Multiple sequence alignment - TraesCS1B01G364600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G364600 chr1B 100.000 2709 0 0 1 2709 594493848 594491140 0.000000e+00 5003.0
1 TraesCS1B01G364600 chr1B 88.889 54 3 2 1 54 594505330 594505280 2.250000e-06 63.9
2 TraesCS1B01G364600 chr1D 96.495 1341 27 6 814 2139 438582577 438581242 0.000000e+00 2198.0
3 TraesCS1B01G364600 chr1D 96.324 544 7 4 272 804 438583419 438582878 0.000000e+00 881.0
4 TraesCS1B01G364600 chr1D 97.297 259 6 1 2451 2709 438580542 438580285 3.200000e-119 438.0
5 TraesCS1B01G364600 chr1D 94.091 220 8 3 2202 2418 438580761 438580544 2.010000e-86 329.0
6 TraesCS1B01G364600 chr1D 96.739 92 1 1 16 107 438583507 438583418 4.670000e-33 152.0
7 TraesCS1B01G364600 chr1D 100.000 47 0 0 2138 2184 438580794 438580748 1.340000e-13 87.9
8 TraesCS1B01G364600 chr1A 97.192 1211 20 4 829 2025 535079385 535078175 0.000000e+00 2036.0
9 TraesCS1B01G364600 chr1A 92.443 794 24 17 1 790 535080145 535079384 0.000000e+00 1101.0
10 TraesCS1B01G364600 chr1A 93.458 107 6 1 2034 2139 535076883 535076777 1.000000e-34 158.0
11 TraesCS1B01G364600 chr4B 84.558 939 98 32 819 1723 659051930 659052855 0.000000e+00 887.0
12 TraesCS1B01G364600 chr7D 89.157 498 41 10 1229 1723 102538539 102539026 2.310000e-170 608.0
13 TraesCS1B01G364600 chr7D 84.928 418 44 12 819 1227 102538100 102538507 3.250000e-109 405.0
14 TraesCS1B01G364600 chr7D 88.732 142 15 1 446 587 102537629 102537769 3.590000e-39 172.0
15 TraesCS1B01G364600 chr7D 83.688 141 16 3 308 446 102537454 102537589 2.830000e-25 126.0
16 TraesCS1B01G364600 chr7A 89.157 498 41 10 1229 1723 106679558 106680045 2.310000e-170 608.0
17 TraesCS1B01G364600 chr7A 83.971 418 48 12 819 1227 106679119 106679526 1.520000e-102 383.0
18 TraesCS1B01G364600 chr7A 83.688 141 16 3 308 446 106678404 106678539 2.830000e-25 126.0
19 TraesCS1B01G364600 chr7B 87.751 498 47 11 1229 1723 59743333 59743819 1.090000e-158 569.0
20 TraesCS1B01G364600 chr7B 85.096 416 44 12 819 1227 59742897 59743301 2.510000e-110 409.0
21 TraesCS1B01G364600 chr7B 90.845 142 12 1 446 587 59742403 59742543 3.560000e-44 189.0
22 TraesCS1B01G364600 chr7B 83.803 142 16 3 308 447 59742228 59742364 7.870000e-26 128.0
23 TraesCS1B01G364600 chr4D 89.565 115 8 3 462 572 508644411 508644525 2.810000e-30 143.0
