Multiple sequence alignment - TraesCS1B01G366900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G366900 chr1B 100.000 2288 0 0 1 2288 597668957 597666670 0.000000e+00 4226.0
1 TraesCS1B01G366900 chr1B 94.318 88 4 1 660 746 676774969 676774882 1.430000e-27 134.0
2 TraesCS1B01G366900 chr1B 97.143 35 0 1 1783 1816 481721058 481721092 8.830000e-05 58.4
3 TraesCS1B01G366900 chr1D 88.353 1099 72 20 1006 2084 440087328 440086266 0.000000e+00 1269.0
4 TraesCS1B01G366900 chr1D 88.156 743 61 11 1 742 440088300 440087584 0.000000e+00 859.0
5 TraesCS1B01G366900 chr1D 96.429 84 2 1 660 742 486065947 486065864 1.100000e-28 137.0
6 TraesCS1B01G366900 chr1D 85.437 103 12 2 175 276 73988643 73988543 1.120000e-18 104.0
7 TraesCS1B01G366900 chr1A 83.543 796 64 22 1006 1786 537817962 537818705 0.000000e+00 682.0
8 TraesCS1B01G366900 chr1A 89.030 474 52 0 1 474 537817047 537817520 2.530000e-164 588.0
9 TraesCS1B01G366900 chr1A 86.435 317 22 18 460 767 537817536 537817840 6.090000e-86 327.0
10 TraesCS1B01G366900 chr1A 95.294 85 3 1 657 740 583659494 583659410 1.430000e-27 134.0
11 TraesCS1B01G366900 chr1A 96.250 80 2 1 666 745 583586982 583586904 1.840000e-26 130.0
12 TraesCS1B01G366900 chr5D 81.211 479 65 12 1 458 561568840 561569314 1.670000e-96 363.0
13 TraesCS1B01G366900 chr5D 87.097 155 18 2 236 388 424110100 424109946 8.400000e-40 174.0
14 TraesCS1B01G366900 chr5D 80.087 231 38 6 233 458 561565556 561565783 5.060000e-37 165.0
15 TraesCS1B01G366900 chr3D 80.793 479 68 11 1 458 517479042 517479517 1.010000e-93 353.0
16 TraesCS1B01G366900 chr3D 81.897 232 33 8 233 458 517444384 517444612 1.080000e-43 187.0
17 TraesCS1B01G366900 chrUn 80.417 480 70 8 1 458 299822940 299822463 6.050000e-91 344.0
18 TraesCS1B01G366900 chrUn 80.417 480 70 8 1 458 309591566 309591089 6.050000e-91 344.0
19 TraesCS1B01G366900 chrUn 85.075 67 6 3 1783 1848 197235652 197235715 5.280000e-07 65.8
20 TraesCS1B01G366900 chr4A 78.661 478 76 17 1 458 565743447 565742976 6.180000e-76 294.0
21 TraesCS1B01G366900 chr7D 84.663 163 24 1 9 170 416270682 416270520 6.540000e-36 161.0
22 TraesCS1B01G366900 chr7D 85.714 63 6 2 1786 1848 254152519 254152460 1.900000e-06 63.9
23 TraesCS1B01G366900 chr2D 95.455 88 2 2 660 746 510217085 510217171 3.060000e-29 139.0
24 TraesCS1B01G366900 chr3B 93.182 88 5 1 660 746 519858200 519858113 6.630000e-26 128.0
25 TraesCS1B01G366900 chr3A 91.398 93 7 1 653 745 514622423 514622332 2.390000e-25 126.0
26 TraesCS1B01G366900 chr7B 85.075 67 6 3 1783 1848 727596951 727597014 5.280000e-07 65.8
27 TraesCS1B01G366900 chr4B 85.075 67 6 3 1783 1848 278519557 278519494 5.280000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G366900 chr1B 597666670 597668957 2287 True 4226.000000 4226 100.0000 1 2288 1 chr1B.!!$R1 2287
1 TraesCS1B01G366900 chr1D 440086266 440088300 2034 True 1064.000000 1269 88.2545 1 2084 2 chr1D.!!$R3 2083
2 TraesCS1B01G366900 chr1A 537817047 537818705 1658 False 532.333333 682 86.3360 1 1786 3 chr1A.!!$F1 1785
3 TraesCS1B01G366900 chr5D 561565556 561569314 3758 False 264.000000 363 80.6490 1 458 2 chr5D.!!$F1 457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 4380 0.033991 TCAACCGAGAGAGAGGAGGG 60.034 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 5325 0.038801 CTGTCTGCAGCAACTCTCGA 60.039 55.0 9.47 0.0 35.77 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 3331 8.803235 GTTTCTTATGGAAGGTTTTAATGAGGT 58.197 33.333 0.00 0.00 35.16 3.85
98 3383 7.525360 GCCATTTTCTCCTTATTTTTCCAGTGA 60.525 37.037 0.00 0.00 0.00 3.41
99 3384 8.367156 CCATTTTCTCCTTATTTTTCCAGTGAA 58.633 33.333 0.00 0.00 0.00 3.18
123 3408 5.930837 TTTTTGAAGGTGTTCTTGATGGT 57.069 34.783 0.00 0.00 35.50 3.55
170 3455 4.316025 TTCCTACAGGATTTTTGGAGGG 57.684 45.455 3.79 0.00 45.25 4.30
208 3508 8.500837 TGTTGATGACGATGTTTACAAAAATC 57.499 30.769 0.00 0.00 30.78 2.17
215 3515 9.521503 TGACGATGTTTACAAAAATCATTGAAA 57.478 25.926 5.86 0.00 33.16 2.69
234 3534 4.949856 TGAAACAGGGATTAGGAAGAATGC 59.050 41.667 0.00 0.00 0.00 3.56
423 3723 5.268544 CGGACATCATCACAATCAATCAAC 58.731 41.667 0.00 0.00 0.00 3.18
494 3826 7.009174 GCTATAACTTATTGCGCAAAACAACAT 59.991 33.333 28.81 17.82 0.00 2.71
495 3827 5.574815 AACTTATTGCGCAAAACAACATC 57.425 34.783 28.81 0.00 0.00 3.06
496 3828 4.615949 ACTTATTGCGCAAAACAACATCA 58.384 34.783 28.81 0.00 0.00 3.07
514 3846 4.328983 ACATCAGCGTAACTTTGAATACGG 59.671 41.667 7.35 0.00 43.73 4.02
519 3851 5.229469 CAGCGTAACTTTGAATACGGACTAG 59.771 44.000 7.35 0.00 43.73 2.57
557 3897 8.441312 AACAAAAGAAGAATACGGACAACTTA 57.559 30.769 0.00 0.00 0.00 2.24
571 3911 4.750598 GGACAACTTAGACTTGACAGAACC 59.249 45.833 0.00 0.00 0.00 3.62
610 3950 1.432270 GCCACTGATCTTAGGCGTGC 61.432 60.000 7.03 0.00 37.41 5.34
625 3965 1.225376 CGTGCCAAAAGACCACGCTA 61.225 55.000 0.00 0.00 44.45 4.26
636 3976 7.305474 CAAAAGACCACGCTAGTTTGAAATAT 58.695 34.615 0.00 0.00 0.00 1.28
639 3979 7.772332 AGACCACGCTAGTTTGAAATATAAG 57.228 36.000 0.00 0.00 0.00 1.73
641 3981 7.707035 AGACCACGCTAGTTTGAAATATAAGAG 59.293 37.037 0.00 0.00 0.00 2.85
645 3985 7.010552 CACGCTAGTTTGAAATATAAGAGCTGT 59.989 37.037 0.00 0.00 0.00 4.40
646 3986 7.549488 ACGCTAGTTTGAAATATAAGAGCTGTT 59.451 33.333 0.25 0.25 0.00 3.16
647 3987 7.848051 CGCTAGTTTGAAATATAAGAGCTGTTG 59.152 37.037 6.33 0.00 0.00 3.33
655 3995 8.015087 TGAAATATAAGAGCTGTTGTTCGTTTG 58.985 33.333 6.33 0.00 0.00 2.93
658 3998 6.854496 ATAAGAGCTGTTGTTCGTTTGTAA 57.146 33.333 6.33 0.00 0.00 2.41
660 4000 5.554822 AGAGCTGTTGTTCGTTTGTAAAA 57.445 34.783 0.00 0.00 0.00 1.52
663 4003 5.462405 AGCTGTTGTTCGTTTGTAAAACAA 58.538 33.333 3.97 0.00 39.77 2.83
768 4111 8.525290 TTTATCAATCTCTTCCATCTTTTCCC 57.475 34.615 0.00 0.00 0.00 3.97
769 4112 4.517285 TCAATCTCTTCCATCTTTTCCCG 58.483 43.478 0.00 0.00 0.00 5.14
770 4113 4.019321 TCAATCTCTTCCATCTTTTCCCGT 60.019 41.667 0.00 0.00 0.00 5.28
771 4114 5.188948 TCAATCTCTTCCATCTTTTCCCGTA 59.811 40.000 0.00 0.00 0.00 4.02
772 4115 4.467198 TCTCTTCCATCTTTTCCCGTAC 57.533 45.455 0.00 0.00 0.00 3.67
774 4117 4.081642 TCTCTTCCATCTTTTCCCGTACTG 60.082 45.833 0.00 0.00 0.00 2.74
775 4118 3.581332 TCTTCCATCTTTTCCCGTACTGT 59.419 43.478 0.00 0.00 0.00 3.55
776 4119 4.773674 TCTTCCATCTTTTCCCGTACTGTA 59.226 41.667 0.00 0.00 0.00 2.74
777 4120 5.246656 TCTTCCATCTTTTCCCGTACTGTAA 59.753 40.000 0.00 0.00 0.00 2.41
778 4121 4.824289 TCCATCTTTTCCCGTACTGTAAC 58.176 43.478 0.00 0.00 0.00 2.50
779 4122 4.529377 TCCATCTTTTCCCGTACTGTAACT 59.471 41.667 0.00 0.00 0.00 2.24
780 4123 4.630069 CCATCTTTTCCCGTACTGTAACTG 59.370 45.833 0.00 0.00 0.00 3.16
781 4124 3.656559 TCTTTTCCCGTACTGTAACTGC 58.343 45.455 0.00 0.00 0.00 4.40
782 4125 3.069872 TCTTTTCCCGTACTGTAACTGCA 59.930 43.478 0.00 0.00 0.00 4.41
783 4126 2.443887 TTCCCGTACTGTAACTGCAC 57.556 50.000 0.00 0.00 0.00 4.57
784 4127 1.330234 TCCCGTACTGTAACTGCACA 58.670 50.000 0.00 0.00 0.00 4.57
785 4128 1.687660 TCCCGTACTGTAACTGCACAA 59.312 47.619 0.00 0.00 0.00 3.33
