Multiple sequence alignment - TraesCS1B01G367300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G367300 chr1B 100.000 4271 0 0 1 4271 597834286 597830016 0.000000e+00 7888.0
1 TraesCS1B01G367300 chr1A 90.325 1385 116 14 2164 3537 537532152 537533529 0.000000e+00 1799.0
2 TraesCS1B01G367300 chr1A 84.588 1382 131 52 732 2058 537530545 537531899 0.000000e+00 1297.0
3 TraesCS1B01G367300 chr1A 97.059 34 1 0 3788 3821 310359221 310359254 1.660000e-04 58.4
4 TraesCS1B01G367300 chr1A 92.105 38 2 1 3784 3821 91047549 91047513 8.000000e-03 52.8
5 TraesCS1B01G367300 chr1D 91.897 975 44 18 2839 3794 440409676 440408718 0.000000e+00 1330.0
6 TraesCS1B01G367300 chr1D 90.228 1054 49 22 861 1885 440411545 440410517 0.000000e+00 1327.0
7 TraesCS1B01G367300 chr1D 89.169 674 54 12 2166 2832 440410427 440409766 0.000000e+00 822.0
8 TraesCS1B01G367300 chr1D 93.827 405 24 1 1 404 440424406 440424002 3.650000e-170 608.0
9 TraesCS1B01G367300 chr1D 90.071 423 24 3 3849 4271 440408637 440408233 2.260000e-147 532.0
10 TraesCS1B01G367300 chr1D 86.538 208 21 4 489 692 440423637 440423433 5.560000e-54 222.0
11 TraesCS1B01G367300 chr1D 86.139 202 26 2 205 404 279202054 279202255 2.590000e-52 217.0
12 TraesCS1B01G367300 chr1D 92.771 83 5 1 405 486 440423952 440423870 7.500000e-23 119.0
13 TraesCS1B01G367300 chr1D 96.875 32 0 1 3784 3815 93124783 93124813 8.000000e-03 52.8
14 TraesCS1B01G367300 chr5D 91.748 206 17 0 1 206 416038284 416038079 1.940000e-73 287.0
15 TraesCS1B01G367300 chr5D 90.291 206 20 0 1 206 416039057 416038852 1.960000e-68 270.0
16 TraesCS1B01G367300 chr5D 93.333 75 4 1 416 490 416038853 416038780 4.520000e-20 110.0
17 TraesCS1B01G367300 chr5D 91.549 71 6 0 416 486 416038080 416038010 9.770000e-17 99.0
18 TraesCS1B01G367300 chr3B 88.119 202 22 2 205 404 737703536 737703737 5.520000e-59 239.0
19 TraesCS1B01G367300 chr2B 87.624 202 23 2 205 404 490937719 490937920 2.570000e-57 233.0
20 TraesCS1B01G367300 chr2B 100.000 30 0 0 3786 3815 601199827 601199856 5.970000e-04 56.5
21 TraesCS1B01G367300 chr6B 86.700 203 25 2 203 403 298337098 298336896 1.550000e-54 224.0
22 TraesCS1B01G367300 chr2D 85.854 205 27 2 202 404 628839423 628839627 2.590000e-52 217.0
23 TraesCS1B01G367300 chr2D 92.500 40 1 2 3778 3815 278358795 278358756 5.970000e-04 56.5
24 TraesCS1B01G367300 chr5B 85.714 203 27 2 204 404 59715600 59715802 3.350000e-51 213.0
25 TraesCS1B01G367300 chr5B 100.000 31 0 0 3787 3817 685949348 685949318 1.660000e-04 58.4
26 TraesCS1B01G367300 chr2A 84.729 203 29 2 204 404 593508748 593508546 7.240000e-48 202.0
27 TraesCS1B01G367300 chr7A 83.962 212 31 3 195 404 8889020 8889230 2.600000e-47 200.0
28 TraesCS1B01G367300 chr4B 92.308 39 2 1 3788 3825 87001516 87001478 2.000000e-03 54.7
29 TraesCS1B01G367300 chr7D 94.118 34 2 0 3788 3821 454088731 454088698 8.000000e-03 52.8
30 TraesCS1B01G367300 chr4D 87.234 47 4 1 3790 3834 426613958 426613912 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G367300 chr1B 597830016 597834286 4270 True 7888.000000 7888 100.000000 1 4271 1 chr1B.!!$R1 4270
1 TraesCS1B01G367300 chr1A 537530545 537533529 2984 False 1548.000000 1799 87.456500 732 3537 2 chr1A.!!$F2 2805
2 TraesCS1B01G367300 chr1D 440408233 440411545 3312 True 1002.750000 1330 90.341250 861 4271 4 chr1D.!!$R1 3410
3 TraesCS1B01G367300 chr1D 440423433 440424406 973 True 316.333333 608 91.045333 1 692 3 chr1D.!!$R2 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 1128 0.256752 TGTTCTCCTGGCCATCCATG 59.743 55.0 5.51 0.0 42.51 3.66 F
1384 1700 0.034059 CCTCGCCTCGCCTGATATTT 59.966 55.0 0.00 0.0 0.00 1.40 F
1766 2115 0.108138 CCAATGACACCGAGGAGTCC 60.108 60.0 15.27 0.0 35.39 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 2846 0.109272 TCGTCCATCGAACACTCTGC 60.109 55.000 0.0 0.0 45.98 4.26 R
2801 3369 1.662629 GCGGTGATGTGTTGATCAGAG 59.337 52.381 0.0 0.0 32.92 3.35 R
3579 4245 2.073056 TGCAAAGTACTACACGGCATG 58.927 47.619 0.0 0.0 31.57 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 7.772166 TCCATCAACAGATACACTTACAGTAG 58.228 38.462 0.00 0.00 0.00 2.57
66 67 6.735130 ACACTTACAGTAGATTTTTGGTTGC 58.265 36.000 0.00 0.00 0.00 4.17
172 173 9.907576 CAACTTCAACTTCGTATTCATTAGATC 57.092 33.333 0.00 0.00 0.00 2.75
177 178 8.074370 TCAACTTCGTATTCATTAGATCGTAGG 58.926 37.037 0.00 0.00 0.00 3.18
210 211 7.496346 TGATCTTATTTGGTTGTCTACTCCT 57.504 36.000 0.00 0.00 0.00 3.69
213 214 7.311092 TCTTATTTGGTTGTCTACTCCTTCA 57.689 36.000 0.00 0.00 0.00 3.02
223 225 7.664318 GGTTGTCTACTCCTTCATCCTTTAAAA 59.336 37.037 0.00 0.00 0.00 1.52
293 295 7.684529 TGGCCAAGTTTGTGGAAAAATATATT 58.315 30.769 0.61 0.00 41.65 1.28
373 375 7.871853 AGCCTACTAATTTAATGGCGTAAATG 58.128 34.615 6.72 0.29 44.42 2.32
377 379 9.445786 CTACTAATTTAATGGCGTAAATGTTGG 57.554 33.333 6.72 0.17 34.61 3.77
482 534 6.190287 CCGTTTCGGTCTTTTATATACGTC 57.810 41.667 0.00 0.00 42.73 4.34
486 538 8.323140 CGTTTCGGTCTTTTATATACGTCAATT 58.677 33.333 0.00 0.00 0.00 2.32
525 807 9.985318 GAAGATGTTAACTGAATTGAGATCAAG 57.015 33.333 7.22 0.00 39.47 3.02
587 869 1.846007 AATTAATTGACGCAGCCCCA 58.154 45.000 0.00 0.00 0.00 4.96
598 881 1.306997 CAGCCCCACCTCCTCCTAA 60.307 63.158 0.00 0.00 0.00 2.69
605 888 1.003051 ACCTCCTCCTAACGGGCAT 59.997 57.895 0.00 0.00 34.39 4.40
613 896 3.555168 CCTCCTAACGGGCATTGTATCTC 60.555 52.174 0.00 0.00 34.39 2.75
617 900 4.881850 CCTAACGGGCATTGTATCTCTTTT 59.118 41.667 0.00 0.00 0.00 2.27
618 901 5.357032 CCTAACGGGCATTGTATCTCTTTTT 59.643 40.000 0.00 0.00 0.00 1.94
642 925 5.826601 TTAACACAGTGCAATCAAAGTCA 57.173 34.783 0.00 0.00 0.00 3.41
647 930 5.532406 ACACAGTGCAATCAAAGTCACTTAT 59.468 36.000 0.00 0.00 37.66 1.73
653 936 9.618890 AGTGCAATCAAAGTCACTTATATACAT 57.381 29.630 0.00 0.00 36.48 2.29
702 988 5.102953 GCACATATGCCCTATCCTTATGA 57.897 43.478 1.58 0.00 46.97 2.15
703 989 5.121811 GCACATATGCCCTATCCTTATGAG 58.878 45.833 1.58 0.00 46.97 2.90