24 TraesCS1B01G364600 chr5A 92.537 67 5 0 460 526 30215817 30215751 2.220000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G364600 chr1B 594491140 594493848 2708 True 5003.000000 5003 100.000000 1 2709 1 chr1B.!!$R1 2708
1 TraesCS1B01G364600 chr1D 438580285 438583507 3222 True 680.983333 2198 96.824333 16 2709 6 chr1D.!!$R1 2693
2 TraesCS1B01G364600 chr1A 535076777 535080145 3368 True 1098.333333 2036 94.364333 1 2139 3 chr1A.!!$R1 2138
3 TraesCS1B01G364600 chr4B 659051930 659052855 925 False 887.000000 887 84.558000 819 1723 1 chr4B.!!$F1 904
4 TraesCS1B01G364600 chr7D 102537454 102539026 1572 False 327.750000 608 86.626250 308 1723 4 chr7D.!!$F1 1415
5 TraesCS1B01G364600 chr7A 106678404 106680045 1641 False 372.333333 608 85.605333 308 1723 3 chr7A.!!$F1 1415
6 TraesCS1B01G364600 chr7B 59742228 59743819 1591 False 323.750000 569 86.873750 308 1723 4 chr7B.!!$F1 1415

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 906 0.036388 GATTTCCGGGCTGTCTGTGA 60.036 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 4690 0.798776 CGTGCAACAATGAGGTCCTC 59.201 55.0 12.4 12.4 35.74 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 0.780637 TCTCTCCAGTCCAGTCCACT 59.219 55.000 0.00 0.00 0.00 4.00
140 141 1.878953 GGAAAAGCAGACCGAACTGA 58.121 50.000 11.76 0.00 39.94 3.41
141 142 2.218603 GGAAAAGCAGACCGAACTGAA 58.781 47.619 11.76 0.00 39.94 3.02
184 185 6.430308 CCAGCGTGGATCTTCTTATAGTACTA 59.570 42.308 4.77 4.77 40.96 1.82
185 186 7.299586 CAGCGTGGATCTTCTTATAGTACTAC 58.700 42.308 4.31 0.00 0.00 2.73
186 187 7.173562 CAGCGTGGATCTTCTTATAGTACTACT 59.826 40.741 4.31 0.00 0.00 2.57
187 188 8.373981 AGCGTGGATCTTCTTATAGTACTACTA 58.626 37.037 4.31 0.00 34.82 1.82
188 189 8.442384 GCGTGGATCTTCTTATAGTACTACTAC 58.558 40.741 4.31 0.00 32.84 2.73
189 190 9.486497 CGTGGATCTTCTTATAGTACTACTACA 57.514 37.037 4.31 0.00 32.84 2.74
201 202 8.967664 ATAGTACTACTACAAGTCTTCCTCTG 57.032 38.462 4.31 0.00 32.84 3.35
202 203 6.781943 AGTACTACTACAAGTCTTCCTCTGT 58.218 40.000 0.00 0.00 0.00 3.41
203 204 7.232910 AGTACTACTACAAGTCTTCCTCTGTT 58.767 38.462 0.00 0.00 0.00 3.16
204 205 6.980416 ACTACTACAAGTCTTCCTCTGTTT 57.020 37.500 0.00 0.00 0.00 2.83
205 206 6.983984 ACTACTACAAGTCTTCCTCTGTTTC 58.016 40.000 0.00 0.00 0.00 2.78
206 207 6.778559 ACTACTACAAGTCTTCCTCTGTTTCT 59.221 38.462 0.00 0.00 0.00 2.52
207 208 6.091718 ACTACAAGTCTTCCTCTGTTTCTC 57.908 41.667 0.00 0.00 0.00 2.87
