Multiple sequence alignment - TraesCS1B01G363900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G363900 chr1B 100.000 2980 0 0 3338 6317 592650897 592653876 0.000000e+00 5504.0
1 TraesCS1B01G363900 chr1B 100.000 2318 0 0 1 2318 592647560 592649877 0.000000e+00 4281.0
2 TraesCS1B01G363900 chr1B 87.536 345 35 8 5706 6044 8961237 8961579 5.940000e-105 392.0
3 TraesCS1B01G363900 chr1B 84.524 420 40 16 5707 6104 31225262 31225678 5.940000e-105 392.0
4 TraesCS1B01G363900 chr1B 95.122 205 7 3 2007 2209 654526474 654526271 2.840000e-83 320.0
5 TraesCS1B01G363900 chr1B 92.241 116 9 0 3537 3652 618911253 618911138 1.410000e-36 165.0
6 TraesCS1B01G363900 chr1B 94.382 89 4 1 1928 2015 654526472 654526384 1.100000e-27 135.0
7 TraesCS1B01G363900 chr1B 90.909 88 7 1 1929 2015 327486153 327486066 4.000000e-22 117.0
8 TraesCS1B01G363900 chr1B 98.276 58 1 0 4635 4692 592652136 592652193 1.120000e-17 102.0
9 TraesCS1B01G363900 chr1B 98.276 58 1 0 4577 4634 592652194 592652251 1.120000e-17 102.0
10 TraesCS1B01G363900 chr1B 92.157 51 4 0 3338 3388 654526227 654526177 8.780000e-09 73.1
11 TraesCS1B01G363900 chr1A 92.993 999 47 13 3648 4634 534260933 534259946 0.000000e+00 1435.0
12 TraesCS1B01G363900 chr1A 88.958 969 36 24 3 934 534262946 534262012 0.000000e+00 1131.0
13 TraesCS1B01G363900 chr1A 94.712 416 17 5 4942 5356 534259742 534259331 5.340000e-180 641.0
14 TraesCS1B01G363900 chr1A 95.131 267 11 2 2007 2272 324381523 324381788 2.720000e-113 420.0
15 TraesCS1B01G363900 chr1A 85.946 370 28 3 1526 1892 534261362 534261014 2.150000e-99 374.0
16 TraesCS1B01G363900 chr1A 88.462 286 16 8 5381 5654 534259335 534259055 4.720000e-86 329.0
17 TraesCS1B01G363900 chr1A 88.803 259 28 1 4635 4893 534260003 534259746 3.680000e-82 316.0
18 TraesCS1B01G363900 chr1A 81.250 416 54 16 1137 1534 534261803 534261394 1.320000e-81 315.0
19 TraesCS1B01G363900 chr1A 88.327 257 26 3 6055 6310 575546480 575546733 7.960000e-79 305.0
20 TraesCS1B01G363900 chr1A 93.388 121 6 2 3529 3649 541999697 541999815 1.810000e-40 178.0
21 TraesCS1B01G363900 chr1A 88.618 123 11 3 3529 3649 53191063 53191184 5.100000e-31 147.0
22 TraesCS1B01G363900 chr1A 97.727 44 1 0 1887 1930 534260971 534260928 6.790000e-10 76.8
23 TraesCS1B01G363900 chr1D 89.655 725 44 13 4940 5654 437424767 437425470 0.000000e+00 894.0
24 TraesCS1B01G363900 chr1D 90.312 640 46 9 3648 4282 437423234 437423862 0.000000e+00 824.0
25 TraesCS1B01G363900 chr1D 82.082 826 75 43 743 1531 437422037 437422826 6.910000e-179 638.0
26 TraesCS1B01G363900 chr1D 98.592 284 4 0 1 284 437421397 437421680 2.630000e-138 503.0
27 TraesCS1B01G363900 chr1D 92.542 295 17 3 4635 4924 437424489 437424783 9.790000e-113 418.0
28 TraesCS1B01G363900 chr1D 81.522 368 27 10 1526 1892 437422861 437423188 1.350000e-66 265.0
29 TraesCS1B01G363900 chr1D 93.333 150 8 1 4274 4423 437424213 437424360 2.960000e-53 220.0
