTTGGGCACTT 59.741 50.000 0.00 0.00 0.00 3.16
639 640 1.072331 CTACAGTTGGACTTGGGCACT 59.928 52.381 0.00 0.00 0.00 4.40
640 641 1.071699 TCTACAGTTGGACTTGGGCAC 59.928 52.381 0.00 0.00 0.00 5.01
641 642 1.429930 TCTACAGTTGGACTTGGGCA 58.570 50.000 0.00 0.00 0.00 5.36
642 643 2.359900 CATCTACAGTTGGACTTGGGC 58.640 52.381 0.00 0.00 0.00 5.36
643 644 2.026822 AGCATCTACAGTTGGACTTGGG 60.027 50.000 0.00 0.00 0.00 4.12
652 653 3.327757 TGAACCTTGGAGCATCTACAGTT 59.672 43.478 0.00 0.00 33.73 3.16
655 656 2.906389 AGTGAACCTTGGAGCATCTACA 59.094 45.455 0.00 0.00 33.73 2.74
686 687 2.565834 CTCCCTCTACCGTCTCCAAAAA 59.434 50.000 0.00 0.00 0.00 1.94
691 692 1.829096 GCCTCCCTCTACCGTCTCC 60.829 68.421 0.00 0.00 0.00 3.71
775 1937 5.104941 TCAGCTTGTACTATGTTGCCTATGT 60.105 40.000 0.00 0.00 0.00 2.29
802 1966 0.249322 GATCAGGTTGCATGCATGGC 60.249 55.000 27.34 19.18 0.00 4.40
884 2048 0.477204 ATATCTGGGACGACGGAGGA 59.523 55.000 0.00 0.00 0.00 3.71
951 2126 1.480954 CGGGGGAGAAGAGATTTTCGA 59.519 52.381 0.00 0.00 32.33 3.71
1109 2326 4.651008 GGTCGACGAACGGGTGCA 62.651 66.667 9.92 0.00 42.82 4.57
1165 2382 3.494336 CTTGAGCGCCGCCTTGAG 61.494 66.667 4.98 0.00 0.00 3.02
1595 2812 1.821332 CTCAATTCCTCCCGCTGGC 60.821 63.158 0.00 0.00 0.00 4.85
1596 2813 1.153086 CCTCAATTCCTCCCGCTGG 60.153 63.158 0.00 0.00 0.00 4.85
1607 2824 1.147153 GCGAGCCTAGCCCTCAATT 59.853 57.895 8.71 0.00 0.00 2.32
1608 2825 2.825264 GCGAGCCTAGCCCTCAAT 59.175 61.111 8.71 0.00 0.00 2.57
1679 2896 1.442148 GCGGCGGAGAGGAAGTAAT 59.558 57.895 9.78 0.00 0.00 1.89
1680 2897 2.890371 GCGGCGGAGAGGAAGTAA 59.110 61.111 9.78 0.00 0.00 2.24
1681 2898 3.515286 CGCGGCGGAGAGGAAGTA 61.515 66.667 15.84 0.00 0.00 2.24
1920 3164 4.373116 AGGAGCGCGGCGAAGAAA 62.373 61.111 28.54 0.00 0.00 2.52
2465 3709 0.671781 GCAGACCGAGATGCAGTTGT 60.672 55.000 0.00 0.00 42.11 3.32
2769 4021 3.610040 TTGAACTCCATGTCGCTGTAT 57.390 42.857 0.00 0.00 0.00 2.29
3165 4449 6.264832 TGTTCACAGTTATGAAAACAAGCTG 58.735 36.000 0.00 0.00 40.22 4.24
3178 4462 2.872245 GCAAGTCTGCTGTTCACAGTTA 59.128 45.455 8.72 0.00 45.74 2.24
3249 4535 6.368516 ACATTGGATAAAGCAAAACAATTCCG 59.631 34.615 0.00 0.00 0.00 4.30
3295 4581 5.353938 GGTCAATTAATTCATGCATGCACT 58.646 37.500 25.37 9.74 0.00 4.40
3296 4582 4.207635 CGGTCAATTAATTCATGCATGCAC 59.792 41.667 25.37 4.94 0.00 4.57
3297 4583 4.142204 ACGGTCAATTAATTCATGCATGCA 60.142 37.500 25.04 25.04 0.00 3.96
3298 4584 4.207635 CACGGTCAATTAATTCATGCATGC 59.792 41.667 22.25 11.82 0.00 4.06
3299 4585 4.207635 GCACGGTCAATTAATTCATGCATG 59.792 41.667 21.07 21.07 0.00 4.06
3300 4586 4.362279 GCACGGTCAATTAATTCATGCAT 58.638 39.130 0.00 0.00 0.00 3.96