704 990 5.338708 GCACATATGCCCTATCCTTATGAGT 60.339 44.000 1.58 0.00 46.97 3.41
705 991 6.127054 GCACATATGCCCTATCCTTATGAGTA 60.127 42.308 1.58 0.00 46.97 2.59
706 992 7.419518 GCACATATGCCCTATCCTTATGAGTAT 60.420 40.741 1.58 0.00 46.97 2.12
707 993 8.147058 CACATATGCCCTATCCTTATGAGTATC 58.853 40.741 1.58 0.00 0.00 2.24
708 994 8.070604 ACATATGCCCTATCCTTATGAGTATCT 58.929 37.037 1.58 0.00 34.92 1.98
709 995 8.584157 CATATGCCCTATCCTTATGAGTATCTC 58.416 40.741 0.00 0.00 34.92 2.75
710 996 5.273208 TGCCCTATCCTTATGAGTATCTCC 58.727 45.833 0.00 0.00 34.92 3.71
711 997 4.339814 GCCCTATCCTTATGAGTATCTCCG 59.660 50.000 0.00 0.00 34.92 4.63
712 998 5.756918 CCCTATCCTTATGAGTATCTCCGA 58.243 45.833 0.00 0.00 34.92 4.55
713 999 6.369629 CCCTATCCTTATGAGTATCTCCGAT 58.630 44.000 0.00 0.00 34.92 4.18
714 1000 7.519057 CCCTATCCTTATGAGTATCTCCGATA 58.481 42.308 0.00 0.00 34.92 2.92
715 1001 7.663905 CCCTATCCTTATGAGTATCTCCGATAG 59.336 44.444 0.00 0.00 34.92 2.08
716 1002 8.433599 CCTATCCTTATGAGTATCTCCGATAGA 58.566 40.741 0.00 0.00 39.02 1.98
717 1003 9.268268 CTATCCTTATGAGTATCTCCGATAGAC 57.732 40.741 0.00 0.00 36.93 2.59
718 1004 7.260387 TCCTTATGAGTATCTCCGATAGACT 57.740 40.000 0.00 0.00 36.93 3.24
719 1005 8.376803 TCCTTATGAGTATCTCCGATAGACTA 57.623 38.462 0.00 0.00 36.93 2.59
720 1006 8.823794 TCCTTATGAGTATCTCCGATAGACTAA 58.176 37.037 0.00 0.00 36.93 2.24
721 1007 9.451002 CCTTATGAGTATCTCCGATAGACTAAA 57.549 37.037 0.00 0.00 36.93 1.85
723 1009 7.690952 ATGAGTATCTCCGATAGACTAAACC 57.309 40.000 0.00 0.00 36.93 3.27
724 1010 6.598503 TGAGTATCTCCGATAGACTAAACCA 58.401 40.000 0.00 0.00 36.93 3.67
725 1011 6.485984 TGAGTATCTCCGATAGACTAAACCAC 59.514 42.308 0.00 0.00 36.93 4.16
726 1012 6.603224 AGTATCTCCGATAGACTAAACCACT 58.397 40.000 0.00 0.00 36.93 4.00
727 1013 5.776173 ATCTCCGATAGACTAAACCACTG 57.224 43.478 0.00 0.00 36.93 3.66
728 1014 4.851843 TCTCCGATAGACTAAACCACTGA 58.148 43.478 0.00 0.00 39.76 3.41
729 1015 5.446860 TCTCCGATAGACTAAACCACTGAT 58.553 41.667 0.00 0.00 39.76 2.90
730 1016 5.892119 TCTCCGATAGACTAAACCACTGATT 59.108 40.000 0.00 0.00 39.76 2.57
734 1020 6.986817 CCGATAGACTAAACCACTGATTGAAT 59.013 38.462 0.00 0.00 39.76 2.57
740 1026 4.900635 AAACCACTGATTGAATATCGCC 57.099 40.909 0.00 0.00 0.00 5.54
742 1028 1.195448 CCACTGATTGAATATCGCCGC 59.805 52.381 0.00 0.00 0.00 6.53
749 1035 1.159713 TGAATATCGCCGCAAGCCTG 61.160 55.000 0.00 0.00 38.78 4.85
759 1045 2.860136 GCCGCAAGCCTGAAATAAATTC 59.140 45.455 0.00 0.00 35.32 2.17
824 1115 6.990798 TCCTGATCATGATATCACTGTTCTC 58.009 40.000 8.54 7.51 32.51 2.87
825 1116 6.014755 TCCTGATCATGATATCACTGTTCTCC 60.015 42.308 8.54 0.00 32.51 3.71
827 1118 6.756221 TGATCATGATATCACTGTTCTCCTG 58.244 40.000 8.54 0.00 30.92 3.86
828 1119 5.541953 TCATGATATCACTGTTCTCCTGG 57.458 43.478 7.78 0.00 0.00 4.45
834 1125 0.393537 CACTGTTCTCCTGGCCATCC 60.394 60.000 5.51 0.00 0.00 3.51
835 1126 0.842030 ACTGTTCTCCTGGCCATCCA 60.842 55.000 5.51 0.00 40.85 3.41
836 1127 0.549950 CTGTTCTCCTGGCCATCCAT 59.450 55.000 5.51 0.00 42.51 3.41
837 1128 0.256752 TGTTCTCCTGGCCATCCATG 59.743 55.000 5.51 0.00 42.51 3.66
838 1129 0.548031 GTTCTCCTGGCCATCCATGA 59.452 55.000 5.51 0.00 42.51 3.07
840 1131 1.228184 CTCCTGGCCATCCATGAGC 60.228 63.158 5.51 0.00 44.39 4.26
841 1132 1.695239 TCCTGGCCATCCATGAGCT 60.695 57.895 5.51 0.00 42.51 4.09
842 1133 1.528542 CCTGGCCATCCATGAGCTG 60.529 63.158 5.51 0.00 42.51 4.24
992 1291 1.816961 GCCTCGCCTCCATTCATCAAT 60.817 52.381 0.00 0.00 0.00 2.57
1029 1328 1.272769 ACTTCTTCCTTCCTCCGTTCG 59.727 52.381 0.00 0.00 0.00 3.95
1264 1563 1.437573 CGCGGTATGGAGCTCTTCA 59.562 57.895 14.64 4.20 0.00 3.02
1282 1589 3.667497 TCAAGCAGGTTAGACTGTCAG 57.333 47.619 10.88 0.00 40.59 3.51
1283 1590 3.230976 TCAAGCAGGTTAGACTGTCAGA 58.769 45.455 10.88 0.00 40.59 3.27
1284 1591 3.256879 TCAAGCAGGTTAGACTGTCAGAG 59.743 47.826 10.88 0.00 40.59 3.35
1285 1592 2.883026 AGCAGGTTAGACTGTCAGAGT 58.117 47.619 10.88 0.00 40.59 3.24
1299 1606 6.135290 CTGTCAGAGTCTGAGAGGATAAAG 57.865 45.833 30.66 11.51 44.70 1.85
1304 1611 8.908903 GTCAGAGTCTGAGAGGATAAAGATAAA 58.091 37.037 23.27 0.00 41.46 1.40
1311 1618 7.507616 TCTGAGAGGATAAAGATAAACCTCCTC 59.492 40.741 0.00 8.08 45.53 3.71
1319 1626 3.371965 AGATAAACCTCCTCTTACGCCA 58.628 45.455 0.00 0.00 0.00 5.69
1327 1634 0.814010 CCTCTTACGCCATTTCCCCG 60.814 60.000 0.00 0.00 0.00 5.73
1348 1664 3.522553 GCTCTGCTTCCGTAACTACAAT 58.477 45.455 0.00 0.00 0.00 2.71
1358 1674 6.446781 TCCGTAACTACAATTACAGAGGAG 57.553 41.667 0.00 0.00 35.18 3.69
1360 1676 5.163540 CCGTAACTACAATTACAGAGGAGCT 60.164 44.000 0.00 0.00 35.18 4.09
1381 1697 2.912542 CCCTCGCCTCGCCTGATA 60.913 66.667 0.00 0.00 0.00 2.15
1384 1700 0.034059 CCTCGCCTCGCCTGATATTT 59.966 55.000 0.00 0.00 0.00 1.40
1385 1701 1.423395 CTCGCCTCGCCTGATATTTC 58.577 55.000 0.00 0.00 0.00 2.17
1387 1703 1.412710 TCGCCTCGCCTGATATTTCTT 59.587 47.619 0.00 0.00 0.00 2.52
1388 1704 1.795286 CGCCTCGCCTGATATTTCTTC 59.205 52.381 0.00 0.00 0.00 2.87
1389 1705 2.147150 GCCTCGCCTGATATTTCTTCC 58.853 52.381 0.00 0.00 0.00 3.46
1390 1706 2.772287 CCTCGCCTGATATTTCTTCCC 58.228 52.381 0.00 0.00 0.00 3.97
1398 1714 2.025793 TGATATTTCTTCCCCCGTTGCA 60.026 45.455 0.00 0.00 0.00 4.08
1401 1717 1.710816 TTTCTTCCCCCGTTGCATTT 58.289 45.000 0.00 0.00 0.00 2.32
1511 1831 4.396166 CCTAATCCACCATTGTTGTCAGTC 59.604 45.833 0.00 0.00 0.00 3.51
1512 1832 1.877637 TCCACCATTGTTGTCAGTCG 58.122 50.000 0.00 0.00 0.00 4.18
1532 1855 4.511826 GTCGGTCAAAGAAACAAGATCACT 59.488 41.667 0.00 0.00 0.00 3.41
1564 1904 4.067896 GAGTGTTTTCAGATCTCTGGCAA 58.932 43.478 7.33 0.00 43.91 4.52
1576 1916 1.059584 TCTGGCAAAGGGGACTGTCA 61.060 55.000 10.38 0.00 42.68 3.58
1766 2115 0.108138 CCAATGACACCGAGGAGTCC 60.108 60.000 15.27 0.00 35.39 3.85
1820 2169 0.332972 GGGTGGAGGAAGCAAGGAAT 59.667 55.000 0.00 0.00 0.00 3.01
1858 2207 9.036671 GGCAATTCTCTTCTCTTTATACTGTAC 57.963 37.037 0.00 0.00 0.00 2.90