786 4129 1.796459 CCCGTACTGTAACTGCACAAC 59.204 52.381 0.00 0.00 0.00 3.32
788 4131 3.064207 CCGTACTGTAACTGCACAACAT 58.936 45.455 0.00 0.00 0.00 2.71
794 4137 2.799978 TGTAACTGCACAACATCTCACG 59.200 45.455 0.00 0.00 0.00 4.35
796 4139 1.502231 ACTGCACAACATCTCACGAC 58.498 50.000 0.00 0.00 0.00 4.34
804 4147 5.200454 CACAACATCTCACGACTCTTTTTG 58.800 41.667 0.00 0.00 0.00 2.44
806 4149 4.073293 ACATCTCACGACTCTTTTTGGT 57.927 40.909 0.00 0.00 0.00 3.67
810 4153 0.865769 CACGACTCTTTTTGGTCCCG 59.134 55.000 0.00 0.00 0.00 5.14
812 4155 0.602905 CGACTCTTTTTGGTCCCGCT 60.603 55.000 0.00 0.00 0.00 5.52
813 4156 0.875059 GACTCTTTTTGGTCCCGCTG 59.125 55.000 0.00 0.00 0.00 5.18
815 4158 2.187599 CTCTTTTTGGTCCCGCTGCG 62.188 60.000 16.34 16.34 0.00 5.18
816 4159 2.203224 TTTTTGGTCCCGCTGCGA 60.203 55.556 25.45 0.32 0.00 5.10
817 4160 1.586154 CTTTTTGGTCCCGCTGCGAT 61.586 55.000 25.45 0.00 0.00 4.58
818 4161 1.582610 TTTTTGGTCCCGCTGCGATC 61.583 55.000 25.45 12.55 0.00 3.69
819 4162 2.463589 TTTTGGTCCCGCTGCGATCT 62.464 55.000 25.45 0.00 0.00 2.75
820 4163 2.852495 TTTGGTCCCGCTGCGATCTC 62.852 60.000 25.45 10.69 0.00 2.75
822 4165 2.583593 GTCCCGCTGCGATCTCAC 60.584 66.667 25.45 8.21 0.00 3.51
823 4166 4.193334 TCCCGCTGCGATCTCACG 62.193 66.667 25.45 4.28 0.00 4.35
825 4168 2.026734 CCGCTGCGATCTCACGAT 59.973 61.111 25.45 0.00 35.09 3.73
826 4169 1.589993 CCGCTGCGATCTCACGATT 60.590 57.895 25.45 0.00 35.09 3.34
827 4170 1.543941 CCGCTGCGATCTCACGATTC 61.544 60.000 25.45 0.00 35.09 2.52
829 4172 1.565305 GCTGCGATCTCACGATTCTT 58.435 50.000 0.00 0.00 35.09 2.52
833 4198 4.602006 CTGCGATCTCACGATTCTTTCTA 58.398 43.478 0.00 0.00 35.09 2.10
839 4204 4.166523 TCTCACGATTCTTTCTAGTTGCG 58.833 43.478 0.00 0.00 0.00 4.85
842 4207 2.915463 ACGATTCTTTCTAGTTGCGACG 59.085 45.455 0.00 0.00 0.00 5.12
843 4208 3.168963 CGATTCTTTCTAGTTGCGACGA 58.831 45.455 0.00 0.00 0.00 4.20
851 4216 4.903638 TCTAGTTGCGACGAAATTTCTG 57.096 40.909 15.92 11.53 0.00 3.02
854 4219 3.617669 AGTTGCGACGAAATTTCTGTTG 58.382 40.909 15.92 17.38 0.00 3.33
855 4220 3.064820 AGTTGCGACGAAATTTCTGTTGT 59.935 39.130 15.92 6.41 0.00 3.32
856 4221 3.684103 TGCGACGAAATTTCTGTTGTT 57.316 38.095 15.92 0.00 0.00 2.83
862 4227 5.317733 ACGAAATTTCTGTTGTTCCAACA 57.682 34.783 15.92 9.25 37.08 3.33
863 4228 5.715070 ACGAAATTTCTGTTGTTCCAACAA 58.285 33.333 15.92 0.55 45.88 2.83
888 4253 1.118356 TTTCGGCATGCCAACCCTTT 61.118 50.000 34.93 0.00 35.37 3.11
889 4254 0.251386 TTCGGCATGCCAACCCTTTA 60.251 50.000 34.93 8.57 35.37 1.85
890 4255 0.251386 TCGGCATGCCAACCCTTTAA 60.251 50.000 34.93 6.60 35.37 1.52
891 4256 0.108851 CGGCATGCCAACCCTTTAAC 60.109 55.000 34.93 4.81 35.37 2.01
892 4257 1.266178 GGCATGCCAACCCTTTAACT 58.734 50.000 32.08 0.00 35.81 2.24
913 4278 2.368875 TGGGAAGAGAGACTGTTGGTTC 59.631 50.000 0.00 0.00 0.00 3.62
914 4279 2.368875 GGGAAGAGAGACTGTTGGTTCA 59.631 50.000 0.00 0.00 0.00 3.18
915 4280 3.556004 GGGAAGAGAGACTGTTGGTTCAG 60.556 52.174 0.00 0.00 40.80 3.02
935 4300 0.457509 CAGCTGCAGAGTCACGGTAG 60.458 60.000 20.43 0.00 0.00 3.18
936 4301 1.807573 GCTGCAGAGTCACGGTAGC 60.808 63.158 20.43 0.00 43.11 3.58
937 4302 1.586541 CTGCAGAGTCACGGTAGCA 59.413 57.895 8.42 0.00 0.00 3.49
963 4353 2.224305 ACTAGTGAACCTTCAGGCACAC 60.224 50.000 12.41 12.41 41.46 3.82
978 4368 4.986587 CACCGTCGCGTCAACCGA 62.987 66.667 5.77 0.00 39.56 4.69
979 4369 4.695231 ACCGTCGCGTCAACCGAG 62.695 66.667 5.77 0.00 39.56 4.63
980 4370 4.394078 CCGTCGCGTCAACCGAGA 62.394 66.667 5.77 0.00 43.31 4.04
981 4371 2.870161 CGTCGCGTCAACCGAGAG 60.870 66.667 5.77 0.00 46.15 3.20
982 4372 2.559840 GTCGCGTCAACCGAGAGA 59.440 61.111 5.77 0.00 46.15 3.10
983 4373 1.512310 GTCGCGTCAACCGAGAGAG 60.512 63.158 5.77 0.00 46.15 3.20
984 4374 1.670083 TCGCGTCAACCGAGAGAGA 60.670 57.895 5.77 0.00 40.58 3.10
986 4376 1.137825 GCGTCAACCGAGAGAGAGG 59.862 63.158 0.00 0.00 39.56 3.69
989 4379 1.099689 GTCAACCGAGAGAGAGGAGG 58.900 60.000 0.00 0.00 0.00 4.30
990 4380 0.033991 TCAACCGAGAGAGAGGAGGG 60.034 60.000 0.00 0.00 0.00 4.30
991 4381 1.040339 CAACCGAGAGAGAGGAGGGG 61.040 65.000 0.00 0.00 0.00 4.79
992 4382 1.511316 AACCGAGAGAGAGGAGGGGT 61.511 60.000 0.00 0.00 0.00 4.95
993 4383 1.454847 CCGAGAGAGAGGAGGGGTG 60.455 68.421 0.00 0.00 0.00 4.61
994 4384 1.454847 CGAGAGAGAGGAGGGGTGG 60.455 68.421 0.00 0.00 0.00 4.61
995 4385 1.700985 GAGAGAGAGGAGGGGTGGT 59.299 63.158 0.00 0.00 0.00 4.16
996 4386 0.041982 GAGAGAGAGGAGGGGTGGTT 59.958 60.000 0.00 0.00 0.00 3.67
997 4387 1.288335 GAGAGAGAGGAGGGGTGGTTA 59.712 57.143 0.00 0.00 0.00 2.85
998 4388 1.722851 AGAGAGAGGAGGGGTGGTTAA 59.277 52.381 0.00 0.00 0.00 2.01
999 4389 2.113777 AGAGAGAGGAGGGGTGGTTAAA 59.886 50.000 0.00 0.00 0.00 1.52
1000 4390 2.910977 GAGAGAGGAGGGGTGGTTAAAA 59.089 50.000 0.00 0.00 0.00 1.52
1001 4391 3.523972 GAGAGAGGAGGGGTGGTTAAAAT 59.476 47.826 0.00 0.00 0.00 1.82
1002 4392 3.267031 AGAGAGGAGGGGTGGTTAAAATG 59.733 47.826 0.00 0.00 0.00 2.32
1003 4393 2.311841 AGAGGAGGGGTGGTTAAAATGG 59.688 50.000 0.00 0.00 0.00 3.16
1004 4394 1.191535 GGAGGGGTGGTTAAAATGGC 58.808 55.000 0.00 0.00 0.00 4.40
1394 4799 4.097892 AGAACTGTTTTTCGCACTGGAATT 59.902 37.500 0.00 0.00 0.00 2.17
1395 4800 3.964909 ACTGTTTTTCGCACTGGAATTC 58.035 40.909 0.00 0.00 0.00 2.17
1409 4817 6.284459 CACTGGAATTCTCCCTACTGTTATC 58.716 44.000 5.23 0.00 41.64 1.75
1430 4838 4.839121 TCGCTGGTATGGTTTCAAAGTAT 58.161 39.130 0.00 0.00 0.00 2.12
1446 4854 7.156876 TCAAAGTATTTTAATCTGTGCCTGG 57.843 36.000 0.00 0.00 35.03 4.45
1459 4867 3.812262 TGTGCCTGGTTCTATCATCATG 58.188 45.455 0.00 0.00 0.00 3.07
1461 4869 2.440627 TGCCTGGTTCTATCATCATGCT 59.559 45.455 0.00 0.00 0.00 3.79
1462 4870 3.072944 GCCTGGTTCTATCATCATGCTC 58.927 50.000 0.00 0.00 0.00 4.26
1463 4871 3.244491 GCCTGGTTCTATCATCATGCTCT 60.244 47.826 0.00 0.00 0.00 4.09
1464 4872 4.746089 GCCTGGTTCTATCATCATGCTCTT 60.746 45.833 0.00 0.00 0.00 2.85
1496 4904 1.383456 AAAACTCACCTGCGCTGCAA 61.383 50.000 9.73 0.00 38.41 4.08
1518 4934 2.044555 CCTGCCCTGCTCACACATG 61.045 63.158 0.00 0.00 0.00 3.21
1543 4959 3.305539 GCCTGATGTGAACATGCTGAAAA 60.306 43.478 0.00 0.00 36.57 2.29
1545 4961 5.393352 GCCTGATGTGAACATGCTGAAAATA 60.393 40.000 0.00 0.00 36.57 1.40
1546 4962 6.032094 CCTGATGTGAACATGCTGAAAATAC 58.968 40.000 0.00 0.00 36.57 1.89
1552 4968 6.072783 TGTGAACATGCTGAAAATACGATTGA 60.073 34.615 0.00 0.00 0.00 2.57
1602 5018 5.290158 CAGATCAAATGGCTGTGCAAATTAC 59.710 40.000 0.00 0.00 0.00 1.89
1610 5026 2.351738 GCTGTGCAAATTACAGGACCAC 60.352 50.000 8.55 0.00 44.36 4.16
1616 5032 1.722011 AATTACAGGACCACGAAGCG 58.278 50.000 0.00 0.00 0.00 4.68
1620 5036 2.600769 AGGACCACGAAGCGGAGT 60.601 61.111 0.00 0.00 31.69 3.85
1633 5049 5.996513 ACGAAGCGGAGTATCTTCTAGATTA 59.003 40.000 0.00 0.00 36.20 1.75
1668 5086 4.883585 TCAGATTTGTGTGATCCTAATGGC 59.116 41.667 0.00 0.00 0.00 4.40
1672 5090 5.798125 TTTGTGTGATCCTAATGGCAAAA 57.202 34.783 0.00 0.00 0.00 2.44
1694 5112 3.935315 TCTCATCTTCTTGTTGCCTCAG 58.065 45.455 0.00 0.00 0.00 3.35
