Multiple sequence alignment - TraesCS1B01G365900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G365900 chr1B 100.000 3317 0 0 1 3317 597150438 597153754 0.000000e+00 6126.0
1 TraesCS1B01G365900 chr1B 93.415 410 26 1 4 413 463621578 463621170 1.020000e-169 606.0
2 TraesCS1B01G365900 chr5A 81.539 1533 164 44 1823 3289 25095790 25094311 0.000000e+00 1153.0
3 TraesCS1B01G365900 chr5A 94.502 291 12 4 947 1237 25096828 25096542 2.350000e-121 446.0
4 TraesCS1B01G365900 chr5A 92.386 197 12 3 1453 1647 25096267 25096072 9.060000e-71 278.0
5 TraesCS1B01G365900 chr5A 84.577 201 26 4 1425 1621 16648625 16648426 9.390000e-46 195.0
6 TraesCS1B01G365900 chr5A 84.080 201 27 4 1425 1621 16672386 16672187 4.370000e-44 189.0
7 TraesCS1B01G365900 chr5A 83.582 201 28 4 1425 1621 16660504 16660305 2.030000e-42 183.0
8 TraesCS1B01G365900 chr5A 83.582 201 28 4 1425 1621 16684165 16683966 2.030000e-42 183.0
9 TraesCS1B01G365900 chr5A 90.299 134 10 2 2133 2265 16502793 16502662 4.400000e-39 172.0
10 TraesCS1B01G365900 chr5A 83.237 173 24 4 1047 1217 515130044 515130213 1.590000e-33 154.0
11 TraesCS1B01G365900 chr5A 93.478 46 3 0 2305 2350 16502660 16502615 5.940000e-08 69.4
12 TraesCS1B01G365900 chr5B 90.821 828 57 10 414 1237 26952883 26952071 0.000000e+00 1090.0
13 TraesCS1B01G365900 chr5B 86.214 943 72 27 1821 2713 26951507 26950573 0.000000e+00 968.0
14 TraesCS1B01G365900 chr5B 92.294 571 36 5 1 566 26954413 26953846 0.000000e+00 804.0
15 TraesCS1B01G365900 chr5B 93.237 414 26 2 1 413 38188380 38187968 2.830000e-170 608.0
16 TraesCS1B01G365900 chr5B 92.995 414 27 2 1 414 663203262 663203673 1.320000e-168 603.0
17 TraesCS1B01G365900 chr5B 94.146 205 11 1 1424 1627 26951841 26951637 8.940000e-81 311.0
18 TraesCS1B01G365900 chr5B 78.571 154 14 7 1667 1801 26951640 26951487 2.120000e-12 84.2
19 TraesCS1B01G365900 chr5D 87.214 962 73 19 1823 2741 36004131 36003177 0.000000e+00 1050.0
20 TraesCS1B01G365900 chr5D 95.070 284 12 2 947 1229 36005031 36004749 2.350000e-121 446.0
21 TraesCS1B01G365900 chr5D 85.242 393 35 8 1422 1801 36004495 36004113 1.870000e-102 383.0
22 TraesCS1B01G365900 chr5D 84.865 185 18 7 1425 1600 22864349 22864166 9.460000e-41 178.0
23 TraesCS1B01G365900 chr5D 85.496 131 7 10 1020 1150 22864975 22864857 3.470000e-25 126.0
24 TraesCS1B01G365900 chr4B 93.674 411 25 1 1 411 374153719 374153310 6.080000e-172 614.0
25 TraesCS1B01G365900 chr4B 93.237 414 26 2 1 413 110463927 110463515 2.830000e-170 608.0
26 TraesCS1B01G365900 chr7B 93.220 413 27 1 1 413 245123681 245124092 1.020000e-169 606.0
27 TraesCS1B01G365900 chr6B 93.220 413 27 1 1 413 309870837 309871248 1.020000e-169 606.0
28 TraesCS1B01G365900 chr6B 85.354 198 28 1 1020 1217 248328115 248327919 1.560000e-48 204.0
29 TraesCS1B01G365900 chr2B 92.788 416 29 1 1 416 115250664 115250250 4.730000e-168 601.0
30 TraesCS1B01G365900 chr7A 88.158 76 9 0 693 768 438146577 438146502 1.270000e-14 91.6
31 TraesCS1B01G365900 chr4A 90.385 52 5 0 715 766 723743452 723743401 5.940000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G365900 chr1B 597150438 597153754 3316 False 6126.000000 6126 100.000000 1 3317 1 chr1B.!!$F1 3316
1 TraesCS1B01G365900 chr5A 25094311 25096828 2517 True 625.666667 1153 89.475667 947 3289 3 chr5A.!!$R6 2342
2 TraesCS1B01G365900 chr5B 26950573 26954413 3840 True 651.440000 1090 88.409200 1 2713 5 chr5B.!!$R2 2712
3 TraesCS1B01G365900 chr5D 36003177 36005031 1854 True 626.333333 1050 89.175333 947 2741 3 chr5D.!!$R2 1794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 2070 0.681733 AGTCACGACACAAGGCAGAT 59.318 50.0 0.0 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2627 4091 0.246086 CTCACACCTGGCTCAGAGTC 59.754 60.0 0.0 0.0 32.44 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.559153 GTTTGATAGCACACAAGGCATTT 58.441 39.130 0.00 0.00 0.00 2.32
44 45 1.522668 CACACAAGGCATTTCTCCGA 58.477 50.000 0.00 0.00 0.00 4.55
49 50 2.026822 ACAAGGCATTTCTCCGATGTCT 60.027 45.455 0.00 0.00 40.96 3.41
118 119 8.615878 TGAAGAAAGCAGTAGCAATAAAACTA 57.384 30.769 0.00 0.00 45.49 2.24
122 123 8.846211 AGAAAGCAGTAGCAATAAAACTAAACA 58.154 29.630 0.00 0.00 45.49 2.83
153 154 2.403252 AAGCTAACGGATGGGTCTTG 57.597 50.000 0.00 0.00 0.00 3.02
154 155 1.276622 AGCTAACGGATGGGTCTTGT 58.723 50.000 0.00 0.00 0.00 3.16
155 156 1.207329 AGCTAACGGATGGGTCTTGTC 59.793 52.381 0.00 0.00 0.00 3.18
156 157 1.207329 GCTAACGGATGGGTCTTGTCT 59.793 52.381 0.00 0.00 0.00 3.41
170 172 6.070021 TGGGTCTTGTCTATCACATCATTCTT 60.070 38.462 0.00 0.00 33.90 2.52
195 197 1.349357 TGATGTGACCCCGTTCATCAA 59.651 47.619 0.00 0.00 42.01 2.57
196 198 2.224646 TGATGTGACCCCGTTCATCAAA 60.225 45.455 0.00 0.00 42.01 2.69
210 212 5.393452 CGTTCATCAAATGACAACGCATATC 59.607 40.000 13.42 0.00 39.39 1.63
220 222 2.368548 ACAACGCATATCCATGGCTAGA 59.631 45.455 6.96 0.00 32.36 2.43
233 235 6.252995 TCCATGGCTAGAAAACTTAACCATT 58.747 36.000 6.96 0.00 34.26 3.16
279 281 1.480954 AGGCATACTAGGAACACGGTG 59.519 52.381 6.58 6.58 0.00 4.94
302 304 7.750458 GGTGTTTTGTCTATGTATTCACACATG 59.250 37.037 0.00 0.00 39.46 3.21
431 433 8.760980 TCCTTCAAAAATTATACGGGAATGAT 57.239 30.769 0.00 0.00 0.00 2.45
457 463 6.865834 ATTTCTGTAGACTTGAGGTGAGAT 57.134 37.500 0.00 0.00 0.00 2.75
465 471 4.220382 AGACTTGAGGTGAGATTGAGACTG 59.780 45.833 0.00 0.00 0.00 3.51
471 477 3.843027 AGGTGAGATTGAGACTGGTTGAT 59.157 43.478 0.00 0.00 0.00 2.57
494 500 4.072839 GGATCCTCTAAAATTAAGGCCCG 58.927 47.826 3.84 0.00 0.00 6.13
519 525 7.063780 CGCTTTGATTTGCAGGATTTTTAGAAT 59.936 33.333 0.00 0.00 0.00 2.40
520 526 8.173130 GCTTTGATTTGCAGGATTTTTAGAATG 58.827 33.333 0.00 0.00 0.00 2.67
555 561 5.505173 AGTACATGATTTAAGTGGCATGC 57.495 39.130 9.90 9.90 41.25 4.06
572 1693 4.713321 GGCATGCCCATTTCAATCCTATAT 59.287 41.667 27.24 0.00 0.00 0.86
573 1694 5.394883 GGCATGCCCATTTCAATCCTATATG 60.395 44.000 27.24 0.00 0.00 1.78
575 1696 6.097839 GCATGCCCATTTCAATCCTATATGAT 59.902 38.462 6.36 0.00 0.00 2.45
611 1732 4.433186 TGTTGTCACAGAAAAACAGTGG 57.567 40.909 0.00 0.00 36.79 4.00
612 1733 4.075682 TGTTGTCACAGAAAAACAGTGGA 58.924 39.130 0.00 0.00 36.79 4.02
654 1775 8.255206 TGAAATGGATCTTTGATTTCCAATGAG 58.745 33.333 0.00 0.00 42.53 2.90
688 1809 9.116067 CAAAACTCTTTTATATTATGGGACGGA 57.884 33.333 0.00 0.00 0.00 4.69
690 1811 7.850935 ACTCTTTTATATTATGGGACGGAGA 57.149 36.000 0.00 0.00 0.00 3.71
692 1813 7.509659 ACTCTTTTATATTATGGGACGGAGAGT 59.490 37.037 0.00 0.00 35.46 3.24