208 209 5.598830 ACTACAAGTCTTCCTCTGTTTCTCA 59.401 40.000 0.00 0.00 0.00 3.27
209 210 5.359194 ACAAGTCTTCCTCTGTTTCTCAA 57.641 39.130 0.00 0.00 0.00 3.02
210 211 5.745227 ACAAGTCTTCCTCTGTTTCTCAAA 58.255 37.500 0.00 0.00 0.00 2.69
211 212 6.180472 ACAAGTCTTCCTCTGTTTCTCAAAA 58.820 36.000 0.00 0.00 0.00 2.44
212 213 6.659242 ACAAGTCTTCCTCTGTTTCTCAAAAA 59.341 34.615 0.00 0.00 0.00 1.94
253 254 9.771140 AAGTCTACCTCTTCCTTTAGATAAGAA 57.229 33.333 0.00 0.00 0.00 2.52
260 261 9.726438 CCTCTTCCTTTAGATAAGAAAACAGAA 57.274 33.333 0.00 0.00 0.00 3.02
416 429 1.304381 AGGTACCGCCGTCCTTGTA 60.304 57.895 6.18 0.00 43.70 2.41
587 649 5.396484 TGTACGTATGCAGACACTACTTTC 58.604 41.667 12.67 0.00 0.00 2.62
804 906 0.036388 GATTTCCGGGCTGTCTGTGA 60.036 55.000 0.00 0.00 0.00 3.58
808 910 2.737180 CGGGCTGTCTGTGAGTGT 59.263 61.111 0.00 0.00 0.00 3.55
809 911 1.665916 CGGGCTGTCTGTGAGTGTG 60.666 63.158 0.00 0.00 0.00 3.82
810 912 1.447643 GGGCTGTCTGTGAGTGTGT 59.552 57.895 0.00 0.00 0.00 3.72
811 913 0.882042 GGGCTGTCTGTGAGTGTGTG 60.882 60.000 0.00 0.00 0.00 3.82
812 914 0.179073 GGCTGTCTGTGAGTGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
1153 1652 2.888834 TAACGGCCCGTATTAAGGTC 57.111 50.000 10.30 0.00 39.99 3.85
1278 1825 5.168569 CGGTCTGTTATACTCACATGTGTT 58.831 41.667 24.63 15.41 0.00 3.32
1957 2521 5.288472 CCTGATTTGCGTATTTTAAACCTGC 59.712 40.000 0.00 0.00 0.00 4.85
2061 3909 3.877951 CCAATGAAGGCTGAGCTCT 57.122 52.632 16.19 0.00 0.00 4.09
2125 3974 8.527567 TCAAGTTTCAAAACAATTCGAAAAGT 57.472 26.923 0.00 0.29 41.30 2.66
2184 4482 3.629398 CAGAGGAGTTTGAGCAACAAGTT 59.371 43.478 0.00 0.00 39.77 2.66
2185 4483 4.096984 CAGAGGAGTTTGAGCAACAAGTTT 59.903 41.667 0.00 0.00 39.77 2.66
2186 4484 4.706962 AGAGGAGTTTGAGCAACAAGTTTT 59.293 37.500 0.00 0.00 39.77 2.43
2187 4485 5.185828 AGAGGAGTTTGAGCAACAAGTTTTT 59.814 36.000 0.00 0.00 39.77 1.94
2214 4512 7.608308 TTTTAGCAAAATTTGAGCAACAAGT 57.392 28.000 10.26 0.33 39.77 3.16
2215 4513 6.586868 TTAGCAAAATTTGAGCAACAAGTG 57.413 33.333 10.26 0.00 39.77 3.16
2309 4607 3.784701 TTAGCTCAAAACAAAACGCCA 57.215 38.095 0.00 0.00 0.00 5.69
2340 4638 1.073216 CTGTGCGTAAGAGTGAGCCG 61.073 60.000 0.00 0.00 43.02 5.52
2347 4645 2.143925 GTAAGAGTGAGCCGTTTTGCT 58.856 47.619 0.00 0.00 46.37 3.91
2368 4666 4.647399 GCTAGTCAGGTTAGAGATTCAGGT 59.353 45.833 0.00 0.00 0.00 4.00
2392 4690 6.232581 ACACCTCTCCTGAAATCTATGAAG 57.767 41.667 0.00 0.00 0.00 3.02
