Multiple sequence alignment - TraesCS1B01G365700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G365700 chr1B 100.000 2637 0 0 1 2637 596928154 596930790 0.000000e+00 4870.0
1 TraesCS1B01G365700 chr1B 79.676 925 131 36 887 1802 597068536 597069412 4.820000e-172 614.0
2 TraesCS1B01G365700 chr1B 82.068 474 64 13 1329 1801 596999793 597000246 4.120000e-103 385.0
3 TraesCS1B01G365700 chr1B 79.706 340 53 9 1469 1796 597083810 597084145 5.680000e-57 231.0
4 TraesCS1B01G365700 chr1B 92.453 106 8 0 1110 1215 596999608 596999713 4.550000e-33 152.0
5 TraesCS1B01G365700 chr1D 91.638 1160 52 23 691 1823 439670880 439672021 0.000000e+00 1563.0
6 TraesCS1B01G365700 chr1D 93.090 521 24 5 133 641 439670356 439670876 0.000000e+00 752.0
7 TraesCS1B01G365700 chr1D 80.841 809 114 22 998 1802 439733191 439733962 4.860000e-167 597.0
8 TraesCS1B01G365700 chr1D 85.378 595 52 14 1818 2405 439680627 439681193 3.780000e-163 584.0
9 TraesCS1B01G365700 chr1D 80.987 689 83 29 1110 1796 439726703 439727345 1.090000e-138 503.0
10 TraesCS1B01G365700 chr1D 92.308 91 5 1 2451 2539 439681334 439681244 7.660000e-26 128.0
11 TraesCS1B01G365700 chr1A 81.149 801 107 25 1003 1796 538783714 538782951 1.040000e-168 603.0
12 TraesCS1B01G365700 chr4A 88.636 88 8 2 722 807 621774011 621774098 3.590000e-19 106.0
13 TraesCS1B01G365700 chr4A 85.526 76 7 2 57 128 743114570 743114495 2.810000e-10 76.8
14 TraesCS1B01G365700 chr7D 82.692 104 15 3 710 810 45538606 45538709 3.620000e-14 89.8
15 TraesCS1B01G365700 chr2A 89.855 69 6 1 758 825 465346030 465345962 1.300000e-13 87.9
16 TraesCS1B01G365700 chr5B 80.000 120 20 4 699 815 668466755 668466873 4.680000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G365700 chr1B 596928154 596930790 2636 False 4870.0 4870 100.0000 1 2637 1 chr1B.!!$F1 2636
1 TraesCS1B01G365700 chr1B 597068536 597069412 876 False 614.0 614 79.6760 887 1802 1 chr1B.!!$F2 915
2 TraesCS1B01G365700 chr1B 596999608 597000246 638 False 268.5 385 87.2605 1110 1801 2 chr1B.!!$F4 691
3 TraesCS1B01G365700 chr1D 439670356 439672021 1665 False 1157.5 1563 92.3640 133 1823 2 chr1D.!!$F4 1690
4 TraesCS1B01G365700 chr1D 439733191 439733962 771 False 597.0 597 80.8410 998 1802 1 chr1D.!!$F3 804
5 TraesCS1B01G365700 chr1D 439680627 439681193 566 False 584.0 584 85.3780 1818 2405 1 chr1D.!!$F1 587
6 TraesCS1B01G365700 chr1D 439726703 439727345 642 False 503.0 503 80.9870 1110 1796 1 chr1D.!!$F2 686
7 TraesCS1B01G365700 chr1A 538782951 538783714 763 True 603.0 603 81.1490 1003 1796 1 chr1A.!!$R1 793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.032267 GAGAATCCCGATGGACCGAC 59.968 60.0 0.0 0.0 45.58 4.79 F
751 765 0.038159 GCGGGGTGGATAGAAGATCG 60.038 60.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1356 0.170116 ACAAGCACAAACACACACGG 59.830 50.0 0.0 0.0 0.00 4.94 R
2466 2535 0.038709 CTACCTCTATCGCTGCTGGC 60.039 60.0 0.0 0.0 37.64 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.618442 GCTAAGGCTGCATCTTCTCT 57.382 50.000 0.50 0.00 35.22 3.10
21 22 2.916640 GCTAAGGCTGCATCTTCTCTT 58.083 47.619 0.50 0.00 35.22 2.85
22 23 2.613133 GCTAAGGCTGCATCTTCTCTTG 59.387 50.000 0.50 0.00 35.22 3.02
23 24 1.461559 AAGGCTGCATCTTCTCTTGC 58.538 50.000 0.50 0.00 39.33 4.01
24 25 0.327259 AGGCTGCATCTTCTCTTGCA 59.673 50.000 0.50 0.00 46.03 4.08
28 29 1.718396 TGCATCTTCTCTTGCAGTCG 58.282 50.000 0.00 0.00 43.54 4.18
29 30 1.005340 GCATCTTCTCTTGCAGTCGG 58.995 55.000 0.00 0.00 38.72 4.79
30 31 1.674221 GCATCTTCTCTTGCAGTCGGT 60.674 52.381 0.00 0.00 38.72 4.69
31 32 2.417379 GCATCTTCTCTTGCAGTCGGTA 60.417 50.000 0.00 0.00 38.72 4.02
32 33 3.443037 CATCTTCTCTTGCAGTCGGTAG 58.557 50.000 0.00 0.00 0.00 3.18
33 34 2.791655 TCTTCTCTTGCAGTCGGTAGA 58.208 47.619 0.00 0.00 0.00 2.59
43 44 1.080025 GTCGGTAGACACCTGTGGC 60.080 63.158 1.91 0.00 46.32 5.01
51 52 0.461961 GACACCTGTGGCTAGCTAGG 59.538 60.000 22.10 22.92 35.21 3.02
52 53 0.978146 ACACCTGTGGCTAGCTAGGG 60.978 60.000 25.95 21.17 34.60 3.53
53 54 0.687757 CACCTGTGGCTAGCTAGGGA 60.688 60.000 25.95 6.29 34.60 4.20
54 55 0.266152 ACCTGTGGCTAGCTAGGGAT 59.734 55.000 25.95 11.78 34.60 3.85
55 56 1.503784 ACCTGTGGCTAGCTAGGGATA 59.496 52.381 25.95 4.28 34.60 2.59
56 57 2.175202 CCTGTGGCTAGCTAGGGATAG 58.825 57.143 22.10 0.00 34.84 2.08
57 58 2.491825 CCTGTGGCTAGCTAGGGATAGT 60.492 54.545 22.10 0.00 34.29 2.12
58 59 3.235200 CTGTGGCTAGCTAGGGATAGTT 58.765 50.000 22.10 0.00 34.29 2.24
59 60 3.231818 TGTGGCTAGCTAGGGATAGTTC 58.768 50.000 22.10 2.72 34.29 3.01
60 61 2.563620 GTGGCTAGCTAGGGATAGTTCC 59.436 54.545 22.10 12.06 41.77 3.62
61 62 2.179204 TGGCTAGCTAGGGATAGTTCCA 59.821 50.000 22.10 14.41 44.60 3.53
62 63 3.240302 GGCTAGCTAGGGATAGTTCCAA 58.760 50.000 22.10 0.00 44.60 3.53
63 64 3.646637 GGCTAGCTAGGGATAGTTCCAAA 59.353 47.826 22.10 0.00 44.60 3.28
64 65 4.503469 GGCTAGCTAGGGATAGTTCCAAAC 60.503 50.000 22.10 0.15 44.60 2.93
65 66 4.101119 GCTAGCTAGGGATAGTTCCAAACA 59.899 45.833 22.10 0.00 44.60 2.83
66 67 5.221742 GCTAGCTAGGGATAGTTCCAAACAT 60.222 44.000 22.10 0.00 44.60 2.71
67 68 5.717119 AGCTAGGGATAGTTCCAAACATT 57.283 39.130 0.00 0.00 44.60 2.71
68 69 6.824958 AGCTAGGGATAGTTCCAAACATTA 57.175 37.500 0.00 0.00 44.60 1.90
69 70 7.394144 AGCTAGGGATAGTTCCAAACATTAT 57.606 36.000 0.00 0.00 44.60 1.28
70 71 7.816411 AGCTAGGGATAGTTCCAAACATTATT 58.184 34.615 0.00 0.00 44.60 1.40
71 72 8.282256 AGCTAGGGATAGTTCCAAACATTATTT 58.718 33.333 0.00 0.00 44.60 1.40
72 73 8.352942 GCTAGGGATAGTTCCAAACATTATTTG 58.647 37.037 0.00 0.00 44.60 2.32
73 74 9.408648 CTAGGGATAGTTCCAAACATTATTTGT 57.591 33.333 0.00 0.00 44.60 2.83
75 76 9.936329 AGGGATAGTTCCAAACATTATTTGTAT 57.064 29.630 0.00 0.00 44.60 2.29
81 82 9.308000 AGTTCCAAACATTATTTGTATTCCAGA 57.692 29.630 0.00 0.00 37.68 3.86
82 83 9.353999 GTTCCAAACATTATTTGTATTCCAGAC 57.646 33.333 0.00 0.00 37.68 3.51
83 84 7.757526 TCCAAACATTATTTGTATTCCAGACG 58.242 34.615 0.00 0.00 37.68 4.18
84 85 7.392113 TCCAAACATTATTTGTATTCCAGACGT 59.608 33.333 0.00 0.00 37.68 4.34
85 86 7.696453 CCAAACATTATTTGTATTCCAGACGTC 59.304 37.037 7.70 7.70 37.68 4.34
86 87 8.450964 CAAACATTATTTGTATTCCAGACGTCT 58.549 33.333 13.58 13.58 37.68 4.18
87 88 8.561738 AACATTATTTGTATTCCAGACGTCTT 57.438 30.769 17.26 3.70 37.68 3.01
88 89 7.974675 ACATTATTTGTATTCCAGACGTCTTG 58.025 34.615 17.26 13.45 36.57 3.02
89 90 4.946784 ATTTGTATTCCAGACGTCTTGC 57.053 40.909 17.26 5.69 0.00 4.01
90 91 3.394674 TTGTATTCCAGACGTCTTGCA 57.605 42.857 17.26 8.57 0.00 4.08
91 92 3.610040 TGTATTCCAGACGTCTTGCAT 57.390 42.857 17.26 11.25 0.00 3.96
92 93 3.261580 TGTATTCCAGACGTCTTGCATG 58.738 45.455 17.26 4.92 0.00 4.06
93 94 2.479566 ATTCCAGACGTCTTGCATGT 57.520 45.000 17.26 0.00 0.00 3.21
94 95 2.254546 TTCCAGACGTCTTGCATGTT 57.745 45.000 17.26 0.00 0.00 2.71
95 96 1.511850 TCCAGACGTCTTGCATGTTG 58.488 50.000 17.26 2.48 0.00 3.33