697 1818 3.377253 TTATGGGACGGAGAGTGTAGT 57.623 47.619 0.00 0.00 0.00 2.73
750 1872 9.726232 ATAGAATTCAATCATGTGAATCAAACG 57.274 29.630 8.44 0.00 45.42 3.60
751 1873 6.529125 AGAATTCAATCATGTGAATCAAACGC 59.471 34.615 8.44 0.00 45.42 4.84
752 1874 4.095410 TCAATCATGTGAATCAAACGCC 57.905 40.909 0.00 0.00 0.00 5.68
753 1875 3.119531 TCAATCATGTGAATCAAACGCCC 60.120 43.478 0.00 0.00 0.00 6.13
754 1876 1.902938 TCATGTGAATCAAACGCCCA 58.097 45.000 0.00 0.00 0.00 5.36
755 1877 2.234143 TCATGTGAATCAAACGCCCAA 58.766 42.857 0.00 0.00 0.00 4.12
756 1878 2.030363 TCATGTGAATCAAACGCCCAAC 60.030 45.455 0.00 0.00 0.00 3.77
826 1951 3.840666 AGAGGCTTACAGGATCTGTGAAA 59.159 43.478 10.46 0.00 45.01 2.69
833 1958 4.713792 ACAGGATCTGTGAAAGAGGTTT 57.286 40.909 0.00 0.00 43.63 3.27
871 1996 5.347093 TCGCGTAAACATCGGTTATTTTACA 59.653 36.000 5.77 0.00 35.82 2.41
872 1997 5.669430 CGCGTAAACATCGGTTATTTTACAG 59.331 40.000 0.00 0.00 35.82 2.74
873 1998 6.454054 CGCGTAAACATCGGTTATTTTACAGA 60.454 38.462 0.00 0.00 35.82 3.41
925 2050 4.941309 GGAAACGGGTGTGGCGGT 62.941 66.667 0.00 0.00 0.00 5.68
945 2070 0.681733 AGTCACGACACAAGGCAGAT 59.318 50.000 0.00 0.00 0.00 2.90
981 2106 0.810031 CGCAATTCCGGATCCGTTCT 60.810 55.000 31.22 13.11 37.81 3.01
985 2110 3.740141 GCAATTCCGGATCCGTTCTTCTA 60.740 47.826 31.22 9.53 37.81 2.10
1123 2248 1.153686 GGGTTCTACGACGCCTTCC 60.154 63.158 0.00 0.00 0.00 3.46
1218 2344 2.285743 GTGAGCCCTCCCTCCCTT 60.286 66.667 0.00 0.00 0.00 3.95
1256 2402 1.216710 CGTCCCTGCTCAGTTCCTC 59.783 63.158 0.00 0.00 0.00 3.71
1261 2407 1.515020 CTGCTCAGTTCCTCCTCGG 59.485 63.158 0.00 0.00 0.00 4.63
1264 2410 2.282958 TCAGTTCCTCCTCGGCGT 60.283 61.111 6.85 0.00 0.00 5.68
1275 2421 2.273557 TCCTCGGCGTTTGCTAATTAC 58.726 47.619 6.85 0.00 42.25 1.89
1277 2423 2.004017 CTCGGCGTTTGCTAATTACCA 58.996 47.619 6.85 0.00 42.25 3.25
1278 2424 2.612212 CTCGGCGTTTGCTAATTACCAT 59.388 45.455 6.85 0.00 42.25 3.55
1279 2425 2.353269 TCGGCGTTTGCTAATTACCATG 59.647 45.455 6.85 0.00 42.25 3.66
1280 2426 2.540769 CGGCGTTTGCTAATTACCATGG 60.541 50.000 11.19 11.19 42.25 3.66
1281 2427 2.459934 GCGTTTGCTAATTACCATGGC 58.540 47.619 13.04 0.00 38.39 4.40
1283 2429 3.490761 GCGTTTGCTAATTACCATGGCAT 60.491 43.478 13.04 0.57 38.39 4.40
1284 2430 4.043750 CGTTTGCTAATTACCATGGCATG 58.956 43.478 20.56 20.56 32.87 4.06
1292 2438 2.684294 CCATGGCATGGCACCCAA 60.684 61.111 31.96 0.45 44.70 4.12
1293 2439 2.727392 CCATGGCATGGCACCCAAG 61.727 63.158 31.96 11.71 44.70 3.61
1294 2440 3.078836 ATGGCATGGCACCCAAGC 61.079 61.111 25.84 3.04 46.03 4.01
1310 2457 3.322828 CCCAAGCATAATTTCCCCATCTG 59.677 47.826 0.00 0.00 0.00 2.90
1311 2458 3.962718 CCAAGCATAATTTCCCCATCTGT 59.037 43.478 0.00 0.00 0.00 3.41
1313 2460 5.452356 CCAAGCATAATTTCCCCATCTGTTC 60.452 44.000 0.00 0.00 0.00 3.18
1315 2462 3.960102 GCATAATTTCCCCATCTGTTCCA 59.040 43.478 0.00 0.00 0.00 3.53
1316 2463 4.202151 GCATAATTTCCCCATCTGTTCCAC 60.202 45.833 0.00 0.00 0.00 4.02
1324 2483 2.291800 CCCATCTGTTCCACCTCCATTT 60.292 50.000 0.00 0.00 0.00 2.32
1326 2485 3.424703 CATCTGTTCCACCTCCATTTGT 58.575 45.455 0.00 0.00 0.00 2.83
1332 2491 3.662759 TCCACCTCCATTTGTATTCCC 57.337 47.619 0.00 0.00 0.00 3.97
1336 2495 3.947834 CACCTCCATTTGTATTCCCTCAC 59.052 47.826 0.00 0.00 0.00 3.51
1351 2510 7.855784 ATTCCCTCACAAATTTACTTTTCCT 57.144 32.000 0.00 0.00 0.00 3.36
1353 2512 6.369629 TCCCTCACAAATTTACTTTTCCTCA 58.630 36.000 0.00 0.00 0.00 3.86
1354 2513 6.264518 TCCCTCACAAATTTACTTTTCCTCAC 59.735 38.462 0.00 0.00 0.00 3.51
1364 2523 4.689612 ACTTTTCCTCACTGTAGCTGAA 57.310 40.909 0.00 0.00 0.00 3.02
1365 2524 5.234466 ACTTTTCCTCACTGTAGCTGAAT 57.766 39.130 0.00 0.00 0.00 2.57
1370 2529 4.093743 TCCTCACTGTAGCTGAATAACCA 58.906 43.478 0.00 0.00 0.00 3.67
1371 2530 4.160439 TCCTCACTGTAGCTGAATAACCAG 59.840 45.833 0.00 0.00 37.23 4.00
1372 2531 4.081420 CCTCACTGTAGCTGAATAACCAGT 60.081 45.833 0.00 0.00 36.57 4.00
1374 2533 6.351033 CCTCACTGTAGCTGAATAACCAGTTA 60.351 42.308 0.00 0.00 36.57 2.24
1375 2534 6.631016 TCACTGTAGCTGAATAACCAGTTAG 58.369 40.000 0.00 0.00 36.57 2.34
1377 2536 4.766375 TGTAGCTGAATAACCAGTTAGCC 58.234 43.478 0.00 0.00 36.57 3.93
1378 2537 4.469945 TGTAGCTGAATAACCAGTTAGCCT 59.530 41.667 0.00 0.00 36.57 4.58
1379 2538 3.878778 AGCTGAATAACCAGTTAGCCTG 58.121 45.455 0.00 0.00 41.15 4.85
1380 2539 2.356069 GCTGAATAACCAGTTAGCCTGC 59.644 50.000 0.00 3.23 40.06 4.85
1381 2540 2.609459 CTGAATAACCAGTTAGCCTGCG 59.391 50.000 0.00 0.00 40.06 5.18
1382 2541 1.330829 GAATAACCAGTTAGCCTGCGC 59.669 52.381 0.00 0.00 40.06 6.09
1384 2543 0.251916 TAACCAGTTAGCCTGCGCAT 59.748 50.000 12.24 0.00 40.06 4.73
1386 2545 0.462047 ACCAGTTAGCCTGCGCATAC 60.462 55.000 12.24 6.04 40.06 2.39
1394 2554 1.709147 GCCTGCGCATACAGTTCCAG 61.709 60.000 12.24 0.00 35.83 3.86
1399 2559 0.940126 CGCATACAGTTCCAGCATCC 59.060 55.000 0.00 0.00 0.00 3.51
1400 2561 0.940126 GCATACAGTTCCAGCATCCG 59.060 55.000 0.00 0.00 0.00 4.18
1404 2565 2.496899 ACAGTTCCAGCATCCGATTT 57.503 45.000 0.00 0.00 0.00 2.17
1406 2567 3.950397 ACAGTTCCAGCATCCGATTTTA 58.050 40.909 0.00 0.00 0.00 1.52
1407 2568 3.941483 ACAGTTCCAGCATCCGATTTTAG 59.059 43.478 0.00 0.00 0.00 1.85
1409 2570 4.635765 CAGTTCCAGCATCCGATTTTAGAA 59.364 41.667 0.00 0.00 0.00 2.10
1410 2571 4.878397 AGTTCCAGCATCCGATTTTAGAAG 59.122 41.667 0.00 0.00 0.00 2.85
1411 2572 3.206150 TCCAGCATCCGATTTTAGAAGC 58.794 45.455 0.00 0.00 0.00 3.86
1412 2573 2.291741 CCAGCATCCGATTTTAGAAGCC 59.708 50.000 0.00 0.00 0.00 4.35
1413 2574 3.209410 CAGCATCCGATTTTAGAAGCCT 58.791 45.455 0.00 0.00 0.00 4.58
1414 2575 3.003068 CAGCATCCGATTTTAGAAGCCTG 59.997 47.826 0.00 0.00 0.00 4.85
1416 2577 3.002759 GCATCCGATTTTAGAAGCCTGTC 59.997 47.826 0.00 0.00 0.00 3.51
1418 2579 2.093128 TCCGATTTTAGAAGCCTGTCCC 60.093 50.000 0.00 0.00 0.00 4.46
1419 2580 2.092914 CCGATTTTAGAAGCCTGTCCCT 60.093 50.000 0.00 0.00 0.00 4.20
1420 2581 3.610911 CGATTTTAGAAGCCTGTCCCTT 58.389 45.455 0.00 0.00 0.00 3.95
1612 2838 1.347707 TCGGATGTGAGTGGCTTTCTT 59.652 47.619 0.00 0.00 0.00 2.52
1637 2863 6.756299 CCAAATTTAATTGGGTGGGAAATG 57.244 37.500 2.96 0.00 45.03 2.32
1638 2864 6.479884 CCAAATTTAATTGGGTGGGAAATGA 58.520 36.000 2.96 0.00 45.03 2.57
1639 2865 6.944862 CCAAATTTAATTGGGTGGGAAATGAA 59.055 34.615 2.96 0.00 45.03 2.57
1640 2866 7.449704 CCAAATTTAATTGGGTGGGAAATGAAA 59.550 33.333 2.96 0.00 45.03 2.69
1650 2876 5.278604 GGTGGGAAATGAAATAATACACGC 58.721 41.667 0.00 0.00 0.00 5.34
1656 2882 4.545823 ATGAAATAATACACGCCGTTGG 57.454 40.909 0.00 0.00 0.00 3.77