2405 4703 6.821616 AATCTATGAAGAGGACCTCATTGT 57.178 37.500 23.60 9.15 34.49 2.71
2410 4708 2.191128 AGAGGACCTCATTGTTGCAC 57.809 50.000 23.60 0.00 32.06 4.57
2418 4716 0.804364 TCATTGTTGCACGCCATCTC 59.196 50.000 0.00 0.00 0.00 2.75
2419 4717 0.521867 CATTGTTGCACGCCATCTCG 60.522 55.000 0.00 0.00 0.00 4.04
2420 4718 2.257286 ATTGTTGCACGCCATCTCGC 62.257 55.000 0.00 0.00 0.00 5.03
2421 4719 4.166011 GTTGCACGCCATCTCGCC 62.166 66.667 0.00 0.00 0.00 5.54
2422 4720 4.695993 TTGCACGCCATCTCGCCA 62.696 61.111 0.00 0.00 0.00 5.69
2423 4721 3.974835 TTGCACGCCATCTCGCCAT 62.975 57.895 0.00 0.00 0.00 4.40
2424 4722 3.204827 GCACGCCATCTCGCCATT 61.205 61.111 0.00 0.00 0.00 3.16
2425 4723 3.017323 CACGCCATCTCGCCATTC 58.983 61.111 0.00 0.00 0.00 2.67
2426 4724 1.522355 CACGCCATCTCGCCATTCT 60.522 57.895 0.00 0.00 0.00 2.40
2427 4725 1.227380 ACGCCATCTCGCCATTCTC 60.227 57.895 0.00 0.00 0.00 2.87
2428 4726 1.068753 CGCCATCTCGCCATTCTCT 59.931 57.895 0.00 0.00 0.00 3.10
2429 4727 0.531532 CGCCATCTCGCCATTCTCTT 60.532 55.000 0.00 0.00 0.00 2.85
2430 4728 0.942962 GCCATCTCGCCATTCTCTTG 59.057 55.000 0.00 0.00 0.00 3.02
2431 4729 0.942962 CCATCTCGCCATTCTCTTGC 59.057 55.000 0.00 0.00 0.00 4.01
2432 4730 0.942962 CATCTCGCCATTCTCTTGCC 59.057 55.000 0.00 0.00 0.00 4.52
2433 4731 0.835941 ATCTCGCCATTCTCTTGCCT 59.164 50.000 0.00 0.00 0.00 4.75
2434 4732 1.485124 TCTCGCCATTCTCTTGCCTA 58.515 50.000 0.00 0.00 0.00 3.93
2435 4733 2.042464 TCTCGCCATTCTCTTGCCTAT 58.958 47.619 0.00 0.00 0.00 2.57
2436 4734 2.435805 TCTCGCCATTCTCTTGCCTATT 59.564 45.455 0.00 0.00 0.00 1.73
2437 4735 2.805099 CTCGCCATTCTCTTGCCTATTC 59.195 50.000 0.00 0.00 0.00 1.75
2438 4736 2.435805 TCGCCATTCTCTTGCCTATTCT 59.564 45.455 0.00 0.00 0.00 2.40
2439 4737 3.118261 TCGCCATTCTCTTGCCTATTCTT 60.118 43.478 0.00 0.00 0.00 2.52
2440 4738 3.629398 CGCCATTCTCTTGCCTATTCTTT 59.371 43.478 0.00 0.00 0.00 2.52
2441 4739 4.096984 CGCCATTCTCTTGCCTATTCTTTT 59.903 41.667 0.00 0.00 0.00 2.27
2442 4740 5.346522 GCCATTCTCTTGCCTATTCTTTTG 58.653 41.667 0.00 0.00 0.00 2.44
2443 4741 5.126061 GCCATTCTCTTGCCTATTCTTTTGA 59.874 40.000 0.00 0.00 0.00 2.69
2444 4742 6.350445 GCCATTCTCTTGCCTATTCTTTTGAA 60.350 38.462 0.00 0.00 43.30 2.69
2445 4743 7.605449 CCATTCTCTTGCCTATTCTTTTGAAA 58.395 34.615 0.00 0.00 42.31 2.69
2446 4744 7.758528 CCATTCTCTTGCCTATTCTTTTGAAAG 59.241 37.037 0.00 0.00 42.31 2.62