96 97 1.069978 TCCAGACGTCTTGCATGTTGA 59.930 47.619 17.26 0.00 0.00 3.18
97 98 1.872952 CCAGACGTCTTGCATGTTGAA 59.127 47.619 17.26 0.00 0.00 2.69
98 99 2.485426 CCAGACGTCTTGCATGTTGAAT 59.515 45.455 17.26 0.00 0.00 2.57
99 100 3.684305 CCAGACGTCTTGCATGTTGAATA 59.316 43.478 17.26 0.00 0.00 1.75
100 101 4.154015 CCAGACGTCTTGCATGTTGAATAA 59.846 41.667 17.26 0.00 0.00 1.40
101 102 5.334802 CCAGACGTCTTGCATGTTGAATAAA 60.335 40.000 17.26 0.00 0.00 1.40
102 103 6.317088 CAGACGTCTTGCATGTTGAATAAAT 58.683 36.000 17.26 0.00 0.00 1.40
103 104 6.803320 CAGACGTCTTGCATGTTGAATAAATT 59.197 34.615 17.26 0.00 0.00 1.82
104 105 7.007725 CAGACGTCTTGCATGTTGAATAAATTC 59.992 37.037 17.26 0.00 37.31 2.17
105 106 6.092748 ACGTCTTGCATGTTGAATAAATTCC 58.907 36.000 0.00 0.00 35.97 3.01
106 107 5.516339 CGTCTTGCATGTTGAATAAATTCCC 59.484 40.000 0.00 0.00 35.97 3.97
107 108 6.625740 CGTCTTGCATGTTGAATAAATTCCCT 60.626 38.462 0.00 0.00 35.97 4.20
108 109 7.415095 CGTCTTGCATGTTGAATAAATTCCCTA 60.415 37.037 0.00 0.00 35.97 3.53
109 110 7.917505 GTCTTGCATGTTGAATAAATTCCCTAG 59.082 37.037 0.00 0.00 35.97 3.02
110 111 7.615365 TCTTGCATGTTGAATAAATTCCCTAGT 59.385 33.333 0.00 0.00 35.97 2.57
111 112 7.716799 TGCATGTTGAATAAATTCCCTAGTT 57.283 32.000 0.00 0.00 35.97 2.24
112 113 7.771183 TGCATGTTGAATAAATTCCCTAGTTC 58.229 34.615 0.00 0.00 35.97 3.01
113 114 7.395772 TGCATGTTGAATAAATTCCCTAGTTCA 59.604 33.333 0.00 0.00 35.97 3.18
114 115 7.702348 GCATGTTGAATAAATTCCCTAGTTCAC 59.298 37.037 0.00 0.00 35.97 3.18
115 116 7.696992 TGTTGAATAAATTCCCTAGTTCACC 57.303 36.000 0.41 0.00 35.97 4.02
116 117 7.466804 TGTTGAATAAATTCCCTAGTTCACCT 58.533 34.615 0.41 0.00 35.97 4.00
117 118 7.610305 TGTTGAATAAATTCCCTAGTTCACCTC 59.390 37.037 0.41 0.00 35.97 3.85
118 119 7.265599 TGAATAAATTCCCTAGTTCACCTCA 57.734 36.000 0.41 0.00 35.97 3.86
119 120 7.695055 TGAATAAATTCCCTAGTTCACCTCAA 58.305 34.615 0.41 0.00 35.97 3.02
120 121 8.167392 TGAATAAATTCCCTAGTTCACCTCAAA 58.833 33.333 0.41 0.00 35.97 2.69
121 122 8.950007 AATAAATTCCCTAGTTCACCTCAAAA 57.050 30.769 0.00 0.00 0.00 2.44
122 123 8.950007 ATAAATTCCCTAGTTCACCTCAAAAA 57.050 30.769 0.00 0.00 0.00 1.94
167 168 1.452953 CGAGAATCCCGATGGACCGA 61.453 60.000 0.00 0.00 45.58 4.69
168 169 0.032267 GAGAATCCCGATGGACCGAC 59.968 60.000 0.00 0.00 45.58 4.79
272 273 3.900601 AGAATACGCCTTCTCTCATCCAT 59.099 43.478 0.00 0.00 29.38 3.41
299 300 4.763646 CCGCCGGCCCTCGTTTTA 62.764 66.667 23.46 0.00 37.11 1.52
336 342 4.063967 CGTGCTAGGGTGTGCGGA 62.064 66.667 0.00 0.00 0.00 5.54
374 380 1.153628 CCGGCCGTCTCTTCGAAAT 60.154 57.895 26.12 0.00 0.00 2.17
381 387 2.650765 CCGTCTCTTCGAAATATACGCG 59.349 50.000 3.53 3.53 0.00 6.01
382 388 3.538780 CGTCTCTTCGAAATATACGCGA 58.461 45.455 15.93 0.00 0.00 5.87
432 442 3.887621 ATTACTCCAGACGCTTGCTTA 57.112 42.857 0.00 0.00 0.00 3.09
442 452 3.006537 AGACGCTTGCTTAAGTTACCTGA 59.993 43.478 4.02 0.00 0.00 3.86
477 487 2.602217 CGCTTTGAAAGTAGCACGCTTT 60.602 45.455 6.81 0.80 38.69 3.51
490 500 1.016130 ACGCTTTCGATGCACTCCAG 61.016 55.000 10.74 0.00 39.41 3.86
563 573 2.157738 ACCTCGTAGTATATCCGGCAC 58.842 52.381 0.00 0.00 0.00 5.01
576 586 2.837291 GGCACAACTTGGCCCACA 60.837 61.111 0.00 0.00 45.27 4.17
609 622 0.387622 GGTCAAACGACGATGTCCGA 60.388 55.000 0.00 0.00 41.76 4.55
641 654 4.115287 CGTAAACAGCAAGCACGC 57.885 55.556 0.00 0.00 0.00 5.34
642 655 1.788203 CGTAAACAGCAAGCACGCG 60.788 57.895 3.53 3.53 36.85 6.01
643 656 1.567537 GTAAACAGCAAGCACGCGA 59.432 52.632 15.93 0.00 36.85 5.87
644 657 0.041663 GTAAACAGCAAGCACGCGAA 60.042 50.000 15.93 0.00 36.85 4.70
645 658 0.041663 TAAACAGCAAGCACGCGAAC 60.042 50.000 15.93 3.54 36.85 3.95
646 659 2.662091 AAACAGCAAGCACGCGAACC 62.662 55.000 15.93 0.00 36.85 3.62
647 660 3.648982 CAGCAAGCACGCGAACCA 61.649 61.111 15.93 0.00 36.85 3.67
648 661 2.669569 AGCAAGCACGCGAACCAT 60.670 55.556 15.93 0.00 36.85 3.55
649 662 2.255252 GCAAGCACGCGAACCATT 59.745 55.556 15.93 0.00 0.00 3.16
650 663 1.371635 GCAAGCACGCGAACCATTT 60.372 52.632 15.93 0.00 0.00 2.32
651 664 0.939106 GCAAGCACGCGAACCATTTT 60.939 50.000 15.93 0.00 0.00 1.82
652 665 1.664588 GCAAGCACGCGAACCATTTTA 60.665 47.619 15.93 0.00 0.00 1.52
653 666 2.656085 CAAGCACGCGAACCATTTTAA 58.344 42.857 15.93 0.00 0.00 1.52
654 667 3.241701 CAAGCACGCGAACCATTTTAAT 58.758 40.909 15.93 0.00 0.00 1.40
655 668 3.131240 AGCACGCGAACCATTTTAATC 57.869 42.857 15.93 0.00 0.00 1.75
656 669 2.486203 AGCACGCGAACCATTTTAATCA 59.514 40.909 15.93 0.00 0.00 2.57
657 670 3.057876 AGCACGCGAACCATTTTAATCAA 60.058 39.130 15.93 0.00 0.00 2.57
658 671 3.300590 GCACGCGAACCATTTTAATCAAG 59.699 43.478 15.93 0.00 0.00 3.02
659 672 4.472286 CACGCGAACCATTTTAATCAAGT 58.528 39.130 15.93 0.00 0.00 3.16
660 673 5.623335 CACGCGAACCATTTTAATCAAGTA 58.377 37.500 15.93 0.00 0.00 2.24
661 674 5.506832 CACGCGAACCATTTTAATCAAGTAC 59.493 40.000 15.93 0.00 0.00 2.73
662 675 5.410439 ACGCGAACCATTTTAATCAAGTACT 59.590 36.000 15.93 0.00 0.00 2.73
663 676 6.591062 ACGCGAACCATTTTAATCAAGTACTA 59.409 34.615 15.93 0.00 0.00 1.82
664 677 7.118101 ACGCGAACCATTTTAATCAAGTACTAA 59.882 33.333 15.93 0.00 0.00 2.24
665 678 8.120465 CGCGAACCATTTTAATCAAGTACTAAT 58.880 33.333 0.00 0.00 0.00 1.73
675 688 9.492973 TTTAATCAAGTACTAATATTACCCCGC 57.507 33.333 0.00 0.00 0.00 6.13
676 689 6.675413 ATCAAGTACTAATATTACCCCGCA 57.325 37.500 0.00 0.00 0.00 5.69
677 690 6.482898 TCAAGTACTAATATTACCCCGCAA 57.517 37.500 0.00 0.00 0.00 4.85
678 691 6.887013 TCAAGTACTAATATTACCCCGCAAA 58.113 36.000 0.00 0.00 0.00 3.68
679 692 7.337167 TCAAGTACTAATATTACCCCGCAAAA 58.663 34.615 0.00 0.00 0.00 2.44
680 693 7.828223 TCAAGTACTAATATTACCCCGCAAAAA 59.172 33.333 0.00 0.00 0.00 1.94
707 720 7.928307 AAAAAGCACTAGTATCATGATGTGT 57.072 32.000 18.72 8.38 0.00 3.72
708 721 7.545362 AAAAGCACTAGTATCATGATGTGTC 57.455 36.000 18.72 12.44 0.00 3.67
725 738 7.539436 TGATGTGTCAAACTAGCTAGAAGTAG 58.461 38.462 27.45 11.50 0.00 2.57
737 751 1.218316 GAAGTAGGTGAGTGCGGGG 59.782 63.158 0.00 0.00 0.00 5.73
743 757 2.363975 GGTGAGTGCGGGGTGGATA 61.364 63.158 0.00 0.00 0.00 2.59
749 763 0.759346 GTGCGGGGTGGATAGAAGAT 59.241 55.000 0.00 0.00 0.00 2.40
750 764 1.048601 TGCGGGGTGGATAGAAGATC 58.951 55.000 0.00 0.00 0.00 2.75
751 765 0.038159 GCGGGGTGGATAGAAGATCG 60.038 60.000 0.00 0.00 0.00 3.69
754 768 2.599677 GGGGTGGATAGAAGATCGACT 58.400 52.381 0.00 0.00 0.00 4.18
758 772 4.583489 GGGTGGATAGAAGATCGACTTGTA 59.417 45.833 5.20 6.16 39.13 2.41
760 774 5.278561 GGTGGATAGAAGATCGACTTGTAGG 60.279 48.000 5.20 0.00 37.68 3.18
762 776 5.071370 GGATAGAAGATCGACTTGTAGGGA 58.929 45.833 5.20 0.00 37.68 4.20
766 780 4.712337 AGAAGATCGACTTGTAGGGATTGT 59.288 41.667 5.20 0.00 39.13 2.71
775 789 6.594159 CGACTTGTAGGGATTGTTGATACTTT 59.406 38.462 0.00 0.00 0.00 2.66
780 794 9.575868 TTGTAGGGATTGTTGATACTTTTGTAA 57.424 29.630 0.00 0.00 38.54 2.41