1660 2886 2.452295 TAATACACGCCGTTGGTTCA 57.548 45.000 0.00 0.00 0.00 3.18
1663 2889 1.009903 TACACGCCGTTGGTTCATCG 61.010 55.000 0.00 0.00 0.00 3.84
1673 3061 0.037447 TGGTTCATCGGCATTGGTCA 59.963 50.000 0.00 0.00 0.00 4.02
1689 3077 2.362397 TGGTCACTTAGCTCCATCGATC 59.638 50.000 0.00 0.00 0.00 3.69
1713 3106 5.943416 CCACATGGGATGTTTTCTTGTACTA 59.057 40.000 0.00 0.00 42.70 1.82
1763 3173 2.879103 ACCACATGGAGTTACCCAAG 57.121 50.000 4.53 0.00 40.04 3.61
1802 3212 9.921637 TTTACAGTGAAATGAACTCAAAGTTTT 57.078 25.926 0.00 0.00 38.80 2.43
1803 3213 9.921637 TTACAGTGAAATGAACTCAAAGTTTTT 57.078 25.926 0.00 0.00 38.80 1.94
1824 3234 4.910458 TTTTTGTTTTTGAGGGGGTGAA 57.090 36.364 0.00 0.00 0.00 3.18
1825 3235 4.910458 TTTTGTTTTTGAGGGGGTGAAA 57.090 36.364 0.00 0.00 0.00 2.69
1826 3236 5.443230 TTTTGTTTTTGAGGGGGTGAAAT 57.557 34.783 0.00 0.00 0.00 2.17
1827 3237 4.414337 TTGTTTTTGAGGGGGTGAAATG 57.586 40.909 0.00 0.00 0.00 2.32
1995 3413 6.677411 GCGTATCAAGATTCGTTTAGTTTGTC 59.323 38.462 10.09 0.00 34.69 3.18
2023 3441 9.793252 ATTTTGTTAATAATGCTCTAGTGCTTG 57.207 29.630 17.08 0.00 0.00 4.01
2033 3451 2.481952 CTCTAGTGCTTGACCAAGTTGC 59.518 50.000 10.96 0.00 40.45 4.17
2118 3538 2.285834 GCTGTTGGAATATCGTGCTTCG 60.286 50.000 0.00 0.00 41.41 3.79
2329 3752 0.179018 ACTGTGAAGGTGTCCTTGCC 60.179 55.000 5.73 0.00 44.82 4.52
2334 3757 0.954452 GAAGGTGTCCTTGCCTTGTG 59.046 55.000 5.73 0.00 44.82 3.33
2372 3799 4.935352 TTGCTCTTGTTTACTTGGCAAT 57.065 36.364 0.00 0.00 34.09 3.56
2374 3801 4.144297 TGCTCTTGTTTACTTGGCAATCT 58.856 39.130 0.00 0.00 0.00 2.40
2407 3834 5.483231 TGGAATAATGTTGCCTTGAAATGGA 59.517 36.000 0.00 0.00 31.60 3.41
2444 3871 4.081972 ACTTCAGGAGTGTGCTACATACTG 60.082 45.833 1.48 1.77 36.02 2.74
2447 3874 2.768527 AGGAGTGTGCTACATACTGCAT 59.231 45.455 15.95 1.89 43.73 3.96
2449 3876 4.405680 AGGAGTGTGCTACATACTGCATTA 59.594 41.667 15.95 0.00 43.73 1.90
2450 3877 4.508124 GGAGTGTGCTACATACTGCATTAC 59.492 45.833 10.31 0.00 41.74 1.89
2451 3878 5.084818 AGTGTGCTACATACTGCATTACA 57.915 39.130 0.00 0.00 41.45 2.41
2452 3879 5.487433 AGTGTGCTACATACTGCATTACAA 58.513 37.500 0.00 0.00 41.45 2.41
2453 3880 5.582269 AGTGTGCTACATACTGCATTACAAG 59.418 40.000 0.00 0.00 41.45 3.16
2466 3893 3.514645 CATTACAAGGACCTTTGCATGC 58.485 45.455 11.82 11.82 0.00 4.06
2469 3896 1.615392 ACAAGGACCTTTGCATGCTTC 59.385 47.619 20.33 7.20 0.00 3.86
2473 3900 2.232941 AGGACCTTTGCATGCTTCATTG 59.767 45.455 20.33 5.18 0.00 2.82
2487 3914 6.330004 TGCTTCATTGCAGAGTTGAAATAA 57.670 33.333 0.00 0.00 38.12 1.40
2563 4004 2.303022 TCTGACTACCAAAGGCTGAAGG 59.697 50.000 0.00 0.00 38.18 3.46
2567 4008 1.815003 CTACCAAAGGCTGAAGGCAAG 59.185 52.381 6.65 0.00 44.01 4.01
2568 4009 0.185901 ACCAAAGGCTGAAGGCAAGA 59.814 50.000 6.65 0.00 44.01 3.02
2569 4010 1.203100 ACCAAAGGCTGAAGGCAAGAT 60.203 47.619 6.65 0.00 44.01 2.40
2570 4011 2.041620 ACCAAAGGCTGAAGGCAAGATA 59.958 45.455 6.65 0.00 44.01 1.98
2571 4012 2.424956 CCAAAGGCTGAAGGCAAGATAC 59.575 50.000 6.65 0.00 44.01 2.24
2572 4013 2.424956 CAAAGGCTGAAGGCAAGATACC 59.575 50.000 6.65 0.00 44.01 2.73
2573 4014 1.589414 AGGCTGAAGGCAAGATACCT 58.411 50.000 6.65 0.00 44.01 3.08
2575 4016 1.475930 GGCTGAAGGCAAGATACCTCC 60.476 57.143 0.00 0.00 44.01 4.30
2577 4018 2.744494 GCTGAAGGCAAGATACCTCCAG 60.744 54.545 0.00 0.00 41.35 3.86
2593 4035 2.039613 CTCCAGGGATCAAGGCTAATCC 59.960 54.545 16.74 16.74 40.69 3.01
2600 4044 6.550854 CAGGGATCAAGGCTAATCCATTTAAA 59.449 38.462 23.09 0.00 42.78 1.52
2652 4117 1.618837 TGAGCCAGGTGTGAGTTCTAC 59.381 52.381 0.00 0.00 0.00 2.59
2653 4118 1.618837 GAGCCAGGTGTGAGTTCTACA 59.381 52.381 0.00 0.00 0.00 2.74
2655 4120 2.639839 AGCCAGGTGTGAGTTCTACAAT 59.360 45.455 0.00 0.00 0.00 2.71
2677 4142 3.845781 TTCTGATGTCCTAAGGCATCC 57.154 47.619 14.58 2.06 40.37 3.51
2680 4145 3.135348 TCTGATGTCCTAAGGCATCCTTG 59.865 47.826 14.58 7.62 44.44 3.61
2686 4151 3.440522 GTCCTAAGGCATCCTTGTCAAAC 59.559 47.826 8.29 0.00 44.44 2.93
2687 4152 3.330701 TCCTAAGGCATCCTTGTCAAACT 59.669 43.478 8.29 0.00 44.44 2.66
2692 4157 3.084039 GGCATCCTTGTCAAACTGATGA 58.916 45.455 17.30 0.00 35.89 2.92
2700 4165 5.065731 CCTTGTCAAACTGATGATTCCTAGC 59.934 44.000 0.00 0.00 0.00 3.42
2713 4178 8.039538 TGATGATTCCTAGCATATCTGACATTC 58.960 37.037 0.00 0.00 28.70 2.67
2714 4179 7.307131 TGATTCCTAGCATATCTGACATTCA 57.693 36.000 0.00 0.00 0.00 2.57
2716 4181 7.658982 TGATTCCTAGCATATCTGACATTCAAC 59.341 37.037 0.00 0.00 0.00 3.18
2717 4182 6.737720 TCCTAGCATATCTGACATTCAACT 57.262 37.500 0.00 0.00 0.00 3.16
2718 4183 7.839680 TCCTAGCATATCTGACATTCAACTA 57.160 36.000 0.00 0.00 0.00 2.24
2722 4187 9.190858 CTAGCATATCTGACATTCAACTACTTC 57.809 37.037 0.00 0.00 0.00 3.01
2724 4189 6.074088 GCATATCTGACATTCAACTACTTCCG 60.074 42.308 0.00 0.00 0.00 4.30
2725 4190 4.866508 TCTGACATTCAACTACTTCCGT 57.133 40.909 0.00 0.00 0.00 4.69
2732 4197 4.411256 TTCAACTACTTCCGTTTCCACT 57.589 40.909 0.00 0.00 0.00 4.00
2735 4200 4.124238 CAACTACTTCCGTTTCCACTTGA 58.876 43.478 0.00 0.00 0.00 3.02
2741 4206 4.275936 ACTTCCGTTTCCACTTGAAATCTG 59.724 41.667 0.00 0.00 44.44 2.90
2742 4207 3.146066 TCCGTTTCCACTTGAAATCTGG 58.854 45.455 0.00 0.00 44.44 3.86
2743 4208 2.884639 CCGTTTCCACTTGAAATCTGGT 59.115 45.455 0.00 0.00 44.44 4.00
2744 4209 3.317993 CCGTTTCCACTTGAAATCTGGTT 59.682 43.478 0.00 0.00 44.44 3.67
2745 4210 4.517453 CCGTTTCCACTTGAAATCTGGTTA 59.483 41.667 0.00 0.00 44.44 2.85
2746 4211 5.183140 CCGTTTCCACTTGAAATCTGGTTAT 59.817 40.000 0.00 0.00 44.44 1.89
2747 4212 6.086222 CGTTTCCACTTGAAATCTGGTTATG 58.914 40.000 0.00 0.00 44.44 1.90
2748 4213 5.643379 TTCCACTTGAAATCTGGTTATGC 57.357 39.130 0.00 0.00 0.00 3.14
2752 4233 4.403432 CACTTGAAATCTGGTTATGCCCAT 59.597 41.667 0.00 0.00 36.04 4.00
2776 4257 4.336433 CAGAAGTCTTTGGTCTTCAGCAAA 59.664 41.667 7.48 0.00 45.60 3.68
2782 4263 6.547510 AGTCTTTGGTCTTCAGCAAAAGTTAT 59.452 34.615 1.44 0.00 46.68 1.89
2785 4266 5.356882 TGGTCTTCAGCAAAAGTTATTCG 57.643 39.130 0.00 0.00 0.00 3.34
2795 4276 6.296026 AGCAAAAGTTATTCGGGCTGATATA 58.704 36.000 0.00 0.00 0.00 0.86
2802 4283 8.948631 AGTTATTCGGGCTGATATATGTTATG 57.051 34.615 0.00 0.00 0.00 1.90
2809 4290 7.342026 TCGGGCTGATATATGTTATGTGTAGAT 59.658 37.037 0.00 0.00 0.00 1.98
2827 4308 8.367911 TGTGTAGATTATCAAACAACTCTCTGT 58.632 33.333 2.70 0.00 0.00 3.41
2843 4324 3.942115 TCTCTGTTATCACTGTCCTCTCG 59.058 47.826 0.00 0.00 0.00 4.04
2853 4334 1.000283 CTGTCCTCTCGCTGACTTGTT 60.000 52.381 0.00 0.00 32.67 2.83