1886 2237 7.941795 AATTCAGTTATACCACGTATACAGC 57.058 36.000 3.32 0.00 31.71 4.40
1887 2238 6.704289 TTCAGTTATACCACGTATACAGCT 57.296 37.500 3.32 0.00 31.71 4.24
1888 2239 7.806409 TTCAGTTATACCACGTATACAGCTA 57.194 36.000 3.32 0.00 31.71 3.32
1889 2240 7.806409 TCAGTTATACCACGTATACAGCTAA 57.194 36.000 3.32 0.00 31.71 3.09
1890 2241 8.400184 TCAGTTATACCACGTATACAGCTAAT 57.600 34.615 3.32 0.00 31.71 1.73
1891 2242 8.294577 TCAGTTATACCACGTATACAGCTAATG 58.705 37.037 3.32 0.00 31.71 1.90
1893 2244 8.295288 AGTTATACCACGTATACAGCTAATGTC 58.705 37.037 3.32 0.00 42.70 3.06
1927 2281 3.441922 TGCAGAGTTTTGTTGTTAGTGCA 59.558 39.130 0.00 0.00 36.11 4.57
1928 2282 3.791353 GCAGAGTTTTGTTGTTAGTGCAC 59.209 43.478 9.40 9.40 0.00 4.57
1930 2284 5.398169 CAGAGTTTTGTTGTTAGTGCACAA 58.602 37.500 21.04 8.60 34.15 3.33
1944 2298 5.581126 AGTGCACAATTCAAGAACTTTGA 57.419 34.783 21.04 0.00 0.00 2.69
1956 2310 4.067972 AGAACTTTGACGTCAGCCTAAA 57.932 40.909 19.11 8.85 0.00 1.85
1971 2325 2.524306 CCTAAAATGGGCTGACAACCA 58.476 47.619 0.00 0.00 41.76 3.67
1982 2336 2.295909 GCTGACAACCAACCTGCAAATA 59.704 45.455 0.00 0.00 0.00 1.40
1986 2340 6.266168 TGACAACCAACCTGCAAATATAAG 57.734 37.500 0.00 0.00 0.00 1.73
2026 2380 8.503458 AATTGACTAACTGAAGATTGAGATGG 57.497 34.615 0.00 0.00 0.00 3.51
2027 2381 5.982356 TGACTAACTGAAGATTGAGATGGG 58.018 41.667 0.00 0.00 0.00 4.00
2069 2631 4.625311 ACAAACAAAGTAGCAAACAAGCAC 59.375 37.500 0.00 0.00 36.85 4.40
2070 2632 4.718940 AACAAAGTAGCAAACAAGCACT 57.281 36.364 0.00 0.00 36.85 4.40
2080 2642 1.972872 AACAAGCACTGTTCCCTCTG 58.027 50.000 0.00 0.00 45.50 3.35
2081 2643 0.536006 ACAAGCACTGTTCCCTCTGC 60.536 55.000 0.00 0.00 32.99 4.26
2088 2650 1.707427 ACTGTTCCCTCTGCCAGAAAT 59.293 47.619 0.00 0.00 0.00 2.17
2124 2686 8.114331 ACATATGTGTGTGATTTCTGATTTGT 57.886 30.769 7.78 0.00 37.14 2.83
2125 2687 8.579006 ACATATGTGTGTGATTTCTGATTTGTT 58.421 29.630 7.78 0.00 37.14 2.83
2126 2688 9.414295 CATATGTGTGTGATTTCTGATTTGTTT 57.586 29.630 0.00 0.00 0.00 2.83
2127 2689 9.985730 ATATGTGTGTGATTTCTGATTTGTTTT 57.014 25.926 0.00 0.00 0.00 2.43
2128 2690 8.721019 ATGTGTGTGATTTCTGATTTGTTTTT 57.279 26.923 0.00 0.00 0.00 1.94
2129 2691 7.961855 TGTGTGTGATTTCTGATTTGTTTTTG 58.038 30.769 0.00 0.00 0.00 2.44
2130 2692 7.601886 TGTGTGTGATTTCTGATTTGTTTTTGT 59.398 29.630 0.00 0.00 0.00 2.83
2131 2693 8.442384 GTGTGTGATTTCTGATTTGTTTTTGTT 58.558 29.630 0.00 0.00 0.00 2.83
2132 2694 8.997323 TGTGTGATTTCTGATTTGTTTTTGTTT 58.003 25.926 0.00 0.00 0.00 2.83
2133 2695 9.824534 GTGTGATTTCTGATTTGTTTTTGTTTT 57.175 25.926 0.00 0.00 0.00 2.43
2161 2723 3.810310 TTTTTGCGGGAAGTGTGATTT 57.190 38.095 0.00 0.00 0.00 2.17
2162 2724 3.363341 TTTTGCGGGAAGTGTGATTTC 57.637 42.857 0.00 0.00 0.00 2.17
2163 2725 2.270352 TTGCGGGAAGTGTGATTTCT 57.730 45.000 0.00 0.00 0.00 2.52
2164 2726 1.522668 TGCGGGAAGTGTGATTTCTG 58.477 50.000 0.00 0.00 0.00 3.02
2165 2727 1.071542 TGCGGGAAGTGTGATTTCTGA 59.928 47.619 0.00 0.00 0.00 3.27
2166 2728 2.290260 TGCGGGAAGTGTGATTTCTGAT 60.290 45.455 0.00 0.00 0.00 2.90
2173 2735 6.239008 GGGAAGTGTGATTTCTGATTTGTTGA 60.239 38.462 0.00 0.00 0.00 3.18
2239 2802 7.359264 CGACATGTAGAACTTTTTGGTACTCTG 60.359 40.741 0.00 0.00 0.00 3.35
2256 2819 4.614673 GTGCAACAACTCCAAGCG 57.385 55.556 0.00 0.00 36.32 4.68
2257 2820 1.008538 GTGCAACAACTCCAAGCGG 60.009 57.895 0.00 0.00 36.32 5.52
2293 2856 1.499056 CGCCATGTGCAGAGTGTTC 59.501 57.895 6.92 0.00 41.33 3.18
2294 2857 1.499056 GCCATGTGCAGAGTGTTCG 59.501 57.895 0.00 0.00 40.77 3.95
2295 2858 0.950555 GCCATGTGCAGAGTGTTCGA 60.951 55.000 0.00 0.00 40.77 3.71
2296 2859 1.730501 CCATGTGCAGAGTGTTCGAT 58.269 50.000 0.00 0.00 0.00 3.59
2300 2865 1.071605 GTGCAGAGTGTTCGATGGAC 58.928 55.000 0.00 0.00 0.00 4.02
2317 2882 3.869065 TGGACGATCAAATGGTAACTCC 58.131 45.455 0.00 0.00 37.61 3.85
2320 2885 4.332819 GGACGATCAAATGGTAACTCCTTG 59.667 45.833 0.00 0.00 37.07 3.61
2327 2892 7.214467 TCAAATGGTAACTCCTTGTGAATTC 57.786 36.000 0.00 0.00 35.49 2.17
2328 2893 5.880054 AATGGTAACTCCTTGTGAATTCG 57.120 39.130 0.04 0.00 37.07 3.34
2469 3035 6.368791 TCTGATCTGTGTCCTTGTAAATTTCG 59.631 38.462 0.00 0.00 0.00 3.46
2471 3037 4.710324 TCTGTGTCCTTGTAAATTTCGGT 58.290 39.130 0.00 0.00 0.00 4.69
2569 3136 4.758688 TCTATGCATCATTATACGCTGGG 58.241 43.478 0.19 0.00 0.00 4.45
2618 3185 5.694231 TGATTGAACAATCTCTGTGTTGG 57.306 39.130 22.35 0.00 45.55 3.77
2627 3194 1.337703 TCTCTGTGTTGGCATTTGTGC 59.662 47.619 0.00 0.00 0.00 4.57
2646 3213 5.016173 TGTGCTCTTGTTTAGGCCATTTAT 58.984 37.500 5.01 0.00 0.00 1.40
2801 3369 7.573968 AAGTCCATAGATTGCAGGAATAAAC 57.426 36.000 0.00 0.00 0.00 2.01
2996 3649 6.295719 ACTTACCACACTATAAACTCCCTG 57.704 41.667 0.00 0.00 0.00 4.45
3007 3660 7.595502 CACTATAAACTCCCTGCGTTCTAATAG 59.404 40.741 0.00 0.00 0.00 1.73
3055 3708 0.108615 CGGAACAGAAGGACGCAGAT 60.109 55.000 0.00 0.00 0.00 2.90
3140 3793 1.003233 CCCCTTACACCTGGTTCAGAC 59.997 57.143 0.00 0.00 32.44 3.51
3142 3795 2.289694 CCCTTACACCTGGTTCAGACTG 60.290 54.545 0.00 0.00 32.44 3.51
3266 3919 2.283529 GCAACTGGACCCTCGAGGA 61.284 63.158 33.39 11.94 39.89 3.71
3285 3938 7.671302 TCGAGGAATAGGAATCTTGAAATAGG 58.329 38.462 0.00 0.00 0.00 2.57
3359 4012 2.521958 TTACAGAGAAGGCAGCCGGC 62.522 60.000 21.89 21.89 43.74 6.13
3537 4194 5.599999 ACCGAACTAGCTGAACATAAGAT 57.400 39.130 0.00 0.00 0.00 2.40
3538 4195 5.352284 ACCGAACTAGCTGAACATAAGATG 58.648 41.667 0.00 0.00 0.00 2.90
3539 4196 5.127194 ACCGAACTAGCTGAACATAAGATGA 59.873 40.000 0.00 0.00 0.00 2.92
3540 4197 6.183360 ACCGAACTAGCTGAACATAAGATGAT 60.183 38.462 0.00 0.00 0.00 2.45
3542 4199 7.225538 CCGAACTAGCTGAACATAAGATGATTT 59.774 37.037 0.00 0.00 0.00 2.17
3543 4200 8.607459 CGAACTAGCTGAACATAAGATGATTTT 58.393 33.333 0.00 0.00 0.00 1.82
3548 4205 8.571461 AGCTGAACATAAGATGATTTTTCTCA 57.429 30.769 0.00 0.00 0.00 3.27
3579 4245 1.098050 CCAACAGAGCAAGTATGGGC 58.902 55.000 0.00 0.00 0.00 5.36