781 795 9.575868 TGTAGGGATTGTTGATACTTTTGTAAA 57.424 29.630 0.00 0.00 38.54 2.01
825 843 7.905493 GCTTGCAAATAGAGTACTTTGATGTAC 59.095 37.037 8.83 0.00 42.09 2.90
827 845 8.479313 TGCAAATAGAGTACTTTGATGTACAG 57.521 34.615 8.83 0.00 43.65 2.74
828 846 8.094548 TGCAAATAGAGTACTTTGATGTACAGT 58.905 33.333 8.83 0.00 43.65 3.55
840 868 7.981789 ACTTTGATGTACAGTACTGGTATCATG 59.018 37.037 26.12 22.83 32.56 3.07
861 889 4.433615 TGCAATTGCTCAGCTAGTACTAC 58.566 43.478 29.37 0.00 42.66 2.73
865 894 3.646736 TGCTCAGCTAGTACTACCTCA 57.353 47.619 0.00 0.00 0.00 3.86
904 936 9.681062 AGTATGTACTATAAATTTGCAACCACT 57.319 29.630 0.00 0.00 34.13 4.00
921 953 5.140747 ACCACTACTAGCTTCTTGTCTTG 57.859 43.478 0.00 0.00 0.00 3.02
1024 1063 2.358957 CTGTGCTAGCCAAGTGCATTA 58.641 47.619 13.29 0.00 44.83 1.90
1047 1086 2.754658 TTCTCCCTCTCCGCCGTC 60.755 66.667 0.00 0.00 0.00 4.79
1064 1103 0.175531 GTCCTCCTCTCTCTGCTTGC 59.824 60.000 0.00 0.00 0.00 4.01
1146 1185 2.759114 CAGGGCATGGTCTGGTGT 59.241 61.111 0.00 0.00 0.00 4.16
1222 1264 3.916989 AGGTTAACTCTGATCCCAACCTT 59.083 43.478 5.42 0.00 42.30 3.50
1293 1341 2.094182 GTGCTCCTTCGTCCTTACATCA 60.094 50.000 0.00 0.00 0.00 3.07
1308 1356 3.526385 ACATCAATCGATACATTGCGC 57.474 42.857 0.00 0.00 34.26 6.09
1309 1357 2.224079 ACATCAATCGATACATTGCGCC 59.776 45.455 4.18 0.00 34.26 6.53
1487 1539 2.358369 TGGAGAGCTCGTCGTCGT 60.358 61.111 8.37 0.00 38.33 4.34
1652 1704 0.321387 CTGATCCATCCAGCCATCGG 60.321 60.000 0.00 0.00 0.00 4.18
1657 1709 1.224315 CATCCAGCCATCGGGAACA 59.776 57.895 0.00 0.00 39.95 3.18
1742 1802 4.696877 CGATTGATTAGCTGGGATATGCAA 59.303 41.667 0.00 0.00 0.00 4.08
1743 1803 5.163784 CGATTGATTAGCTGGGATATGCAAG 60.164 44.000 0.00 0.00 0.00 4.01
1744 1804 3.415212 TGATTAGCTGGGATATGCAAGC 58.585 45.455 15.49 15.49 35.86 4.01
1745 1805 3.181441 TGATTAGCTGGGATATGCAAGCA 60.181 43.478 23.93 6.25 38.14 3.91
1763 1823 1.808411 CACGGTGCTGTAAGGTTGAT 58.192 50.000 0.00 0.00 0.00 2.57
1764 1824 1.732259 CACGGTGCTGTAAGGTTGATC 59.268 52.381 0.00 0.00 0.00 2.92
1765 1825 0.999406 CGGTGCTGTAAGGTTGATCG 59.001 55.000 0.00 0.00 0.00 3.69
1843 1907 8.132995 GGTTTTGTAAGCTTCTTTAGTTAGCAA 58.867 33.333 0.00 0.00 37.37 3.91
1857 1921 7.753309 TTAGTTAGCAACAACATACATGGTT 57.247 32.000 0.00 0.00 0.00 3.67
1890 1954 6.962686 TCGAATATGAATTGAGGAATGCAAG 58.037 36.000 0.00 0.00 30.35 4.01
1905 1969 2.991250 TGCAAGTCCTGAAGCTATTCC 58.009 47.619 0.00 0.00 34.28 3.01
1909 1973 2.122768 AGTCCTGAAGCTATTCCAGGG 58.877 52.381 18.40 4.49 35.82 4.45
1926 1990 0.831307 GGGTGCCAGGTTAGTCCTAG 59.169 60.000 0.00 0.00 46.24 3.02
1932 1996 4.337836 GTGCCAGGTTAGTCCTAGTACTAC 59.662 50.000 0.00 0.00 46.24 2.73
1933 1997 3.888323 GCCAGGTTAGTCCTAGTACTACC 59.112 52.174 0.00 0.00 46.24 3.18
1934 1998 4.629694 GCCAGGTTAGTCCTAGTACTACCA 60.630 50.000 10.58 0.00 46.24 3.25
1935 1999 5.703310 CCAGGTTAGTCCTAGTACTACCAT 58.297 45.833 10.58 0.00 46.24 3.55
1938 2002 7.949006 CCAGGTTAGTCCTAGTACTACCATAAT 59.051 40.741 10.58 0.00 46.24 1.28
1946 2012 9.080097 GTCCTAGTACTACCATAATGAACATCT 57.920 37.037 0.00 0.00 0.00 2.90
1991 2057 1.672854 CGACGGACCTATCTGGCCAA 61.673 60.000 7.01 0.00 35.53 4.52
1992 2058 0.179081 GACGGACCTATCTGGCCAAC 60.179 60.000 7.01 0.00 40.22 3.77
1993 2059 0.907704 ACGGACCTATCTGGCCAACA 60.908 55.000 7.01 0.00 40.22 3.33
1995 2061 1.541233 CGGACCTATCTGGCCAACATC 60.541 57.143 7.01 0.00 40.22 3.06
1996 2062 1.490490 GGACCTATCTGGCCAACATCA 59.510 52.381 7.01 0.00 40.22 3.07
1997 2063 2.092429 GGACCTATCTGGCCAACATCAA 60.092 50.000 7.01 0.00 40.22 2.57
1998 2064 3.435601 GGACCTATCTGGCCAACATCAAT 60.436 47.826 7.01 0.00 40.22 2.57
1999 2065 4.210331 GACCTATCTGGCCAACATCAATT 58.790 43.478 7.01 0.00 40.22 2.32
2000 2066 4.613437 ACCTATCTGGCCAACATCAATTT 58.387 39.130 7.01 0.00 40.22 1.82
2001 2067 5.025453 ACCTATCTGGCCAACATCAATTTT 58.975 37.500 7.01 0.00 40.22 1.82
2002 2068 5.484998 ACCTATCTGGCCAACATCAATTTTT 59.515 36.000 7.01 0.00 40.22 1.94
2059 2125 6.924989 AATTTCAGTAATTTGGGTGGGTACCA 60.925 38.462 15.35 0.00 45.56 3.25
2105 2171 6.409524 TTGAGCCAGATTCAAACTCATTTT 57.590 33.333 0.00 0.00 37.24 1.82
2110 2176 8.593492 AGCCAGATTCAAACTCATTTTAAAAC 57.407 30.769 1.97 0.00 0.00 2.43
2180 2246 5.841957 ATCCAGATCCAAAAGAATTTCCG 57.158 39.130 0.00 0.00 37.28 4.30
2187 2253 8.992073 CAGATCCAAAAGAATTTCCGAAAATTT 58.008 29.630 0.00 0.00 43.48 1.82
2191 2257 6.632434 CCAAAAGAATTTCCGAAAATTTGCAC 59.368 34.615 0.00 0.00 43.48 4.57
2207 2273 3.144657 TGCACATTTCAGTGAGGTCAT 57.855 42.857 0.00 0.00 42.05 3.06
2209 2275 4.650734 TGCACATTTCAGTGAGGTCATAA 58.349 39.130 0.00 0.00 42.05 1.90
2211 2277 5.711506 TGCACATTTCAGTGAGGTCATAATT 59.288 36.000 0.00 0.00 42.05 1.40
2251 2320 6.543430 TTAAAACCTTATGCATGCTTCCAT 57.457 33.333 20.33 6.35 0.00 3.41
2263 2332 3.488778 TGCTTCCATGTGGCAATTTTT 57.511 38.095 0.00 0.00 32.79 1.94
2280 2349 7.712264 CAATTTTTGCATAACTCACCTTCAA 57.288 32.000 0.00 0.00 0.00 2.69
2284 2353 6.463995 TTTGCATAACTCACCTTCAAAAGT 57.536 33.333 0.00 0.00 0.00 2.66
2324 2393 6.140303 GTGATCCTTCACCTACATTACGTA 57.860 41.667 0.00 0.00 45.45 3.57
2344 2413 0.755686 ATCTGCCCGACCTTCATCTC 59.244 55.000 0.00 0.00 0.00 2.75
2353 2422 2.003301 GACCTTCATCTCCACTTTCGC 58.997 52.381 0.00 0.00 0.00 4.70
2394 2463 1.145156 GCCAACCCAACCCAAACAC 59.855 57.895 0.00 0.00 0.00 3.32
2396 2465 1.439644 CAACCCAACCCAAACACGG 59.560 57.895 0.00 0.00 0.00 4.94
2414 2483 4.974721 CAACGTGGGGGCCAAGCT 62.975 66.667 4.39 0.00 36.49 3.74
2415 2484 3.253838 AACGTGGGGGCCAAGCTA 61.254 61.111 4.39 0.00 36.49 3.32
2416 2485 2.836187 AACGTGGGGGCCAAGCTAA 61.836 57.895 4.39 0.00 36.49 3.09
2417 2486 2.150014 AACGTGGGGGCCAAGCTAAT 62.150 55.000 4.39 0.00 36.49 1.73
2418 2487 1.379843 CGTGGGGGCCAAGCTAATT 60.380 57.895 4.39 0.00 34.18 1.40
2419 2488 1.384222 CGTGGGGGCCAAGCTAATTC 61.384 60.000 4.39 0.00 34.18 2.17
2420 2489 0.033109 GTGGGGGCCAAGCTAATTCT 60.033 55.000 4.39 0.00 34.18 2.40
2421 2490 0.709992 TGGGGGCCAAGCTAATTCTT 59.290 50.000 4.39 0.00 0.00 2.52
2422 2491 1.114627 GGGGGCCAAGCTAATTCTTG 58.885 55.000 4.39 0.88 42.23 3.02
2440 2509 5.623956 TCTTGGAGAAGAAACCAGTAACA 57.376 39.130 0.00 0.00 35.14 2.41
2441 2510 6.187727 TCTTGGAGAAGAAACCAGTAACAT 57.812 37.500 0.00 0.00 35.14 2.71
2442 2511 7.311092 TCTTGGAGAAGAAACCAGTAACATA 57.689 36.000 0.00 0.00 35.14 2.29
2443 2512 7.918076 TCTTGGAGAAGAAACCAGTAACATAT 58.082 34.615 0.00 0.00 35.14 1.78
2444 2513 9.042450 TCTTGGAGAAGAAACCAGTAACATATA 57.958 33.333 0.00 0.00 35.14 0.86
2445 2514 9.838339 CTTGGAGAAGAAACCAGTAACATATAT 57.162 33.333 0.00 0.00 37.48 0.86
2446 2515 9.613428 TTGGAGAAGAAACCAGTAACATATATG 57.387 33.333 11.29 11.29 37.48 1.78
2447 2516 8.768397 TGGAGAAGAAACCAGTAACATATATGT 58.232 33.333 12.75 12.75 44.20 2.29
2448 2517 9.046296 GGAGAAGAAACCAGTAACATATATGTG 57.954 37.037 18.94 8.63 41.61 3.21
2449 2518 8.964476 AGAAGAAACCAGTAACATATATGTGG 57.036 34.615 18.94 16.81 41.61 4.17