2859 4340 3.583806 CTCTCGCTGACTTGTTCTTCAT 58.416 45.455 0.00 0.00 0.00 2.57
2877 4358 9.171877 GTTCTTCATCTGACCTCTTATTTCAAT 57.828 33.333 0.00 0.00 0.00 2.57
2881 4362 9.690913 TTCATCTGACCTCTTATTTCAATCAAT 57.309 29.630 0.00 0.00 0.00 2.57
2889 4370 9.853177 ACCTCTTATTTCAATCAATACCTAAGG 57.147 33.333 0.00 0.00 0.00 2.69
2908 4389 7.176690 ACCTAAGGTCATTAAAATGGTGAACAG 59.823 37.037 3.00 0.00 37.03 3.16
2909 4390 5.982890 AGGTCATTAAAATGGTGAACAGG 57.017 39.130 3.00 0.00 37.03 4.00
2912 4393 5.105756 GGTCATTAAAATGGTGAACAGGGAG 60.106 44.000 3.00 0.00 37.03 4.30
2914 4395 1.632589 AAAATGGTGAACAGGGAGCC 58.367 50.000 0.00 0.00 0.00 4.70
2915 4396 0.251787 AAATGGTGAACAGGGAGCCC 60.252 55.000 0.00 0.00 0.00 5.19
2924 4412 5.163131 GGTGAACAGGGAGCCCTTATAATTA 60.163 44.000 5.03 0.00 45.70 1.40
2927 4415 6.562608 TGAACAGGGAGCCCTTATAATTATCT 59.437 38.462 5.03 0.00 45.70 1.98
2933 4421 9.183824 AGGGAGCCCTTATAATTATCTAAAAGT 57.816 33.333 1.14 0.00 45.70 2.66
2962 4450 7.603963 TTCAGCAGAAATTATTGTACGCTAA 57.396 32.000 0.00 0.00 0.00 3.09
2964 4452 7.684670 TCAGCAGAAATTATTGTACGCTAAAG 58.315 34.615 0.00 0.00 0.00 1.85
2965 4453 7.547722 TCAGCAGAAATTATTGTACGCTAAAGA 59.452 33.333 0.00 0.00 0.00 2.52
2966 4454 7.636359 CAGCAGAAATTATTGTACGCTAAAGAC 59.364 37.037 0.00 0.00 0.00 3.01
2978 4466 5.091261 ACGCTAAAGACAGATCTTCCATT 57.909 39.130 0.00 0.00 44.82 3.16
2983 4471 6.545298 GCTAAAGACAGATCTTCCATTTGGAT 59.455 38.462 0.00 0.00 44.82 3.41
3010 4498 2.768253 TACCATGGCTGTCTCTGTTG 57.232 50.000 13.04 0.00 0.00 3.33
3016 4504 0.972883 GGCTGTCTCTGTTGTCTCCT 59.027 55.000 0.00 0.00 0.00 3.69
3017 4505 2.171840 GGCTGTCTCTGTTGTCTCCTA 58.828 52.381 0.00 0.00 0.00 2.94
3018 4506 2.165437 GGCTGTCTCTGTTGTCTCCTAG 59.835 54.545 0.00 0.00 0.00 3.02
3044 4532 1.261238 GGTGACAGGGCTAGCAGAGT 61.261 60.000 18.24 10.94 0.00 3.24
3046 4534 1.825474 GTGACAGGGCTAGCAGAGTTA 59.175 52.381 18.24 5.10 0.00 2.24
3048 4536 2.695666 TGACAGGGCTAGCAGAGTTATC 59.304 50.000 18.24 4.95 0.00 1.75
3052 4540 3.255642 CAGGGCTAGCAGAGTTATCTCTC 59.744 52.174 18.24 0.00 46.84 3.20
3053 4541 3.140144 AGGGCTAGCAGAGTTATCTCTCT 59.860 47.826 18.24 4.71 46.84 3.10
3054 4542 3.895041 GGGCTAGCAGAGTTATCTCTCTT 59.105 47.826 18.24 0.00 46.84 2.85
3055 4543 4.261994 GGGCTAGCAGAGTTATCTCTCTTG 60.262 50.000 18.24 4.58 46.84 3.02
3056 4544 4.340950 GGCTAGCAGAGTTATCTCTCTTGT 59.659 45.833 18.24 0.00 46.84 3.16
3057 4545 5.163457 GGCTAGCAGAGTTATCTCTCTTGTT 60.163 44.000 18.24 0.00 46.84 2.83
3058 4546 6.039941 GGCTAGCAGAGTTATCTCTCTTGTTA 59.960 42.308 18.24 0.00 46.84 2.41
3059 4547 7.255801 GGCTAGCAGAGTTATCTCTCTTGTTAT 60.256 40.741 18.24 0.00 46.84 1.89
3060 4548 7.807907 GCTAGCAGAGTTATCTCTCTTGTTATC 59.192 40.741 10.63 0.00 46.84 1.75
3061 4549 6.734137 AGCAGAGTTATCTCTCTTGTTATCG 58.266 40.000 0.04 0.00 46.84 2.92
3062 4550 5.918011 GCAGAGTTATCTCTCTTGTTATCGG 59.082 44.000 0.04 0.00 46.84 4.18
3063 4551 5.918011 CAGAGTTATCTCTCTTGTTATCGGC 59.082 44.000 0.04 0.00 46.84 5.54
3064 4552 5.010213 AGAGTTATCTCTCTTGTTATCGGCC 59.990 44.000 0.00 0.00 46.84 6.13
3065 4553 4.649674 AGTTATCTCTCTTGTTATCGGCCA 59.350 41.667 2.24 0.00 0.00 5.36
3066 4554 5.305644 AGTTATCTCTCTTGTTATCGGCCAT 59.694 40.000 2.24 0.00 0.00 4.40
3067 4555 6.493802 AGTTATCTCTCTTGTTATCGGCCATA 59.506 38.462 2.24 0.00 0.00 2.74
3068 4556 4.585955 TCTCTCTTGTTATCGGCCATAC 57.414 45.455 2.24 0.00 0.00 2.39
3069 4557 4.215908 TCTCTCTTGTTATCGGCCATACT 58.784 43.478 2.24 0.00 0.00 2.12
3070 4558 5.382616 TCTCTCTTGTTATCGGCCATACTA 58.617 41.667 2.24 0.00 0.00 1.82
3071 4559 5.241064 TCTCTCTTGTTATCGGCCATACTAC 59.759 44.000 2.24 0.00 0.00 2.73
3072 4560 4.891168 TCTCTTGTTATCGGCCATACTACA 59.109 41.667 2.24 0.00 0.00 2.74
3073 4561 5.009710 TCTCTTGTTATCGGCCATACTACAG 59.990 44.000 2.24 0.00 0.00 2.74
3074 4562 4.038763 TCTTGTTATCGGCCATACTACAGG 59.961 45.833 2.24 0.61 0.00 4.00
3075 4563 2.631062 TGTTATCGGCCATACTACAGGG 59.369 50.000 2.24 0.00 0.00 4.45
3076 4564 2.631545 GTTATCGGCCATACTACAGGGT 59.368 50.000 2.24 0.00 0.00 4.34
3077 4565 1.048601 ATCGGCCATACTACAGGGTG 58.951 55.000 2.24 0.00 0.00 4.61
3078 4566 0.032912 TCGGCCATACTACAGGGTGA 60.033 55.000 2.24 0.00 0.00 4.02
3079 4567 0.104304 CGGCCATACTACAGGGTGAC 59.896 60.000 2.24 0.00 0.00 3.67
3080 4568 1.497161 GGCCATACTACAGGGTGACT 58.503 55.000 0.00 0.00 0.00 3.41
3102 4590 1.685224 CACCCAAGCCAAGCTAGGA 59.315 57.895 11.41 0.00 38.25 2.94
3106 4594 1.396653 CCAAGCCAAGCTAGGAATGG 58.603 55.000 0.00 0.00 38.25 3.16
3108 4596 1.747355 CAAGCCAAGCTAGGAATGGTG 59.253 52.381 3.40 0.00 38.25 4.17
3110 4598 0.394899 GCCAAGCTAGGAATGGTGCT 60.395 55.000 3.40 0.00 36.57 4.40
3111 4599 1.673168 CCAAGCTAGGAATGGTGCTC 58.327 55.000 0.00 0.00 34.38 4.26
3112 4600 1.211457 CCAAGCTAGGAATGGTGCTCT 59.789 52.381 0.00 0.00 34.38 4.09
3118 4606 5.090139 AGCTAGGAATGGTGCTCTATATGT 58.910 41.667 0.00 0.00 0.00 2.29
3131 4619 9.277783 GGTGCTCTATATGTTAATCAAGATTGT 57.722 33.333 5.59 0.00 32.50 2.71
3144 4632 9.653287 TTAATCAAGATTGTAACTGTAGTGGAG 57.347 33.333 5.59 0.00 32.50 3.86
3148 4636 4.712337 AGATTGTAACTGTAGTGGAGGAGG 59.288 45.833 0.00 0.00 0.00 4.30
3157 4645 2.209809 TGGAGGAGGCCAAAGGGA 59.790 61.111 5.01 0.00 34.31 4.20
3176 4664 2.419297 GGAGGCAGATCACCAACTACAG 60.419 54.545 7.47 0.00 0.00 2.74
3189 4677 0.687354 ACTACAGCACCTTGGAGTGG 59.313 55.000 0.00 0.00 40.73 4.00
3212 4700 3.372897 TCTCAGAGCTCATCCACAGATT 58.627 45.455 17.77 0.00 0.00 2.40
3221 4709 4.684214 GCTCATCCACAGATTGTACCATGA 60.684 45.833 0.00 0.00 0.00 3.07
3224 4712 4.422073 TCCACAGATTGTACCATGATCC 57.578 45.455 0.00 0.00 0.00 3.36
3228 4716 5.760253 CCACAGATTGTACCATGATCCTTAC 59.240 44.000 0.00 0.00 0.00 2.34
3229 4717 5.760253 CACAGATTGTACCATGATCCTTACC 59.240 44.000 0.00 0.00 0.00 2.85
3235 4723 1.771255 ACCATGATCCTTACCTGCTCC 59.229 52.381 0.00 0.00 0.00 4.70
3239 4727 2.050144 TGATCCTTACCTGCTCCATCC 58.950 52.381 0.00 0.00 0.00 3.51
3240 4728 2.334023 GATCCTTACCTGCTCCATCCT 58.666 52.381 0.00 0.00 0.00 3.24
3241 4729 1.500474 TCCTTACCTGCTCCATCCTG 58.500 55.000 0.00 0.00 0.00 3.86
3242 4730 0.471617 CCTTACCTGCTCCATCCTGG 59.528 60.000 0.00 0.00 39.43 4.45
3243 4731 1.500474 CTTACCTGCTCCATCCTGGA 58.500 55.000 0.00 0.00 45.98 3.86
3256 4744 5.192927 TCCATCCTGGATGTATCAAACAAC 58.807 41.667 29.59 0.00 42.67 3.32
3259 4747 5.497464 TCCTGGATGTATCAAACAACAGA 57.503 39.130 12.13 0.00 44.04 3.41
3266 4754 7.128331 GGATGTATCAAACAACAGATCAATCG 58.872 38.462 0.00 0.00 42.70 3.34