3581 4247 2.372264 CAACAGAGCAAGTATGGGCAT 58.628 47.619 0.00 0.00 0.00 4.40
3585 4251 1.789078 GAGCAAGTATGGGCATGCCG 61.789 60.000 29.90 15.43 39.59 5.69
3592 4258 1.069513 GTATGGGCATGCCGTGTAGTA 59.930 52.381 29.90 12.88 36.85 1.82
3594 4260 1.261938 TGGGCATGCCGTGTAGTACT 61.262 55.000 29.90 0.00 36.85 2.73
3595 4261 0.107848 GGGCATGCCGTGTAGTACTT 60.108 55.000 29.90 0.00 36.85 2.24
3596 4262 1.677820 GGGCATGCCGTGTAGTACTTT 60.678 52.381 29.90 0.00 36.85 2.66
3622 4288 1.605500 CGTGTGCATTGTGTATGTGC 58.394 50.000 0.00 0.00 36.57 4.57
3627 4293 2.164017 GTGCATTGTGTATGTGCCATGA 59.836 45.455 0.00 0.00 38.06 3.07
3640 4309 2.553602 GTGCCATGAACACATGTTGAGA 59.446 45.455 12.37 0.00 39.53 3.27
3642 4311 4.395854 GTGCCATGAACACATGTTGAGATA 59.604 41.667 12.37 0.00 39.53 1.98
3646 4315 7.037438 GCCATGAACACATGTTGAGATATTTT 58.963 34.615 1.07 0.00 39.53 1.82
3717 4389 1.474498 GGACGTCACCTCAGGTTGTTT 60.474 52.381 18.91 0.00 31.02 2.83
3719 4391 0.859232 CGTCACCTCAGGTTGTTTCG 59.141 55.000 0.00 0.00 31.02 3.46
3721 4393 2.557317 GTCACCTCAGGTTGTTTCGAA 58.443 47.619 0.00 0.00 31.02 3.71
3722 4394 2.544267 GTCACCTCAGGTTGTTTCGAAG 59.456 50.000 0.00 0.00 31.02 3.79
3743 4415 0.861837 CTTCTATTCATGGCGGTCGC 59.138 55.000 6.83 6.83 41.06 5.19
3755 4427 1.446272 CGGTCGCCTGGTTCTCTTC 60.446 63.158 0.00 0.00 0.00 2.87
3756 4428 1.079057 GGTCGCCTGGTTCTCTTCC 60.079 63.158 0.00 0.00 0.00 3.46
3766 4438 4.041691 CCTGGTTCTCTTCCAAGGAAAGTA 59.958 45.833 2.78 0.00 34.35 2.24
3769 4441 4.041815 GGTTCTCTTCCAAGGAAAGTAGGT 59.958 45.833 2.78 0.00 33.34 3.08
3785 4457 4.761975 AGTAGGTGTCGAAGTGTTTTTCA 58.238 39.130 0.00 0.00 0.00 2.69
3799 4471 5.758924 GTGTTTTTCACAATGTACTCCCTC 58.241 41.667 0.00 0.00 45.51 4.30
3800 4472 4.825085 TGTTTTTCACAATGTACTCCCTCC 59.175 41.667 0.00 0.00 29.87 4.30
3801 4473 3.328382 TTTCACAATGTACTCCCTCCG 57.672 47.619 0.00 0.00 0.00 4.63
3802 4474 1.933021 TCACAATGTACTCCCTCCGT 58.067 50.000 0.00 0.00 0.00 4.69
3803 4475 1.822990 TCACAATGTACTCCCTCCGTC 59.177 52.381 0.00 0.00 0.00 4.79
3804 4476 1.134788 CACAATGTACTCCCTCCGTCC 60.135 57.143 0.00 0.00 0.00 4.79
3805 4477 0.464452 CAATGTACTCCCTCCGTCCC 59.536 60.000 0.00 0.00 0.00 4.46
3806 4478 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3807 4479 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
3808 4480 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
3809 4481 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
3810 4482 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
3811 4483 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
3812 4484 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3813 4485 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3814 4486 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3815 4487 4.776308 ACTCCCTCCGTCCCATAATATAAC 59.224 45.833 0.00 0.00 0.00 1.89
3816 4488 4.754311 TCCCTCCGTCCCATAATATAACA 58.246 43.478 0.00 0.00 0.00 2.41
3817 4489 4.775780 TCCCTCCGTCCCATAATATAACAG 59.224 45.833 0.00 0.00 0.00 3.16
3818 4490 4.530946 CCCTCCGTCCCATAATATAACAGT 59.469 45.833 0.00 0.00 0.00 3.55
3819 4491 5.479306 CCTCCGTCCCATAATATAACAGTG 58.521 45.833 0.00 0.00 0.00 3.66
3820 4492 5.011738 CCTCCGTCCCATAATATAACAGTGT 59.988 44.000 0.00 0.00 0.00 3.55
3821 4493 5.849510 TCCGTCCCATAATATAACAGTGTG 58.150 41.667 0.00 0.00 0.00 3.82
3822 4494 5.599242 TCCGTCCCATAATATAACAGTGTGA 59.401 40.000 0.00 0.00 0.00 3.58
3823 4495 5.694910 CCGTCCCATAATATAACAGTGTGAC 59.305 44.000 0.00 0.00 0.00 3.67
3824 4496 6.277605 CGTCCCATAATATAACAGTGTGACA 58.722 40.000 0.00 0.00 0.00 3.58
3825 4497 6.420903 CGTCCCATAATATAACAGTGTGACAG 59.579 42.308 0.00 0.00 0.00 3.51
3826 4498 7.272978 GTCCCATAATATAACAGTGTGACAGT 58.727 38.462 0.00 0.00 0.00 3.55
3860 4582 6.452242 ACACGTAATTTCTATGACAGTGTGA 58.548 36.000 0.00 0.00 34.49 3.58
3905 4627 4.336280 GACATGGGGCCTAGATTTTATCC 58.664 47.826 0.84 0.00 0.00 2.59
3929 4651 4.365111 AGGCCCCTGCAATGCGAA 62.365 61.111 0.00 0.00 40.13 4.70
3950 4672 6.511767 GCGAATAACAATCCTGGTATCAAGTG 60.512 42.308 0.00 0.00 34.15 3.16
3951 4673 6.761242 CGAATAACAATCCTGGTATCAAGTGA 59.239 38.462 0.00 0.00 34.15 3.41
3952 4674 7.279981 CGAATAACAATCCTGGTATCAAGTGAA 59.720 37.037 0.00 0.00 34.15 3.18
3953 4675 8.511604 AATAACAATCCTGGTATCAAGTGAAG 57.488 34.615 0.00 0.00 34.15 3.02
3954 4676 5.505181 ACAATCCTGGTATCAAGTGAAGT 57.495 39.130 0.00 0.00 0.00 3.01
3955 4677 5.248640 ACAATCCTGGTATCAAGTGAAGTG 58.751 41.667 0.00 0.00 0.00 3.16
3956 4678 3.981071 TCCTGGTATCAAGTGAAGTGG 57.019 47.619 0.00 0.00 0.00 4.00
3957 4679 3.516586 TCCTGGTATCAAGTGAAGTGGA 58.483 45.455 0.00 0.00 0.00 4.02
3958 4680 3.907474 TCCTGGTATCAAGTGAAGTGGAA 59.093 43.478 0.00 0.00 0.00 3.53
3959 4681 4.349636 TCCTGGTATCAAGTGAAGTGGAAA 59.650 41.667 0.00 0.00 0.00 3.13
3960 4682 4.697352 CCTGGTATCAAGTGAAGTGGAAAG 59.303 45.833 0.00 0.00 0.00 2.62
3961 4683 4.651778 TGGTATCAAGTGAAGTGGAAAGG 58.348 43.478 0.00 0.00 0.00 3.11
3962 4684 4.349636 TGGTATCAAGTGAAGTGGAAAGGA 59.650 41.667 0.00 0.00 0.00 3.36
3963 4685 4.938226 GGTATCAAGTGAAGTGGAAAGGAG 59.062 45.833 0.00 0.00 0.00 3.69
3964 4686 2.851195 TCAAGTGAAGTGGAAAGGAGC 58.149 47.619 0.00 0.00 0.00 4.70
3965 4687 2.439507 TCAAGTGAAGTGGAAAGGAGCT 59.560 45.455 0.00 0.00 0.00 4.09
3966 4688 2.551459 CAAGTGAAGTGGAAAGGAGCTG 59.449 50.000 0.00 0.00 0.00 4.24
3967 4689 1.771255 AGTGAAGTGGAAAGGAGCTGT 59.229 47.619 0.00 0.00 0.00 4.40
3970 4692 2.092429 TGAAGTGGAAAGGAGCTGTTGT 60.092 45.455 0.00 0.00 0.00 3.32
3997 4719 0.322546 GGTGGCCTCTTGAACGGAAT 60.323 55.000 3.32 0.00 0.00 3.01
4004 4726 2.939103 CCTCTTGAACGGAATCCACATC 59.061 50.000 0.00 0.00 0.00 3.06
4035 4757 3.318839 CACAGGGAACTTTCAGATTGCAA 59.681 43.478 0.00 0.00 40.21 4.08
4039 4761 6.096001 ACAGGGAACTTTCAGATTGCAATATC 59.904 38.462 12.97 1.28 40.21 1.63
4076 4798 9.865321 ATAGAGTTGGTTGATTTGAATGAAATG 57.135 29.630 0.00 0.00 34.18 2.32
4079 4801 9.211485 GAGTTGGTTGATTTGAATGAAATGAAT 57.789 29.630 0.00 0.00 34.18 2.57