2447 4745 8.517878 CATTCTCTTGCCTATTCTTTTGAAAGA 58.482 33.333 2.16 2.16 42.31 2.52
2448 4746 7.678947 TCTCTTGCCTATTCTTTTGAAAGAG 57.321 36.000 6.32 0.00 45.01 2.85
2449 4747 7.453393 TCTCTTGCCTATTCTTTTGAAAGAGA 58.547 34.615 6.30 6.30 45.01 3.10
2481 4779 6.599244 CCTGTTACCTTGTGATGTGTAATGAT 59.401 38.462 0.00 0.00 0.00 2.45
2604 4902 1.321016 CAACGTCATCAAGCAAAGCG 58.679 50.000 0.00 0.00 0.00 4.68
2678 4976 5.297776 AGTTGCTATATGTGCTGATTGTTCC 59.702 40.000 4.57 0.00 0.00 3.62
2680 4978 6.173427 TGCTATATGTGCTGATTGTTCCTA 57.827 37.500 4.57 0.00 0.00 2.94
2705 5003 8.112016 ACTAGATTATACGAATAAGCAGCAGA 57.888 34.615 0.00 0.00 36.60 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 1.006043 CCTAGTGGACTGGACTGGAGA 59.994 57.143 0.00 0.00 34.57 3.71
88 89 1.479709 CCTAGTGGACTGGACTGGAG 58.520 60.000 0.00 0.00 34.57 3.86
184 185 5.598830 TGAGAAACAGAGGAAGACTTGTAGT 59.401 40.000 0.00 0.00 0.00 2.73
185 186 6.090483 TGAGAAACAGAGGAAGACTTGTAG 57.910 41.667 0.00 0.00 0.00 2.74
186 187 6.479972 TTGAGAAACAGAGGAAGACTTGTA 57.520 37.500 0.00 0.00 0.00 2.41
187 188 5.359194 TTGAGAAACAGAGGAAGACTTGT 57.641 39.130 0.00 0.00 0.00 3.16
188 189 6.683974 TTTTGAGAAACAGAGGAAGACTTG 57.316 37.500 0.00 0.00 0.00 3.16
218 219 7.376335 AGGAAGAGGTAGACTTGTAGTTTTT 57.624 36.000 0.00 0.00 0.00 1.94
219 220 6.997942 AGGAAGAGGTAGACTTGTAGTTTT 57.002 37.500 0.00 0.00 0.00 2.43
220 221 6.997942 AAGGAAGAGGTAGACTTGTAGTTT 57.002 37.500 0.00 0.00 0.00 2.66
221 222 6.997942 AAAGGAAGAGGTAGACTTGTAGTT 57.002 37.500 0.00 0.00 0.00 2.24
233 234 8.881262 TCTGTTTTCTTATCTAAAGGAAGAGGT 58.119 33.333 0.00 0.00 31.16 3.85
447 509 1.282157 AGCAGGAATAAGCGAAACCCT 59.718 47.619 0.00 0.00 35.48 4.34
767 842 8.463607 CCGGAAATCTAAGGCTTATTTTGTTTA 58.536 33.333 15.82 0.00 0.00 2.01
790 892 2.047844 CACTCACAGACAGCCCGG 60.048 66.667 0.00 0.00 0.00 5.73
804 906 0.767375 ATGGAGCCAAGACACACACT 59.233 50.000 0.00 0.00 0.00 3.55
808 910 1.133823 ACACAATGGAGCCAAGACACA 60.134 47.619 0.00 0.00 0.00 3.72
809 911 1.609208 ACACAATGGAGCCAAGACAC 58.391 50.000 0.00 0.00 0.00 3.67
810 912 2.363306 AACACAATGGAGCCAAGACA 57.637 45.000 0.00 0.00 0.00 3.41
811 913 3.568007 TGTAAACACAATGGAGCCAAGAC 59.432 43.478 0.00 0.00 0.00 3.01
812 914 3.826524 TGTAAACACAATGGAGCCAAGA 58.173 40.909 0.00 0.00 0.00 3.02
1139 1638 3.602483 TCAAACAGACCTTAATACGGGC 58.398 45.455 0.00 0.00 0.00 6.13