3274 4762 4.836825 ACAACAGATCAATCGAGTCCATT 58.163 39.130 0.00 0.00 0.00 3.16
3276 4764 3.801698 ACAGATCAATCGAGTCCATTGG 58.198 45.455 10.14 0.00 32.86 3.16
3279 4767 3.198635 AGATCAATCGAGTCCATTGGTGT 59.801 43.478 10.14 0.00 32.86 4.16
3289 4777 4.267536 AGTCCATTGGTGTTCATGATGAG 58.732 43.478 1.86 0.00 0.00 2.90
3290 4778 3.379372 GTCCATTGGTGTTCATGATGAGG 59.621 47.826 1.86 0.00 0.00 3.86
3291 4779 3.266513 TCCATTGGTGTTCATGATGAGGA 59.733 43.478 1.86 0.00 0.00 3.71
3292 4780 4.079615 TCCATTGGTGTTCATGATGAGGAT 60.080 41.667 1.86 0.00 0.00 3.24
3293 4781 4.037565 CCATTGGTGTTCATGATGAGGATG 59.962 45.833 0.00 0.00 0.00 3.51
3294 4782 4.573021 TTGGTGTTCATGATGAGGATGA 57.427 40.909 0.00 0.00 0.00 2.92
3295 4783 3.877559 TGGTGTTCATGATGAGGATGAC 58.122 45.455 0.00 0.00 29.39 3.06
3296 4784 3.263937 TGGTGTTCATGATGAGGATGACA 59.736 43.478 0.00 0.00 29.39 3.58
3297 4785 4.080186 TGGTGTTCATGATGAGGATGACAT 60.080 41.667 0.00 0.00 29.39 3.06
3298 4786 4.514441 GGTGTTCATGATGAGGATGACATC 59.486 45.833 6.91 6.91 29.39 3.06
3299 4787 5.121105 GTGTTCATGATGAGGATGACATCA 58.879 41.667 17.08 11.91 40.99 3.07
3300 4788 5.587443 GTGTTCATGATGAGGATGACATCAA 59.413 40.000 17.08 2.77 40.16 2.57
3301 4789 5.587443 TGTTCATGATGAGGATGACATCAAC 59.413 40.000 17.08 10.25 40.16 3.18
3302 4790 5.362105 TCATGATGAGGATGACATCAACA 57.638 39.130 17.08 15.00 41.90 3.33
3303 4791 5.747342 TCATGATGAGGATGACATCAACAA 58.253 37.500 17.08 3.54 41.28 2.83
3304 4792 5.587443 TCATGATGAGGATGACATCAACAAC 59.413 40.000 17.08 13.73 41.28 3.32
3305 4793 4.909001 TGATGAGGATGACATCAACAACA 58.091 39.130 17.08 15.73 40.16 3.33
3306 4794 5.315348 TGATGAGGATGACATCAACAACAA 58.685 37.500 17.08 4.42 40.16 2.83
3307 4795 5.413523 TGATGAGGATGACATCAACAACAAG 59.586 40.000 17.08 0.00 40.16 3.16
3308 4796 4.074259 TGAGGATGACATCAACAACAAGG 58.926 43.478 17.08 0.00 33.86 3.61
3309 4797 4.074970 GAGGATGACATCAACAACAAGGT 58.925 43.478 17.08 0.00 0.00 3.50
3310 4798 3.822735 AGGATGACATCAACAACAAGGTG 59.177 43.478 17.08 0.00 35.78 4.00
3311 4799 3.568538 GATGACATCAACAACAAGGTGC 58.431 45.455 10.67 0.00 33.90 5.01
3312 4800 1.680735 TGACATCAACAACAAGGTGCC 59.319 47.619 0.00 0.00 33.90 5.01
3313 4801 1.680735 GACATCAACAACAAGGTGCCA 59.319 47.619 0.00 0.00 33.90 4.92
3314 4802 2.100584 GACATCAACAACAAGGTGCCAA 59.899 45.455 0.00 0.00 33.90 4.52
3315 4803 2.159114 ACATCAACAACAAGGTGCCAAC 60.159 45.455 0.00 0.00 33.90 3.77
3316 4804 1.550327 TCAACAACAAGGTGCCAACA 58.450 45.000 0.00 0.00 33.90 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.001838 GTGTGCTATCAAACGTCACAACA 59.998 43.478 5.66 0.00 39.07 3.33
44 45 4.164796 TGAGATTATGCAACTCCCAGACAT 59.835 41.667 0.00 0.00 0.00 3.06
49 50 5.366477 TGACTATGAGATTATGCAACTCCCA 59.634 40.000 0.00 0.00 0.00 4.37
118 119 8.952278 TCCGTTAGCTTAACATAATGATTGTTT 58.048 29.630 0.00 0.00 38.26 2.83
122 123 7.174946 CCCATCCGTTAGCTTAACATAATGATT 59.825 37.037 0.00 0.00 38.57 2.57
132 133 3.262405 ACAAGACCCATCCGTTAGCTTAA 59.738 43.478 0.00 0.00 0.00 1.85
170 172 2.835156 TGAACGGGGTCACATCATTAGA 59.165 45.455 0.00 0.00 0.00 2.10
183 185 2.414029 CGTTGTCATTTGATGAACGGGG 60.414 50.000 14.93 0.00 41.69 5.73
195 197 2.294233 GCCATGGATATGCGTTGTCATT 59.706 45.455 18.40 0.00 32.79 2.57
196 198 1.881973 GCCATGGATATGCGTTGTCAT 59.118 47.619 18.40 0.00 32.79 3.06
210 212 6.530019 AATGGTTAAGTTTTCTAGCCATGG 57.470 37.500 7.63 7.63 36.60 3.66
233 235 9.190317 TCTACTAGACTAGCTCATTGATCAAAA 57.810 33.333 13.09 2.97 0.00 2.44
243 245 4.715534 ATGCCTCTACTAGACTAGCTCA 57.284 45.455 9.52 0.00 0.00 4.26
244 246 5.801380 AGTATGCCTCTACTAGACTAGCTC 58.199 45.833 9.52 0.00 30.16 4.09
271 273 6.483974 TGAATACATAGACAAAACACCGTGTT 59.516 34.615 11.24 11.24 43.41 3.32
302 304 9.712359 GAATTGTATTAACCGGAAACTTGATAC 57.288 33.333 9.46 9.36 0.00 2.24
397 399 9.965824 CGTATAATTTTTGAAGGAAATATGCCT 57.034 29.630 0.00 0.00 37.35 4.75
431 433 9.647918 ATCTCACCTCAAGTCTACAGAAATATA 57.352 33.333 0.00 0.00 0.00 0.86
438 440 5.417266 TCTCAATCTCACCTCAAGTCTACAG 59.583 44.000 0.00 0.00 0.00 2.74
439 441 5.184096 GTCTCAATCTCACCTCAAGTCTACA 59.816 44.000 0.00 0.00 0.00 2.74
440 442 5.417580 AGTCTCAATCTCACCTCAAGTCTAC 59.582 44.000 0.00 0.00 0.00 2.59
457 463 3.184628 AGGATCCATCAACCAGTCTCAA 58.815 45.455 15.82 0.00 0.00 3.02
465 471 7.255625 GCCTTAATTTTAGAGGATCCATCAACC 60.256 40.741 15.82 0.00 33.66 3.77
471 477 4.445735 CGGGCCTTAATTTTAGAGGATCCA 60.446 45.833 15.82 0.00 33.66 3.41
494 500 7.656707 TTCTAAAAATCCTGCAAATCAAAGC 57.343 32.000 0.00 0.00 0.00 3.51
539 545 2.228545 TGGGCATGCCACTTAAATCA 57.771 45.000 36.56 20.23 37.98 2.57
545 551 1.350071 TTGAAATGGGCATGCCACTT 58.650 45.000 36.56 25.25 37.98 3.16
572 1693 3.788227 ACAAACACTCTAGGCCAATCA 57.212 42.857 5.01 0.00 0.00 2.57
573 1694 3.821033 ACAACAAACACTCTAGGCCAATC 59.179 43.478 5.01 0.00 0.00 2.67
575 1696 3.211045 GACAACAAACACTCTAGGCCAA 58.789 45.455 5.01 0.00 0.00 4.52
577 1698 2.548480 GTGACAACAAACACTCTAGGCC 59.452 50.000 0.00 0.00 34.65 5.19
580 1701 6.662414 TTTCTGTGACAACAAACACTCTAG 57.338 37.500 0.00 0.00 35.37 2.43
625 1746 7.300556 TGGAAATCAAAGATCCATTTCAACA 57.699 32.000 14.32 6.01 38.30 3.33
728 1850 5.577945 GGCGTTTGATTCACATGATTGAATT 59.422 36.000 11.60 0.00 44.59 2.17
730 1852 4.484236 GGCGTTTGATTCACATGATTGAA 58.516 39.130 0.00 0.00 39.79 2.69
740 1862 4.013050 TCATATGTTGGGCGTTTGATTCA 58.987 39.130 1.90 0.00 0.00 2.57
800 1922 2.293122 CAGATCCTGTAAGCCTCTCTCG 59.707 54.545 0.00 0.00 0.00 4.04
826 1951 2.104963 AGTCGAGGCAAAAGAAACCTCT 59.895 45.455 6.70 0.00 46.49 3.69
833 1958 1.733041 CGCGAGTCGAGGCAAAAGA 60.733 57.895 18.61 0.00 41.67 2.52
844 1969 2.518949 TAACCGATGTTTACGCGAGTC 58.481 47.619 15.93 0.26 39.70 3.36
871 1996 3.582164 ACTCCAAGTTCCTTGTCTCTCT 58.418 45.455 3.53 0.00 39.58 3.10
872 1997 4.061596 CAACTCCAAGTTCCTTGTCTCTC 58.938 47.826 3.53 0.00 39.58 3.20
873 1998 3.745797 GCAACTCCAAGTTCCTTGTCTCT 60.746 47.826 3.53 0.00 39.58 3.10
914 2039 2.047560 GTGACTACCGCCACACCC 60.048 66.667 0.00 0.00 33.72 4.61
915 2040 2.431942 CGTGACTACCGCCACACC 60.432 66.667 0.00 0.00 33.13 4.16
925 2050 1.324383 TCTGCCTTGTGTCGTGACTA 58.676 50.000 1.23 0.00 0.00 2.59
945 2070 1.253100 GCGTTTCCTTCCCCAATTCA 58.747 50.000 0.00 0.00 0.00 2.57
981 2106 3.851955 GGCCGGTCCGAGATAGAA 58.148 61.111 14.39 0.00 0.00 2.10
1164 2289 1.536073 CGGTGAAGTGGCAGAGGAGA 61.536 60.000 0.00 0.00 0.00 3.71
1237 2363 2.435059 GGAACTGAGCAGGGACGC 60.435 66.667 2.20 0.00 0.00 5.19
1238 2364 1.216710 GAGGAACTGAGCAGGGACG 59.783 63.158 2.20 0.00 41.55 4.79