4107 4829 8.840321 ACAGATTTAGGTATGCATTATGTCAAC 58.160 33.333 3.54 0.00 0.00 3.18
4109 4831 5.666969 TTAGGTATGCATTATGTCAACGC 57.333 39.130 3.54 0.00 0.00 4.84
4145 4867 9.138596 ACCCTTAAGCTAATAGTTTGAAAAACA 57.861 29.630 5.72 0.00 0.00 2.83
4182 4904 6.595326 TGAAACAGAGGAAGTACATGCTAATG 59.405 38.462 0.00 0.00 39.89 1.90
4254 4976 4.885325 ACCAACCTTCGAACAACATAGTTT 59.115 37.500 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.150296 TGTATCTGTTGATGGATGTTATGTAGG 58.850 37.037 0.00 0.00 34.32 3.18
54 55 6.648725 TGTAGCTTTAATGGCAACCAAAAATC 59.351 34.615 0.00 0.00 36.95 2.17
94 95 6.939163 AGATCATTAACAAGAGGACATATGCC 59.061 38.462 1.58 5.36 0.00 4.40
172 173 8.721478 CCAAATAAGATCAAATATCCACCTACG 58.279 37.037 0.00 0.00 0.00 3.51
177 178 9.736023 GACAACCAAATAAGATCAAATATCCAC 57.264 33.333 0.00 0.00 0.00 4.02
223 225 9.403583 TCCTTCAATAAAGTTGAAAGTACACTT 57.596 29.630 0.00 0.00 37.89 3.16
342 344 9.734984 ACGCCATTAAATTAGTAGGCTTATATT 57.265 29.630 0.00 0.00 39.91 1.28
349 351 7.645402 ACATTTACGCCATTAAATTAGTAGGC 58.355 34.615 0.00 0.00 38.73 3.93
350 352 9.445786 CAACATTTACGCCATTAAATTAGTAGG 57.554 33.333 0.00 0.00 30.65 3.18
361 363 5.652994 AATACACCAACATTTACGCCATT 57.347 34.783 0.00 0.00 0.00 3.16
393 395 1.747355 TCCCTCCGTCTTTGATCGTAC 59.253 52.381 0.00 0.00 0.00 3.67
398 400 2.103263 GCATACTCCCTCCGTCTTTGAT 59.897 50.000 0.00 0.00 0.00 2.57
460 512 6.795053 TGACGTATATAAAAGACCGAAACG 57.205 37.500 0.00 0.00 0.00 3.60
495 777 8.601845 TCTCAATTCAGTTAACATCTTCGAAA 57.398 30.769 8.61 0.00 0.00 3.46
559 841 5.173854 GCTGCGTCAATTAATTTGAATAGGC 59.826 40.000 0.00 1.06 45.71 3.93
562 844 5.451242 GGGGCTGCGTCAATTAATTTGAATA 60.451 40.000 0.00 0.00 45.71 1.75
587 869 0.620700 AATGCCCGTTAGGAGGAGGT 60.621 55.000 0.00 0.00 41.02 3.85
593 876 3.305720 AGAGATACAATGCCCGTTAGGA 58.694 45.455 0.00 0.00 41.02 2.94
617 900 7.062839 GTGACTTTGATTGCACTGTGTTAAAAA 59.937 33.333 9.86 4.16 0.00 1.94
618 901 6.529829 GTGACTTTGATTGCACTGTGTTAAAA 59.470 34.615 9.86 3.53 0.00 1.52
619 902 6.033341 GTGACTTTGATTGCACTGTGTTAAA 58.967 36.000 9.86 2.71 0.00 1.52
665 948 5.288232 GCATATGTGCGTGCTTTCATAAAAA 59.712 36.000 4.29 0.00 42.28 1.94
666 949 4.797868 GCATATGTGCGTGCTTTCATAAAA 59.202 37.500 4.29 0.00 42.28 1.52
668 954 3.951306 GCATATGTGCGTGCTTTCATAA 58.049 40.909 4.29 0.00 42.28 1.90
685 971 7.069986 GGAGATACTCATAAGGATAGGGCATA 58.930 42.308 0.00 0.00 31.08 3.14
687 973 5.273208 GGAGATACTCATAAGGATAGGGCA 58.727 45.833 0.00 0.00 31.08 5.36
692 978 8.994500 AGTCTATCGGAGATACTCATAAGGATA 58.006 37.037 0.00 0.00 45.12 2.59
693 979 7.867921 AGTCTATCGGAGATACTCATAAGGAT 58.132 38.462 0.00 0.00 45.12 3.24
694 980 7.260387 AGTCTATCGGAGATACTCATAAGGA 57.740 40.000 0.00 0.00 45.12 3.36
695 981 9.451002 TTTAGTCTATCGGAGATACTCATAAGG 57.549 37.037 0.00 0.00 45.12 2.69
697 983 9.228949 GGTTTAGTCTATCGGAGATACTCATAA 57.771 37.037 0.00 0.00 45.12 1.90
698 984 8.380867 TGGTTTAGTCTATCGGAGATACTCATA 58.619 37.037 0.00 0.00 45.12 2.15
699 985 7.175293 GTGGTTTAGTCTATCGGAGATACTCAT 59.825 40.741 0.00 0.00 45.12 2.90
700 986 6.485984 GTGGTTTAGTCTATCGGAGATACTCA 59.514 42.308 0.00 0.00 45.12 3.41
701 987 6.711645 AGTGGTTTAGTCTATCGGAGATACTC 59.288 42.308 0.00 0.00 45.12 2.59
702 988 6.487331 CAGTGGTTTAGTCTATCGGAGATACT 59.513 42.308 0.00 0.00 45.12 2.12
703 989 6.485984 TCAGTGGTTTAGTCTATCGGAGATAC 59.514 42.308 0.00 0.00 45.12 2.24
704 990 6.598503 TCAGTGGTTTAGTCTATCGGAGATA 58.401 40.000 0.00 0.00 45.12 1.98
705 991 5.446860 TCAGTGGTTTAGTCTATCGGAGAT 58.553 41.667 0.00 0.00 45.12 2.75
706 992 4.851843 TCAGTGGTTTAGTCTATCGGAGA 58.148 43.478 0.00 0.00 45.75 3.71
707 993 5.776173 ATCAGTGGTTTAGTCTATCGGAG 57.224 43.478 0.00 0.00 0.00 4.63
708 994 5.655090 TCAATCAGTGGTTTAGTCTATCGGA 59.345 40.000 0.00 0.00 0.00 4.55
709 995 5.902681 TCAATCAGTGGTTTAGTCTATCGG 58.097 41.667 0.00 0.00 0.00 4.18
710 996 9.698309 ATATTCAATCAGTGGTTTAGTCTATCG 57.302 33.333 0.00 0.00 0.00 2.92
712 998 9.698309 CGATATTCAATCAGTGGTTTAGTCTAT 57.302 33.333 0.00 0.00 0.00 1.98
713 999 7.652105 GCGATATTCAATCAGTGGTTTAGTCTA 59.348 37.037 0.00 0.00 0.00 2.59
714 1000 6.480320 GCGATATTCAATCAGTGGTTTAGTCT 59.520 38.462 0.00 0.00 0.00 3.24
715 1001 6.292919 GGCGATATTCAATCAGTGGTTTAGTC 60.293 42.308 0.00 0.00 0.00 2.59
716 1002 5.527582 GGCGATATTCAATCAGTGGTTTAGT 59.472 40.000 0.00 0.00 0.00 2.24
717 1003 5.333339 CGGCGATATTCAATCAGTGGTTTAG 60.333 44.000 0.00 0.00 0.00 1.85
718 1004 4.509970 CGGCGATATTCAATCAGTGGTTTA 59.490 41.667 0.00 0.00 0.00 2.01
719 1005 3.312421 CGGCGATATTCAATCAGTGGTTT 59.688 43.478 0.00 0.00 0.00 3.27
720 1006 2.872245 CGGCGATATTCAATCAGTGGTT 59.128 45.455 0.00 0.00 0.00 3.67
721 1007 2.483876 CGGCGATATTCAATCAGTGGT 58.516 47.619 0.00 0.00 0.00 4.16
722 1008 1.195448 GCGGCGATATTCAATCAGTGG 59.805 52.381 12.98 0.00 0.00 4.00
723 1009 1.866601 TGCGGCGATATTCAATCAGTG 59.133 47.619 12.98 0.00 0.00 3.66
724 1010 2.238942 TGCGGCGATATTCAATCAGT 57.761 45.000 12.98 0.00 0.00 3.41
725 1011 2.663879 GCTTGCGGCGATATTCAATCAG 60.664 50.000 12.98 0.00 0.00 2.90
726 1012 1.264020 GCTTGCGGCGATATTCAATCA 59.736 47.619 12.98 0.00 0.00 2.57
727 1013 1.400242 GGCTTGCGGCGATATTCAATC 60.400 52.381 12.98 0.00 42.94 2.67
728 1014 0.593128 GGCTTGCGGCGATATTCAAT 59.407 50.000 12.98 0.00 42.94 2.57
729 1015 0.463654 AGGCTTGCGGCGATATTCAA 60.464 50.000 12.98 3.58 42.94 2.69
730 1016 1.146041 AGGCTTGCGGCGATATTCA 59.854 52.632 12.98 0.00 42.94 2.57
734 1020 0.463654 ATTTCAGGCTTGCGGCGATA 60.464 50.000 12.98 0.00 42.94 2.92
740 1026 6.464895 TTTTGAATTTATTTCAGGCTTGCG 57.535 33.333 0.00 0.00 44.90 4.85
800 1086 6.014755 GGAGAACAGTGATATCATGATCAGGA 60.015 42.308 13.16 13.16 36.51 3.86
801 1087 6.014413 AGGAGAACAGTGATATCATGATCAGG 60.014 42.308 12.53 0.00 36.51 3.86
803 1089 6.239515 CCAGGAGAACAGTGATATCATGATCA 60.240 42.308 12.53 2.77 33.36 2.92
806 1097 4.202295 GCCAGGAGAACAGTGATATCATGA 60.202 45.833 9.02 0.00 0.00 3.07