1718 5136 2.880268 TCTTGTTCCGACTTACTCACGA 59.120 45.455 0.00 0.00 0.00 4.35
1732 5150 3.822996 ACTCACGATAGCGATTAATCCG 58.177 45.455 7.69 9.27 41.64 4.18
1789 5208 5.848406 GTTCTTCAGGAACTTGAAGAGAGA 58.152 41.667 21.80 10.69 45.58 3.10
1816 5235 9.717942 ATAGGTCTAAATGATTAAGCATCACTC 57.282 33.333 6.68 0.00 45.12 3.51
1853 5272 3.364068 GCCTAGACTTGTTTTGTTCGAGC 60.364 47.826 0.00 0.00 0.00 5.03
1854 5273 3.186613 CCTAGACTTGTTTTGTTCGAGCC 59.813 47.826 0.00 0.00 0.00 4.70
1856 5275 1.947456 GACTTGTTTTGTTCGAGCCCT 59.053 47.619 0.00 0.00 0.00 5.19
1875 5294 2.271800 CTTTATGCAGGGTCGACAGAC 58.728 52.381 18.91 6.96 46.34 3.51
1887 5306 0.176680 CGACAGACTGGGAATGGGAG 59.823 60.000 7.51 0.00 0.00 4.30
1894 5313 1.304381 TGGGAATGGGAGCACAAGC 60.304 57.895 0.00 0.00 42.56 4.01
1901 5320 0.746063 TGGGAGCACAAGCAAAACAG 59.254 50.000 0.00 0.00 45.49 3.16
1902 5321 0.746659 GGGAGCACAAGCAAAACAGT 59.253 50.000 0.00 0.00 45.49 3.55
1903 5322 1.536709 GGGAGCACAAGCAAAACAGTG 60.537 52.381 0.00 0.00 45.49 3.66
1904 5323 1.536709 GGAGCACAAGCAAAACAGTGG 60.537 52.381 0.00 0.00 45.49 4.00
1905 5324 1.134946 GAGCACAAGCAAAACAGTGGT 59.865 47.619 0.00 0.00 45.49 4.16
1906 5325 1.550072 AGCACAAGCAAAACAGTGGTT 59.450 42.857 0.00 0.00 45.49 3.67
1907 5326 1.926510 GCACAAGCAAAACAGTGGTTC 59.073 47.619 0.00 0.00 37.12 3.62
1908 5327 2.184448 CACAAGCAAAACAGTGGTTCG 58.816 47.619 0.00 0.00 37.12 3.95
1909 5328 2.088423 ACAAGCAAAACAGTGGTTCGA 58.912 42.857 0.00 0.00 37.12 3.71
1910 5329 2.097466 ACAAGCAAAACAGTGGTTCGAG 59.903 45.455 0.00 0.00 37.12 4.04
1911 5330 2.325583 AGCAAAACAGTGGTTCGAGA 57.674 45.000 0.00 0.00 35.82 4.04
1912 5331 2.213499 AGCAAAACAGTGGTTCGAGAG 58.787 47.619 0.00 0.00 35.82 3.20
1913 5332 1.940613 GCAAAACAGTGGTTCGAGAGT 59.059 47.619 0.00 0.00 35.82 3.24
1914 5333 2.354821 GCAAAACAGTGGTTCGAGAGTT 59.645 45.455 0.00 0.00 35.82 3.01
1915 5334 3.788797 GCAAAACAGTGGTTCGAGAGTTG 60.789 47.826 0.00 0.00 35.82 3.16
1916 5335 1.583054 AACAGTGGTTCGAGAGTTGC 58.417 50.000 0.00 0.00 29.00 4.17
1917 5336 0.753262 ACAGTGGTTCGAGAGTTGCT 59.247 50.000 0.00 0.00 0.00 3.91
1918 5337 1.143305 CAGTGGTTCGAGAGTTGCTG 58.857 55.000 0.00 0.00 0.00 4.41
1919 5338 0.601311 AGTGGTTCGAGAGTTGCTGC 60.601 55.000 0.00 0.00 0.00 5.25
1920 5339 0.880278 GTGGTTCGAGAGTTGCTGCA 60.880 55.000 0.00 0.00 0.00 4.41
1949 5368 3.125316 CAAACATGCCAAACTCCAACAG 58.875 45.455 0.00 0.00 0.00 3.16
2018 5437 5.694006 GCACACTTGCTCTATCGATTCTTAT 59.306 40.000 1.71 0.00 46.17 1.73
2035 5454 8.070171 CGATTCTTATTAAACTAGCACAATGGG 58.930 37.037 0.00 0.00 0.00 4.00
2055 5474 1.132640 GTGCATCGCAACGAGAACC 59.867 57.895 0.00 0.00 41.47 3.62
2060 5479 0.525668 ATCGCAACGAGAACCGCTAG 60.526 55.000 0.00 0.00 43.32 3.42
2081 5503 2.203070 GCGAGGTATGCCACTGGG 60.203 66.667 1.54 0.00 37.19 4.45
2084 5506 0.828022 CGAGGTATGCCACTGGGTTA 59.172 55.000 1.54 0.00 37.19 2.85
2085 5507 1.202533 CGAGGTATGCCACTGGGTTAG 60.203 57.143 1.54 0.00 37.19 2.34
2086 5508 1.141053 GAGGTATGCCACTGGGTTAGG 59.859 57.143 1.54 0.00 37.19 2.69
2087 5509 1.209621 GGTATGCCACTGGGTTAGGA 58.790 55.000 0.00 0.00 36.17 2.94
2088 5510 1.562475 GGTATGCCACTGGGTTAGGAA 59.438 52.381 0.00 0.00 36.17 3.36
2089 5511 2.025699 GGTATGCCACTGGGTTAGGAAA 60.026 50.000 0.00 0.00 36.17 3.13
2090 5512 3.372675 GGTATGCCACTGGGTTAGGAAAT 60.373 47.826 0.00 0.00 36.17 2.17
2091 5513 2.507407 TGCCACTGGGTTAGGAAATC 57.493 50.000 0.00 0.00 36.17 2.17
2092 5514 1.707989 TGCCACTGGGTTAGGAAATCA 59.292 47.619 0.00 0.00 36.17 2.57
2093 5515 2.311542 TGCCACTGGGTTAGGAAATCAT 59.688 45.455 0.00 0.00 36.17 2.45
2094 5516 2.952310 GCCACTGGGTTAGGAAATCATC 59.048 50.000 0.00 0.00 36.17 2.92
2095 5517 3.206150 CCACTGGGTTAGGAAATCATCG 58.794 50.000 0.00 0.00 0.00 3.84
2096 5518 3.206150 CACTGGGTTAGGAAATCATCGG 58.794 50.000 0.00 0.00 0.00 4.18
2097 5519 3.112263 ACTGGGTTAGGAAATCATCGGA 58.888 45.455 0.00 0.00 0.00 4.55
2098 5520 3.521937 ACTGGGTTAGGAAATCATCGGAA 59.478 43.478 0.00 0.00 0.00 4.30
2099 5521 4.130118 CTGGGTTAGGAAATCATCGGAAG 58.870 47.826 0.00 0.00 0.00 3.46
2111 5533 2.835605 TCGGAAGATGTTTGCGTCC 58.164 52.632 1.05 0.00 34.81 4.79
2112 5534 0.320374 TCGGAAGATGTTTGCGTCCT 59.680 50.000 1.05 0.00 34.81 3.85
2113 5535 1.546923 TCGGAAGATGTTTGCGTCCTA 59.453 47.619 1.05 0.00 34.81 2.94
2114 5536 2.167693 TCGGAAGATGTTTGCGTCCTAT 59.832 45.455 1.05 0.00 34.81 2.57
2115 5537 2.285220 CGGAAGATGTTTGCGTCCTATG 59.715 50.000 0.00 0.00 32.64 2.23
2116 5538 3.531538 GGAAGATGTTTGCGTCCTATGA 58.468 45.455 0.00 0.00 32.18 2.15
2117 5539 3.309954 GGAAGATGTTTGCGTCCTATGAC 59.690 47.826 0.00 0.00 38.18 3.06
2118 5540 3.895232 AGATGTTTGCGTCCTATGACT 57.105 42.857 0.00 0.00 39.47 3.41
2119 5541 3.525537 AGATGTTTGCGTCCTATGACTG 58.474 45.455 0.00 0.00 39.47 3.51
2120 5542 2.831685 TGTTTGCGTCCTATGACTGT 57.168 45.000 0.00 0.00 39.47 3.55
2121 5543 3.120321 TGTTTGCGTCCTATGACTGTT 57.880 42.857 0.00 0.00 39.47 3.16
2122 5544 4.260139 TGTTTGCGTCCTATGACTGTTA 57.740 40.909 0.00 0.00 39.47 2.41
2123 5545 4.827692 TGTTTGCGTCCTATGACTGTTAT 58.172 39.130 0.00 0.00 39.47 1.89
2124 5546 4.629634 TGTTTGCGTCCTATGACTGTTATG 59.370 41.667 0.00 0.00 39.47 1.90
2125 5547 4.465632 TTGCGTCCTATGACTGTTATGT 57.534 40.909 0.00 0.00 39.47 2.29
2126 5548 3.780902 TGCGTCCTATGACTGTTATGTG 58.219 45.455 0.00 0.00 39.47 3.21
2127 5549 3.123804 GCGTCCTATGACTGTTATGTGG 58.876 50.000 0.00 0.00 39.47 4.17
2128 5550 3.430374 GCGTCCTATGACTGTTATGTGGT 60.430 47.826 0.00 0.00 39.47 4.16
2129 5551 4.755411 CGTCCTATGACTGTTATGTGGTT 58.245 43.478 0.00 0.00 39.47 3.67
2130 5552 4.804139 CGTCCTATGACTGTTATGTGGTTC 59.196 45.833 0.00 0.00 39.47 3.62
2131 5553 5.116882 GTCCTATGACTGTTATGTGGTTCC 58.883 45.833 0.00 0.00 38.53 3.62
2132 5554 4.780554 TCCTATGACTGTTATGTGGTTCCA 59.219 41.667 0.00 0.00 0.00 3.53
2133 5555 5.249622 TCCTATGACTGTTATGTGGTTCCAA 59.750 40.000 0.00 0.00 0.00 3.53
2134 5556 5.354234 CCTATGACTGTTATGTGGTTCCAAC 59.646 44.000 0.00 0.00 0.00 3.77
2135 5557 3.135225 TGACTGTTATGTGGTTCCAACG 58.865 45.455 0.00 0.00 0.00 4.10
2136 5558 3.181464 TGACTGTTATGTGGTTCCAACGA 60.181 43.478 0.00 0.00 0.00 3.85
2137 5559 4.000988 GACTGTTATGTGGTTCCAACGAT 58.999 43.478 0.00 0.00 0.00 3.73
2138 5560 4.394729 ACTGTTATGTGGTTCCAACGATT 58.605 39.130 0.00 0.00 0.00 3.34
2139 5561 5.553123 ACTGTTATGTGGTTCCAACGATTA 58.447 37.500 0.00 0.00 0.00 1.75
2140 5562 5.642063 ACTGTTATGTGGTTCCAACGATTAG 59.358 40.000 0.00 0.00 0.00 1.73
2141 5563 5.795972 TGTTATGTGGTTCCAACGATTAGA 58.204 37.500 0.00 0.00 0.00 2.10
2142 5564 6.231951 TGTTATGTGGTTCCAACGATTAGAA 58.768 36.000 0.00 0.00 0.00 2.10
2143 5565 6.711194 TGTTATGTGGTTCCAACGATTAGAAA 59.289 34.615 0.00 0.00 0.00 2.52
2144 5566 7.228906 TGTTATGTGGTTCCAACGATTAGAAAA 59.771 33.333 0.00 0.00 0.00 2.29
2145 5567 5.682943 TGTGGTTCCAACGATTAGAAAAG 57.317 39.130 0.00 0.00 0.00 2.27
2146 5568 5.369833 TGTGGTTCCAACGATTAGAAAAGA 58.630 37.500 0.00 0.00 0.00 2.52
2147 5569 5.468746 TGTGGTTCCAACGATTAGAAAAGAG 59.531 40.000 0.00 0.00 0.00 2.85