30 TraesCS1B01G363900 chr1D 88.360 189 12 3 4456 4634 437424358 437424546 1.070000e-52 219.0
31 TraesCS1B01G363900 chr1D 89.565 115 10 2 3532 3645 199849393 199849506 1.840000e-30 145.0
32 TraesCS1B01G363900 chr2B 94.805 308 14 2 2011 2317 111370282 111369976 4.430000e-131 479.0
33 TraesCS1B01G363900 chr2B 93.704 270 14 3 2011 2279 716529679 716529946 9.860000e-108 401.0
34 TraesCS1B01G363900 chr2B 86.994 346 36 9 5707 6044 228887057 228886713 1.290000e-101 381.0
35 TraesCS1B01G363900 chr2B 95.652 92 3 1 1925 2015 111370287 111370196 5.100000e-31 147.0
36 TraesCS1B01G363900 chr2B 93.407 91 5 1 1926 2015 716529675 716529765 3.970000e-27 134.0
37 TraesCS1B01G363900 chr2B 97.561 41 1 0 3338 3378 111369913 111369873 3.160000e-08 71.3
38 TraesCS1B01G363900 chr3B 94.788 307 13 3 2008 2313 764854067 764854371 5.730000e-130 475.0
39 TraesCS1B01G363900 chr3B 93.491 169 9 2 2005 2172 459782798 459782965 3.780000e-62 250.0
40 TraesCS1B01G363900 chr3B 91.667 132 3 1 3511 3634 764855090 764855221 6.510000e-40 176.0
41 TraesCS1B01G363900 chr3B 95.506 89 3 1 1928 2015 764854068 764854156 2.370000e-29 141.0
42 TraesCS1B01G363900 chr3B 93.258 89 5 1 1928 2015 459782802 459782890 5.140000e-26 130.0
43 TraesCS1B01G363900 chr4D 85.584 437 41 11 5707 6125 268124650 268124218 7.520000e-119 438.0
44 TraesCS1B01G363900 chr4D 97.368 76 2 0 3348 3423 96523886 96523961 5.140000e-26 130.0
45 TraesCS1B01G363900 chr6B 94.286 280 11 5 2001 2278 151602785 151602509 2.110000e-114 424.0
46 TraesCS1B01G363900 chr6B 84.450 418 43 8 5707 6104 719755478 719755893 5.940000e-105 392.0
47 TraesCS1B01G363900 chr6B 81.752 411 48 19 5723 6113 551039173 551039576 1.020000e-82 318.0
48 TraesCS1B01G363900 chr6B 95.122 82 4 0 1928 2009 151602776 151602695 5.140000e-26 130.0
49 TraesCS1B01G363900 chr4A 95.489 266 10 2 2011 2275 668280275 668280011 2.110000e-114 424.0
50 TraesCS1B01G363900 chr4A 97.619 84 2 0 1926 2009 668280279 668280196 1.840000e-30 145.0
51 TraesCS1B01G363900 chr4A 89.474 76 8 0 3348 3423 482133205 482133130 5.210000e-16 97.1
52 TraesCS1B01G363900 chr7B 79.770 608 95 18 5706 6289 444174320 444174923 3.520000e-112 416.0
53 TraesCS1B01G363900 chr7B 84.397 423 42 14 5707 6107 357927759 357927339 1.650000e-105 394.0
54 TraesCS1B01G363900 chr3D 81.296 540 76 18 5796 6317 21446971 21446439 1.270000e-111 414.0
55 TraesCS1B01G363900 chr3D 78.193 321 48 13 5916 6222 528809793 528810105 1.080000e-42 185.0
56 TraesCS1B01G363900 chr4B 83.660 459 49 16 5707 6141 503993691 503994147 5.890000e-110 409.0
57 TraesCS1B01G363900 chr4B 96.053 76 3 0 3348 3423 136532766 136532841 2.390000e-24 124.0
58 TraesCS1B01G363900 chr5B 94.656 262 10 4 2011 2270 403428449 403428708 2.740000e-108 403.0
59 TraesCS1B01G363900 chr5B 86.994 346 37 7 5706 6044 292719730 292719386 3.570000e-102 383.0