2450 2519 8.548877 AGAAGAAACCAGTAACATATATGTGGT 58.451 33.333 18.94 17.42 41.61 4.16
2451 2520 8.732746 AAGAAACCAGTAACATATATGTGGTC 57.267 34.615 18.94 11.85 41.61 4.02
2452 2521 7.280356 AGAAACCAGTAACATATATGTGGTCC 58.720 38.462 18.94 14.93 41.61 4.46
2453 2522 5.562298 ACCAGTAACATATATGTGGTCCC 57.438 43.478 18.94 5.89 41.61 4.46
2454 2523 4.349930 ACCAGTAACATATATGTGGTCCCC 59.650 45.833 18.94 4.32 41.61 4.81
2455 2524 4.349636 CCAGTAACATATATGTGGTCCCCA 59.650 45.833 18.94 0.00 41.61 4.96
2456 2525 5.163141 CCAGTAACATATATGTGGTCCCCAA 60.163 44.000 18.94 0.00 41.61 4.12
2457 2526 6.361433 CAGTAACATATATGTGGTCCCCAAA 58.639 40.000 18.94 0.00 41.61 3.28
2458 2527 6.486657 CAGTAACATATATGTGGTCCCCAAAG 59.513 42.308 18.94 0.00 41.61 2.77
2459 2528 3.832527 ACATATATGTGGTCCCCAAAGC 58.167 45.455 17.60 0.00 40.03 3.51
2460 2529 3.204158 ACATATATGTGGTCCCCAAAGCA 59.796 43.478 17.60 0.00 40.03 3.91
2461 2530 4.140947 ACATATATGTGGTCCCCAAAGCAT 60.141 41.667 17.60 0.00 40.03 3.79
2462 2531 2.142356 TATGTGGTCCCCAAAGCATG 57.858 50.000 0.00 0.00 34.18 4.06
2463 2532 1.259840 ATGTGGTCCCCAAAGCATGC 61.260 55.000 10.51 10.51 34.18 4.06
2464 2533 2.283821 TGGTCCCCAAAGCATGCC 60.284 61.111 15.66 0.00 0.00 4.40
2465 2534 2.283821 GGTCCCCAAAGCATGCCA 60.284 61.111 15.66 0.00 0.00 4.92
2466 2535 2.353610 GGTCCCCAAAGCATGCCAG 61.354 63.158 15.66 4.21 0.00 4.85
2467 2536 2.681064 TCCCCAAAGCATGCCAGC 60.681 61.111 15.66 0.00 0.00 4.85
2468 2537 3.777910 CCCCAAAGCATGCCAGCC 61.778 66.667 15.66 0.00 34.23 4.85
2469 2538 2.998480 CCCAAAGCATGCCAGCCA 60.998 61.111 15.66 0.00 34.23 4.75
2470 2539 2.577059 CCAAAGCATGCCAGCCAG 59.423 61.111 15.66 0.00 34.23 4.85
2471 2540 2.125673 CAAAGCATGCCAGCCAGC 60.126 61.111 15.66 0.00 34.23 4.85
2483 2552 2.818132 GCCAGCAGCGATAGAGGT 59.182 61.111 0.00 0.00 39.76 3.85
2484 2553 2.041976 GCCAGCAGCGATAGAGGTA 58.958 57.895 0.00 0.00 39.76 3.08
2485 2554 0.038709 GCCAGCAGCGATAGAGGTAG 60.039 60.000 0.00 0.00 39.76 3.18
2486 2555 0.600557 CCAGCAGCGATAGAGGTAGG 59.399 60.000 0.00 0.00 39.76 3.18
2487 2556 1.610363 CAGCAGCGATAGAGGTAGGA 58.390 55.000 0.00 0.00 39.76 2.94
2488 2557 1.539388 CAGCAGCGATAGAGGTAGGAG 59.461 57.143 0.00 0.00 39.76 3.69
2489 2558 1.422024 AGCAGCGATAGAGGTAGGAGA 59.578 52.381 0.00 0.00 39.76 3.71
2490 2559 2.158593 AGCAGCGATAGAGGTAGGAGAA 60.159 50.000 0.00 0.00 39.76 2.87
2491 2560 2.623889 GCAGCGATAGAGGTAGGAGAAA 59.376 50.000 0.00 0.00 39.76 2.52
2492 2561 3.305064 GCAGCGATAGAGGTAGGAGAAAG 60.305 52.174 0.00 0.00 39.76 2.62
2493 2562 2.888414 AGCGATAGAGGTAGGAGAAAGC 59.112 50.000 0.00 0.00 39.76 3.51
2494 2563 2.350964 GCGATAGAGGTAGGAGAAAGCG 60.351 54.545 0.00 0.00 39.76 4.68
2495 2564 2.226912 CGATAGAGGTAGGAGAAAGCGG 59.773 54.545 0.00 0.00 39.76 5.52
2496 2565 1.400737 TAGAGGTAGGAGAAAGCGGC 58.599 55.000 0.00 0.00 0.00 6.53
2497 2566 0.614979 AGAGGTAGGAGAAAGCGGCA 60.615 55.000 1.45 0.00 0.00 5.69
2498 2567 0.179097 GAGGTAGGAGAAAGCGGCAG 60.179 60.000 1.45 0.00 0.00 4.85
2499 2568 1.815840 GGTAGGAGAAAGCGGCAGC 60.816 63.158 0.00 0.00 45.58 5.25
2510 2579 4.389576 CGGCAGCAAGAACACGCC 62.390 66.667 0.00 0.00 39.45 5.68
2511 2580 2.980233 GGCAGCAAGAACACGCCT 60.980 61.111 0.00 0.00 39.73 5.52
2512 2581 2.253452 GCAGCAAGAACACGCCTG 59.747 61.111 0.00 0.00 0.00 4.85
2513 2582 2.253758 GCAGCAAGAACACGCCTGA 61.254 57.895 0.00 0.00 0.00 3.86
2514 2583 1.864862 CAGCAAGAACACGCCTGAG 59.135 57.895 0.00 0.00 0.00 3.35
2515 2584 1.963338 AGCAAGAACACGCCTGAGC 60.963 57.895 0.00 0.00 0.00 4.26
2516 2585 2.253758 GCAAGAACACGCCTGAGCA 61.254 57.895 0.00 0.00 39.83 4.26
2517 2586 1.785041 GCAAGAACACGCCTGAGCAA 61.785 55.000 0.00 0.00 39.83 3.91
2518 2587 0.236711 CAAGAACACGCCTGAGCAAG 59.763 55.000 0.00 0.00 39.83 4.01
2526 2595 3.333219 CCTGAGCAAGGGGAGGCA 61.333 66.667 0.00 0.00 43.15 4.75
2527 2596 2.045536 CTGAGCAAGGGGAGGCAC 60.046 66.667 0.00 0.00 0.00 5.01
2528 2597 2.853542 TGAGCAAGGGGAGGCACA 60.854 61.111 0.00 0.00 0.00 4.57
2529 2598 2.416107 CTGAGCAAGGGGAGGCACAA 62.416 60.000 0.00 0.00 30.47 3.33
2530 2599 1.676967 GAGCAAGGGGAGGCACAAG 60.677 63.158 0.00 0.00 0.00 3.16
2531 2600 2.129555 GAGCAAGGGGAGGCACAAGA 62.130 60.000 0.00 0.00 0.00 3.02
2532 2601 1.000396 GCAAGGGGAGGCACAAGAT 60.000 57.895 0.00 0.00 0.00 2.40
2533 2602 0.255890 GCAAGGGGAGGCACAAGATA 59.744 55.000 0.00 0.00 0.00 1.98
2534 2603 1.340991 GCAAGGGGAGGCACAAGATAA 60.341 52.381 0.00 0.00 0.00 1.75
2535 2604 2.648059 CAAGGGGAGGCACAAGATAAG 58.352 52.381 0.00 0.00 0.00 1.73
2536 2605 0.548510 AGGGGAGGCACAAGATAAGC 59.451 55.000 0.00 0.00 0.00 3.09
2537 2606 0.815615 GGGGAGGCACAAGATAAGCG 60.816 60.000 0.00 0.00 0.00 4.68
2538 2607 1.440145 GGGAGGCACAAGATAAGCGC 61.440 60.000 0.00 0.00 0.00 5.92
2539 2608 0.744414 GGAGGCACAAGATAAGCGCA 60.744 55.000 11.47 0.00 0.00 6.09
2540 2609 1.303309 GAGGCACAAGATAAGCGCAT 58.697 50.000 11.47 0.00 0.00 4.73
2541 2610 2.483876 GAGGCACAAGATAAGCGCATA 58.516 47.619 11.47 0.97 0.00 3.14
2542 2611 2.872245 GAGGCACAAGATAAGCGCATAA 59.128 45.455 11.47 0.00 0.00 1.90
2543 2612 2.614057 AGGCACAAGATAAGCGCATAAC 59.386 45.455 11.47 0.00 0.00 1.89
2544 2613 2.287009 GGCACAAGATAAGCGCATAACC 60.287 50.000 11.47 0.00 0.00 2.85
2545 2614 2.614057 GCACAAGATAAGCGCATAACCT 59.386 45.455 11.47 0.74 0.00 3.50
2546 2615 3.303395 GCACAAGATAAGCGCATAACCTC 60.303 47.826 11.47 0.00 0.00 3.85
2547 2616 3.871006 CACAAGATAAGCGCATAACCTCA 59.129 43.478 11.47 0.00 0.00 3.86
2548 2617 4.025396 CACAAGATAAGCGCATAACCTCAG 60.025 45.833 11.47 3.69 0.00 3.35
2549 2618 2.760374 AGATAAGCGCATAACCTCAGC 58.240 47.619 11.47 0.00 0.00 4.26
2550 2619 2.103094 AGATAAGCGCATAACCTCAGCA 59.897 45.455 11.47 0.00 0.00 4.41
2551 2620 2.394930 TAAGCGCATAACCTCAGCAA 57.605 45.000 11.47 0.00 0.00 3.91
2552 2621 1.089920 AAGCGCATAACCTCAGCAAG 58.910 50.000 11.47 0.00 0.00 4.01
2553 2622 0.250234 AGCGCATAACCTCAGCAAGA 59.750 50.000 11.47 0.00 0.00 3.02
2554 2623 1.086696 GCGCATAACCTCAGCAAGAA 58.913 50.000 0.30 0.00 0.00 2.52
2555 2624 1.202076 GCGCATAACCTCAGCAAGAAC 60.202 52.381 0.30 0.00 0.00 3.01
2556 2625 2.350522 CGCATAACCTCAGCAAGAACT 58.649 47.619 0.00 0.00 0.00 3.01
2557 2626 2.744202 CGCATAACCTCAGCAAGAACTT 59.256 45.455 0.00 0.00 0.00 2.66
2558 2627 3.425359 CGCATAACCTCAGCAAGAACTTG 60.425 47.826 9.82 9.82 43.14 3.16
2559 2628 3.119708 GCATAACCTCAGCAAGAACTTGG 60.120 47.826 14.95 2.29 40.74 3.61
2568 2637 3.754188 GCAAGAACTTGGTGAGCTATG 57.246 47.619 14.95 0.00 40.74 2.23
2569 2638 3.077359 GCAAGAACTTGGTGAGCTATGT 58.923 45.455 14.95 0.00 40.74 2.29
2570 2639 3.503748 GCAAGAACTTGGTGAGCTATGTT 59.496 43.478 14.95 0.00 40.74 2.71
2571 2640 4.695455 GCAAGAACTTGGTGAGCTATGTTA 59.305 41.667 14.95 0.00 40.74 2.41
2572 2641 5.163814 GCAAGAACTTGGTGAGCTATGTTAG 60.164 44.000 14.95 0.00 40.74 2.34
2573 2642 5.163814 CAAGAACTTGGTGAGCTATGTTAGC 60.164 44.000 6.66 0.00 42.99 3.09