807 1098 4.063689 GCCAGGAGAACAGTGATATCATG 58.936 47.826 9.02 10.50 0.00 3.07
809 1100 2.435805 GGCCAGGAGAACAGTGATATCA 59.564 50.000 0.00 0.00 0.00 2.15
814 1105 0.615331 GATGGCCAGGAGAACAGTGA 59.385 55.000 13.05 0.00 0.00 3.41
834 1125 2.743752 CCGTGCGAACCAGCTCATG 61.744 63.158 0.00 0.00 38.13 3.07
835 1126 2.434884 CCGTGCGAACCAGCTCAT 60.435 61.111 0.00 0.00 38.13 2.90
836 1127 4.680237 CCCGTGCGAACCAGCTCA 62.680 66.667 0.00 0.00 38.13 4.26
857 1148 2.603953 CCTCCCGTCGTTTTTACTCTC 58.396 52.381 0.00 0.00 0.00 3.20
858 1149 1.337541 GCCTCCCGTCGTTTTTACTCT 60.338 52.381 0.00 0.00 0.00 3.24
859 1150 1.073964 GCCTCCCGTCGTTTTTACTC 58.926 55.000 0.00 0.00 0.00 2.59
992 1291 3.903090 AGAAGTGGATGCCATTTTGGAAA 59.097 39.130 0.00 0.00 40.96 3.13
1264 1563 3.235200 ACTCTGACAGTCTAACCTGCTT 58.765 45.455 1.59 0.00 35.83 3.91
1277 1576 5.821097 TCTTTATCCTCTCAGACTCTGACA 58.179 41.667 4.50 0.00 35.39 3.58
1282 1589 8.245195 AGGTTTATCTTTATCCTCTCAGACTC 57.755 38.462 0.00 0.00 0.00 3.36
1283 1590 7.289084 GGAGGTTTATCTTTATCCTCTCAGACT 59.711 40.741 8.97 0.00 42.76 3.24
1284 1591 7.289084 AGGAGGTTTATCTTTATCCTCTCAGAC 59.711 40.741 8.97 0.00 42.76 3.51
1285 1592 7.366226 AGGAGGTTTATCTTTATCCTCTCAGA 58.634 38.462 8.97 0.00 42.76 3.27
1286 1593 7.610580 AGGAGGTTTATCTTTATCCTCTCAG 57.389 40.000 8.97 0.00 42.76 3.35
1287 1594 7.604657 GAGGAGGTTTATCTTTATCCTCTCA 57.395 40.000 10.98 0.00 46.09 3.27
1291 1598 7.471679 GCGTAAGAGGAGGTTTATCTTTATCCT 60.472 40.741 0.00 0.00 39.85 3.24
1292 1599 6.645827 GCGTAAGAGGAGGTTTATCTTTATCC 59.354 42.308 0.00 0.00 43.02 2.59
1293 1600 6.645827 GGCGTAAGAGGAGGTTTATCTTTATC 59.354 42.308 0.00 0.00 43.02 1.75
1294 1601 6.099269 TGGCGTAAGAGGAGGTTTATCTTTAT 59.901 38.462 0.00 0.00 43.02 1.40
1295 1602 5.422970 TGGCGTAAGAGGAGGTTTATCTTTA 59.577 40.000 0.00 0.00 43.02 1.85
1296 1603 4.224370 TGGCGTAAGAGGAGGTTTATCTTT 59.776 41.667 0.00 0.00 43.02 2.52
1299 1606 3.814005 TGGCGTAAGAGGAGGTTTATC 57.186 47.619 0.00 0.00 43.02 1.75
1304 1611 1.209747 GGAAATGGCGTAAGAGGAGGT 59.790 52.381 0.00 0.00 43.02 3.85
1311 1618 1.436983 GAGCGGGGAAATGGCGTAAG 61.437 60.000 0.00 0.00 43.44 2.34
1312 1619 1.450669 GAGCGGGGAAATGGCGTAA 60.451 57.895 0.00 0.00 0.00 3.18
1313 1620 2.188469 GAGCGGGGAAATGGCGTA 59.812 61.111 0.00 0.00 0.00 4.42
1319 1626 1.077429 GGAAGCAGAGCGGGGAAAT 60.077 57.895 0.00 0.00 0.00 2.17
1327 1634 2.649331 TGTAGTTACGGAAGCAGAGC 57.351 50.000 0.00 0.00 0.00 4.09
1367 1683 1.040646 AGAAATATCAGGCGAGGCGA 58.959 50.000 0.00 0.00 0.00 5.54
1368 1684 1.795286 GAAGAAATATCAGGCGAGGCG 59.205 52.381 0.00 0.00 0.00 5.52
1369 1685 2.147150 GGAAGAAATATCAGGCGAGGC 58.853 52.381 0.00 0.00 0.00 4.70
1378 1694 2.650322 TGCAACGGGGGAAGAAATATC 58.350 47.619 0.00 0.00 0.00 1.63
1381 1697 1.937191 AATGCAACGGGGGAAGAAAT 58.063 45.000 0.00 0.00 0.00 2.17
1384 1700 0.111446 TGAAATGCAACGGGGGAAGA 59.889 50.000 0.00 0.00 0.00 2.87
1385 1701 0.527565 CTGAAATGCAACGGGGGAAG 59.472 55.000 0.00 0.00 0.00 3.46
1387 1703 1.304052 CCTGAAATGCAACGGGGGA 60.304 57.895 0.00 0.00 0.00 4.81
1388 1704 2.350458 CCCTGAAATGCAACGGGGG 61.350 63.158 21.06 12.37 45.95 5.40
1389 1705 3.287445 CCCTGAAATGCAACGGGG 58.713 61.111 17.34 17.34 44.78 5.73
1390 1706 0.322456 TCTCCCTGAAATGCAACGGG 60.322 55.000 0.00 0.00 36.21 5.28
1398 1714 1.064166 CCAGCCACATCTCCCTGAAAT 60.064 52.381 0.00 0.00 0.00 2.17
1401 1717 1.997311 CCCAGCCACATCTCCCTGA 60.997 63.158 0.00 0.00 0.00 3.86
1450 1766 1.745115 CTTTCTGCCGCGGATCCAA 60.745 57.895 33.48 14.61 0.00 3.53
1470 1786 1.145803 GGAGGAGCACAAACGTACAC 58.854 55.000 0.00 0.00 0.00 2.90
1478 1794 1.559682 GGTGGATTAGGAGGAGCACAA 59.440 52.381 0.00 0.00 0.00 3.33
1479 1795 1.204146 GGTGGATTAGGAGGAGCACA 58.796 55.000 0.00 0.00 0.00 4.57
1511 1831 5.389935 GCTAGTGATCTTGTTTCTTTGACCG 60.390 44.000 0.00 0.00 0.00 4.79
1512 1832 5.703130 AGCTAGTGATCTTGTTTCTTTGACC 59.297 40.000 0.00 0.00 0.00 4.02
1532 1855 4.765273 TCTGAAAACACTCACACAAGCTA 58.235 39.130 0.00 0.00 0.00 3.32
1543 1883 3.777106 TGCCAGAGATCTGAAAACACT 57.223 42.857 11.44 0.00 46.59 3.55
1564 1904 3.518303 GGTAATACAGTGACAGTCCCCTT 59.482 47.826 0.00 0.00 0.00 3.95
1766 2115 4.379813 GCTTCACACAGGAAACACCATATG 60.380 45.833 0.00 0.00 42.04 1.78
1820 2169 1.003580 AGAATTGCCTCCAAGAAGCGA 59.996 47.619 0.00 0.00 33.80 4.93
1861 2212 8.853126 AGCTGTATACGTGGTATAACTGAATTA 58.147 33.333 0.00 0.00 33.53 1.40
1893 2244 2.110901 ACTCTGCATCTTGCCTCAAG 57.889 50.000 0.37 0.37 44.23 3.02
1909 2263 6.529829 TGAATTGTGCACTAACAACAAAACTC 59.470 34.615 19.41 0.35 42.56 3.01
1911 2265 6.639671 TGAATTGTGCACTAACAACAAAAC 57.360 33.333 19.41 1.86 42.56 2.43
1927 2281 5.730568 GCTGACGTCAAAGTTCTTGAATTGT 60.731 40.000 20.49 0.00 0.00 2.71
1928 2282 4.672413 GCTGACGTCAAAGTTCTTGAATTG 59.328 41.667 20.49 3.53 0.00 2.32
1930 2284 3.251004 GGCTGACGTCAAAGTTCTTGAAT 59.749 43.478 20.49 0.00 0.00 2.57
1956 2310 0.188342 AGGTTGGTTGTCAGCCCATT 59.812 50.000 2.91 0.00 46.49 3.16
1971 2325 3.131046 GCAGCACCTTATATTTGCAGGTT 59.869 43.478 0.00 0.00 39.01 3.50
1982 2336 7.503566 AGTCAATTAACATATGCAGCACCTTAT 59.496 33.333 0.00 0.00 0.00 1.73
1986 2340 5.505173 AGTCAATTAACATATGCAGCACC 57.495 39.130 0.00 0.00 0.00 5.01
2004 2358 5.721480 TCCCATCTCAATCTTCAGTTAGTCA 59.279 40.000 0.00 0.00 0.00 3.41
2022 2376 4.458989 TCATAAACTTTGCACTGTCCCATC 59.541 41.667 0.00 0.00 0.00 3.51
2026 2380 5.181690 TGTTCATAAACTTTGCACTGTCC 57.818 39.130 0.00 0.00 36.30 4.02
2027 2381 6.529829 TGTTTGTTCATAAACTTTGCACTGTC 59.470 34.615 0.00 0.00 40.36 3.51
2037 2391 9.083080 GTTTGCTACTTTGTTTGTTCATAAACT 57.917 29.630 0.00 0.00 40.36 2.66
2044 2398 5.347364 TGCTTGTTTGCTACTTTGTTTGTTC 59.653 36.000 0.00 0.00 0.00 3.18
2069 2631 2.503895 ATTTCTGGCAGAGGGAACAG 57.496 50.000 17.91 0.00 0.00 3.16
2070 2632 2.912956 AGTATTTCTGGCAGAGGGAACA 59.087 45.455 17.91 0.00 0.00 3.18
2073 2635 2.832838 TCAGTATTTCTGGCAGAGGGA 58.167 47.619 17.91 8.43 43.76 4.20