60 TraesCS1B01G363900 chr5B 92.941 85 4 2 1926 2009 403428445 403428528 8.600000e-24 122.0
61 TraesCS1B01G363900 chrUn 82.143 476 69 12 5856 6317 10698135 10697662 1.650000e-105 394.0
62 TraesCS1B01G363900 chrUn 78.960 423 60 21 5707 6110 114241006 114240594 1.750000e-65 261.0
63 TraesCS1B01G363900 chrUn 97.959 98 2 0 3537 3634 40535460 40535557 3.030000e-38 171.0
64 TraesCS1B01G363900 chrUn 96.939 98 3 0 3537 3634 459662245 459662148 1.410000e-36 165.0
65 TraesCS1B01G363900 chrUn 97.561 41 1 0 3338 3378 473127802 473127842 3.160000e-08 71.3
66 TraesCS1B01G363900 chrUn 91.667 48 4 0 3338 3385 473127880 473127927 4.090000e-07 67.6
67 TraesCS1B01G363900 chrUn 91.667 48 4 0 3338 3385 475075500 475075547 4.090000e-07 67.6
68 TraesCS1B01G363900 chr5D 87.032 347 33 10 5706 6044 545719023 545719365 1.290000e-101 381.0
69 TraesCS1B01G363900 chr2A 83.607 183 28 2 2094 2275 141899383 141899202 3.030000e-38 171.0
70 TraesCS1B01G363900 chr5A 91.525 118 9 1 3532 3649 609286588 609286472 1.820000e-35 161.0
71 TraesCS1B01G363900 chr2D 94.175 103 4 2 3532 3634 116808821 116808721 8.480000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G363900 chr1B 592647560 592653876 6316 False 2497.250 5504 99.138000 1 6317 4 chr1B.!!$F3 6316
1 TraesCS1B01G363900 chr1A 534259055 534262946 3891 True 577.225 1435 89.856375 3 5654 8 chr1A.!!$R1 5651
2 TraesCS1B01G363900 chr1D 437421397 437425470 4073 False 497.625 894 89.549750 1 5654 8 chr1D.!!$F2 5653
3 TraesCS1B01G363900 chr3B 764854067 764855221 1154 False 264.000 475 93.987000 1928 3634 3 chr3B.!!$F2 1706
4 TraesCS1B01G363900 chr7B 444174320 444174923 603 False 416.000 416 79.770000 5706 6289 1 chr7B.!!$F1 583
5 TraesCS1B01G363900 chr3D 21446439 21446971 532 True 414.000 414 81.296000 5796 6317 1 chr3D.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 813 0.254747 CGGGACACCTCTCTCTCTCT 59.745 60.0 0.0 0.0 33.28 3.10 F
2014 2238 0.108520 CGACCTAGCGGTAAAGCCAA 60.109 55.0 0.0 0.0 45.73 4.52 F
2133 2357 0.105964 CTGGTGTCCGTTTCAGTCCA 59.894 55.0 0.0 0.0 0.00 4.02 F
2134 2358 0.179067 TGGTGTCCGTTTCAGTCCAC 60.179 55.0 0.0 0.0 0.00 4.02 F
2153 2377 0.614697 CCCCAACCCCAAATCCAGAC 60.615 60.0 0.0 0.0 0.00 3.51 F
3674 3973 0.163146 GTACTTTCGCTTGTGCCGTC 59.837 55.0 0.0 0.0 35.36 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 2250 0.111253 GGATGGGTCATGGATGGGTC 59.889 60.000 0.00 0.00 0.00 4.46 R
3634 3933 0.323629 TCCTAAGGCCAACTCCAACG 59.676 55.000 5.01 0.00 0.00 4.10 R
3651 3950 1.130561 GGCACAAGCGAAAGTACATCC 59.869 52.381 0.00 0.00 43.41 3.51 R
3652 3951 1.201921 CGGCACAAGCGAAAGTACATC 60.202 52.381 0.00 0.00 43.41 3.06 R
3775 4074 2.223249 CCCATGTTTTATCAACTCGCCG 60.223 50.000 0.00 0.00 0.00 6.46 R
5370 6048 0.242555 TGTGAACGTCTAGATGCGCA 59.757 50.000 14.96 14.96 0.00 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