2574 2643 8.052930 CAAGAACTTGGTGAGCTATGTTAGCC 62.053 46.154 6.66 0.00 43.32 3.93
2582 2651 2.638480 GCTATGTTAGCCATGGACCA 57.362 50.000 18.40 5.70 45.95 4.02
2583 2652 2.222027 GCTATGTTAGCCATGGACCAC 58.778 52.381 18.40 8.33 45.95 4.16
2584 2653 2.158755 GCTATGTTAGCCATGGACCACT 60.159 50.000 18.40 5.26 45.95 4.00
2585 2654 2.717639 ATGTTAGCCATGGACCACTC 57.282 50.000 18.40 0.00 30.69 3.51
2586 2655 1.656587 TGTTAGCCATGGACCACTCT 58.343 50.000 18.40 4.01 0.00 3.24
2587 2656 2.827755 TGTTAGCCATGGACCACTCTA 58.172 47.619 18.40 2.88 0.00 2.43
2588 2657 3.178046 TGTTAGCCATGGACCACTCTAA 58.822 45.455 18.40 9.49 0.00 2.10
2589 2658 3.055385 TGTTAGCCATGGACCACTCTAAC 60.055 47.826 18.40 20.51 37.47 2.34
2590 2659 1.656587 AGCCATGGACCACTCTAACA 58.343 50.000 18.40 0.00 0.00 2.41
2591 2660 1.279271 AGCCATGGACCACTCTAACAC 59.721 52.381 18.40 0.00 0.00 3.32
2592 2661 1.279271 GCCATGGACCACTCTAACACT 59.721 52.381 18.40 0.00 0.00 3.55
2593 2662 2.936993 GCCATGGACCACTCTAACACTG 60.937 54.545 18.40 0.00 0.00 3.66
2594 2663 2.567169 CCATGGACCACTCTAACACTGA 59.433 50.000 5.56 0.00 0.00 3.41
2595 2664 3.007940 CCATGGACCACTCTAACACTGAA 59.992 47.826 5.56 0.00 0.00 3.02
2596 2665 4.504864 CCATGGACCACTCTAACACTGAAA 60.505 45.833 5.56 0.00 0.00 2.69
2597 2666 4.336889 TGGACCACTCTAACACTGAAAG 57.663 45.455 0.00 0.00 42.29 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.327259 TGCAAGAGAAGATGCAGCCT 59.673 50.000 0.00 0.00 46.87 4.58
6 7 2.864114 TGCAAGAGAAGATGCAGCC 58.136 52.632 0.00 0.00 46.87 4.85
10 11 1.005340 CCGACTGCAAGAGAAGATGC 58.995 55.000 0.00 0.00 42.86 3.91
11 12 2.376808 ACCGACTGCAAGAGAAGATG 57.623 50.000 0.00 0.00 37.43 2.90
12 13 3.129638 GTCTACCGACTGCAAGAGAAGAT 59.870 47.826 0.00 0.00 37.43 2.40
13 14 2.488545 GTCTACCGACTGCAAGAGAAGA 59.511 50.000 0.00 0.00 37.43 2.87
14 15 2.229062 TGTCTACCGACTGCAAGAGAAG 59.771 50.000 0.00 0.00 40.86 2.85
15 16 2.030185 GTGTCTACCGACTGCAAGAGAA 60.030 50.000 0.00 0.00 40.86 2.87
16 17 1.540267 GTGTCTACCGACTGCAAGAGA 59.460 52.381 0.00 0.00 40.86 3.10
17 18 1.402984 GGTGTCTACCGACTGCAAGAG 60.403 57.143 0.00 0.00 40.86 2.85
18 19 0.601558 GGTGTCTACCGACTGCAAGA 59.398 55.000 0.00 0.00 40.86 3.02
19 20 3.123674 GGTGTCTACCGACTGCAAG 57.876 57.895 0.00 0.00 40.86 4.01
29 30 1.187087 AGCTAGCCACAGGTGTCTAC 58.813 55.000 12.13 0.00 0.00 2.59
30 31 2.656002 CTAGCTAGCCACAGGTGTCTA 58.344 52.381 12.13 0.00 0.00 2.59
31 32 1.479709 CTAGCTAGCCACAGGTGTCT 58.520 55.000 12.13 0.00 0.00 3.41
32 33 0.461961 CCTAGCTAGCCACAGGTGTC 59.538 60.000 15.74 0.00 0.00 3.67
33 34 0.978146 CCCTAGCTAGCCACAGGTGT 60.978 60.000 15.74 1.27 0.00 4.16
34 35 0.687757 TCCCTAGCTAGCCACAGGTG 60.688 60.000 15.74 14.21 0.00 4.00
35 36 0.266152 ATCCCTAGCTAGCCACAGGT 59.734 55.000 15.74 6.08 0.00 4.00
36 37 2.175202 CTATCCCTAGCTAGCCACAGG 58.825 57.143 15.74 15.17 0.00 4.00
37 38 2.883026 ACTATCCCTAGCTAGCCACAG 58.117 52.381 15.74 11.27 0.00 3.66
38 39 3.231818 GAACTATCCCTAGCTAGCCACA 58.768 50.000 15.74 0.00 0.00 4.17
39 40 2.563620 GGAACTATCCCTAGCTAGCCAC 59.436 54.545 15.74 0.78 40.10 5.01
40 41 2.179204 TGGAACTATCCCTAGCTAGCCA 59.821 50.000 15.74 11.32 45.95 4.75
41 42 2.890814 TGGAACTATCCCTAGCTAGCC 58.109 52.381 15.74 8.83 45.95 3.93
42 43 4.101119 TGTTTGGAACTATCCCTAGCTAGC 59.899 45.833 15.74 6.62 45.95 3.42
43 44 5.871396 TGTTTGGAACTATCCCTAGCTAG 57.129 43.478 14.20 14.20 45.95 3.42
44 45 6.824958 AATGTTTGGAACTATCCCTAGCTA 57.175 37.500 0.00 0.00 45.95 3.32
45 46 5.717119 AATGTTTGGAACTATCCCTAGCT 57.283 39.130 0.00 0.00 45.95 3.32
46 47 8.352942 CAAATAATGTTTGGAACTATCCCTAGC 58.647 37.037 0.00 0.00 45.95 3.42
47 48 9.408648 ACAAATAATGTTTGGAACTATCCCTAG 57.591 33.333 7.36 0.00 41.80 3.02
49 50 9.936329 ATACAAATAATGTTTGGAACTATCCCT 57.064 29.630 7.36 0.00 43.31 4.20
55 56 9.308000 TCTGGAATACAAATAATGTTTGGAACT 57.692 29.630 7.36 0.00 43.63 3.01
56 57 9.353999 GTCTGGAATACAAATAATGTTTGGAAC 57.646 33.333 7.36 0.00 43.63 3.62
57 58 8.240682 CGTCTGGAATACAAATAATGTTTGGAA 58.759 33.333 7.36 0.00 43.63 3.53
58 59 7.392113 ACGTCTGGAATACAAATAATGTTTGGA 59.608 33.333 7.36 0.00 43.63 3.53
59 60 7.535139 ACGTCTGGAATACAAATAATGTTTGG 58.465 34.615 7.36 0.00 43.63 3.28
60 61 8.450964 AGACGTCTGGAATACAAATAATGTTTG 58.549 33.333 19.30 0.84 43.63 2.93
61 62 8.561738 AGACGTCTGGAATACAAATAATGTTT 57.438 30.769 19.30 0.00 43.63 2.83
62 63 8.450964 CAAGACGTCTGGAATACAAATAATGTT 58.549 33.333 20.85 0.00 43.63 2.71
63 64 7.414098 GCAAGACGTCTGGAATACAAATAATGT 60.414 37.037 24.45 0.00 46.36 2.71
64 65 6.907212 GCAAGACGTCTGGAATACAAATAATG 59.093 38.462 24.45 11.50 0.00 1.90
65 66 6.597672 TGCAAGACGTCTGGAATACAAATAAT 59.402 34.615 24.45 0.00 0.00 1.28
66 67 5.935206 TGCAAGACGTCTGGAATACAAATAA 59.065 36.000 24.45 0.00 0.00 1.40
67 68 5.483811 TGCAAGACGTCTGGAATACAAATA 58.516 37.500 24.45 0.00 0.00 1.40
68 69 4.323417 TGCAAGACGTCTGGAATACAAAT 58.677 39.130 24.45 0.00 0.00 2.32
69 70 3.734463 TGCAAGACGTCTGGAATACAAA 58.266 40.909 24.45 0.00 0.00 2.83
70 71 3.394674 TGCAAGACGTCTGGAATACAA 57.605 42.857 24.45 0.00 0.00 2.41
71 72 3.261580 CATGCAAGACGTCTGGAATACA 58.738 45.455 24.45 12.00 0.00 2.29
72 73 3.262420 ACATGCAAGACGTCTGGAATAC 58.738 45.455 24.45 6.25 0.00 1.89
73 74 3.610040 ACATGCAAGACGTCTGGAATA 57.390 42.857 24.45 9.14 0.00 1.75
74 75 2.479566 ACATGCAAGACGTCTGGAAT 57.520 45.000 24.45 16.44 0.00 3.01
75 76 1.872952 CAACATGCAAGACGTCTGGAA 59.127 47.619 24.45 14.52 0.00 3.53
76 77 1.069978 TCAACATGCAAGACGTCTGGA 59.930 47.619 24.45 16.55 0.00 3.86
77 78 1.511850 TCAACATGCAAGACGTCTGG 58.488 50.000 20.85 18.34 0.00 3.86
78 79 3.818961 ATTCAACATGCAAGACGTCTG 57.181 42.857 20.85 14.16 0.00 3.51
79 80 5.940192 TTTATTCAACATGCAAGACGTCT 57.060 34.783 13.58 13.58 0.00 4.18
80 81 6.251376 GGAATTTATTCAACATGCAAGACGTC 59.749 38.462 7.70 7.70 38.53 4.34
81 82 6.092748 GGAATTTATTCAACATGCAAGACGT 58.907 36.000 0.00 0.00 38.53 4.34
82 83 5.516339 GGGAATTTATTCAACATGCAAGACG 59.484 40.000 0.00 0.00 38.53 4.18
83 84 6.633856 AGGGAATTTATTCAACATGCAAGAC 58.366 36.000 0.00 0.00 38.53 3.01
84 85 6.855763 AGGGAATTTATTCAACATGCAAGA 57.144 33.333 0.00 0.00 38.53 3.02
85 86 7.775120 ACTAGGGAATTTATTCAACATGCAAG 58.225 34.615 0.00 0.00 38.53 4.01
86 87 7.716799 ACTAGGGAATTTATTCAACATGCAA 57.283 32.000 0.00 0.00 38.53 4.08
87 88 7.395772 TGAACTAGGGAATTTATTCAACATGCA 59.604 33.333 4.97 0.00 38.53 3.96
88 89 7.702348 GTGAACTAGGGAATTTATTCAACATGC 59.298 37.037 4.97 0.00 38.53 4.06
89 90 8.190784 GGTGAACTAGGGAATTTATTCAACATG 58.809 37.037 4.97 0.00 38.53 3.21
90 91 8.116026 AGGTGAACTAGGGAATTTATTCAACAT 58.884 33.333 6.35 0.00 36.45 2.71
91 92 7.466804 AGGTGAACTAGGGAATTTATTCAACA 58.533 34.615 6.35 0.00 36.45 3.33
92 93 7.610305 TGAGGTGAACTAGGGAATTTATTCAAC 59.390 37.037 4.97 0.00 38.53 3.18
93 94 7.695055 TGAGGTGAACTAGGGAATTTATTCAA 58.305 34.615 4.97 0.00 38.53 2.69
94 95 7.265599 TGAGGTGAACTAGGGAATTTATTCA 57.734 36.000 4.97 0.00 38.53 2.57