2148 5570 5.699458 GTGGTTCCAACGATTAGAAAAGAGA 59.301 40.000 0.00 0.00 0.00 3.10
2149 5571 6.204108 GTGGTTCCAACGATTAGAAAAGAGAA 59.796 38.462 0.00 0.00 0.00 2.87
2150 5572 6.204108 TGGTTCCAACGATTAGAAAAGAGAAC 59.796 38.462 0.00 0.00 0.00 3.01
2151 5573 6.204108 GGTTCCAACGATTAGAAAAGAGAACA 59.796 38.462 0.00 0.00 33.32 3.18
2152 5574 7.255001 GGTTCCAACGATTAGAAAAGAGAACAA 60.255 37.037 0.00 0.00 33.32 2.83
2153 5575 7.421530 TCCAACGATTAGAAAAGAGAACAAG 57.578 36.000 0.00 0.00 0.00 3.16
2154 5576 7.214381 TCCAACGATTAGAAAAGAGAACAAGA 58.786 34.615 0.00 0.00 0.00 3.02
2155 5577 7.713507 TCCAACGATTAGAAAAGAGAACAAGAA 59.286 33.333 0.00 0.00 0.00 2.52
2156 5578 8.507249 CCAACGATTAGAAAAGAGAACAAGAAT 58.493 33.333 0.00 0.00 0.00 2.40
2163 5585 9.672673 TTAGAAAAGAGAACAAGAATATGAGGG 57.327 33.333 0.00 0.00 0.00 4.30
2164 5586 6.601217 AGAAAAGAGAACAAGAATATGAGGGC 59.399 38.462 0.00 0.00 0.00 5.19
2165 5587 4.429854 AGAGAACAAGAATATGAGGGCC 57.570 45.455 0.00 0.00 0.00 5.80
2166 5588 3.782523 AGAGAACAAGAATATGAGGGCCA 59.217 43.478 6.18 0.00 0.00 5.36
2167 5589 4.228210 AGAGAACAAGAATATGAGGGCCAA 59.772 41.667 6.18 0.00 0.00 4.52
2168 5590 4.934356 AGAACAAGAATATGAGGGCCAAA 58.066 39.130 6.18 0.00 0.00 3.28
2169 5591 5.522641 AGAACAAGAATATGAGGGCCAAAT 58.477 37.500 6.18 0.43 0.00 2.32
2170 5592 5.960202 AGAACAAGAATATGAGGGCCAAATT 59.040 36.000 6.18 0.00 0.00 1.82
2171 5593 5.603170 ACAAGAATATGAGGGCCAAATTG 57.397 39.130 6.18 1.65 0.00 2.32
2172 5594 4.141869 ACAAGAATATGAGGGCCAAATTGC 60.142 41.667 6.18 0.00 0.00 3.56
2173 5595 3.645434 AGAATATGAGGGCCAAATTGCA 58.355 40.909 6.18 0.00 0.00 4.08
2174 5596 3.640029 AGAATATGAGGGCCAAATTGCAG 59.360 43.478 6.18 0.00 0.00 4.41
2175 5597 2.824689 TATGAGGGCCAAATTGCAGA 57.175 45.000 6.18 0.00 0.00 4.26
2176 5598 1.941377 ATGAGGGCCAAATTGCAGAA 58.059 45.000 6.18 0.00 0.00 3.02
2177 5599 1.941377 TGAGGGCCAAATTGCAGAAT 58.059 45.000 6.18 0.00 0.00 2.40
2178 5600 1.551430 TGAGGGCCAAATTGCAGAATG 59.449 47.619 6.18 0.00 40.87 2.67
2179 5601 1.551883 GAGGGCCAAATTGCAGAATGT 59.448 47.619 6.18 0.00 39.31 2.71
2180 5602 1.276989 AGGGCCAAATTGCAGAATGTG 59.723 47.619 6.18 0.00 39.31 3.21
2181 5603 1.275856 GGGCCAAATTGCAGAATGTGA 59.724 47.619 4.39 0.00 39.31 3.58
2182 5604 2.613691 GGCCAAATTGCAGAATGTGAG 58.386 47.619 0.00 0.00 39.31 3.51
2183 5605 2.613691 GCCAAATTGCAGAATGTGAGG 58.386 47.619 0.00 0.00 39.31 3.86
2184 5606 2.613691 CCAAATTGCAGAATGTGAGGC 58.386 47.619 0.00 0.00 39.31 4.70
2185 5607 2.256174 CAAATTGCAGAATGTGAGGCG 58.744 47.619 0.00 0.00 39.31 5.52
2186 5608 1.538047 AATTGCAGAATGTGAGGCGT 58.462 45.000 0.00 0.00 39.31 5.68
2187 5609 1.538047 ATTGCAGAATGTGAGGCGTT 58.462 45.000 0.00 0.00 39.31 4.84
2188 5610 0.874390 TTGCAGAATGTGAGGCGTTC 59.126 50.000 0.00 0.00 42.06 3.95
2189 5611 1.291184 TGCAGAATGTGAGGCGTTCG 61.291 55.000 0.00 0.00 45.34 3.95
2190 5612 1.014044 GCAGAATGTGAGGCGTTCGA 61.014 55.000 0.00 0.00 45.34 3.71
2191 5613 0.994995 CAGAATGTGAGGCGTTCGAG 59.005 55.000 0.00 0.00 45.34 4.04
2192 5614 0.737715 AGAATGTGAGGCGTTCGAGC 60.738 55.000 0.00 0.00 45.34 5.03
2193 5615 1.005037 AATGTGAGGCGTTCGAGCA 60.005 52.632 0.00 0.00 39.27 4.26
2194 5616 0.391661 AATGTGAGGCGTTCGAGCAT 60.392 50.000 0.00 0.00 39.27 3.79
2195 5617 0.807667 ATGTGAGGCGTTCGAGCATC 60.808 55.000 4.54 4.54 46.74 3.91
2196 5618 2.167861 GTGAGGCGTTCGAGCATCC 61.168 63.158 8.57 4.43 46.09 3.51
2197 5619 2.184322 GAGGCGTTCGAGCATCCA 59.816 61.111 9.57 0.00 41.50 3.41
2198 5620 1.447838 GAGGCGTTCGAGCATCCAA 60.448 57.895 9.57 0.00 41.50 3.53
2199 5621 1.003839 AGGCGTTCGAGCATCCAAA 60.004 52.632 9.57 0.00 39.27 3.28
2200 5622 1.021390 AGGCGTTCGAGCATCCAAAG 61.021 55.000 9.57 0.00 39.27 2.77
2201 5623 1.298859 GGCGTTCGAGCATCCAAAGT 61.299 55.000 0.00 0.00 39.27 2.66
2202 5624 0.179215 GCGTTCGAGCATCCAAAGTG 60.179 55.000 0.00 0.00 37.05 3.16
2203 5625 1.428448 CGTTCGAGCATCCAAAGTGA 58.572 50.000 0.00 0.00 0.00 3.41
2204 5626 1.126846 CGTTCGAGCATCCAAAGTGAC 59.873 52.381 0.00 0.00 0.00 3.67
2205 5627 1.464997 GTTCGAGCATCCAAAGTGACC 59.535 52.381 0.00 0.00 0.00 4.02
2206 5628 0.684535 TCGAGCATCCAAAGTGACCA 59.315 50.000 0.00 0.00 0.00 4.02
2207 5629 1.278985 TCGAGCATCCAAAGTGACCAT 59.721 47.619 0.00 0.00 0.00 3.55
2208 5630 2.086869 CGAGCATCCAAAGTGACCATT 58.913 47.619 0.00 0.00 0.00 3.16
2209 5631 2.159476 CGAGCATCCAAAGTGACCATTG 60.159 50.000 0.00 0.00 0.00 2.82
2210 5632 3.084039 GAGCATCCAAAGTGACCATTGA 58.916 45.455 0.84 0.00 0.00 2.57
2211 5633 3.698040 GAGCATCCAAAGTGACCATTGAT 59.302 43.478 0.84 0.00 0.00 2.57
2212 5634 4.858850 AGCATCCAAAGTGACCATTGATA 58.141 39.130 0.84 0.00 0.00 2.15
2213 5635 5.452255 AGCATCCAAAGTGACCATTGATAT 58.548 37.500 0.84 0.00 0.00 1.63
2214 5636 5.301045 AGCATCCAAAGTGACCATTGATATG 59.699 40.000 0.84 5.45 0.00 1.78
2215 5637 5.300034 GCATCCAAAGTGACCATTGATATGA 59.700 40.000 13.22 0.89 33.37 2.15
2216 5638 6.732154 CATCCAAAGTGACCATTGATATGAC 58.268 40.000 0.84 0.00 33.37 3.06
2217 5639 5.814481 TCCAAAGTGACCATTGATATGACA 58.186 37.500 0.84 0.00 33.37 3.58
2218 5640 6.244654 TCCAAAGTGACCATTGATATGACAA 58.755 36.000 0.84 0.00 33.37 3.18
2219 5641 6.718912 TCCAAAGTGACCATTGATATGACAAA 59.281 34.615 0.84 0.00 33.37 2.83
2220 5642 7.232330 TCCAAAGTGACCATTGATATGACAAAA 59.768 33.333 0.84 0.00 33.37 2.44
2221 5643 8.036575 CCAAAGTGACCATTGATATGACAAAAT 58.963 33.333 0.84 0.00 33.37 1.82
2222 5644 8.865978 CAAAGTGACCATTGATATGACAAAATG 58.134 33.333 0.00 0.00 33.37 2.32
2223 5645 7.707624 AGTGACCATTGATATGACAAAATGT 57.292 32.000 0.00 0.00 33.37 2.71
2224 5646 7.541162 AGTGACCATTGATATGACAAAATGTG 58.459 34.615 0.00 0.00 33.37 3.21
2225 5647 6.753279 GTGACCATTGATATGACAAAATGTGG 59.247 38.462 0.00 0.00 34.40 4.17
2226 5648 6.436847 TGACCATTGATATGACAAAATGTGGT 59.563 34.615 0.00 0.00 40.09 4.16
2227 5649 6.866480 ACCATTGATATGACAAAATGTGGTC 58.134 36.000 0.00 0.00 35.74 4.02
2228 5650 6.127366 ACCATTGATATGACAAAATGTGGTCC 60.127 38.462 0.00 0.00 35.74 4.46
2229 5651 5.559427 TTGATATGACAAAATGTGGTCCG 57.441 39.130 0.00 0.00 33.09 4.79
2230 5652 4.837972 TGATATGACAAAATGTGGTCCGA 58.162 39.130 0.00 0.00 33.09 4.55
2231 5653 5.249420 TGATATGACAAAATGTGGTCCGAA 58.751 37.500 0.00 0.00 33.09 4.30
2232 5654 5.885352 TGATATGACAAAATGTGGTCCGAAT 59.115 36.000 0.00 0.00 33.09 3.34
2233 5655 6.376864 TGATATGACAAAATGTGGTCCGAATT 59.623 34.615 0.00 0.00 33.09 2.17
2234 5656 4.235939 TGACAAAATGTGGTCCGAATTG 57.764 40.909 0.00 0.00 33.09 2.32
2235 5657 2.986479 GACAAAATGTGGTCCGAATTGC 59.014 45.455 0.00 0.00 0.00 3.56
2236 5658 2.627699 ACAAAATGTGGTCCGAATTGCT 59.372 40.909 0.00 0.00 0.00 3.91
2237 5659 3.069443 ACAAAATGTGGTCCGAATTGCTT 59.931 39.130 0.00 0.00 0.00 3.91
2238 5660 3.302365 AAATGTGGTCCGAATTGCTTG 57.698 42.857 0.00 0.00 0.00 4.01
2239 5661 1.909700 ATGTGGTCCGAATTGCTTGT 58.090 45.000 0.00 0.00 0.00 3.16
2240 5662 0.950836 TGTGGTCCGAATTGCTTGTG 59.049 50.000 0.00 0.00 0.00 3.33
2241 5663 1.234821 GTGGTCCGAATTGCTTGTGA 58.765 50.000 0.00 0.00 0.00 3.58
2242 5664 1.069227 GTGGTCCGAATTGCTTGTGAC 60.069 52.381 0.00 0.00 0.00 3.67