2074 2636 3.634397 TTCAGTATTTCTGGCAGAGGG 57.366 47.619 17.91 5.23 43.76 4.30
2075 2637 3.314635 GCATTCAGTATTTCTGGCAGAGG 59.685 47.826 17.91 4.88 43.76 3.69
2076 2638 3.314635 GGCATTCAGTATTTCTGGCAGAG 59.685 47.826 17.91 5.05 43.76 3.35
2077 2639 3.282021 GGCATTCAGTATTTCTGGCAGA 58.718 45.455 14.43 14.43 43.76 4.26
2078 2640 3.018856 TGGCATTCAGTATTTCTGGCAG 58.981 45.455 8.58 8.58 43.76 4.85
2079 2641 2.754552 GTGGCATTCAGTATTTCTGGCA 59.245 45.455 0.00 0.00 43.76 4.92
2080 2642 2.754552 TGTGGCATTCAGTATTTCTGGC 59.245 45.455 0.00 0.00 43.76 4.85
2081 2643 6.263842 ACATATGTGGCATTCAGTATTTCTGG 59.736 38.462 7.78 0.00 43.76 3.86
2141 2703 3.383185 AGAAATCACACTTCCCGCAAAAA 59.617 39.130 0.00 0.00 0.00 1.94
2142 2704 2.955660 AGAAATCACACTTCCCGCAAAA 59.044 40.909 0.00 0.00 0.00 2.44
2143 2705 2.293122 CAGAAATCACACTTCCCGCAAA 59.707 45.455 0.00 0.00 0.00 3.68
2144 2706 1.879380 CAGAAATCACACTTCCCGCAA 59.121 47.619 0.00 0.00 0.00 4.85
2145 2707 1.071542 TCAGAAATCACACTTCCCGCA 59.928 47.619 0.00 0.00 0.00 5.69
2146 2708 1.808411 TCAGAAATCACACTTCCCGC 58.192 50.000 0.00 0.00 0.00 6.13
2147 2709 4.216257 ACAAATCAGAAATCACACTTCCCG 59.784 41.667 0.00 0.00 0.00 5.14
2148 2710 5.712152 ACAAATCAGAAATCACACTTCCC 57.288 39.130 0.00 0.00 0.00 3.97
2149 2711 6.738114 TCAACAAATCAGAAATCACACTTCC 58.262 36.000 0.00 0.00 0.00 3.46
2150 2712 8.697067 CATTCAACAAATCAGAAATCACACTTC 58.303 33.333 0.00 0.00 0.00 3.01
2151 2713 8.415553 TCATTCAACAAATCAGAAATCACACTT 58.584 29.630 0.00 0.00 0.00 3.16
2152 2714 7.944061 TCATTCAACAAATCAGAAATCACACT 58.056 30.769 0.00 0.00 0.00 3.55
2153 2715 8.482429 GTTCATTCAACAAATCAGAAATCACAC 58.518 33.333 0.00 0.00 34.76 3.82
2154 2716 7.652909 GGTTCATTCAACAAATCAGAAATCACA 59.347 33.333 0.00 0.00 36.61 3.58
2155 2717 7.652909 TGGTTCATTCAACAAATCAGAAATCAC 59.347 33.333 0.00 0.00 36.61 3.06
2156 2718 7.724287 TGGTTCATTCAACAAATCAGAAATCA 58.276 30.769 0.00 0.00 36.61 2.57
2157 2719 8.592105 TTGGTTCATTCAACAAATCAGAAATC 57.408 30.769 0.00 0.00 36.61 2.17
2158 2720 8.961294 TTTGGTTCATTCAACAAATCAGAAAT 57.039 26.923 0.00 0.00 36.61 2.17
2159 2721 8.961294 ATTTGGTTCATTCAACAAATCAGAAA 57.039 26.923 0.00 0.00 36.61 2.52
2160 2722 8.961294 AATTTGGTTCATTCAACAAATCAGAA 57.039 26.923 0.00 0.00 36.61 3.02
2161 2723 8.828644 CAAATTTGGTTCATTCAACAAATCAGA 58.171 29.630 10.49 0.00 36.61 3.27
2162 2724 8.071368 CCAAATTTGGTTCATTCAACAAATCAG 58.929 33.333 26.34 0.00 43.43 2.90
2163 2725 7.928103 CCAAATTTGGTTCATTCAACAAATCA 58.072 30.769 26.34 0.00 43.43 2.57
2239 2802 1.008538 CCGCTTGGAGTTGTTGCAC 60.009 57.895 0.00 0.00 33.02 4.57
2249 2812 3.256960 AGCCCCTTTCCGCTTGGA 61.257 61.111 0.00 0.00 41.08 3.53
2256 2819 4.684134 TGCCTGCAGCCCCTTTCC 62.684 66.667 8.66 0.00 42.71 3.13
2257 2820 3.376918 GTGCCTGCAGCCCCTTTC 61.377 66.667 8.66 0.00 42.71 2.62
2276 2839 0.950555 TCGAACACTCTGCACATGGC 60.951 55.000 0.00 0.00 45.13 4.40
2283 2846 0.109272 TCGTCCATCGAACACTCTGC 60.109 55.000 0.00 0.00 45.98 4.26
2293 2856 4.119862 AGTTACCATTTGATCGTCCATCG 58.880 43.478 0.00 0.00 41.41 3.84
2294 2857 4.511826 GGAGTTACCATTTGATCGTCCATC 59.488 45.833 0.00 0.00 38.79 3.51
2295 2858 4.164221 AGGAGTTACCATTTGATCGTCCAT 59.836 41.667 0.00 0.00 42.04 3.41
2296 2859 3.517901 AGGAGTTACCATTTGATCGTCCA 59.482 43.478 0.00 0.00 42.04 4.02
2300 2865 4.935205 TCACAAGGAGTTACCATTTGATCG 59.065 41.667 0.00 0.00 42.04 3.69
2317 2882 4.222114 GACCTGAAAAGCGAATTCACAAG 58.778 43.478 6.22 0.00 33.47 3.16
2320 2885 2.412847 CCGACCTGAAAAGCGAATTCAC 60.413 50.000 6.22 0.00 33.47 3.18
2327 2892 2.409975 TCTAAACCGACCTGAAAAGCG 58.590 47.619 0.00 0.00 0.00 4.68
2328 2893 3.062234 CGATCTAAACCGACCTGAAAAGC 59.938 47.826 0.00 0.00 0.00 3.51
2436 3002 6.040729 ACAAGGACACAGATCAGATCAGATAG 59.959 42.308 13.14 0.11 0.00 2.08
2469 3035 8.991243 AAACCACAAAAAGTTAACTTTCTACC 57.009 30.769 28.90 0.00 44.69 3.18
2569 3136 8.718102 TTTGTACCTGAGATTCATAGTAAAGC 57.282 34.615 0.00 0.00 0.00 3.51
2597 3164 4.022935 TGCCAACACAGAGATTGTTCAATC 60.023 41.667 15.21 15.21 38.16 2.67
2646 3213 7.065803 GCTCAGCTACAACTATTACAAAATCCA 59.934 37.037 0.00 0.00 0.00 3.41
2801 3369 1.662629 GCGGTGATGTGTTGATCAGAG 59.337 52.381 0.00 0.00 32.92 3.35
3055 3708 4.035558 GCAACAATATGAGATTTCGCCAGA 59.964 41.667 0.00 0.00 0.00 3.86
3061 3714 5.175126 GCATGCAGCAACAATATGAGATTTC 59.825 40.000 14.21 0.00 44.79 2.17
3140 3793 3.862267 GCTGTCACTTAGTGTATCTGCAG 59.138 47.826 12.41 7.63 34.79 4.41
3142 3795 3.862267 CAGCTGTCACTTAGTGTATCTGC 59.138 47.826 12.41 16.55 34.79 4.26
3359 4012 8.029522 TCTGTTTTGATATCTATAGCCTTAGCG 58.970 37.037 3.98 0.00 46.67 4.26
3403 4060 6.966534 ATTGACCAATAATTTAGGCTCCAG 57.033 37.500 0.00 0.00 0.00 3.86
3498 4155 5.414765 AGTTCGGTTAACCATTGATTTCCTC 59.585 40.000 24.14 1.72 39.03 3.71
3537 4194 5.450412 GGTGCACAACTCTTGAGAAAAATCA 60.450 40.000 20.43 0.00 0.00 2.57
3538 4195 4.978580 GGTGCACAACTCTTGAGAAAAATC 59.021 41.667 20.43 0.00 0.00 2.17
3539 4196 4.402155 TGGTGCACAACTCTTGAGAAAAAT 59.598 37.500 20.43 0.00 0.00 1.82
3540 4197 3.761218 TGGTGCACAACTCTTGAGAAAAA 59.239 39.130 20.43 0.00 0.00 1.94
3542 4199 2.997980 TGGTGCACAACTCTTGAGAAA 58.002 42.857 20.43 0.00 0.00 2.52
3543 4200 2.708216 TGGTGCACAACTCTTGAGAA 57.292 45.000 20.43 0.00 0.00 2.87
3544 4201 2.708216 TTGGTGCACAACTCTTGAGA 57.292 45.000 20.43 0.00 33.18 3.27
3579 4245 2.073056 TGCAAAGTACTACACGGCATG 58.927 47.619 0.00 0.00 31.57 4.06
3581 4247 2.465860 ATGCAAAGTACTACACGGCA 57.534 45.000 0.00 2.56 37.75 5.69
3585 4251 3.059188 ACACGCAATGCAAAGTACTACAC 60.059 43.478 5.91 0.00 0.00 2.90
3592 4258 4.324424 GCACACGCAATGCAAAGT 57.676 50.000 5.91 0.00 42.88 2.66
3642 4311 9.059260 ACTGTTGTTAGGTACATTACGAAAAAT 57.941 29.630 0.00 0.00 36.44 1.82
3646 4315 5.406175 GCACTGTTGTTAGGTACATTACGAA 59.594 40.000 0.00 0.00 36.44 3.85
3706 4378 4.372656 AGAAGACTTCGAAACAACCTGAG 58.627 43.478 9.53 0.00 34.02 3.35
3717 4389 3.490933 CCGCCATGAATAGAAGACTTCGA 60.491 47.826 9.53 4.98 34.02 3.71