95 96 8.575649 TTTGAGGTGAACTAGGGAATTTATTC 57.424 34.615 0.00 0.00 36.08 1.75
96 97 8.950007 TTTTGAGGTGAACTAGGGAATTTATT 57.050 30.769 0.00 0.00 0.00 1.40
97 98 8.950007 TTTTTGAGGTGAACTAGGGAATTTAT 57.050 30.769 0.00 0.00 0.00 1.40
128 129 7.156876 TCTCGGAATGTATGCTTTCATTTTT 57.843 32.000 10.76 0.00 34.92 1.94
129 130 6.757897 TCTCGGAATGTATGCTTTCATTTT 57.242 33.333 10.76 0.00 34.92 1.82
130 131 6.757897 TTCTCGGAATGTATGCTTTCATTT 57.242 33.333 10.76 0.00 34.92 2.32
131 132 6.016777 GGATTCTCGGAATGTATGCTTTCATT 60.017 38.462 10.76 4.44 37.04 2.57
251 252 3.735237 TGGATGAGAGAAGGCGTATTC 57.265 47.619 0.00 0.00 0.00 1.75
256 257 0.755079 TGGATGGATGAGAGAAGGCG 59.245 55.000 0.00 0.00 0.00 5.52
336 342 1.392589 CAGTTTGCAGTGGTGGAGTT 58.607 50.000 0.00 0.00 0.00 3.01
382 388 9.981114 TGATCATCTTAATTCACATACACGTAT 57.019 29.630 0.00 0.00 0.00 3.06
419 429 3.724295 GGTAACTTAAGCAAGCGTCTG 57.276 47.619 1.29 0.00 34.94 3.51
442 452 2.408333 AAGCGCTGTCACTTGCTTT 58.592 47.368 12.58 0.00 44.74 3.51
477 487 1.078918 CCTTGCTGGAGTGCATCGA 60.079 57.895 0.00 0.00 42.96 3.59
523 533 1.580893 CGTCGCGGAAACATGCATG 60.581 57.895 25.09 25.09 0.00 4.06
554 564 1.377987 GGCCAAGTTGTGCCGGATA 60.378 57.895 5.05 0.00 38.00 2.59
563 573 4.446371 TGTTTATTTTGTGGGCCAAGTTG 58.554 39.130 8.40 0.00 33.75 3.16
575 585 7.387945 GTCGTTTGACCAAGTTGTTTATTTTG 58.612 34.615 1.45 0.00 39.30 2.44
576 586 6.251801 CGTCGTTTGACCAAGTTGTTTATTTT 59.748 34.615 1.45 0.00 42.37 1.82
609 622 7.711846 TGCTGTTTACGCAATGGATTAATTAT 58.288 30.769 0.00 0.00 33.87 1.28
649 662 9.492973 GCGGGGTAATATTAGTACTTGATTAAA 57.507 33.333 0.00 0.00 0.00 1.52
650 663 8.649591 TGCGGGGTAATATTAGTACTTGATTAA 58.350 33.333 0.00 0.00 0.00 1.40
651 664 8.192743 TGCGGGGTAATATTAGTACTTGATTA 57.807 34.615 0.00 0.39 0.00 1.75
652 665 7.069877 TGCGGGGTAATATTAGTACTTGATT 57.930 36.000 0.00 1.37 0.00 2.57
653 666 6.675413 TGCGGGGTAATATTAGTACTTGAT 57.325 37.500 0.00 0.00 0.00 2.57
654 667 6.482898 TTGCGGGGTAATATTAGTACTTGA 57.517 37.500 0.00 0.00 0.00 3.02
655 668 7.556733 TTTTGCGGGGTAATATTAGTACTTG 57.443 36.000 0.00 0.00 0.00 3.16
683 696 7.607607 TGACACATCATGATACTAGTGCTTTTT 59.392 33.333 18.80 4.45 0.00 1.94
684 697 7.105588 TGACACATCATGATACTAGTGCTTTT 58.894 34.615 18.80 4.74 0.00 2.27
685 698 6.643388 TGACACATCATGATACTAGTGCTTT 58.357 36.000 18.80 5.02 0.00 3.51
686 699 6.225981 TGACACATCATGATACTAGTGCTT 57.774 37.500 18.80 5.59 0.00 3.91
687 700 5.859205 TGACACATCATGATACTAGTGCT 57.141 39.130 18.80 9.77 0.00 4.40
688 701 6.536582 AGTTTGACACATCATGATACTAGTGC 59.463 38.462 18.80 13.66 33.85 4.40
689 702 9.242477 CTAGTTTGACACATCATGATACTAGTG 57.758 37.037 21.31 19.70 33.58 2.74
704 717 6.072064 TCACCTACTTCTAGCTAGTTTGACAC 60.072 42.308 20.10 0.00 0.00 3.67
706 719 6.151480 ACTCACCTACTTCTAGCTAGTTTGAC 59.849 42.308 20.10 0.00 0.00 3.18
707 720 6.151312 CACTCACCTACTTCTAGCTAGTTTGA 59.849 42.308 20.10 11.40 0.00 2.69
708 721 6.326375 CACTCACCTACTTCTAGCTAGTTTG 58.674 44.000 20.10 13.21 0.00 2.93
725 738 2.311688 CTATCCACCCCGCACTCACC 62.312 65.000 0.00 0.00 0.00 4.02
737 751 5.278561 CCCTACAAGTCGATCTTCTATCCAC 60.279 48.000 0.00 0.00 33.63 4.02
743 757 4.712337 ACAATCCCTACAAGTCGATCTTCT 59.288 41.667 0.00 0.00 33.63 2.85
749 763 4.819105 ATCAACAATCCCTACAAGTCGA 57.181 40.909 0.00 0.00 0.00 4.20
750 764 5.661458 AGTATCAACAATCCCTACAAGTCG 58.339 41.667 0.00 0.00 0.00 4.18
751 765 7.923414 AAAGTATCAACAATCCCTACAAGTC 57.077 36.000 0.00 0.00 0.00 3.01
754 768 9.575868 TTACAAAAGTATCAACAATCCCTACAA 57.424 29.630 0.00 0.00 0.00 2.41
758 772 9.362151 TCTTTTACAAAAGTATCAACAATCCCT 57.638 29.630 12.80 0.00 44.37 4.20
775 789 9.826574 AGCTAATCACCGTATTATCTTTTACAA 57.173 29.630 0.00 0.00 0.00 2.41
780 794 6.765989 TGCAAGCTAATCACCGTATTATCTTT 59.234 34.615 0.00 0.00 29.62 2.52
781 795 6.288294 TGCAAGCTAATCACCGTATTATCTT 58.712 36.000 0.00 0.00 31.30 2.40
783 797 6.539649 TTGCAAGCTAATCACCGTATTATC 57.460 37.500 0.00 0.00 0.00 1.75
790 808 4.572389 ACTCTATTTGCAAGCTAATCACCG 59.428 41.667 0.00 0.00 0.00 4.94
797 815 7.824289 ACATCAAAGTACTCTATTTGCAAGCTA 59.176 33.333 0.00 0.00 36.55 3.32
799 817 6.846350 ACATCAAAGTACTCTATTTGCAAGC 58.154 36.000 0.00 0.00 36.55 4.01
825 843 4.577693 AGCAATTGCATGATACCAGTACTG 59.422 41.667 30.89 16.34 45.16 2.74
827 845 4.576053 TGAGCAATTGCATGATACCAGTAC 59.424 41.667 30.89 7.20 45.16 2.73
828 846 4.779696 TGAGCAATTGCATGATACCAGTA 58.220 39.130 30.89 1.73 45.16 2.74
830 848 3.550233 GCTGAGCAATTGCATGATACCAG 60.550 47.826 30.89 22.26 45.16 4.00
831 849 2.359848 GCTGAGCAATTGCATGATACCA 59.640 45.455 30.89 14.91 45.16 3.25
832 850 2.621998 AGCTGAGCAATTGCATGATACC 59.378 45.455 30.89 12.57 45.16 2.73
840 868 3.804873 GGTAGTACTAGCTGAGCAATTGC 59.195 47.826 23.05 23.05 42.49 3.56
861 889 2.315925 ACTTGTGTGACAGTGTGAGG 57.684 50.000 0.00 0.00 0.00 3.86
865 894 5.531122 AGTACATACTTGTGTGACAGTGT 57.469 39.130 0.00 0.00 36.53 3.55
902 934 3.578716 TGCCAAGACAAGAAGCTAGTAGT 59.421 43.478 0.00 0.00 0.00 2.73
903 935 4.193826 TGCCAAGACAAGAAGCTAGTAG 57.806 45.455 0.00 0.00 0.00 2.57
904 936 4.315803 GTTGCCAAGACAAGAAGCTAGTA 58.684 43.478 0.00 0.00 0.00 1.82
905 937 3.142174 GTTGCCAAGACAAGAAGCTAGT 58.858 45.455 0.00 0.00 0.00 2.57
921 953 3.113260 AGCTAGGAATGATACGTTGCC 57.887 47.619 0.00 0.00 0.00 4.52
1024 1063 0.250513 GCGGAGAGGGAGAACACAAT 59.749 55.000 0.00 0.00 0.00 2.71
1047 1086 1.263342 TGGCAAGCAGAGAGAGGAGG 61.263 60.000 0.00 0.00 0.00 4.30
1108 1147 1.016130 ACGCCGATGCTGAAGTTCAG 61.016 55.000 25.68 25.68 46.90 3.02
1222 1264 1.593933 GTACGTGGTTGAAGAACGCAA 59.406 47.619 0.00 0.00 40.90 4.85
1293 1341 0.581529 CACGGCGCAATGTATCGATT 59.418 50.000 10.83 0.00 0.00 3.34
1308 1356 0.170116 ACAAGCACAAACACACACGG 59.830 50.000 0.00 0.00 0.00 4.94
1309 1357 1.258427 CACAAGCACAAACACACACG 58.742 50.000 0.00 0.00 0.00 4.49
1652 1704 5.741011 TCCTACAAGTACATCCATTGTTCC 58.259 41.667 3.14 0.00 39.87 3.62
1657 1709 6.620877 TCAACTCCTACAAGTACATCCATT 57.379 37.500 0.00 0.00 0.00 3.16
1743 1803 0.882927 TCAACCTTACAGCACCGTGC 60.883 55.000 16.04 16.04 45.46 5.34
1744 1804 1.732259 GATCAACCTTACAGCACCGTG 59.268 52.381 0.00 0.00 0.00 4.94
1745 1805 1.671850 CGATCAACCTTACAGCACCGT 60.672 52.381 0.00 0.00 0.00 4.83
1763 1823 5.561993 CAACAACCGAAGAAACTTAAACGA 58.438 37.500 0.00 0.00 0.00 3.85
1764 1824 4.203563 GCAACAACCGAAGAAACTTAAACG 59.796 41.667 0.00 0.00 0.00 3.60
1765 1825 5.096849 TGCAACAACCGAAGAAACTTAAAC 58.903 37.500 0.00 0.00 0.00 2.01
1810 1870 3.316308 AGAAGCTTACAAAACCACTGCAG 59.684 43.478 13.48 13.48 0.00 4.41
1843 1907 6.093495 CGAGTTATTCCAACCATGTATGTTGT 59.907 38.462 10.99 0.00 0.00 3.32
1857 1921 8.428852 TCCTCAATTCATATTCGAGTTATTCCA 58.571 33.333 0.00 0.00 0.00 3.53
1890 1954 1.840635 ACCCTGGAATAGCTTCAGGAC 59.159 52.381 19.87 0.00 34.33 3.85
1895 1959 0.255890 TGGCACCCTGGAATAGCTTC 59.744 55.000 0.00 0.00 0.00 3.86