3311 4597 2.270352 TTCAGAAGGCACGGTCAATT 57.730 45.000 0.00 0.00 0.00 2.32
3326 4612 4.102035 GCTAAAGCTGTTGGGAATTCAG 57.898 45.455 7.93 0.00 38.21 3.02
3425 4714 4.990257 ACCATTGCAATCAAGAGAATTCG 58.010 39.130 9.53 0.00 35.37 3.34
3444 4733 6.895756 CCTTCTACCTATGCCAGTATATACCA 59.104 42.308 9.32 1.29 0.00 3.25
3445 4734 6.896307 ACCTTCTACCTATGCCAGTATATACC 59.104 42.308 9.32 0.00 0.00 2.73
3550 4839 6.146673 GGGAAATCAAAAAGCAATCTGTTCAG 59.853 38.462 0.00 0.00 0.00 3.02
3557 4846 6.019318 CGATGATGGGAAATCAAAAAGCAATC 60.019 38.462 0.00 0.00 0.00 2.67
3582 4871 6.097554 TCAGAAATCACTCCTTCATACTCTCC 59.902 42.308 0.00 0.00 0.00 3.71
3597 4892 3.428589 GCTGCCCAGAATTCAGAAATCAC 60.429 47.826 8.44 0.00 0.00 3.06
3602 4897 3.719268 TTAGCTGCCCAGAATTCAGAA 57.281 42.857 8.44 0.00 0.00 3.02
3603 4898 3.009473 AGTTTAGCTGCCCAGAATTCAGA 59.991 43.478 8.44 0.00 0.00 3.27
3621 4916 2.745968 ACCAAACACCCATGACAGTTT 58.254 42.857 0.00 0.00 34.78 2.66
3692 4987 4.224433 GCATGATGATGATAAAACAGGCG 58.776 43.478 0.00 0.00 0.00 5.52
3707 5005 1.596603 TCCGCATTAGTGGCATGATG 58.403 50.000 0.00 0.00 45.27 3.07
3708 5006 2.346766 TTCCGCATTAGTGGCATGAT 57.653 45.000 0.00 0.00 45.27 2.45
3709 5007 1.742831 GTTTCCGCATTAGTGGCATGA 59.257 47.619 0.00 0.00 45.27 3.07
3710 5008 1.745087 AGTTTCCGCATTAGTGGCATG 59.255 47.619 0.00 0.00 45.27 4.06
3711 5009 2.128771 AGTTTCCGCATTAGTGGCAT 57.871 45.000 0.00 0.00 45.27 4.40
3712 5010 1.904287 AAGTTTCCGCATTAGTGGCA 58.096 45.000 0.00 0.00 45.27 4.92
3778 5076 6.680810 CACTACAGAATGAATTTGCCAAAGA 58.319 36.000 0.00 0.00 39.69 2.52
3803 5101 4.609691 ACTGTTTACAAACGTGTTCCTG 57.390 40.909 0.00 0.00 41.74 3.86
3825 5125 1.065199 CAGGATGTGCAGGCTAAGGAA 60.065 52.381 0.00 0.00 0.00 3.36
3845 5149 5.007626 CAGTACCAACCACATACATGCATAC 59.992 44.000 0.00 0.00 0.00 2.39
3853 5157 9.609346 AGATTAATAACAGTACCAACCACATAC 57.391 33.333 0.00 0.00 0.00 2.39
3854 5158 9.607988 CAGATTAATAACAGTACCAACCACATA 57.392 33.333 0.00 0.00 0.00 2.29
3894 5221 1.493861 TCTGCATCTAGCTTCAGCCT 58.506 50.000 0.00 0.00 45.94 4.58
3941 5274 6.920569 ACTGTTAAGTGTGAAGTTAACCAG 57.079 37.500 0.88 11.07 38.04 4.00
3968 5301 9.968870 TGTTCGCCAAAATTTAGTTTTAGTAAT 57.031 25.926 0.00 0.00 37.93 1.89
4001 5334 8.503196 TGCTACTGCGTATATCCATTTTATTTG 58.497 33.333 0.00 0.00 43.34 2.32
4062 5395 2.413371 GCGGATGAGAGCAACTTGTTTC 60.413 50.000 0.00 0.00 0.00 2.78
4063 5396 1.537202 GCGGATGAGAGCAACTTGTTT 59.463 47.619 0.00 0.00 0.00 2.83
4069 5402 1.522580 GAGGGCGGATGAGAGCAAC 60.523 63.158 0.00 0.00 34.54 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.