3719 4391 3.798202 ACCGCCATGAATAGAAGACTTC 58.202 45.455 7.14 7.14 0.00 3.01
3721 4393 2.223829 CGACCGCCATGAATAGAAGACT 60.224 50.000 0.00 0.00 0.00 3.24
3722 4394 2.128035 CGACCGCCATGAATAGAAGAC 58.872 52.381 0.00 0.00 0.00 3.01
3743 4415 3.181439 ACTTTCCTTGGAAGAGAACCAGG 60.181 47.826 14.11 0.00 38.70 4.45
3755 4427 3.244112 ACTTCGACACCTACTTTCCTTGG 60.244 47.826 0.00 0.00 0.00 3.61
3756 4428 3.741344 CACTTCGACACCTACTTTCCTTG 59.259 47.826 0.00 0.00 0.00 3.61
3785 4457 1.192428 GGACGGAGGGAGTACATTGT 58.808 55.000 0.00 0.00 0.00 2.71
3791 4463 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3794 4466 4.754311 TGTTATATTATGGGACGGAGGGA 58.246 43.478 0.00 0.00 0.00 4.20
3795 4467 4.530946 ACTGTTATATTATGGGACGGAGGG 59.469 45.833 0.00 0.00 0.00 4.30
3796 4468 5.011738 ACACTGTTATATTATGGGACGGAGG 59.988 44.000 0.00 0.00 0.00 4.30
3799 4471 5.694910 GTCACACTGTTATATTATGGGACGG 59.305 44.000 0.00 0.00 34.27 4.79
3800 4472 6.277605 TGTCACACTGTTATATTATGGGACG 58.722 40.000 0.00 0.00 44.91 4.79
3801 4473 7.224753 CACTGTCACACTGTTATATTATGGGAC 59.775 40.741 0.00 0.00 42.78 4.46
3802 4474 7.093068 ACACTGTCACACTGTTATATTATGGGA 60.093 37.037 0.00 0.00 0.00 4.37
3803 4475 7.011389 CACACTGTCACACTGTTATATTATGGG 59.989 40.741 0.00 0.00 0.00 4.00
3804 4476 7.763985 TCACACTGTCACACTGTTATATTATGG 59.236 37.037 0.00 0.00 0.00 2.74
3805 4477 8.702163 TCACACTGTCACACTGTTATATTATG 57.298 34.615 0.00 0.00 0.00 1.90
3806 4478 9.719355 TTTCACACTGTCACACTGTTATATTAT 57.281 29.630 0.00 0.00 0.00 1.28
3807 4479 9.549078 TTTTCACACTGTCACACTGTTATATTA 57.451 29.630 0.00 0.00 0.00 0.98
3808 4480 8.342634 GTTTTCACACTGTCACACTGTTATATT 58.657 33.333 0.00 0.00 0.00 1.28
3809 4481 7.715249 AGTTTTCACACTGTCACACTGTTATAT 59.285 33.333 0.00 0.00 0.00 0.86
3810 4482 7.045416 AGTTTTCACACTGTCACACTGTTATA 58.955 34.615 0.00 0.00 0.00 0.98
3811 4483 5.880332 AGTTTTCACACTGTCACACTGTTAT 59.120 36.000 0.00 0.00 0.00 1.89
3812 4484 5.242434 AGTTTTCACACTGTCACACTGTTA 58.758 37.500 0.00 0.00 0.00 2.41
3813 4485 4.072131 AGTTTTCACACTGTCACACTGTT 58.928 39.130 0.00 0.00 0.00 3.16
3814 4486 3.674997 AGTTTTCACACTGTCACACTGT 58.325 40.909 0.00 0.00 0.00 3.55
3815 4487 4.629634 TGTAGTTTTCACACTGTCACACTG 59.370 41.667 0.00 0.00 0.00 3.66
3816 4488 4.630069 GTGTAGTTTTCACACTGTCACACT 59.370 41.667 0.00 0.00 42.43 3.55
3817 4489 4.491924 CGTGTAGTTTTCACACTGTCACAC 60.492 45.833 4.32 0.00 43.32 3.82
3818 4490 3.615056 CGTGTAGTTTTCACACTGTCACA 59.385 43.478 4.32 0.00 43.32 3.58
3819 4491 3.615496 ACGTGTAGTTTTCACACTGTCAC 59.385 43.478 4.32 0.00 43.32 3.67
3820 4492 3.852286 ACGTGTAGTTTTCACACTGTCA 58.148 40.909 4.32 0.00 43.32 3.58
3821 4493 5.954434 TTACGTGTAGTTTTCACACTGTC 57.046 39.130 0.00 0.00 43.32 3.51
3822 4494 6.913873 AATTACGTGTAGTTTTCACACTGT 57.086 33.333 0.00 6.29 43.32 3.55
3823 4495 7.627340 AGAAATTACGTGTAGTTTTCACACTG 58.373 34.615 0.00 1.31 43.32 3.66
3824 4496 7.781548 AGAAATTACGTGTAGTTTTCACACT 57.218 32.000 0.00 2.45 43.32 3.55
3825 4497 9.525007 CATAGAAATTACGTGTAGTTTTCACAC 57.475 33.333 0.00 0.00 42.31 3.82
3826 4498 9.478768 TCATAGAAATTACGTGTAGTTTTCACA 57.521 29.630 0.00 7.01 35.79 3.58
3860 4582 0.700564 ATGGCAACCTGAGGTGATGT 59.299 50.000 4.15 0.00 35.34 3.06
3929 4651 7.554118 CACTTCACTTGATACCAGGATTGTTAT 59.446 37.037 0.00 0.00 0.00 1.89
3950 4672 2.576615 ACAACAGCTCCTTTCCACTTC 58.423 47.619 0.00 0.00 0.00 3.01
3951 4673 2.736670 ACAACAGCTCCTTTCCACTT 57.263 45.000 0.00 0.00 0.00 3.16
3952 4674 2.736670 AACAACAGCTCCTTTCCACT 57.263 45.000 0.00 0.00 0.00 4.00
3953 4675 3.130340 TCAAAACAACAGCTCCTTTCCAC 59.870 43.478 0.00 0.00 0.00 4.02
3954 4676 3.360867 TCAAAACAACAGCTCCTTTCCA 58.639 40.909 0.00 0.00 0.00 3.53
3955 4677 3.381590 ACTCAAAACAACAGCTCCTTTCC 59.618 43.478 0.00 0.00 0.00 3.13
3956 4678 4.354587 CACTCAAAACAACAGCTCCTTTC 58.645 43.478 0.00 0.00 0.00 2.62
3957 4679 3.131046 CCACTCAAAACAACAGCTCCTTT 59.869 43.478 0.00 0.00 0.00 3.11
3958 4680 2.689983 CCACTCAAAACAACAGCTCCTT 59.310 45.455 0.00 0.00 0.00 3.36
3959 4681 2.301346 CCACTCAAAACAACAGCTCCT 58.699 47.619 0.00 0.00 0.00 3.69
3960 4682 2.024414 ACCACTCAAAACAACAGCTCC 58.976 47.619 0.00 0.00 0.00 4.70
3961 4683 2.223572 CCACCACTCAAAACAACAGCTC 60.224 50.000 0.00 0.00 0.00 4.09
3962 4684 1.750778 CCACCACTCAAAACAACAGCT 59.249 47.619 0.00 0.00 0.00 4.24
3963 4685 1.802508 GCCACCACTCAAAACAACAGC 60.803 52.381 0.00 0.00 0.00 4.40
3964 4686 1.202405 GGCCACCACTCAAAACAACAG 60.202 52.381 0.00 0.00 0.00 3.16
3965 4687 0.820871 GGCCACCACTCAAAACAACA 59.179 50.000 0.00 0.00 0.00 3.33
3966 4688 1.067060 GAGGCCACCACTCAAAACAAC 59.933 52.381 5.01 0.00 35.09 3.32
3967 4689 1.064017 AGAGGCCACCACTCAAAACAA 60.064 47.619 5.01 0.00 37.43 2.83
3970 4692 1.214175 TCAAGAGGCCACCACTCAAAA 59.786 47.619 5.01 0.00 37.43 2.44
4004 4726 1.302832 GTTCCCTGTGCACCTCCAG 60.303 63.158 15.69 4.59 0.00 3.86
4010 4732 1.967319 TCTGAAAGTTCCCTGTGCAC 58.033 50.000 10.75 10.75 33.76 4.57
4035 4757 6.213600 ACCAACTCTATAGCATTTCCCGATAT 59.786 38.462 0.00 0.00 0.00 1.63
4039 4761 4.073293 ACCAACTCTATAGCATTTCCCG 57.927 45.455 0.00 0.00 0.00 5.14
4089 4811 2.543848 CGCGTTGACATAATGCATACCT 59.456 45.455 0.00 0.00 32.66 3.08
4091 4813 2.349438 CCCGCGTTGACATAATGCATAC 60.349 50.000 4.92 0.00 32.66 2.39
4104 4826 3.481661 GGTATGTCACCCGCGTTG 58.518 61.111 4.92 1.27 42.07 4.10
4145 4867 9.965902 ACTTCCTCTGTTTCACAATATAAGATT 57.034 29.630 0.00 0.00 0.00 2.40
4148 4870 9.653287 TGTACTTCCTCTGTTTCACAATATAAG 57.347 33.333 0.00 0.00 0.00 1.73
4151 4873 7.066284 GCATGTACTTCCTCTGTTTCACAATAT 59.934 37.037 0.00 0.00 0.00 1.28
4159 4881 5.882557 CCATTAGCATGTACTTCCTCTGTTT 59.117 40.000 0.00 0.00 0.00 2.83
4160 4882 5.431765 CCATTAGCATGTACTTCCTCTGTT 58.568 41.667 0.00 0.00 0.00 3.16
4163 4885 4.078639 GCCATTAGCATGTACTTCCTCT 57.921 45.455 0.00 0.00 42.97 3.69
4182 4904 0.234884 GTACACGTGAAGCAACTGCC 59.765 55.000 25.01 0.00 43.38 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.