1256 2402 1.329599 GGTAATTAGCAAACGCCGAGG 59.670 52.381 9.77 0.00 0.00 4.63
1261 2407 2.159310 TGCCATGGTAATTAGCAAACGC 60.159 45.455 20.35 19.64 37.24 4.84
1264 2410 4.669206 CCATGCCATGGTAATTAGCAAA 57.331 40.909 20.35 8.02 45.54 3.68
1277 2423 3.078836 GCTTGGGTGCCATGCCAT 61.079 61.111 0.00 0.00 45.27 4.40
1281 2427 3.460103 GAAATTATGCTTGGGTGCCATG 58.540 45.455 0.00 0.00 31.53 3.66
1283 2429 1.830477 GGAAATTATGCTTGGGTGCCA 59.170 47.619 0.00 0.00 0.00 4.92
1284 2430 1.138859 GGGAAATTATGCTTGGGTGCC 59.861 52.381 0.00 0.00 0.00 5.01
1285 2431 1.138859 GGGGAAATTATGCTTGGGTGC 59.861 52.381 0.00 0.00 0.00 5.01
1288 2434 3.322828 CAGATGGGGAAATTATGCTTGGG 59.677 47.826 0.00 0.00 0.00 4.12
1290 2436 5.452356 GGAACAGATGGGGAAATTATGCTTG 60.452 44.000 0.00 0.00 0.00 4.01
1292 2438 4.218312 GGAACAGATGGGGAAATTATGCT 58.782 43.478 0.00 0.00 0.00 3.79
1293 2439 3.960102 TGGAACAGATGGGGAAATTATGC 59.040 43.478 0.00 0.00 0.00 3.14
1294 2440 4.342092 GGTGGAACAGATGGGGAAATTATG 59.658 45.833 0.00 0.00 41.80 1.90
1295 2441 4.232820 AGGTGGAACAGATGGGGAAATTAT 59.767 41.667 0.00 0.00 41.80 1.28
1310 2457 3.699538 GGGAATACAAATGGAGGTGGAAC 59.300 47.826 0.00 0.00 0.00 3.62
1311 2458 3.596046 AGGGAATACAAATGGAGGTGGAA 59.404 43.478 0.00 0.00 0.00 3.53
1313 2460 3.053693 TGAGGGAATACAAATGGAGGTGG 60.054 47.826 0.00 0.00 0.00 4.61
1315 2462 3.591527 TGTGAGGGAATACAAATGGAGGT 59.408 43.478 0.00 0.00 0.00 3.85
1316 2463 4.235079 TGTGAGGGAATACAAATGGAGG 57.765 45.455 0.00 0.00 0.00 4.30
1324 2483 8.581578 GGAAAAGTAAATTTGTGAGGGAATACA 58.418 33.333 0.00 0.00 0.00 2.29
1326 2485 8.950007 AGGAAAAGTAAATTTGTGAGGGAATA 57.050 30.769 0.00 0.00 0.00 1.75
1332 2491 7.707104 ACAGTGAGGAAAAGTAAATTTGTGAG 58.293 34.615 0.00 0.00 0.00 3.51
1336 2495 7.805071 CAGCTACAGTGAGGAAAAGTAAATTTG 59.195 37.037 0.00 0.00 0.00 2.32
1340 2499 6.169557 TCAGCTACAGTGAGGAAAAGTAAA 57.830 37.500 0.00 0.00 0.00 2.01
1345 2504 5.938125 GGTTATTCAGCTACAGTGAGGAAAA 59.062 40.000 0.00 0.00 0.00 2.29
1351 2510 5.483685 AACTGGTTATTCAGCTACAGTGA 57.516 39.130 0.00 0.00 38.96 3.41
1353 2512 5.420409 GCTAACTGGTTATTCAGCTACAGT 58.580 41.667 0.00 0.00 40.55 3.55
1354 2513 4.811557 GGCTAACTGGTTATTCAGCTACAG 59.188 45.833 0.00 0.00 38.26 2.74
1370 2529 0.537188 ACTGTATGCGCAGGCTAACT 59.463 50.000 18.32 0.00 40.59 2.24
1371 2530 1.327764 GAACTGTATGCGCAGGCTAAC 59.672 52.381 18.32 9.32 40.59 2.34
1372 2531 1.651987 GAACTGTATGCGCAGGCTAA 58.348 50.000 18.32 0.00 40.59 3.09
1374 2533 1.450312 GGAACTGTATGCGCAGGCT 60.450 57.895 18.32 0.56 40.59 4.58
1375 2534 1.709147 CTGGAACTGTATGCGCAGGC 61.709 60.000 18.32 11.81 40.59 4.85
1377 2536 1.020861 TGCTGGAACTGTATGCGCAG 61.021 55.000 18.32 4.18 41.92 5.18
1378 2537 0.392863 ATGCTGGAACTGTATGCGCA 60.393 50.000 14.96 14.96 30.89 6.09
1379 2538 0.305922 GATGCTGGAACTGTATGCGC 59.694 55.000 0.00 0.00 32.35 6.09
1380 2539 0.940126 GGATGCTGGAACTGTATGCG 59.060 55.000 0.00 0.00 31.81 4.73
1381 2540 0.940126 CGGATGCTGGAACTGTATGC 59.060 55.000 0.00 0.00 37.36 3.14
1382 2541 2.602257 TCGGATGCTGGAACTGTATG 57.398 50.000 0.00 0.00 32.35 2.39
1384 2543 3.627395 AAATCGGATGCTGGAACTGTA 57.373 42.857 0.00 0.00 0.00 2.74
1386 2545 4.191544 TCTAAAATCGGATGCTGGAACTG 58.808 43.478 0.00 0.00 0.00 3.16
1394 2554 2.945668 ACAGGCTTCTAAAATCGGATGC 59.054 45.455 0.00 0.00 33.65 3.91
1399 2559 3.268023 AGGGACAGGCTTCTAAAATCG 57.732 47.619 0.00 0.00 0.00 3.34
1400 2561 3.948473 GGAAGGGACAGGCTTCTAAAATC 59.052 47.826 0.00 0.00 0.00 2.17
1404 2565 2.344093 AGGAAGGGACAGGCTTCTAA 57.656 50.000 0.00 0.00 0.00 2.10
1406 2567 1.450360 AAAGGAAGGGACAGGCTTCT 58.550 50.000 0.00 0.00 0.00 2.85
1407 2568 1.889170 CAAAAGGAAGGGACAGGCTTC 59.111 52.381 0.00 0.00 0.00 3.86
1409 2570 0.540597 GCAAAAGGAAGGGACAGGCT 60.541 55.000 0.00 0.00 0.00 4.58
1410 2571 0.540597 AGCAAAAGGAAGGGACAGGC 60.541 55.000 0.00 0.00 0.00 4.85
1411 2572 1.202927 TCAGCAAAAGGAAGGGACAGG 60.203 52.381 0.00 0.00 0.00 4.00
1412 2573 2.276732 TCAGCAAAAGGAAGGGACAG 57.723 50.000 0.00 0.00 0.00 3.51
1413 2574 2.517959 CATCAGCAAAAGGAAGGGACA 58.482 47.619 0.00 0.00 0.00 4.02
1414 2575 1.821136 CCATCAGCAAAAGGAAGGGAC 59.179 52.381 0.00 0.00 0.00 4.46
1416 2577 1.928868 ACCATCAGCAAAAGGAAGGG 58.071 50.000 0.00 0.00 0.00 3.95
1418 2579 3.068590 ACACAACCATCAGCAAAAGGAAG 59.931 43.478 0.00 0.00 0.00 3.46
1419 2580 3.030291 ACACAACCATCAGCAAAAGGAA 58.970 40.909 0.00 0.00 0.00 3.36
1420 2581 2.665165 ACACAACCATCAGCAAAAGGA 58.335 42.857 0.00 0.00 0.00 3.36
1573 2799 3.067180 CCGAAAATGCAGCATCCAAGTAT 59.933 43.478 8.77 0.00 0.00 2.12
1612 2838 3.251484 TCCCACCCAATTAAATTTGGCA 58.749 40.909 0.00 0.00 44.04 4.92
1636 2862 3.336468 ACCAACGGCGTGTATTATTTCA 58.664 40.909 15.70 0.00 0.00 2.69
1637 2863 4.142859 TGAACCAACGGCGTGTATTATTTC 60.143 41.667 15.70 10.17 0.00 2.17
1638 2864 3.752222 TGAACCAACGGCGTGTATTATTT 59.248 39.130 15.70 0.00 0.00 1.40
1639 2865 3.336468 TGAACCAACGGCGTGTATTATT 58.664 40.909 15.70 2.35 0.00 1.40
1640 2866 2.975266 TGAACCAACGGCGTGTATTAT 58.025 42.857 15.70 0.00 0.00 1.28
1644 2870 1.009903 CGATGAACCAACGGCGTGTA 61.010 55.000 15.70 0.00 0.00 2.90
1656 2882 1.453155 AGTGACCAATGCCGATGAAC 58.547 50.000 0.00 0.00 0.00 3.18
1660 2886 1.210478 AGCTAAGTGACCAATGCCGAT 59.790 47.619 0.00 0.00 0.00 4.18
1663 2889 1.340017 TGGAGCTAAGTGACCAATGCC 60.340 52.381 0.00 0.00 0.00 4.40
1665 2891 2.868583 CGATGGAGCTAAGTGACCAATG 59.131 50.000 0.00 0.00 36.00 2.82
1673 3061 2.388735 TGTGGATCGATGGAGCTAAGT 58.611 47.619 0.54 0.00 0.00 2.24
1689 3077 4.766891 AGTACAAGAAAACATCCCATGTGG 59.233 41.667 0.00 0.00 44.07 4.17
1713 3106 5.014228 GCCATGGGGATTATAACTAGGAAGT 59.986 44.000 15.13 0.00 34.60 3.01
1803 3213 4.910458 TTCACCCCCTCAAAAACAAAAA 57.090 36.364 0.00 0.00 0.00 1.94
1804 3214 4.910458 TTTCACCCCCTCAAAAACAAAA 57.090 36.364 0.00 0.00 0.00 2.44
1805 3215 4.471386 TCATTTCACCCCCTCAAAAACAAA 59.529 37.500 0.00 0.00 0.00 2.83
1806 3216 4.033709 TCATTTCACCCCCTCAAAAACAA 58.966 39.130 0.00 0.00 0.00 2.83
1807 3217 3.640967 CTCATTTCACCCCCTCAAAAACA 59.359 43.478 0.00 0.00 0.00 2.83
1808 3218 3.554960 GCTCATTTCACCCCCTCAAAAAC 60.555 47.826 0.00 0.00 0.00 2.43
1809 3219 2.632512 GCTCATTTCACCCCCTCAAAAA 59.367 45.455 0.00 0.00 0.00 1.94
1810 3220 2.158325 AGCTCATTTCACCCCCTCAAAA 60.158 45.455 0.00 0.00 0.00 2.44
1811 3221 1.428912 AGCTCATTTCACCCCCTCAAA 59.571 47.619 0.00 0.00 0.00 2.69
1812 3222 1.004745 GAGCTCATTTCACCCCCTCAA 59.995 52.381 9.40 0.00 0.00 3.02
1813 3223 0.620556 GAGCTCATTTCACCCCCTCA 59.379 55.000 9.40 0.00 0.00 3.86