2243 5665 1.234821 GGTCCGAATTGCTTGTGACA 58.765 50.000 0.00 0.00 0.00 3.58
2244 5666 1.812571 GGTCCGAATTGCTTGTGACAT 59.187 47.619 0.00 0.00 0.00 3.06
2245 5667 2.228822 GGTCCGAATTGCTTGTGACATT 59.771 45.455 0.00 0.00 0.00 2.71
2246 5668 3.305335 GGTCCGAATTGCTTGTGACATTT 60.305 43.478 0.00 0.00 0.00 2.32
2247 5669 4.083003 GGTCCGAATTGCTTGTGACATTTA 60.083 41.667 0.00 0.00 0.00 1.40
2248 5670 5.457140 GTCCGAATTGCTTGTGACATTTAA 58.543 37.500 0.00 0.00 0.00 1.52
2249 5671 5.918011 GTCCGAATTGCTTGTGACATTTAAA 59.082 36.000 0.00 0.00 0.00 1.52
2250 5672 6.088085 GTCCGAATTGCTTGTGACATTTAAAG 59.912 38.462 0.00 0.00 0.00 1.85
2251 5673 5.164061 CCGAATTGCTTGTGACATTTAAAGC 60.164 40.000 0.00 0.00 44.18 3.51
2252 5674 5.441872 CGAATTGCTTGTGACATTTAAAGCG 60.442 40.000 2.25 0.00 46.32 4.68
2253 5675 3.980646 TGCTTGTGACATTTAAAGCGT 57.019 38.095 2.25 0.00 46.32 5.07
2254 5676 3.626977 TGCTTGTGACATTTAAAGCGTG 58.373 40.909 2.25 0.00 46.32 5.34
2255 5677 3.313803 TGCTTGTGACATTTAAAGCGTGA 59.686 39.130 2.25 0.00 46.32 4.35
2256 5678 3.908382 GCTTGTGACATTTAAAGCGTGAG 59.092 43.478 0.00 0.00 36.07 3.51
2257 5679 4.319477 GCTTGTGACATTTAAAGCGTGAGA 60.319 41.667 0.00 0.00 36.07 3.27
2258 5680 4.725556 TGTGACATTTAAAGCGTGAGAC 57.274 40.909 0.00 0.00 0.00 3.36
2259 5681 3.183574 TGTGACATTTAAAGCGTGAGACG 59.816 43.478 0.00 0.00 45.88 4.18
2260 5682 3.427528 GTGACATTTAAAGCGTGAGACGA 59.572 43.478 0.00 0.00 46.05 4.20
2261 5683 3.427528 TGACATTTAAAGCGTGAGACGAC 59.572 43.478 0.00 0.00 46.05 4.34
2262 5684 3.386486 ACATTTAAAGCGTGAGACGACA 58.614 40.909 0.00 0.00 46.05 4.35
2263 5685 3.994392 ACATTTAAAGCGTGAGACGACAT 59.006 39.130 0.00 0.00 46.05 3.06
2264 5686 4.451096 ACATTTAAAGCGTGAGACGACATT 59.549 37.500 0.00 0.00 46.05 2.71
2265 5687 5.049680 ACATTTAAAGCGTGAGACGACATTT 60.050 36.000 0.00 0.85 46.05 2.32
2266 5688 4.640805 TTAAAGCGTGAGACGACATTTC 57.359 40.909 0.00 0.00 46.05 2.17
2267 5689 2.148916 AAGCGTGAGACGACATTTCA 57.851 45.000 0.00 0.00 46.05 2.69
2268 5690 2.148916 AGCGTGAGACGACATTTCAA 57.851 45.000 0.00 0.00 46.05 2.69
2269 5691 2.479837 AGCGTGAGACGACATTTCAAA 58.520 42.857 0.00 0.00 46.05 2.69
2270 5692 3.067106 AGCGTGAGACGACATTTCAAAT 58.933 40.909 0.00 0.00 46.05 2.32
2271 5693 3.498397 AGCGTGAGACGACATTTCAAATT 59.502 39.130 0.00 0.00 46.05 1.82
2272 5694 4.024048 AGCGTGAGACGACATTTCAAATTT 60.024 37.500 0.00 0.00 46.05 1.82
2273 5695 4.675114 GCGTGAGACGACATTTCAAATTTT 59.325 37.500 0.00 0.00 46.05 1.82
2274 5696 5.386323 GCGTGAGACGACATTTCAAATTTTG 60.386 40.000 2.59 2.59 46.05 2.44
2275 5697 5.906838 CGTGAGACGACATTTCAAATTTTGA 59.093 36.000 7.74 7.74 46.05 2.69
2276 5698 6.413526 CGTGAGACGACATTTCAAATTTTGAA 59.586 34.615 18.29 18.29 46.05 2.69
2287 5709 4.450053 TCAAATTTTGAAACTGGGCAAGG 58.550 39.130 9.36 0.00 36.59 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 3297 7.610580 AAACCTTCCATAAGAAACCATTCAA 57.389 32.000 0.00 0.00 38.06 2.69
66 3351 9.185192 GAAAAATAAGGAGAAAATGGCATATCG 57.815 33.333 0.00 0.00 0.00 2.92
105 3390 7.402054 ACAATATACCATCAAGAACACCTTCA 58.598 34.615 0.00 0.00 31.42 3.02
111 3396 9.772973 GGTATGTACAATATACCATCAAGAACA 57.227 33.333 16.11 0.00 46.03 3.18
170 3455 3.314635 GTCATCAACATCTTGATCAGCCC 59.685 47.826 0.00 0.00 44.04 5.19
192 3492 9.782028 CTGTTTCAATGATTTTTGTAAACATCG 57.218 29.630 0.00 0.00 36.79 3.84
208 3508 7.486647 CATTCTTCCTAATCCCTGTTTCAATG 58.513 38.462 0.00 0.00 0.00 2.82
215 3515 4.349342 CCTAGCATTCTTCCTAATCCCTGT 59.651 45.833 0.00 0.00 0.00 4.00
219 3519 9.746457 AATTAATCCTAGCATTCTTCCTAATCC 57.254 33.333 0.00 0.00 0.00 3.01
390 3690 8.868522 ATTGTGATGATGTCCGGATTTATATT 57.131 30.769 7.81 0.00 0.00 1.28
400 3700 5.163733 TGTTGATTGATTGTGATGATGTCCG 60.164 40.000 0.00 0.00 0.00 4.79
402 3702 5.742453 GCTGTTGATTGATTGTGATGATGTC 59.258 40.000 0.00 0.00 0.00 3.06
423 3723 7.618442 ACAGTAACGAATAATAACAATCGCTG 58.382 34.615 0.00 0.00 38.80 5.18
494 3826 3.922240 GTCCGTATTCAAAGTTACGCTGA 59.078 43.478 0.00 0.00 39.78 4.26
495 3827 3.924686 AGTCCGTATTCAAAGTTACGCTG 59.075 43.478 0.00 0.00 39.78 5.18
496 3828 4.184079 AGTCCGTATTCAAAGTTACGCT 57.816 40.909 0.00 0.00 39.78 5.07
534 3868 8.221766 GTCTAAGTTGTCCGTATTCTTCTTTTG 58.778 37.037 0.00 0.00 0.00 2.44
537 3877 7.229581 AGTCTAAGTTGTCCGTATTCTTCTT 57.770 36.000 0.00 0.00 0.00 2.52
538 3878 6.837471 AGTCTAAGTTGTCCGTATTCTTCT 57.163 37.500 0.00 0.00 0.00 2.85
539 3879 7.062022 GTCAAGTCTAAGTTGTCCGTATTCTTC 59.938 40.741 0.00 0.00 30.75 2.87
540 3880 6.867293 GTCAAGTCTAAGTTGTCCGTATTCTT 59.133 38.462 0.00 0.00 30.75 2.52
541 3881 6.015688 TGTCAAGTCTAAGTTGTCCGTATTCT 60.016 38.462 0.00 0.00 30.75 2.40
542 3882 6.154445 TGTCAAGTCTAAGTTGTCCGTATTC 58.846 40.000 0.00 0.00 30.75 1.75
543 3883 6.015688 TCTGTCAAGTCTAAGTTGTCCGTATT 60.016 38.462 0.00 0.00 30.75 1.89
544 3884 5.475909 TCTGTCAAGTCTAAGTTGTCCGTAT 59.524 40.000 0.00 0.00 30.75 3.06
552 3892 3.181469 TGCGGTTCTGTCAAGTCTAAGTT 60.181 43.478 0.00 0.00 0.00 2.66
557 3897 1.940613 GTTTGCGGTTCTGTCAAGTCT 59.059 47.619 0.00 0.00 0.00 3.24
571 3911 2.671070 GCCAACCATCTAAAGGTTTGCG 60.671 50.000 5.57 0.00 46.85 4.85
610 3950 2.875933 TCAAACTAGCGTGGTCTTTTGG 59.124 45.455 0.00 0.00 0.00 3.28
625 3965 8.230486 CGAACAACAGCTCTTATATTTCAAACT 58.770 33.333 0.00 0.00 0.00 2.66
636 3976 6.665474 TTTACAAACGAACAACAGCTCTTA 57.335 33.333 0.00 0.00 0.00 2.10
639 3979 5.090083 TGTTTTACAAACGAACAACAGCTC 58.910 37.500 0.00 0.00 30.96 4.09
641 3981 5.748872 TTGTTTTACAAACGAACAACAGC 57.251 34.783 0.00 0.00 38.09 4.40
645 3985 6.616682 GCAGCTTTTGTTTTACAAACGAACAA 60.617 34.615 11.48 0.00 46.53 2.83
646 3986 5.164041 GCAGCTTTTGTTTTACAAACGAACA 60.164 36.000 11.48 0.00 46.53 3.18
647 3987 5.061684 AGCAGCTTTTGTTTTACAAACGAAC 59.938 36.000 11.48 2.27 46.53 3.95
655 3995 3.551485 CACCACAGCAGCTTTTGTTTTAC 59.449 43.478 0.00 0.00 0.00 2.01
658 3998 1.550072 ACACCACAGCAGCTTTTGTTT 59.450 42.857 0.00 0.00 0.00 2.83
660 4000 1.949525 CTACACCACAGCAGCTTTTGT 59.050 47.619 0.00 0.00 0.00 2.83
663 4003 1.597742 CACTACACCACAGCAGCTTT 58.402 50.000 0.00 0.00 0.00 3.51
748 4091 4.265073 ACGGGAAAAGATGGAAGAGATTG 58.735 43.478 0.00 0.00 0.00 2.67
754 4097 3.939066 ACAGTACGGGAAAAGATGGAAG 58.061 45.455 0.00 0.00 0.00 3.46
762 4105 3.132925 GTGCAGTTACAGTACGGGAAAA 58.867 45.455 0.00 0.00 0.00 2.29
764 4107 1.687660 TGTGCAGTTACAGTACGGGAA 59.312 47.619 0.00 0.00 0.00 3.97
766 4109 1.796459 GTTGTGCAGTTACAGTACGGG 59.204 52.381 0.00 0.00 0.00 5.28
767 4110 2.475818 TGTTGTGCAGTTACAGTACGG 58.524 47.619 0.00 0.00 0.00 4.02
768 4111 3.987868 AGATGTTGTGCAGTTACAGTACG 59.012 43.478 0.00 0.00 0.00 3.67
769 4112 4.988540 TGAGATGTTGTGCAGTTACAGTAC 59.011 41.667 0.00 0.00 0.00 2.73
770 4113 4.988540 GTGAGATGTTGTGCAGTTACAGTA 59.011 41.667 0.00 0.00 0.00 2.74
771 4114 3.809832 GTGAGATGTTGTGCAGTTACAGT 59.190 43.478 0.00 0.00 0.00 3.55
772 4115 3.120889 CGTGAGATGTTGTGCAGTTACAG 60.121 47.826 0.00 0.00 0.00 2.74
774 4117 3.057019 TCGTGAGATGTTGTGCAGTTAC 58.943 45.455 0.00 0.00 33.31 2.50