1898 1962 1.152881 CCTGGCACCCTGGAATAGC 60.153 63.158 0.00 0.00 44.09 2.97
1905 1969 1.299976 GGACTAACCTGGCACCCTG 59.700 63.158 0.00 0.00 35.41 4.45
1926 1990 8.414003 TGACTCAGATGTTCATTATGGTAGTAC 58.586 37.037 0.00 0.00 0.00 2.73
1932 1996 7.621428 AACTTGACTCAGATGTTCATTATGG 57.379 36.000 0.00 0.00 0.00 2.74
1933 1997 9.903682 AAAAACTTGACTCAGATGTTCATTATG 57.096 29.630 0.00 0.00 0.00 1.90
2002 2068 9.921637 GAAATTTTGAACCCATATACAAGTCAA 57.078 29.630 0.00 0.00 0.00 3.18
2003 2069 9.083422 TGAAATTTTGAACCCATATACAAGTCA 57.917 29.630 0.00 0.00 0.00 3.41
2004 2070 9.921637 TTGAAATTTTGAACCCATATACAAGTC 57.078 29.630 0.00 0.00 0.00 3.01
2048 2114 1.917568 TGGATACTTTGGTACCCACCC 59.082 52.381 10.07 1.79 36.71 4.61
2062 2128 9.045223 GGCTCAAAATTTTGGAATTATGGATAC 57.955 33.333 26.45 3.94 38.66 2.24
2066 2132 7.104939 TCTGGCTCAAAATTTTGGAATTATGG 58.895 34.615 26.45 12.08 38.66 2.74
2073 2139 5.804944 TGAATCTGGCTCAAAATTTTGGA 57.195 34.783 26.45 17.15 38.66 3.53
2083 2149 7.523293 TTAAAATGAGTTTGAATCTGGCTCA 57.477 32.000 0.00 0.00 39.98 4.26
2163 2229 7.746034 GCAAATTTTCGGAAATTCTTTTGGATC 59.254 33.333 14.72 0.00 42.97 3.36
2180 2246 5.754890 ACCTCACTGAAATGTGCAAATTTTC 59.245 36.000 15.98 12.12 37.81 2.29
2187 2253 2.636647 TGACCTCACTGAAATGTGCA 57.363 45.000 0.00 0.00 37.81 4.57
2225 2294 7.393216 TGGAAGCATGCATAAGGTTTTAAATT 58.607 30.769 21.98 0.00 0.00 1.82
2226 2295 6.945218 TGGAAGCATGCATAAGGTTTTAAAT 58.055 32.000 21.98 0.00 0.00 1.40
2227 2296 6.352016 TGGAAGCATGCATAAGGTTTTAAA 57.648 33.333 21.98 0.00 0.00 1.52
2228 2297 5.991933 TGGAAGCATGCATAAGGTTTTAA 57.008 34.783 21.98 0.00 0.00 1.52
2229 2298 5.421693 ACATGGAAGCATGCATAAGGTTTTA 59.578 36.000 21.98 0.00 35.11 1.52
2230 2299 4.223477 ACATGGAAGCATGCATAAGGTTTT 59.777 37.500 21.98 1.84 35.11 2.43
2231 2300 3.770933 ACATGGAAGCATGCATAAGGTTT 59.229 39.130 21.98 2.69 35.11 3.27
2232 2301 3.131577 CACATGGAAGCATGCATAAGGTT 59.868 43.478 21.98 3.54 35.11 3.50
2233 2302 2.691526 CACATGGAAGCATGCATAAGGT 59.308 45.455 21.98 7.30 35.11 3.50
2234 2303 2.035449 CCACATGGAAGCATGCATAAGG 59.965 50.000 21.98 6.63 35.11 2.69
2235 2304 2.545113 GCCACATGGAAGCATGCATAAG 60.545 50.000 21.98 6.89 35.11 1.73
2236 2305 1.409790 GCCACATGGAAGCATGCATAA 59.590 47.619 21.98 2.36 35.11 1.90
2237 2306 1.034356 GCCACATGGAAGCATGCATA 58.966 50.000 21.98 2.89 35.11 3.14
2263 2332 5.129634 TGACTTTTGAAGGTGAGTTATGCA 58.870 37.500 0.00 0.00 0.00 3.96
2270 2339 5.762218 AGAAGACATGACTTTTGAAGGTGAG 59.238 40.000 11.69 0.00 0.00 3.51
2284 2353 8.868522 AAGGATCACAAAATTAGAAGACATGA 57.131 30.769 0.00 0.00 0.00 3.07
2316 2385 2.132762 GGTCGGGCAGATTACGTAATG 58.867 52.381 24.90 14.31 0.00 1.90
2317 2386 2.037144 AGGTCGGGCAGATTACGTAAT 58.963 47.619 20.46 20.46 0.00 1.89
2324 2393 1.139853 GAGATGAAGGTCGGGCAGATT 59.860 52.381 0.00 0.00 0.00 2.40
2367 2436 2.136878 TTGGGTTGGCGGCAACATT 61.137 52.632 43.04 0.00 36.83 2.71
2409 2478 6.207417 TGGTTTCTTCTCCAAGAATTAGCTTG 59.793 38.462 0.00 0.00 46.05 4.01
2410 2479 6.306987 TGGTTTCTTCTCCAAGAATTAGCTT 58.693 36.000 0.00 0.00 46.05 3.74
2411 2480 5.880901 TGGTTTCTTCTCCAAGAATTAGCT 58.119 37.500 0.00 0.00 46.05 3.32
2412 2481 5.707764 ACTGGTTTCTTCTCCAAGAATTAGC 59.292 40.000 0.00 0.00 46.05 3.09
2413 2482 8.722394 GTTACTGGTTTCTTCTCCAAGAATTAG 58.278 37.037 0.00 1.44 46.05 1.73
2414 2483 8.215050 TGTTACTGGTTTCTTCTCCAAGAATTA 58.785 33.333 0.00 0.00 46.05 1.40
2415 2484 7.060421 TGTTACTGGTTTCTTCTCCAAGAATT 58.940 34.615 0.00 0.00 46.05 2.17
2416 2485 6.601332 TGTTACTGGTTTCTTCTCCAAGAAT 58.399 36.000 0.00 0.00 46.05 2.40
2417 2486 5.996644 TGTTACTGGTTTCTTCTCCAAGAA 58.003 37.500 0.00 0.00 45.30 2.52
2418 2487 5.623956 TGTTACTGGTTTCTTCTCCAAGA 57.376 39.130 0.00 0.00 36.82 3.02
2419 2488 9.838339 ATATATGTTACTGGTTTCTTCTCCAAG 57.162 33.333 0.00 0.00 33.06 3.61
2420 2489 9.613428 CATATATGTTACTGGTTTCTTCTCCAA 57.387 33.333 4.43 0.00 33.06 3.53
2421 2490 8.768397 ACATATATGTTACTGGTTTCTTCTCCA 58.232 33.333 12.75 0.00 37.90 3.86
2422 2491 9.046296 CACATATATGTTACTGGTTTCTTCTCC 57.954 37.037 15.85 0.00 39.39 3.71
2423 2492 9.046296 CCACATATATGTTACTGGTTTCTTCTC 57.954 37.037 15.85 0.00 39.39 2.87
2424 2493 8.548877 ACCACATATATGTTACTGGTTTCTTCT 58.451 33.333 15.85 0.00 39.39 2.85
2425 2494 8.732746 ACCACATATATGTTACTGGTTTCTTC 57.267 34.615 15.85 0.00 39.39 2.87
2426 2495 7.773690 GGACCACATATATGTTACTGGTTTCTT 59.226 37.037 20.74 4.31 39.39 2.52
2427 2496 7.280356 GGACCACATATATGTTACTGGTTTCT 58.720 38.462 20.74 4.60 39.39 2.52
2428 2497 6.485648 GGGACCACATATATGTTACTGGTTTC 59.514 42.308 20.74 16.59 39.39 2.78
2429 2498 6.362248 GGGACCACATATATGTTACTGGTTT 58.638 40.000 20.74 5.44 39.39 3.27
2430 2499 5.937111 GGGACCACATATATGTTACTGGTT 58.063 41.667 20.74 9.61 39.39 3.67
2431 2500 5.562298 GGGACCACATATATGTTACTGGT 57.438 43.478 20.19 20.19 39.39 4.00
2449 2518 3.010413 GCTGGCATGCTTTGGGGAC 62.010 63.158 18.92 0.00 0.00 4.46
2450 2519 2.681064 GCTGGCATGCTTTGGGGA 60.681 61.111 18.92 0.00 0.00 4.81
2451 2520 3.777910 GGCTGGCATGCTTTGGGG 61.778 66.667 18.92 3.01 0.00 4.96
2452 2521 2.998480 TGGCTGGCATGCTTTGGG 60.998 61.111 18.92 4.75 0.00 4.12
2453 2522 2.577059 CTGGCTGGCATGCTTTGG 59.423 61.111 18.92 6.52 0.00 3.28
2454 2523 2.125673 GCTGGCTGGCATGCTTTG 60.126 61.111 18.92 9.06 0.00 2.77
2455 2524 2.602267 TGCTGGCTGGCATGCTTT 60.602 55.556 18.92 0.00 37.29 3.51
2456 2525 3.068691 CTGCTGGCTGGCATGCTT 61.069 61.111 18.92 0.00 41.63 3.91
2460 2529 3.110897 TATCGCTGCTGGCTGGCAT 62.111 57.895 3.74 0.00 41.63 4.40
2461 2530 3.745240 CTATCGCTGCTGGCTGGCA 62.745 63.158 3.18 3.18 40.15 4.92
2462 2531 2.971413 CTATCGCTGCTGGCTGGC 60.971 66.667 0.00 0.00 39.13 4.85
2463 2532 1.300775 CTCTATCGCTGCTGGCTGG 60.301 63.158 0.00 0.00 39.13 4.85
2464 2533 1.300775 CCTCTATCGCTGCTGGCTG 60.301 63.158 0.00 0.00 39.13 4.85
2465 2534 0.468214 TACCTCTATCGCTGCTGGCT 60.468 55.000 0.00 0.00 39.13 4.75
2466 2535 0.038709 CTACCTCTATCGCTGCTGGC 60.039 60.000 0.00 0.00 37.64 4.85
2467 2536 0.600557 CCTACCTCTATCGCTGCTGG 59.399 60.000 0.00 0.00 0.00 4.85
2468 2537 1.539388 CTCCTACCTCTATCGCTGCTG 59.461 57.143 0.00 0.00 0.00 4.41
2469 2538 1.422024 TCTCCTACCTCTATCGCTGCT 59.578 52.381 0.00 0.00 0.00 4.24
2470 2539 1.898902 TCTCCTACCTCTATCGCTGC 58.101 55.000 0.00 0.00 0.00 5.25
2471 2540 3.305064 GCTTTCTCCTACCTCTATCGCTG 60.305 52.174 0.00 0.00 0.00 5.18
2472 2541 2.888414 GCTTTCTCCTACCTCTATCGCT 59.112 50.000 0.00 0.00 0.00 4.93
2473 2542 2.350964 CGCTTTCTCCTACCTCTATCGC 60.351 54.545 0.00 0.00 0.00 4.58
2474 2543 2.226912 CCGCTTTCTCCTACCTCTATCG 59.773 54.545 0.00 0.00 0.00 2.92
2475 2544 2.029739 GCCGCTTTCTCCTACCTCTATC 60.030 54.545 0.00 0.00 0.00 2.08
2476 2545 1.964933 GCCGCTTTCTCCTACCTCTAT 59.035 52.381 0.00 0.00 0.00 1.98
2477 2546 1.341679 TGCCGCTTTCTCCTACCTCTA 60.342 52.381 0.00 0.00 0.00 2.43