1814 3224 0.620556 TGAGCTCATTTCACCCCCTC 59.379 55.000 13.74 0.00 0.00 4.30
1815 3225 1.302907 ATGAGCTCATTTCACCCCCT 58.697 50.000 23.75 0.00 31.37 4.79
1816 3226 3.297134 TTATGAGCTCATTTCACCCCC 57.703 47.619 32.94 0.00 37.76 5.40
1817 3227 4.273318 ACTTTATGAGCTCATTTCACCCC 58.727 43.478 32.94 0.00 37.76 4.95
1818 3228 5.904362 AACTTTATGAGCTCATTTCACCC 57.096 39.130 32.94 0.00 37.76 4.61
1819 3229 7.377766 TGTAACTTTATGAGCTCATTTCACC 57.622 36.000 32.94 15.67 37.76 4.02
1826 3236 9.755804 CTCTGATAATGTAACTTTATGAGCTCA 57.244 33.333 20.79 20.79 0.00 4.26
1827 3237 9.973450 TCTCTGATAATGTAACTTTATGAGCTC 57.027 33.333 6.82 6.82 0.00 4.09
1863 3273 6.259167 GTGGAGTACAATTGTGTGAACTACAA 59.741 38.462 20.68 7.32 38.39 2.41
1971 3389 7.726079 TGACAAACTAAACGAATCTTGATACG 58.274 34.615 0.00 0.00 0.00 3.06
1995 3413 9.793252 AGCACTAGAGCATTATTAACAAAATTG 57.207 29.630 14.80 0.00 36.85 2.32
2007 3425 4.020218 ACTTGGTCAAGCACTAGAGCATTA 60.020 41.667 14.80 0.00 41.31 1.90
2023 3441 1.589803 ACAACTACCGCAACTTGGTC 58.410 50.000 0.00 0.00 40.96 4.02
2033 3451 5.988092 TCGGAATAAAAACAACAACTACCG 58.012 37.500 0.00 0.00 37.37 4.02
2092 3512 3.242543 GCACGATATTCCAACAGCTCAAG 60.243 47.826 0.00 0.00 0.00 3.02
2118 3538 5.429957 ACAATCACAAGAACTTCAGAAGC 57.570 39.130 10.33 0.00 0.00 3.86
2329 3752 2.175878 ACAGGCTTACAGCTCACAAG 57.824 50.000 0.00 0.00 41.99 3.16
2334 3757 3.274288 AGCAATTACAGGCTTACAGCTC 58.726 45.455 0.00 0.00 41.99 4.09
2372 3799 9.420118 AGGCAACATTATTCCATTACATTAAGA 57.580 29.630 0.00 0.00 41.41 2.10
2374 3801 9.814899 CAAGGCAACATTATTCCATTACATTAA 57.185 29.630 0.00 0.00 41.41 1.40
2407 3834 9.533831 ACACTCCTGAAGTAATTTCCATATTTT 57.466 29.630 0.00 0.00 36.07 1.82
2422 3849 4.428209 CAGTATGTAGCACACTCCTGAAG 58.572 47.826 0.00 0.00 0.00 3.02
2432 3859 5.006746 GTCCTTGTAATGCAGTATGTAGCAC 59.993 44.000 0.00 0.00 44.49 4.40
2444 3871 3.514645 CATGCAAAGGTCCTTGTAATGC 58.485 45.455 16.15 16.15 0.00 3.56
2447 3874 2.875296 AGCATGCAAAGGTCCTTGTAA 58.125 42.857 21.98 0.00 0.00 2.41
2449 3876 1.615392 GAAGCATGCAAAGGTCCTTGT 59.385 47.619 21.98 0.00 0.00 3.16
2450 3877 1.614903 TGAAGCATGCAAAGGTCCTTG 59.385 47.619 21.98 0.86 0.00 3.61
2451 3878 1.999648 TGAAGCATGCAAAGGTCCTT 58.000 45.000 21.98 0.00 0.00 3.36
2452 3879 2.226962 ATGAAGCATGCAAAGGTCCT 57.773 45.000 21.98 0.00 0.00 3.85
2453 3880 2.613691 CAATGAAGCATGCAAAGGTCC 58.386 47.619 21.98 0.96 0.00 4.46
2523 3964 4.929211 TCAGACTTATTCATGTTCGTGGTG 59.071 41.667 0.00 0.00 0.00 4.17
2528 3969 6.330278 TGGTAGTCAGACTTATTCATGTTCG 58.670 40.000 8.80 0.00 0.00 3.95
2563 4004 2.050144 TGATCCCTGGAGGTATCTTGC 58.950 52.381 0.00 0.00 36.75 4.01
2567 4008 1.349357 GCCTTGATCCCTGGAGGTATC 59.651 57.143 0.00 0.00 36.75 2.24
2568 4009 1.061033 AGCCTTGATCCCTGGAGGTAT 60.061 52.381 0.00 0.00 36.75 2.73
2569 4010 0.343372 AGCCTTGATCCCTGGAGGTA 59.657 55.000 0.00 0.00 36.75 3.08
2570 4011 0.343372 TAGCCTTGATCCCTGGAGGT 59.657 55.000 0.00 0.00 36.75 3.85
2571 4012 1.511613 TTAGCCTTGATCCCTGGAGG 58.488 55.000 0.00 0.00 0.00 4.30
2572 4013 2.039613 GGATTAGCCTTGATCCCTGGAG 59.960 54.545 0.00 0.00 36.61 3.86
2573 4014 2.057922 GGATTAGCCTTGATCCCTGGA 58.942 52.381 0.00 0.00 36.61 3.86
2575 4016 3.803186 ATGGATTAGCCTTGATCCCTG 57.197 47.619 4.83 0.00 40.92 4.45
2577 4018 6.976934 TTTAAATGGATTAGCCTTGATCCC 57.023 37.500 4.83 0.00 40.92 3.85
2616 4060 5.649395 CCTGGCTCAGAGTCATATTTCAAAA 59.351 40.000 4.84 0.00 32.44 2.44
2618 4062 4.225942 ACCTGGCTCAGAGTCATATTTCAA 59.774 41.667 4.84 0.00 32.44 2.69
2619 4063 3.776969 ACCTGGCTCAGAGTCATATTTCA 59.223 43.478 4.84 0.00 32.44 2.69
2620 4064 4.125703 CACCTGGCTCAGAGTCATATTTC 58.874 47.826 4.84 0.00 32.44 2.17
2622 4066 3.110705 ACACCTGGCTCAGAGTCATATT 58.889 45.455 4.84 0.00 32.44 1.28
2623 4067 2.433604 CACACCTGGCTCAGAGTCATAT 59.566 50.000 4.84 0.00 32.44 1.78
2624 4068 1.827344 CACACCTGGCTCAGAGTCATA 59.173 52.381 4.84 0.00 32.44 2.15
2627 4091 0.246086 CTCACACCTGGCTCAGAGTC 59.754 60.000 0.00 0.00 32.44 3.36
2631 4095 0.683973 AGAACTCACACCTGGCTCAG 59.316 55.000 0.00 0.00 0.00 3.35
2652 4117 6.373774 GGATGCCTTAGGACATCAGAATATTG 59.626 42.308 25.36 0.00 43.64 1.90
2653 4118 6.274200 AGGATGCCTTAGGACATCAGAATATT 59.726 38.462 25.36 0.00 43.64 1.28
2655 4120 5.158141 AGGATGCCTTAGGACATCAGAATA 58.842 41.667 25.36 0.00 43.64 1.75
2677 4142 5.645067 TGCTAGGAATCATCAGTTTGACAAG 59.355 40.000 0.00 0.00 0.00 3.16
2680 4145 7.877097 AGATATGCTAGGAATCATCAGTTTGAC 59.123 37.037 0.00 0.00 0.00 3.18
2686 4151 6.932947 TGTCAGATATGCTAGGAATCATCAG 58.067 40.000 0.00 0.00 0.00 2.90
2687 4152 6.923199 TGTCAGATATGCTAGGAATCATCA 57.077 37.500 0.00 0.00 0.00 3.07
2692 4157 7.743749 AGTTGAATGTCAGATATGCTAGGAAT 58.256 34.615 0.00 0.00 0.00 3.01
2700 4165 6.980978 ACGGAAGTAGTTGAATGTCAGATATG 59.019 38.462 0.00 0.00 46.88 1.78
2724 4189 7.065778 GGCATAACCAGATTTCAAGTGGAAAC 61.066 42.308 0.00 0.00 42.70 2.78
2725 4190 5.047377 GGCATAACCAGATTTCAAGTGGAAA 60.047 40.000 0.00 0.00 43.46 3.13
2732 4197 4.608269 TGATGGGCATAACCAGATTTCAA 58.392 39.130 0.00 0.00 45.20 2.69
2735 4200 4.524802 TCTGATGGGCATAACCAGATTT 57.475 40.909 0.00 0.00 45.20 2.17
2741 4206 3.567478 AGACTTCTGATGGGCATAACC 57.433 47.619 0.00 0.00 37.93 2.85
2742 4207 4.096984 CCAAAGACTTCTGATGGGCATAAC 59.903 45.833 4.18 0.00 32.89 1.89
2743 4208 4.263905 ACCAAAGACTTCTGATGGGCATAA 60.264 41.667 13.28 0.00 37.81 1.90
2744 4209 3.266772 ACCAAAGACTTCTGATGGGCATA 59.733 43.478 13.28 0.00 37.81 3.14
2745 4210 2.042162 ACCAAAGACTTCTGATGGGCAT 59.958 45.455 13.28 0.00 37.81 4.40
2746 4211 1.425066 ACCAAAGACTTCTGATGGGCA 59.575 47.619 13.28 0.00 37.81 5.36
2747 4212 2.087646 GACCAAAGACTTCTGATGGGC 58.912 52.381 13.28 8.31 37.81 5.36
2748 4213 3.710209 AGACCAAAGACTTCTGATGGG 57.290 47.619 13.28 1.82 37.81 4.00
2752 4233 3.134623 TGCTGAAGACCAAAGACTTCTGA 59.865 43.478 14.49 2.12 42.83 3.27
2776 4257 9.383519 CATAACATATATCAGCCCGAATAACTT 57.616 33.333 0.00 0.00 0.00 2.66
2782 4263 6.109156 ACACATAACATATATCAGCCCGAA 57.891 37.500 0.00 0.00 0.00 4.30
2802 4283 8.764524 ACAGAGAGTTGTTTGATAATCTACAC 57.235 34.615 0.00 0.00 0.00 2.90
2809 4290 9.208022 CAGTGATAACAGAGAGTTGTTTGATAA 57.792 33.333 0.00 0.00 41.50 1.75
2815 4296 5.305644 AGGACAGTGATAACAGAGAGTTGTT 59.694 40.000 0.00 0.00 41.50 2.83
2816 4297 4.835615 AGGACAGTGATAACAGAGAGTTGT 59.164 41.667 0.00 0.00 41.50 3.32
2827 4308 2.423892 GTCAGCGAGAGGACAGTGATAA 59.576 50.000 0.00 0.00 34.22 1.75
2832 4313 0.600557 CAAGTCAGCGAGAGGACAGT 59.399 55.000 0.00 0.00 36.50 3.55