775 4118 3.057019 GTCGTGAGATGTTGTGCAGTTA 58.943 45.455 0.00 0.00 45.19 2.24
776 4119 1.867233 GTCGTGAGATGTTGTGCAGTT 59.133 47.619 0.00 0.00 45.19 3.16
777 4120 1.069204 AGTCGTGAGATGTTGTGCAGT 59.931 47.619 0.00 0.00 45.19 4.40
778 4121 1.723542 GAGTCGTGAGATGTTGTGCAG 59.276 52.381 0.00 0.00 45.19 4.41
779 4122 1.341209 AGAGTCGTGAGATGTTGTGCA 59.659 47.619 0.00 0.00 45.19 4.57
780 4123 2.071688 AGAGTCGTGAGATGTTGTGC 57.928 50.000 0.00 0.00 45.19 4.57
781 4124 5.200454 CAAAAAGAGTCGTGAGATGTTGTG 58.800 41.667 0.00 0.00 45.19 3.33
782 4125 4.273480 CCAAAAAGAGTCGTGAGATGTTGT 59.727 41.667 0.00 0.00 45.19 3.32
783 4126 4.273480 ACCAAAAAGAGTCGTGAGATGTTG 59.727 41.667 0.00 0.00 45.19 3.33
784 4127 4.451900 ACCAAAAAGAGTCGTGAGATGTT 58.548 39.130 0.00 0.00 45.19 2.71
785 4128 4.058817 GACCAAAAAGAGTCGTGAGATGT 58.941 43.478 0.00 0.00 45.19 3.06
786 4129 3.433615 GGACCAAAAAGAGTCGTGAGATG 59.566 47.826 0.00 0.00 45.19 2.90
788 4131 2.224209 GGGACCAAAAAGAGTCGTGAGA 60.224 50.000 0.00 0.00 33.66 3.27
794 4137 0.875059 CAGCGGGACCAAAAAGAGTC 59.125 55.000 0.00 0.00 0.00 3.36
796 4139 1.581447 GCAGCGGGACCAAAAAGAG 59.419 57.895 0.00 0.00 0.00 2.85
804 4147 3.838271 TGAGATCGCAGCGGGACC 61.838 66.667 16.42 3.13 0.00 4.46
806 4149 4.193334 CGTGAGATCGCAGCGGGA 62.193 66.667 16.42 0.00 0.00 5.14
818 4161 4.030753 GTCGCAACTAGAAAGAATCGTGAG 59.969 45.833 0.00 0.00 0.00 3.51
819 4162 3.918591 GTCGCAACTAGAAAGAATCGTGA 59.081 43.478 0.00 0.00 0.00 4.35
820 4163 3.241364 CGTCGCAACTAGAAAGAATCGTG 60.241 47.826 0.00 0.00 0.00 4.35
822 4165 3.168963 TCGTCGCAACTAGAAAGAATCG 58.831 45.455 0.00 0.00 0.00 3.34
823 4166 5.511088 TTTCGTCGCAACTAGAAAGAATC 57.489 39.130 0.00 0.00 0.00 2.52
825 4168 5.917541 AATTTCGTCGCAACTAGAAAGAA 57.082 34.783 0.00 0.00 36.26 2.52
826 4169 5.694910 AGAAATTTCGTCGCAACTAGAAAGA 59.305 36.000 12.42 0.00 36.26 2.52
827 4170 5.785599 CAGAAATTTCGTCGCAACTAGAAAG 59.214 40.000 12.42 0.00 36.26 2.62
829 4172 4.748102 ACAGAAATTTCGTCGCAACTAGAA 59.252 37.500 12.42 0.00 0.00 2.10
833 4198 3.064820 ACAACAGAAATTTCGTCGCAACT 59.935 39.130 12.42 0.00 0.00 3.16
854 4219 3.619038 TGCCGAAAAATGTTTGTTGGAAC 59.381 39.130 6.18 0.00 31.50 3.62
855 4220 3.861840 TGCCGAAAAATGTTTGTTGGAA 58.138 36.364 6.18 0.00 31.50 3.53
856 4221 3.526931 TGCCGAAAAATGTTTGTTGGA 57.473 38.095 6.18 0.00 31.50 3.53
862 4227 2.540265 TGGCATGCCGAAAAATGTTT 57.460 40.000 30.87 0.00 39.42 2.83
863 4228 2.142319 GTTGGCATGCCGAAAAATGTT 58.858 42.857 28.68 0.00 39.42 2.71
864 4229 1.607767 GGTTGGCATGCCGAAAAATGT 60.608 47.619 28.68 0.00 39.42 2.71
867 4232 1.118356 AGGGTTGGCATGCCGAAAAA 61.118 50.000 28.68 15.68 39.42 1.94
888 4253 3.578716 CCAACAGTCTCTCTTCCCAGTTA 59.421 47.826 0.00 0.00 0.00 2.24
889 4254 2.370189 CCAACAGTCTCTCTTCCCAGTT 59.630 50.000 0.00 0.00 0.00 3.16
890 4255 1.974236 CCAACAGTCTCTCTTCCCAGT 59.026 52.381 0.00 0.00 0.00 4.00
891 4256 1.974236 ACCAACAGTCTCTCTTCCCAG 59.026 52.381 0.00 0.00 0.00 4.45
892 4257 2.103153 ACCAACAGTCTCTCTTCCCA 57.897 50.000 0.00 0.00 0.00 4.37
913 4278 2.381188 CGTGACTCTGCAGCTGCTG 61.381 63.158 36.61 34.64 42.66 4.41
914 4279 2.048409 CGTGACTCTGCAGCTGCT 60.048 61.111 36.61 19.14 42.66 4.24
915 4280 2.492449 TACCGTGACTCTGCAGCTGC 62.492 60.000 31.89 31.89 42.50 5.25
935 4300 3.202906 TGAAGGTTCACTAGTGTTGTGC 58.797 45.455 21.99 9.47 35.58 4.57
936 4301 3.809832 CCTGAAGGTTCACTAGTGTTGTG 59.190 47.826 21.99 0.00 36.82 3.33
937 4302 3.744530 GCCTGAAGGTTCACTAGTGTTGT 60.745 47.826 21.99 5.06 37.57 3.32
963 4353 4.394078 TCTCGGTTGACGCGACGG 62.394 66.667 15.93 5.25 43.86 4.79
977 4367 0.041982 AACCACCCCTCCTCTCTCTC 59.958 60.000 0.00 0.00 0.00 3.20
978 4368 1.394532 TAACCACCCCTCCTCTCTCT 58.605 55.000 0.00 0.00 0.00 3.10
979 4369 2.249309 TTAACCACCCCTCCTCTCTC 57.751 55.000 0.00 0.00 0.00 3.20
980 4370 2.735259 TTTAACCACCCCTCCTCTCT 57.265 50.000 0.00 0.00 0.00 3.10
981 4371 3.621558 CATTTTAACCACCCCTCCTCTC 58.378 50.000 0.00 0.00 0.00 3.20
982 4372 2.311841 CCATTTTAACCACCCCTCCTCT 59.688 50.000 0.00 0.00 0.00 3.69
983 4373 2.735151 CCATTTTAACCACCCCTCCTC 58.265 52.381 0.00 0.00 0.00 3.71
984 4374 1.273041 GCCATTTTAACCACCCCTCCT 60.273 52.381 0.00 0.00 0.00 3.69
986 4376 0.815095 CGCCATTTTAACCACCCCTC 59.185 55.000 0.00 0.00 0.00 4.30
989 4379 2.096248 TCATCGCCATTTTAACCACCC 58.904 47.619 0.00 0.00 0.00 4.61
990 4380 2.099098 CCTCATCGCCATTTTAACCACC 59.901 50.000 0.00 0.00 0.00 4.61
991 4381 2.099098 CCCTCATCGCCATTTTAACCAC 59.901 50.000 0.00 0.00 0.00 4.16
992 4382 2.374184 CCCTCATCGCCATTTTAACCA 58.626 47.619 0.00 0.00 0.00 3.67
993 4383 1.681264 CCCCTCATCGCCATTTTAACC 59.319 52.381 0.00 0.00 0.00 2.85
994 4384 1.067060 GCCCCTCATCGCCATTTTAAC 59.933 52.381 0.00 0.00 0.00 2.01
995 4385 1.398692 GCCCCTCATCGCCATTTTAA 58.601 50.000 0.00 0.00 0.00 1.52
996 4386 0.817634 CGCCCCTCATCGCCATTTTA 60.818 55.000 0.00 0.00 0.00 1.52
997 4387 2.120909 CGCCCCTCATCGCCATTTT 61.121 57.895 0.00 0.00 0.00 1.82
998 4388 2.516930 CGCCCCTCATCGCCATTT 60.517 61.111 0.00 0.00 0.00 2.32
999 4389 4.569180 CCGCCCCTCATCGCCATT 62.569 66.667 0.00 0.00 0.00 3.16
1344 4739 8.833493 AGTACATTTTATTATCCGCTTACAACC 58.167 33.333 0.00 0.00 0.00 3.77
1371 4766 2.639065 TCCAGTGCGAAAAACAGTTCT 58.361 42.857 0.00 0.00 0.00 3.01
1394 4799 2.307768 CCAGCGATAACAGTAGGGAGA 58.692 52.381 0.00 0.00 0.00 3.71
1395 4800 2.032620 ACCAGCGATAACAGTAGGGAG 58.967 52.381 0.00 0.00 0.00 4.30
1409 4817 5.560966 AATACTTTGAAACCATACCAGCG 57.439 39.130 0.00 0.00 0.00 5.18
1430 4838 6.480763 TGATAGAACCAGGCACAGATTAAAA 58.519 36.000 0.00 0.00 0.00 1.52
1459 4867 9.548208 GTGAGTTTTCAATGAACTAATAAGAGC 57.452 33.333 0.00 0.00 37.46 4.09
1461 4869 9.793259 AGGTGAGTTTTCAATGAACTAATAAGA 57.207 29.630 0.00 0.00 37.46 2.10
1462 4870 9.831737 CAGGTGAGTTTTCAATGAACTAATAAG 57.168 33.333 0.00 0.00 37.46 1.73
1463 4871 8.296713 GCAGGTGAGTTTTCAATGAACTAATAA 58.703 33.333 0.00 0.00 37.46 1.40
1464 4872 7.360861 CGCAGGTGAGTTTTCAATGAACTAATA 60.361 37.037 0.00 0.00 37.46 0.98
1474 4882 3.094386 AGCGCAGGTGAGTTTTCAA 57.906 47.368 11.47 0.00 36.17 2.69
1496 4904 2.362120 GTGAGCAGGGCAGGCATT 60.362 61.111 0.00 0.00 0.00 3.56
1505 4913 0.251354 AGGCTACATGTGTGAGCAGG 59.749 55.000 18.36 0.00 37.98 4.85
1533 4949 4.678287 GCCATCAATCGTATTTTCAGCATG 59.322 41.667 0.00 0.00 37.54 4.06
1543 4959 5.509840 GGTCAACTAGAGCCATCAATCGTAT 60.510 44.000 0.00 0.00 38.82 3.06
1545 4961 3.430929 GGTCAACTAGAGCCATCAATCGT 60.431 47.826 0.00 0.00 38.82 3.73
1546 4962 3.126831 GGTCAACTAGAGCCATCAATCG 58.873 50.000 0.00 0.00 38.82 3.34
1552 4968 0.543749 GCCTGGTCAACTAGAGCCAT 59.456 55.000 0.00 0.00 44.10 4.40
1602 5018 1.592400 TACTCCGCTTCGTGGTCCTG 61.592 60.000 0.00 0.00 34.40 3.86
1610 5026 5.365403 AATCTAGAAGATACTCCGCTTCG 57.635 43.478 0.00 0.00 43.94 3.79
1616 5032 6.205076 TGTCGCTGTAATCTAGAAGATACTCC 59.795 42.308 0.00 0.00 32.89 3.85
1620 5036 7.941919 ACAATGTCGCTGTAATCTAGAAGATA 58.058 34.615 0.00 0.00 32.89 1.98
1633 5049 3.058708 CACAAATCTGACAATGTCGCTGT 60.059 43.478 9.00 4.66 34.95 4.40