1240 1780 1.899814 AGACCGGTCAGCAGTAAATCA 59.100 47.619 35.00 0.00 0.00 2.57
1278 1825 4.340666 AGAGAGCTGAAATAGAAGCGATCA 59.659 41.667 0.00 0.00 44.34 2.92
1587 2151 2.413351 CTCGATCATCGCACCCGT 59.587 61.111 0.80 0.00 40.21 5.28
1927 2491 8.974408 GTTTAAAATACGCAAATCAGGAGTTTT 58.026 29.630 0.00 0.00 0.00 2.43
1957 2521 2.271800 GAAATACTGCGACTCCCAGTG 58.728 52.381 6.61 0.00 43.01 3.66
2118 3967 6.470557 TTAGTTTCCACGGAATACTTTTCG 57.529 37.500 14.60 0.00 39.85 3.46
2189 4487 7.961827 CACTTGTTGCTCAAATTTTGCTAAAAA 59.038 29.630 12.38 0.00 35.48 1.94
2190 4488 7.462731 CACTTGTTGCTCAAATTTTGCTAAAA 58.537 30.769 12.38 6.99 35.48 1.52
2191 4489 7.002816 CACTTGTTGCTCAAATTTTGCTAAA 57.997 32.000 12.38 0.00 35.48 1.85
2192 4490 6.586868 CACTTGTTGCTCAAATTTTGCTAA 57.413 33.333 12.38 0.00 35.48 3.09
2207 4505 3.325870 TGTAATCCTCTCGCACTTGTTG 58.674 45.455 0.00 0.00 0.00 3.33
2208 4506 3.006967 ACTGTAATCCTCTCGCACTTGTT 59.993 43.478 0.00 0.00 0.00 2.83
2209 4507 2.563179 ACTGTAATCCTCTCGCACTTGT 59.437 45.455 0.00 0.00 0.00 3.16
2210 4508 3.182967 GACTGTAATCCTCTCGCACTTG 58.817 50.000 0.00 0.00 0.00 3.16
2211 4509 2.826128 TGACTGTAATCCTCTCGCACTT 59.174 45.455 0.00 0.00 0.00 3.16
2212 4510 2.447443 TGACTGTAATCCTCTCGCACT 58.553 47.619 0.00 0.00 0.00 4.40
2213 4511 2.941453 TGACTGTAATCCTCTCGCAC 57.059 50.000 0.00 0.00 0.00 5.34
2214 4512 3.953712 TTTGACTGTAATCCTCTCGCA 57.046 42.857 0.00 0.00 0.00 5.10
2215 4513 6.903883 TTATTTTGACTGTAATCCTCTCGC 57.096 37.500 0.00 0.00 0.00 5.03
2216 4514 8.077836 GGATTATTTTGACTGTAATCCTCTCG 57.922 38.462 13.45 0.00 45.28 4.04
2249 4547 6.942005 TGCTCAGATAAAATTCCACTCTTCAA 59.058 34.615 0.00 0.00 0.00 2.69
2270 4568 3.795623 AATGCCATGTGAAGATTGCTC 57.204 42.857 0.00 0.00 0.00 4.26
2271 4569 3.067742 GCTAATGCCATGTGAAGATTGCT 59.932 43.478 0.00 0.00 0.00 3.91
2309 4607 2.770164 ACGCACAGATAAAGCTCCTT 57.230 45.000 0.00 0.00 0.00 3.36
2340 4638 6.874134 TGAATCTCTAACCTGACTAGCAAAAC 59.126 38.462 0.00 0.00 0.00 2.43
2347 4645 6.602406 GTGTACCTGAATCTCTAACCTGACTA 59.398 42.308 0.00 0.00 0.00 2.59
2368 4666 7.126061 TCTTCATAGATTTCAGGAGAGGTGTA 58.874 38.462 0.00 0.00 0.00 2.90
2392 4690 0.798776 CGTGCAACAATGAGGTCCTC 59.201 55.000 12.40 12.40 35.74 3.71
2419 4717 5.126061 TCAAAAGAATAGGCAAGAGAATGGC 59.874 40.000 0.00 0.00 45.57 4.40
2420 4718 6.764308 TCAAAAGAATAGGCAAGAGAATGG 57.236 37.500 0.00 0.00 0.00 3.16