2478 2547 0.614979 TGCCGCTTTCTCCTACCTCT 60.615 55.000 0.00 0.00 0.00 3.69
2479 2548 0.179097 CTGCCGCTTTCTCCTACCTC 60.179 60.000 0.00 0.00 0.00 3.85
2480 2549 1.901085 CTGCCGCTTTCTCCTACCT 59.099 57.895 0.00 0.00 0.00 3.08
2481 2550 1.815840 GCTGCCGCTTTCTCCTACC 60.816 63.158 0.00 0.00 0.00 3.18
2482 2551 0.673644 TTGCTGCCGCTTTCTCCTAC 60.674 55.000 0.70 0.00 36.97 3.18
2483 2552 0.391661 CTTGCTGCCGCTTTCTCCTA 60.392 55.000 0.70 0.00 36.97 2.94
2484 2553 1.673665 CTTGCTGCCGCTTTCTCCT 60.674 57.895 0.70 0.00 36.97 3.69
2485 2554 1.237285 TTCTTGCTGCCGCTTTCTCC 61.237 55.000 0.70 0.00 36.97 3.71
2486 2555 0.110010 GTTCTTGCTGCCGCTTTCTC 60.110 55.000 0.70 0.00 36.97 2.87
2487 2556 0.819259 TGTTCTTGCTGCCGCTTTCT 60.819 50.000 0.70 0.00 36.97 2.52
2488 2557 0.661483 GTGTTCTTGCTGCCGCTTTC 60.661 55.000 0.70 0.00 36.97 2.62
2489 2558 1.360192 GTGTTCTTGCTGCCGCTTT 59.640 52.632 0.70 0.00 36.97 3.51
2490 2559 2.896801 CGTGTTCTTGCTGCCGCTT 61.897 57.895 0.70 0.00 36.97 4.68
2491 2560 3.349006 CGTGTTCTTGCTGCCGCT 61.349 61.111 0.70 0.00 36.97 5.52
2493 2562 4.389576 GGCGTGTTCTTGCTGCCG 62.390 66.667 0.00 0.00 35.77 5.69
2494 2563 2.980233 AGGCGTGTTCTTGCTGCC 60.980 61.111 0.00 0.00 46.07 4.85
2495 2564 2.180131 CTCAGGCGTGTTCTTGCTGC 62.180 60.000 6.26 0.00 0.00 5.25
2496 2565 1.864862 CTCAGGCGTGTTCTTGCTG 59.135 57.895 6.26 0.00 0.00 4.41
2497 2566 1.963338 GCTCAGGCGTGTTCTTGCT 60.963 57.895 6.26 0.00 0.00 3.91
2498 2567 1.785041 TTGCTCAGGCGTGTTCTTGC 61.785 55.000 6.26 5.46 42.25 4.01
2499 2568 0.236711 CTTGCTCAGGCGTGTTCTTG 59.763 55.000 6.26 0.00 42.25 3.02
2500 2569 0.886490 CCTTGCTCAGGCGTGTTCTT 60.886 55.000 6.26 0.00 42.25 2.52
2501 2570 1.302033 CCTTGCTCAGGCGTGTTCT 60.302 57.895 6.26 0.00 42.25 3.01
2502 2571 2.328099 CCCTTGCTCAGGCGTGTTC 61.328 63.158 6.26 0.35 42.29 3.18
2503 2572 2.281761 CCCTTGCTCAGGCGTGTT 60.282 61.111 6.26 0.00 42.29 3.32
2504 2573 4.335647 CCCCTTGCTCAGGCGTGT 62.336 66.667 6.26 0.00 42.29 4.49
2505 2574 3.965539 CTCCCCTTGCTCAGGCGTG 62.966 68.421 0.00 0.00 42.29 5.34
2506 2575 3.710722 CTCCCCTTGCTCAGGCGT 61.711 66.667 0.00 0.00 42.29 5.68
2507 2576 4.479993 CCTCCCCTTGCTCAGGCG 62.480 72.222 0.00 0.00 42.29 5.52
2508 2577 4.811364 GCCTCCCCTTGCTCAGGC 62.811 72.222 0.00 0.00 44.63 4.85
2509 2578 3.333219 TGCCTCCCCTTGCTCAGG 61.333 66.667 0.00 0.00 43.49 3.86
2510 2579 2.045536 GTGCCTCCCCTTGCTCAG 60.046 66.667 0.00 0.00 0.00 3.35
2511 2580 2.416107 CTTGTGCCTCCCCTTGCTCA 62.416 60.000 0.00 0.00 0.00 4.26
2512 2581 1.676967 CTTGTGCCTCCCCTTGCTC 60.677 63.158 0.00 0.00 0.00 4.26
2513 2582 1.504275 ATCTTGTGCCTCCCCTTGCT 61.504 55.000 0.00 0.00 0.00 3.91
2514 2583 0.255890 TATCTTGTGCCTCCCCTTGC 59.744 55.000 0.00 0.00 0.00 4.01
2515 2584 2.648059 CTTATCTTGTGCCTCCCCTTG 58.352 52.381 0.00 0.00 0.00 3.61
2516 2585 1.064389 GCTTATCTTGTGCCTCCCCTT 60.064 52.381 0.00 0.00 0.00 3.95
2517 2586 0.548510 GCTTATCTTGTGCCTCCCCT 59.451 55.000 0.00 0.00 0.00 4.79
2518 2587 0.815615 CGCTTATCTTGTGCCTCCCC 60.816 60.000 0.00 0.00 0.00 4.81
2519 2588 1.440145 GCGCTTATCTTGTGCCTCCC 61.440 60.000 0.00 0.00 35.17 4.30
2520 2589 0.744414 TGCGCTTATCTTGTGCCTCC 60.744 55.000 9.73 0.00 39.88 4.30
2521 2590 1.303309 ATGCGCTTATCTTGTGCCTC 58.697 50.000 9.73 0.00 39.88 4.70
2522 2591 2.614057 GTTATGCGCTTATCTTGTGCCT 59.386 45.455 9.73 0.00 39.88 4.75
2523 2592 2.287009 GGTTATGCGCTTATCTTGTGCC 60.287 50.000 9.73 0.00 39.88 5.01
2524 2593 2.614057 AGGTTATGCGCTTATCTTGTGC 59.386 45.455 9.73 0.00 40.87 4.57
2525 2594 3.871006 TGAGGTTATGCGCTTATCTTGTG 59.129 43.478 9.73 0.00 0.00 3.33
2526 2595 4.122776 CTGAGGTTATGCGCTTATCTTGT 58.877 43.478 9.73 0.00 0.00 3.16
2527 2596 3.059325 GCTGAGGTTATGCGCTTATCTTG 60.059 47.826 9.73 6.42 0.00 3.02
2528 2597 3.134458 GCTGAGGTTATGCGCTTATCTT 58.866 45.455 9.73 2.03 0.00 2.40
2529 2598 2.103094 TGCTGAGGTTATGCGCTTATCT 59.897 45.455 9.73 7.62 0.00 1.98
2530 2599 2.483876 TGCTGAGGTTATGCGCTTATC 58.516 47.619 9.73 5.87 0.00 1.75
2531 2600 2.620251 TGCTGAGGTTATGCGCTTAT 57.380 45.000 9.73 0.00 0.00 1.73
2532 2601 2.093711 TCTTGCTGAGGTTATGCGCTTA 60.094 45.455 9.73 3.30 0.00 3.09
2533 2602 1.089920 CTTGCTGAGGTTATGCGCTT 58.910 50.000 9.73 4.59 0.00 4.68
2534 2603 0.250234 TCTTGCTGAGGTTATGCGCT 59.750 50.000 9.73 0.00 0.00 5.92
2535 2604 1.086696 TTCTTGCTGAGGTTATGCGC 58.913 50.000 0.00 0.00 0.00 6.09
2536 2605 2.350522 AGTTCTTGCTGAGGTTATGCG 58.649 47.619 0.00 0.00 0.00 4.73
2537 2606 3.119708 CCAAGTTCTTGCTGAGGTTATGC 60.120 47.826 7.00 0.00 0.00 3.14
2538 2607 4.074970 ACCAAGTTCTTGCTGAGGTTATG 58.925 43.478 7.00 0.00 0.00 1.90
2539 2608 4.074970 CACCAAGTTCTTGCTGAGGTTAT 58.925 43.478 7.00 0.00 0.00 1.89
2540 2609 3.135712 TCACCAAGTTCTTGCTGAGGTTA 59.864 43.478 7.00 0.00 0.00 2.85
2541 2610 2.092429 TCACCAAGTTCTTGCTGAGGTT 60.092 45.455 7.00 0.00 0.00 3.50
2542 2611 1.490490 TCACCAAGTTCTTGCTGAGGT 59.510 47.619 7.00 0.00 0.00 3.85
2543 2612 2.149578 CTCACCAAGTTCTTGCTGAGG 58.850 52.381 21.01 7.00 33.29 3.86
2544 2613 1.534595 GCTCACCAAGTTCTTGCTGAG 59.465 52.381 22.95 22.95 37.58 3.35
2545 2614 1.141657 AGCTCACCAAGTTCTTGCTGA 59.858 47.619 7.00 8.30 0.00 4.26
2546 2615 1.602311 AGCTCACCAAGTTCTTGCTG 58.398 50.000 7.00 4.61 0.00 4.41
2547 2616 3.244700 ACATAGCTCACCAAGTTCTTGCT 60.245 43.478 7.00 3.88 0.00 3.91
2548 2617 3.077359 ACATAGCTCACCAAGTTCTTGC 58.923 45.455 7.00 0.00 0.00 4.01
2549 2618 6.414408 CTAACATAGCTCACCAAGTTCTTG 57.586 41.667 5.66 5.66 0.00 3.02
2564 2633 3.389329 AGAGTGGTCCATGGCTAACATAG 59.611 47.826 6.96 0.00 37.84 2.23
2565 2634 3.384168 AGAGTGGTCCATGGCTAACATA 58.616 45.455 6.96 0.00 37.84 2.29
2566 2635 2.200081 AGAGTGGTCCATGGCTAACAT 58.800 47.619 6.96 0.00 41.57 2.71
2567 2636 1.656587 AGAGTGGTCCATGGCTAACA 58.343 50.000 6.96 0.00 0.00 2.41
2568 2637 3.055385 TGTTAGAGTGGTCCATGGCTAAC 60.055 47.826 21.55 21.55 38.59 2.34
2569 2638 3.055385 GTGTTAGAGTGGTCCATGGCTAA 60.055 47.826 6.96 5.01 0.00 3.09
2570 2639 2.500098 GTGTTAGAGTGGTCCATGGCTA 59.500 50.000 6.96 0.00 0.00 3.93
2571 2640 1.279271 GTGTTAGAGTGGTCCATGGCT 59.721 52.381 6.96 0.00 0.00 4.75
2572 2641 1.279271 AGTGTTAGAGTGGTCCATGGC 59.721 52.381 6.96 1.78 0.00 4.40
2573 2642 2.567169 TCAGTGTTAGAGTGGTCCATGG 59.433 50.000 4.97 4.97 0.00 3.66
2574 2643 3.961480 TCAGTGTTAGAGTGGTCCATG 57.039 47.619 0.00 0.00 0.00 3.66
2575 2644 4.348168 ACTTTCAGTGTTAGAGTGGTCCAT 59.652 41.667 0.00 0.00 0.00 3.41
2576 2645 3.709653 ACTTTCAGTGTTAGAGTGGTCCA 59.290 43.478 0.00 0.00 0.00 4.02
2577 2646 4.338379 ACTTTCAGTGTTAGAGTGGTCC 57.662 45.455 0.00 0.00 0.00 4.46
2578 2647 7.656137 TGATTTACTTTCAGTGTTAGAGTGGTC 59.344 37.037 0.00 0.00 0.00 4.02
2579 2648 7.506114 TGATTTACTTTCAGTGTTAGAGTGGT 58.494 34.615 0.00 0.00 0.00 4.16
2580 2649 7.962964 TGATTTACTTTCAGTGTTAGAGTGG 57.037 36.000 0.00 0.00 0.00 4.00
2581 2650 9.046296 ACTTGATTTACTTTCAGTGTTAGAGTG 57.954 33.333 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.