1668 5086 6.022163 AGGCAACAAGAAGATGAGATTTTG 57.978 37.500 0.00 0.00 41.41 2.44
1672 5090 4.515361 CTGAGGCAACAAGAAGATGAGAT 58.485 43.478 0.00 0.00 41.41 2.75
1694 5112 3.739810 GTGAGTAAGTCGGAACAAGAACC 59.260 47.826 0.00 0.00 0.00 3.62
1732 5150 6.620678 ACATCACACAAATTGTAATGGTAGC 58.379 36.000 15.15 0.00 35.67 3.58
1741 5159 7.231317 ACCAAATCTCTACATCACACAAATTGT 59.769 33.333 0.00 0.00 39.97 2.71
1854 5273 1.207089 TCTGTCGACCCTGCATAAAGG 59.793 52.381 14.12 0.00 37.05 3.11
1856 5275 1.899814 AGTCTGTCGACCCTGCATAAA 59.100 47.619 14.12 0.00 41.16 1.40
1869 5288 0.107459 GCTCCCATTCCCAGTCTGTC 60.107 60.000 0.00 0.00 0.00 3.51
1875 5294 1.318158 GCTTGTGCTCCCATTCCCAG 61.318 60.000 0.00 0.00 36.03 4.45
1887 5306 1.926510 GAACCACTGTTTTGCTTGTGC 59.073 47.619 0.00 0.00 33.97 4.57
1894 5313 3.788797 GCAACTCTCGAACCACTGTTTTG 60.789 47.826 0.00 0.00 33.97 2.44
1901 5320 0.880278 TGCAGCAACTCTCGAACCAC 60.880 55.000 0.00 0.00 0.00 4.16
1902 5321 0.601046 CTGCAGCAACTCTCGAACCA 60.601 55.000 0.00 0.00 0.00 3.67
1903 5322 0.319900 TCTGCAGCAACTCTCGAACC 60.320 55.000 9.47 0.00 0.00 3.62
1904 5323 0.787183 GTCTGCAGCAACTCTCGAAC 59.213 55.000 9.47 0.00 0.00 3.95
1905 5324 0.389025 TGTCTGCAGCAACTCTCGAA 59.611 50.000 9.47 0.00 0.00 3.71
1906 5325 0.038801 CTGTCTGCAGCAACTCTCGA 60.039 55.000 9.47 0.00 35.77 4.04
1907 5326 0.038801 TCTGTCTGCAGCAACTCTCG 60.039 55.000 9.47 0.00 42.29 4.04
1908 5327 1.712401 CTCTGTCTGCAGCAACTCTC 58.288 55.000 9.47 0.00 42.29 3.20
1909 5328 0.320596 GCTCTGTCTGCAGCAACTCT 60.321 55.000 9.47 0.00 42.29 3.24
1910 5329 0.602106 TGCTCTGTCTGCAGCAACTC 60.602 55.000 9.47 3.15 42.74 3.01
1911 5330 1.448924 TGCTCTGTCTGCAGCAACT 59.551 52.632 9.47 0.00 42.74 3.16
1912 5331 4.054085 TGCTCTGTCTGCAGCAAC 57.946 55.556 9.47 3.37 42.74 4.17
1914 5333 0.464193 TGTTTGCTCTGTCTGCAGCA 60.464 50.000 9.47 9.73 44.02 4.41
1915 5334 0.879765 ATGTTTGCTCTGTCTGCAGC 59.120 50.000 9.47 4.92 42.29 5.25
1916 5335 1.401148 GCATGTTTGCTCTGTCTGCAG 60.401 52.381 7.63 7.63 45.77 4.41
1917 5336 0.594602 GCATGTTTGCTCTGTCTGCA 59.405 50.000 0.00 0.00 45.77 4.41
1918 5337 3.396491 GCATGTTTGCTCTGTCTGC 57.604 52.632 0.00 0.00 45.77 4.26
1928 5347 3.125316 CTGTTGGAGTTTGGCATGTTTG 58.875 45.455 0.00 0.00 0.00 2.93
1949 5368 8.671921 TGAAATCTGAAATCAAATCACTAGCTC 58.328 33.333 0.00 0.00 0.00 4.09
2018 5437 2.486203 CACGCCCATTGTGCTAGTTTAA 59.514 45.455 0.00 0.00 0.00 1.52
2092 5514 1.066143 AGGACGCAAACATCTTCCGAT 60.066 47.619 0.00 0.00 0.00 4.18
2093 5515 0.320374 AGGACGCAAACATCTTCCGA 59.680 50.000 0.00 0.00 0.00 4.55
2094 5516 2.004583 TAGGACGCAAACATCTTCCG 57.995 50.000 0.00 0.00 0.00 4.30
2095 5517 3.309954 GTCATAGGACGCAAACATCTTCC 59.690 47.826 0.00 0.00 33.68 3.46
2096 5518 4.522297 GTCATAGGACGCAAACATCTTC 57.478 45.455 0.00 0.00 33.68 2.87
2108 5530 5.116882 GGAACCACATAACAGTCATAGGAC 58.883 45.833 0.00 0.00 44.66 3.85
2109 5531 4.780554 TGGAACCACATAACAGTCATAGGA 59.219 41.667 0.00 0.00 0.00 2.94
2110 5532 5.097742 TGGAACCACATAACAGTCATAGG 57.902 43.478 0.00 0.00 0.00 2.57
2111 5533 5.063438 CGTTGGAACCACATAACAGTCATAG 59.937 44.000 0.00 0.00 0.00 2.23
2112 5534 4.932799 CGTTGGAACCACATAACAGTCATA 59.067 41.667 0.00 0.00 0.00 2.15
2113 5535 3.751175 CGTTGGAACCACATAACAGTCAT 59.249 43.478 0.00 0.00 0.00 3.06
2114 5536 3.135225 CGTTGGAACCACATAACAGTCA 58.865 45.455 0.00 0.00 0.00 3.41
2115 5537 3.395639 TCGTTGGAACCACATAACAGTC 58.604 45.455 0.00 0.00 0.00 3.51
2116 5538 3.478857 TCGTTGGAACCACATAACAGT 57.521 42.857 0.00 0.00 0.00 3.55
2117 5539 5.872617 TCTAATCGTTGGAACCACATAACAG 59.127 40.000 0.00 0.00 0.00 3.16
2118 5540 5.795972 TCTAATCGTTGGAACCACATAACA 58.204 37.500 0.00 0.00 0.00 2.41
2119 5541 6.730960 TTCTAATCGTTGGAACCACATAAC 57.269 37.500 0.00 0.00 0.00 1.89
2120 5542 7.662258 TCTTTTCTAATCGTTGGAACCACATAA 59.338 33.333 0.00 0.00 29.37 1.90
2121 5543 7.162761 TCTTTTCTAATCGTTGGAACCACATA 58.837 34.615 0.00 0.00 29.37 2.29
2122 5544 6.001460 TCTTTTCTAATCGTTGGAACCACAT 58.999 36.000 0.00 0.00 29.37 3.21
2123 5545 5.369833 TCTTTTCTAATCGTTGGAACCACA 58.630 37.500 0.00 0.00 29.37 4.17
2124 5546 5.699458 TCTCTTTTCTAATCGTTGGAACCAC 59.301 40.000 0.00 0.00 29.37 4.16
2125 5547 5.860611 TCTCTTTTCTAATCGTTGGAACCA 58.139 37.500 0.00 0.00 29.37 3.67
2126 5548 6.204108 TGTTCTCTTTTCTAATCGTTGGAACC 59.796 38.462 0.00 0.00 29.37 3.62
2127 5549 7.186021 TGTTCTCTTTTCTAATCGTTGGAAC 57.814 36.000 0.00 0.00 29.37 3.62
2128 5550 7.713507 TCTTGTTCTCTTTTCTAATCGTTGGAA 59.286 33.333 0.00 0.00 0.00 3.53
2129 5551 7.214381 TCTTGTTCTCTTTTCTAATCGTTGGA 58.786 34.615 0.00 0.00 0.00 3.53
2130 5552 7.421530 TCTTGTTCTCTTTTCTAATCGTTGG 57.578 36.000 0.00 0.00 0.00 3.77
2137 5559 9.672673 CCCTCATATTCTTGTTCTCTTTTCTAA 57.327 33.333 0.00 0.00 0.00 2.10
2138 5560 7.770897 GCCCTCATATTCTTGTTCTCTTTTCTA 59.229 37.037 0.00 0.00 0.00 2.10
2139 5561 6.601217 GCCCTCATATTCTTGTTCTCTTTTCT 59.399 38.462 0.00 0.00 0.00 2.52
2140 5562 6.183360 GGCCCTCATATTCTTGTTCTCTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
2141 5563 5.654209 GGCCCTCATATTCTTGTTCTCTTTT 59.346 40.000 0.00 0.00 0.00 2.27
2142 5564 5.196695 GGCCCTCATATTCTTGTTCTCTTT 58.803 41.667 0.00 0.00 0.00 2.52
2143 5565 4.228210 TGGCCCTCATATTCTTGTTCTCTT 59.772 41.667 0.00 0.00 0.00 2.85
2144 5566 3.782523 TGGCCCTCATATTCTTGTTCTCT 59.217 43.478 0.00 0.00 0.00 3.10
2145 5567 4.156455 TGGCCCTCATATTCTTGTTCTC 57.844 45.455 0.00 0.00 0.00 2.87
2146 5568 4.591321 TTGGCCCTCATATTCTTGTTCT 57.409 40.909 0.00 0.00 0.00 3.01
2147 5569 5.859205 ATTTGGCCCTCATATTCTTGTTC 57.141 39.130 0.00 0.00 0.00 3.18
2148 5570 5.627503 GCAATTTGGCCCTCATATTCTTGTT 60.628 40.000 0.00 0.00 0.00 2.83
2149 5571 4.141869 GCAATTTGGCCCTCATATTCTTGT 60.142 41.667 0.00 0.00 0.00 3.16
2150 5572 4.141892 TGCAATTTGGCCCTCATATTCTTG 60.142 41.667 0.00 0.00 0.00 3.02
2151 5573 4.032310 TGCAATTTGGCCCTCATATTCTT 58.968 39.130 0.00 0.00 0.00 2.52
2152 5574 3.640029 CTGCAATTTGGCCCTCATATTCT 59.360 43.478 0.00 0.00 0.00 2.40
2153 5575 3.638160 TCTGCAATTTGGCCCTCATATTC 59.362 43.478 0.00 0.00 0.00 1.75
2154 5576 3.645434 TCTGCAATTTGGCCCTCATATT 58.355 40.909 0.00 0.00 0.00 1.28
2155 5577 3.317455 TCTGCAATTTGGCCCTCATAT 57.683 42.857 0.00 0.00 0.00 1.78
2156 5578 2.824689 TCTGCAATTTGGCCCTCATA 57.175 45.000 0.00 0.00 0.00 2.15
2157 5579 1.941377 TTCTGCAATTTGGCCCTCAT 58.059 45.000 0.00 0.00 0.00 2.90
2158 5580 1.551430 CATTCTGCAATTTGGCCCTCA 59.449 47.619 0.00 0.00 0.00 3.86
2159 5581 1.551883 ACATTCTGCAATTTGGCCCTC 59.448 47.619 0.00 0.00 0.00 4.30
2160 5582 1.276989 CACATTCTGCAATTTGGCCCT 59.723 47.619 0.00 0.00 0.00 5.19
2161 5583 1.275856 TCACATTCTGCAATTTGGCCC 59.724 47.619 0.00 0.00 0.00 5.80
2162 5584 2.613691 CTCACATTCTGCAATTTGGCC 58.386 47.619 0.00 0.00 0.00 5.36
2163 5585 2.613691 CCTCACATTCTGCAATTTGGC 58.386 47.619 0.00 0.00 0.00 4.52
2164 5586 2.613691 GCCTCACATTCTGCAATTTGG 58.386 47.619 0.00 0.00 0.00 3.28
2165 5587 2.256174 CGCCTCACATTCTGCAATTTG 58.744 47.619 0.00 0.00 0.00 2.32
2166 5588 1.888512 ACGCCTCACATTCTGCAATTT 59.111 42.857 0.00 0.00 0.00 1.82