2843 4324 3.434984 GGTCAGATGAAGAACAAGTCAGC 59.565 47.826 0.00 0.00 0.00 4.26
2853 4334 8.542926 TGATTGAAATAAGAGGTCAGATGAAGA 58.457 33.333 0.00 0.00 0.00 2.87
2859 4340 8.772250 AGGTATTGATTGAAATAAGAGGTCAGA 58.228 33.333 0.00 0.00 0.00 3.27
2877 4358 9.184523 CACCATTTTAATGACCTTAGGTATTGA 57.815 33.333 2.88 0.00 38.70 2.57
2881 4362 8.164733 TGTTCACCATTTTAATGACCTTAGGTA 58.835 33.333 2.88 0.00 38.70 3.08
2888 4369 4.770010 TCCCTGTTCACCATTTTAATGACC 59.230 41.667 4.07 0.00 38.70 4.02
2889 4370 5.622233 GCTCCCTGTTCACCATTTTAATGAC 60.622 44.000 4.07 0.00 38.70 3.06
2933 4421 9.284594 GCGTACAATAATTTCTGCTGAAAATTA 57.715 29.630 20.69 17.76 44.22 1.40
2935 4423 7.538575 AGCGTACAATAATTTCTGCTGAAAAT 58.461 30.769 20.69 15.65 44.22 1.82
2940 4428 7.636359 GTCTTTAGCGTACAATAATTTCTGCTG 59.364 37.037 0.00 0.00 32.93 4.41
2943 4431 8.869897 TCTGTCTTTAGCGTACAATAATTTCTG 58.130 33.333 0.00 0.00 0.00 3.02
2945 4433 9.851043 GATCTGTCTTTAGCGTACAATAATTTC 57.149 33.333 0.00 0.00 0.00 2.17
2953 4441 4.461431 TGGAAGATCTGTCTTTAGCGTACA 59.539 41.667 0.00 0.00 44.57 2.90
2954 4442 4.995124 TGGAAGATCTGTCTTTAGCGTAC 58.005 43.478 0.00 0.00 44.57 3.67
2956 4444 4.744795 ATGGAAGATCTGTCTTTAGCGT 57.255 40.909 0.00 0.00 44.57 5.07
2958 4446 5.882557 TCCAAATGGAAGATCTGTCTTTAGC 59.117 40.000 0.00 0.00 44.57 3.09
2990 4478 2.371841 ACAACAGAGACAGCCATGGTAA 59.628 45.455 14.67 0.00 0.00 2.85
2991 4479 1.977854 ACAACAGAGACAGCCATGGTA 59.022 47.619 14.67 0.00 0.00 3.25
3003 4491 3.066064 CGATGACCTAGGAGACAACAGAG 59.934 52.174 17.98 1.42 0.00 3.35
3010 4498 2.054232 TCACCGATGACCTAGGAGAC 57.946 55.000 17.98 7.09 0.00 3.36
3044 4532 5.808366 ATGGCCGATAACAAGAGAGATAA 57.192 39.130 0.00 0.00 0.00 1.75
3046 4534 4.835615 AGTATGGCCGATAACAAGAGAGAT 59.164 41.667 0.00 0.00 0.00 2.75
3048 4536 4.592485 AGTATGGCCGATAACAAGAGAG 57.408 45.455 0.00 0.00 0.00 3.20
3051 4539 4.038763 CCTGTAGTATGGCCGATAACAAGA 59.961 45.833 0.00 0.00 0.00 3.02
3052 4540 4.307432 CCTGTAGTATGGCCGATAACAAG 58.693 47.826 0.00 0.00 0.00 3.16
3053 4541 3.070446 CCCTGTAGTATGGCCGATAACAA 59.930 47.826 0.00 0.00 0.00 2.83
3054 4542 2.631062 CCCTGTAGTATGGCCGATAACA 59.369 50.000 0.00 0.00 0.00 2.41
3055 4543 2.631545 ACCCTGTAGTATGGCCGATAAC 59.368 50.000 0.00 0.00 0.00 1.89
3056 4544 2.631062 CACCCTGTAGTATGGCCGATAA 59.369 50.000 0.00 0.00 0.00 1.75
3057 4545 2.158430 TCACCCTGTAGTATGGCCGATA 60.158 50.000 0.00 0.00 0.00 2.92
3058 4546 1.048601 CACCCTGTAGTATGGCCGAT 58.951 55.000 0.00 0.00 0.00 4.18
3059 4547 0.032912 TCACCCTGTAGTATGGCCGA 60.033 55.000 0.00 0.00 0.00 5.54
3060 4548 0.104304 GTCACCCTGTAGTATGGCCG 59.896 60.000 0.00 0.00 0.00 6.13
3061 4549 1.497161 AGTCACCCTGTAGTATGGCC 58.503 55.000 0.00 0.00 0.00 5.36
3062 4550 2.628657 CCTAGTCACCCTGTAGTATGGC 59.371 54.545 0.00 0.00 0.00 4.40
3063 4551 2.628657 GCCTAGTCACCCTGTAGTATGG 59.371 54.545 0.00 0.00 0.00 2.74
3064 4552 3.068307 GTGCCTAGTCACCCTGTAGTATG 59.932 52.174 0.00 0.00 0.00 2.39
3065 4553 3.297736 GTGCCTAGTCACCCTGTAGTAT 58.702 50.000 0.00 0.00 0.00 2.12
3066 4554 2.731572 GTGCCTAGTCACCCTGTAGTA 58.268 52.381 0.00 0.00 0.00 1.82
3067 4555 1.558233 GTGCCTAGTCACCCTGTAGT 58.442 55.000 0.00 0.00 0.00 2.73
3075 4563 4.303257 GCTTGGGTGCCTAGTCAC 57.697 61.111 0.00 0.00 36.28 3.67
3118 4606 9.653287 CTCCACTACAGTTACAATCTTGATTAA 57.347 33.333 0.00 0.00 0.00 1.40
3128 4616 2.565834 GCCTCCTCCACTACAGTTACAA 59.434 50.000 0.00 0.00 0.00 2.41
3131 4619 1.078159 TGGCCTCCTCCACTACAGTTA 59.922 52.381 3.32 0.00 0.00 2.24
3134 4622 0.984230 TTTGGCCTCCTCCACTACAG 59.016 55.000 3.32 0.00 35.50 2.74
3136 4624 0.253327 CCTTTGGCCTCCTCCACTAC 59.747 60.000 3.32 0.00 35.50 2.73
3137 4625 0.914417 CCCTTTGGCCTCCTCCACTA 60.914 60.000 3.32 0.00 35.50 2.74
3138 4626 2.234296 CCCTTTGGCCTCCTCCACT 61.234 63.158 3.32 0.00 35.50 4.00
3157 4645 1.065854 GCTGTAGTTGGTGATCTGCCT 60.066 52.381 8.07 0.00 0.00 4.75
3176 4664 1.376553 GAGAGCCACTCCAAGGTGC 60.377 63.158 0.00 0.00 39.53 5.01
3189 4677 6.246932 AATCTGTGGATGAGCTCTGAGAGC 62.247 50.000 26.19 26.19 42.69 4.09
3221 4709 2.053244 CAGGATGGAGCAGGTAAGGAT 58.947 52.381 0.00 0.00 0.00 3.24
3235 4723 5.882000 TCTGTTGTTTGATACATCCAGGATG 59.118 40.000 25.87 25.87 44.71 3.51
3239 4727 6.990341 TGATCTGTTGTTTGATACATCCAG 57.010 37.500 0.00 0.00 37.40 3.86
3240 4728 7.201635 CGATTGATCTGTTGTTTGATACATCCA 60.202 37.037 0.00 0.00 36.44 3.41
3241 4729 7.011389 TCGATTGATCTGTTGTTTGATACATCC 59.989 37.037 0.00 0.00 36.44 3.51
3242 4730 7.909267 TCGATTGATCTGTTGTTTGATACATC 58.091 34.615 0.00 0.00 36.44 3.06
3243 4731 7.550551 ACTCGATTGATCTGTTGTTTGATACAT 59.449 33.333 0.00 0.00 36.44 2.29
3244 4732 6.873605 ACTCGATTGATCTGTTGTTTGATACA 59.126 34.615 0.00 0.00 34.12 2.29
3245 4733 7.295952 ACTCGATTGATCTGTTGTTTGATAC 57.704 36.000 0.00 0.00 0.00 2.24
3246 4734 6.535150 GGACTCGATTGATCTGTTGTTTGATA 59.465 38.462 0.00 0.00 0.00 2.15
3247 4735 5.352569 GGACTCGATTGATCTGTTGTTTGAT 59.647 40.000 0.00 0.00 0.00 2.57
3248 4736 4.690748 GGACTCGATTGATCTGTTGTTTGA 59.309 41.667 0.00 0.00 0.00 2.69
3249 4737 4.452114 TGGACTCGATTGATCTGTTGTTTG 59.548 41.667 0.00 0.00 0.00 2.93
3250 4738 4.641396 TGGACTCGATTGATCTGTTGTTT 58.359 39.130 0.00 0.00 0.00 2.83
3253 4741 4.034858 CCAATGGACTCGATTGATCTGTTG 59.965 45.833 13.73 0.00 33.36 3.33
3256 4744 3.558829 CACCAATGGACTCGATTGATCTG 59.441 47.826 6.16 4.36 33.36 2.90
3259 4747 3.634397 ACACCAATGGACTCGATTGAT 57.366 42.857 6.16 0.00 33.36 2.57
3266 4754 4.264253 TCATCATGAACACCAATGGACTC 58.736 43.478 6.16 0.00 0.00 3.36
3274 4762 3.263937 TGTCATCCTCATCATGAACACCA 59.736 43.478 0.00 0.00 31.98 4.17
3276 4764 5.121105 TGATGTCATCCTCATCATGAACAC 58.879 41.667 10.36 0.00 44.14 3.32
3279 4767 5.747342 TGTTGATGTCATCCTCATCATGAA 58.253 37.500 10.36 0.00 46.84 2.57
3289 4777 3.612479 GCACCTTGTTGTTGATGTCATCC 60.612 47.826 10.36 0.00 0.00 3.51
3290 4778 3.568538 GCACCTTGTTGTTGATGTCATC 58.431 45.455 5.83 5.83 0.00 2.92
3291 4779 2.297033 GGCACCTTGTTGTTGATGTCAT 59.703 45.455 0.00 0.00 0.00 3.06
3292 4780 1.680735 GGCACCTTGTTGTTGATGTCA 59.319 47.619 0.00 0.00 0.00 3.58
3293 4781 1.680735 TGGCACCTTGTTGTTGATGTC 59.319 47.619 0.00 0.00 0.00 3.06
3294 4782 1.774110 TGGCACCTTGTTGTTGATGT 58.226 45.000 0.00 0.00 0.00 3.06
3295 4783 2.159128 TGTTGGCACCTTGTTGTTGATG 60.159 45.455 0.00 0.00 0.00 3.07
3296 4784 2.106566 TGTTGGCACCTTGTTGTTGAT 58.893 42.857 0.00 0.00 0.00 2.57
3297 4785 1.550327 TGTTGGCACCTTGTTGTTGA 58.450 45.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.