2421 4719 8.517878 TCTTTCAAAAGAATAGGCAAGAGAATG 58.482 33.333 2.74 0.00 41.75 2.67
2422 4720 8.641498 TCTTTCAAAAGAATAGGCAAGAGAAT 57.359 30.769 2.74 0.00 41.75 2.40
2423 4721 7.939039 TCTCTTTCAAAAGAATAGGCAAGAGAA 59.061 33.333 6.64 0.00 43.84 2.87
2424 4722 7.453393 TCTCTTTCAAAAGAATAGGCAAGAGA 58.547 34.615 6.64 4.54 43.84 3.10
2425 4723 7.678947 TCTCTTTCAAAAGAATAGGCAAGAG 57.321 36.000 6.64 0.00 43.84 2.85
2426 4724 7.721399 ACTTCTCTTTCAAAAGAATAGGCAAGA 59.279 33.333 6.64 0.00 43.84 3.02
2427 4725 7.880105 ACTTCTCTTTCAAAAGAATAGGCAAG 58.120 34.615 6.64 5.18 43.84 4.01
2428 4726 7.823745 ACTTCTCTTTCAAAAGAATAGGCAA 57.176 32.000 6.64 0.00 43.84 4.52
2429 4727 8.918202 TTACTTCTCTTTCAAAAGAATAGGCA 57.082 30.769 6.64 0.00 43.84 4.75
2430 4728 9.995957 GATTACTTCTCTTTCAAAAGAATAGGC 57.004 33.333 6.64 0.00 43.84 3.93
2434 4732 9.579932 ACAGGATTACTTCTCTTTCAAAAGAAT 57.420 29.630 6.64 0.00 43.84 2.40
2435 4733 8.980481 ACAGGATTACTTCTCTTTCAAAAGAA 57.020 30.769 6.64 3.12 43.84 2.52
2436 4734 8.980481 AACAGGATTACTTCTCTTTCAAAAGA 57.020 30.769 5.17 5.17 42.41 2.52
2438 4736 9.063615 GGTAACAGGATTACTTCTCTTTCAAAA 57.936 33.333 0.00 0.00 0.00 2.44
2439 4737 8.437575 AGGTAACAGGATTACTTCTCTTTCAAA 58.562 33.333 0.00 0.00 41.41 2.69
2440 4738 7.974504 AGGTAACAGGATTACTTCTCTTTCAA 58.025 34.615 0.00 0.00 41.41 2.69
2441 4739 7.554959 AGGTAACAGGATTACTTCTCTTTCA 57.445 36.000 0.00 0.00 41.41 2.69
2442 4740 7.878644 ACAAGGTAACAGGATTACTTCTCTTTC 59.121 37.037 0.00 0.00 41.41 2.62
2443 4741 7.661847 CACAAGGTAACAGGATTACTTCTCTTT 59.338 37.037 0.00 0.00 41.41 2.52
2444 4742 7.016268 TCACAAGGTAACAGGATTACTTCTCTT 59.984 37.037 0.00 0.00 41.41 2.85
2445 4743 6.497259 TCACAAGGTAACAGGATTACTTCTCT 59.503 38.462 0.00 0.00 41.41 3.10
2446 4744 6.698380 TCACAAGGTAACAGGATTACTTCTC 58.302 40.000 0.00 0.00 41.41 2.87
2447 4745 6.681729 TCACAAGGTAACAGGATTACTTCT 57.318 37.500 0.00 0.00 41.41 2.85
2448 4746 6.879458 ACATCACAAGGTAACAGGATTACTTC 59.121 38.462 0.00 0.00 41.41 3.01
2449 4747 6.655003 CACATCACAAGGTAACAGGATTACTT 59.345 38.462 0.00 0.00 41.41 2.24
2481 4779 7.764443 GCAAAGCCTATCATATATTCTCGGTAA 59.236 37.037 0.00 0.00 0.00 2.85
2604 4902 7.094762 GGGCTTATAATAGCAACCAACTATCAC 60.095 40.741 0.00 0.00 43.02 3.06
2678 4976 9.497030 CTGCTGCTTATTCGTATAATCTAGTAG 57.503 37.037 0.00 0.00 0.00 2.57
2680 4978 8.024285 GTCTGCTGCTTATTCGTATAATCTAGT 58.976 37.037 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.