2167 5589 1.538047 ACGCCTCACATTCTGCAATT 58.462 45.000 0.00 0.00 0.00 2.32
2168 5590 1.470098 GAACGCCTCACATTCTGCAAT 59.530 47.619 0.00 0.00 0.00 3.56
2169 5591 0.874390 GAACGCCTCACATTCTGCAA 59.126 50.000 0.00 0.00 0.00 4.08
2170 5592 1.291184 CGAACGCCTCACATTCTGCA 61.291 55.000 0.00 0.00 0.00 4.41
2171 5593 1.014044 TCGAACGCCTCACATTCTGC 61.014 55.000 0.00 0.00 0.00 4.26
2172 5594 0.994995 CTCGAACGCCTCACATTCTG 59.005 55.000 0.00 0.00 0.00 3.02
2173 5595 0.737715 GCTCGAACGCCTCACATTCT 60.738 55.000 0.00 0.00 0.00 2.40
2174 5596 1.014044 TGCTCGAACGCCTCACATTC 61.014 55.000 0.00 0.00 0.00 2.67
2175 5597 0.391661 ATGCTCGAACGCCTCACATT 60.392 50.000 0.00 0.00 0.00 2.71
2176 5598 0.807667 GATGCTCGAACGCCTCACAT 60.808 55.000 0.00 0.00 0.00 3.21
2177 5599 1.446099 GATGCTCGAACGCCTCACA 60.446 57.895 0.00 0.00 0.00 3.58
2178 5600 2.167861 GGATGCTCGAACGCCTCAC 61.168 63.158 4.74 0.00 0.00 3.51
2179 5601 2.166130 TTGGATGCTCGAACGCCTCA 62.166 55.000 4.74 0.00 0.00 3.86
2180 5602 1.019278 TTTGGATGCTCGAACGCCTC 61.019 55.000 0.00 0.00 0.00 4.70
2181 5603 1.003839 TTTGGATGCTCGAACGCCT 60.004 52.632 0.00 0.00 0.00 5.52
2182 5604 1.298859 ACTTTGGATGCTCGAACGCC 61.299 55.000 0.00 0.00 0.00 5.68
2183 5605 0.179215 CACTTTGGATGCTCGAACGC 60.179 55.000 0.00 0.00 0.00 4.84
2184 5606 1.126846 GTCACTTTGGATGCTCGAACG 59.873 52.381 0.00 0.00 0.00 3.95
2185 5607 1.464997 GGTCACTTTGGATGCTCGAAC 59.535 52.381 0.00 0.00 0.00 3.95
2186 5608 1.071542 TGGTCACTTTGGATGCTCGAA 59.928 47.619 0.00 0.00 0.00 3.71
2187 5609 0.684535 TGGTCACTTTGGATGCTCGA 59.315 50.000 0.00 0.00 0.00 4.04
2188 5610 1.742761 ATGGTCACTTTGGATGCTCG 58.257 50.000 0.00 0.00 0.00 5.03
2189 5611 3.084039 TCAATGGTCACTTTGGATGCTC 58.916 45.455 0.00 0.00 33.78 4.26
2190 5612 3.159213 TCAATGGTCACTTTGGATGCT 57.841 42.857 0.00 0.00 33.78 3.79
2191 5613 5.300034 TCATATCAATGGTCACTTTGGATGC 59.700 40.000 0.00 0.00 33.78 3.91
2192 5614 6.319405 TGTCATATCAATGGTCACTTTGGATG 59.681 38.462 0.00 0.00 33.78 3.51
2193 5615 6.425735 TGTCATATCAATGGTCACTTTGGAT 58.574 36.000 0.00 0.00 33.78 3.41
2194 5616 5.814481 TGTCATATCAATGGTCACTTTGGA 58.186 37.500 0.00 0.00 33.78 3.53
2195 5617 6.513806 TTGTCATATCAATGGTCACTTTGG 57.486 37.500 0.00 0.00 33.78 3.28
2196 5618 8.865978 CATTTTGTCATATCAATGGTCACTTTG 58.134 33.333 0.00 0.00 33.61 2.77
2197 5619 8.587608 ACATTTTGTCATATCAATGGTCACTTT 58.412 29.630 0.00 0.00 33.61 2.66
2198 5620 8.030692 CACATTTTGTCATATCAATGGTCACTT 58.969 33.333 0.00 0.00 33.61 3.16
2199 5621 7.363181 CCACATTTTGTCATATCAATGGTCACT 60.363 37.037 0.00 0.00 33.61 3.41
2200 5622 6.753279 CCACATTTTGTCATATCAATGGTCAC 59.247 38.462 0.00 0.00 33.61 3.67
2201 5623 6.436847 ACCACATTTTGTCATATCAATGGTCA 59.563 34.615 0.00 0.00 34.12 4.02
2202 5624 6.866480 ACCACATTTTGTCATATCAATGGTC 58.134 36.000 0.00 0.00 34.12 4.02
2203 5625 6.127366 GGACCACATTTTGTCATATCAATGGT 60.127 38.462 0.00 0.00 38.70 3.55
2204 5626 6.275335 GGACCACATTTTGTCATATCAATGG 58.725 40.000 0.00 0.00 32.95 3.16
2205 5627 5.972973 CGGACCACATTTTGTCATATCAATG 59.027 40.000 0.00 0.00 33.09 2.82
2206 5628 5.885352 TCGGACCACATTTTGTCATATCAAT 59.115 36.000 0.00 0.00 33.09 2.57
2207 5629 5.249420 TCGGACCACATTTTGTCATATCAA 58.751 37.500 0.00 0.00 33.09 2.57
2208 5630 4.837972 TCGGACCACATTTTGTCATATCA 58.162 39.130 0.00 0.00 33.09 2.15
2209 5631 5.811399 TTCGGACCACATTTTGTCATATC 57.189 39.130 0.00 0.00 33.09 1.63
2210 5632 6.563422 CAATTCGGACCACATTTTGTCATAT 58.437 36.000 0.00 0.00 33.09 1.78
2211 5633 5.621104 GCAATTCGGACCACATTTTGTCATA 60.621 40.000 0.00 0.00 33.09 2.15
2212 5634 4.808558 CAATTCGGACCACATTTTGTCAT 58.191 39.130 0.00 0.00 33.09 3.06
2213 5635 3.551863 GCAATTCGGACCACATTTTGTCA 60.552 43.478 0.00 0.00 33.09 3.58
2214 5636 2.986479 GCAATTCGGACCACATTTTGTC 59.014 45.455 0.00 0.00 0.00 3.18
2215 5637 2.627699 AGCAATTCGGACCACATTTTGT 59.372 40.909 0.00 0.00 0.00 2.83
2216 5638 3.302365 AGCAATTCGGACCACATTTTG 57.698 42.857 0.00 0.00 0.00 2.44
2217 5639 3.069443 ACAAGCAATTCGGACCACATTTT 59.931 39.130 0.00 0.00 0.00 1.82
2218 5640 2.627699 ACAAGCAATTCGGACCACATTT 59.372 40.909 0.00 0.00 0.00 2.32
2219 5641 2.030007 CACAAGCAATTCGGACCACATT 60.030 45.455 0.00 0.00 0.00 2.71
2220 5642 1.541147 CACAAGCAATTCGGACCACAT 59.459 47.619 0.00 0.00 0.00 3.21
2221 5643 0.950836 CACAAGCAATTCGGACCACA 59.049 50.000 0.00 0.00 0.00 4.17
2222 5644 1.069227 GTCACAAGCAATTCGGACCAC 60.069 52.381 0.00 0.00 0.00 4.16
2223 5645 1.234821 GTCACAAGCAATTCGGACCA 58.765 50.000 0.00 0.00 0.00 4.02
2224 5646 1.234821 TGTCACAAGCAATTCGGACC 58.765 50.000 0.00 0.00 0.00 4.46
2225 5647 3.559238 AATGTCACAAGCAATTCGGAC 57.441 42.857 0.00 0.00 0.00 4.79
2226 5648 5.697473 TTAAATGTCACAAGCAATTCGGA 57.303 34.783 0.00 0.00 0.00 4.55
2227 5649 5.164061 GCTTTAAATGTCACAAGCAATTCGG 60.164 40.000 0.00 0.00 41.16 4.30
2228 5650 5.441872 CGCTTTAAATGTCACAAGCAATTCG 60.442 40.000 0.00 0.00 41.51 3.34
2229 5651 5.402270 ACGCTTTAAATGTCACAAGCAATTC 59.598 36.000 0.00 0.00 41.51 2.17
2230 5652 5.175491 CACGCTTTAAATGTCACAAGCAATT 59.825 36.000 0.00 0.00 41.51 2.32
2231 5653 4.681025 CACGCTTTAAATGTCACAAGCAAT 59.319 37.500 0.00 0.00 41.51 3.56
2232 5654 4.041049 CACGCTTTAAATGTCACAAGCAA 58.959 39.130 0.00 0.00 41.51 3.91
2233 5655 3.313803 TCACGCTTTAAATGTCACAAGCA 59.686 39.130 0.00 0.00 41.51 3.91
2234 5656 3.884169 TCACGCTTTAAATGTCACAAGC 58.116 40.909 0.00 0.00 38.64 4.01
2235 5657 5.140177 GTCTCACGCTTTAAATGTCACAAG 58.860 41.667 0.00 0.00 0.00 3.16
2236 5658 4.318475 CGTCTCACGCTTTAAATGTCACAA 60.318 41.667 0.00 0.00 33.65 3.33
2237 5659 3.183574 CGTCTCACGCTTTAAATGTCACA 59.816 43.478 0.00 0.00 33.65 3.58
2238 5660 3.427528 TCGTCTCACGCTTTAAATGTCAC 59.572 43.478 0.00 0.00 42.21 3.67
2239 5661 3.427528 GTCGTCTCACGCTTTAAATGTCA 59.572 43.478 0.00 0.00 42.21 3.58
2240 5662 3.427528 TGTCGTCTCACGCTTTAAATGTC 59.572 43.478 0.00 0.00 42.21 3.06
2241 5663 3.386486 TGTCGTCTCACGCTTTAAATGT 58.614 40.909 0.00 0.00 42.21 2.71
2242 5664 4.584029 ATGTCGTCTCACGCTTTAAATG 57.416 40.909 0.00 0.00 42.21 2.32
2243 5665 5.178623 TGAAATGTCGTCTCACGCTTTAAAT 59.821 36.000 0.00 0.00 42.21 1.40
2244 5666 4.508492 TGAAATGTCGTCTCACGCTTTAAA 59.492 37.500 0.00 0.00 42.21 1.52
2245 5667 4.052608 TGAAATGTCGTCTCACGCTTTAA 58.947 39.130 0.00 0.00 42.21 1.52
2246 5668 3.644823 TGAAATGTCGTCTCACGCTTTA 58.355 40.909 0.00 0.00 42.21 1.85
2247 5669 2.479837 TGAAATGTCGTCTCACGCTTT 58.520 42.857 0.00 0.00 42.21 3.51
2248 5670 2.148916 TGAAATGTCGTCTCACGCTT 57.851 45.000 0.00 0.00 42.21 4.68
2249 5671 2.148916 TTGAAATGTCGTCTCACGCT 57.851 45.000 0.00 0.00 42.21 5.07
2250 5672 2.941891 TTTGAAATGTCGTCTCACGC 57.058 45.000 0.00 0.00 42.21 5.34
2251 5673 5.906838 TCAAAATTTGAAATGTCGTCTCACG 59.093 36.000 5.87 0.00 38.82 4.35
2252 5674 7.678194 TTCAAAATTTGAAATGTCGTCTCAC 57.322 32.000 17.69 0.00 45.94 3.51
2265 5687 4.450053 CCTTGCCCAGTTTCAAAATTTGA 58.550 39.130 4.03 4.03 38.04 2.69
2266 5688 4.816786 CCTTGCCCAGTTTCAAAATTTG 57.183 40.909 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.