342 361 4.137872 CGGCCGAAACCCTAGCGA 62.138 66.667 24.07 0.00 0.00 4.93
343 362 2.510918 GGCCGAAACCCTAGCGAC 60.511 66.667 0.00 0.00 0.00 5.19
344 363 2.884207 GCCGAAACCCTAGCGACG 60.884 66.667 0.00 0.00 0.00 5.12
345 364 2.884207 CCGAAACCCTAGCGACGC 60.884 66.667 13.03 13.03 0.00 5.19
346 365 3.245315 CGAAACCCTAGCGACGCG 61.245 66.667 15.18 3.53 0.00 6.01
425 451 2.614013 AGGTGGGTCATGTCCCCC 60.614 66.667 23.23 21.65 46.48 5.40
433 459 2.272146 CATGTCCCCCAGGAACCG 59.728 66.667 0.00 0.00 46.38 4.44
452 478 3.386867 GAAGGCGTTCATGGCTGCG 62.387 63.158 14.07 0.00 45.07 5.18
557 583 3.407967 GGAATGGCGGAGGGGACA 61.408 66.667 0.00 0.00 0.00 4.02
777 810 2.419739 GGCGGGACACCTCTCTCTC 61.420 68.421 0.00 0.00 33.28 3.20
778 811 1.379309 GCGGGACACCTCTCTCTCT 60.379 63.158 0.00 0.00 33.28 3.10
779 812 1.381165 GCGGGACACCTCTCTCTCTC 61.381 65.000 0.00 0.00 33.28 3.20
780 813 0.254747 CGGGACACCTCTCTCTCTCT 59.745 60.000 0.00 0.00 33.28 3.10
794 827 1.447317 CTCTCTGCTCGGCTCTCCTC 61.447 65.000 0.00 0.00 0.00 3.71
841 874 3.125573 TCGCCTGGAGTCTCGTCG 61.126 66.667 0.00 0.00 0.00 5.12
901 946 1.841556 ACCGTGCTCTCCTTTCCCA 60.842 57.895 0.00 0.00 0.00 4.37
968 1013 2.354072 CCTCGAGGATTCGCTCGC 60.354 66.667 28.21 0.00 46.28 5.03
984 1029 3.889044 GCTCGTCCGATCGCCTGA 61.889 66.667 10.32 5.43 0.00 3.86
985 1030 3.034878 CTCGTCCGATCGCCTGAT 58.965 61.111 10.32 0.00 37.60 2.90
986 1031 1.081774 CTCGTCCGATCGCCTGATC 60.082 63.158 10.32 0.00 46.24 2.92
1032 1077 0.521735 GATCCACGCCCAAAGTTGAC 59.478 55.000 0.00 0.00 0.00 3.18
1037 1082 0.179051 ACGCCCAAAGTTGACGGTAA 60.179 50.000 9.99 0.00 33.70 2.85
1038 1083 0.945813 CGCCCAAAGTTGACGGTAAA 59.054 50.000 0.00 0.00 0.00 2.01
1049 1094 6.787085 AGTTGACGGTAAAATCTTCTCTTG 57.213 37.500 0.00 0.00 0.00 3.02
1058 1123 4.780275 AAATCTTCTCTTGCTTGCTTCC 57.220 40.909 0.00 0.00 0.00 3.46
1065 1130 2.483491 CTCTTGCTTGCTTCCTCTTCAC 59.517 50.000 0.00 0.00 0.00 3.18
1066 1131 1.538950 CTTGCTTGCTTCCTCTTCACC 59.461 52.381 0.00 0.00 0.00 4.02
1067 1132 0.473755 TGCTTGCTTCCTCTTCACCA 59.526 50.000 0.00 0.00 0.00 4.17
1086 1151 2.551459 CCAGTGCTTCTCTTCTTGTTGG 59.449 50.000 0.00 0.00 0.00 3.77
1092 1157 3.067320 GCTTCTCTTCTTGTTGGCTTGTT 59.933 43.478 0.00 0.00 0.00 2.83
1093 1158 4.604976 CTTCTCTTCTTGTTGGCTTGTTG 58.395 43.478 0.00 0.00 0.00 3.33
1107 1172 4.577834 GCTTGTTGCCTGGTTAGTTAAA 57.422 40.909 0.00 0.00 35.15 1.52
1109 1174 5.353111 GCTTGTTGCCTGGTTAGTTAAAAA 58.647 37.500 0.00 0.00 35.15 1.94
1141 1225 4.289410 CCATTGTATCATGGGAGTATGGGA 59.711 45.833 0.00 0.00 34.39 4.37
1173 1257 5.672503 GGAGGAGTAAGGTTAACTCATTCC 58.327 45.833 5.42 6.78 44.25 3.01
1180 1265 7.844009 AGTAAGGTTAACTCATTCCGTTGATA 58.156 34.615 5.42 0.00 0.00 2.15
1202 1287 7.494625 TGATATGTTTCCTCGGCTTTTACTTAG 59.505 37.037 0.00 0.00 0.00 2.18
1212 1297 7.225931 CCTCGGCTTTTACTTAGTTGCATAATA 59.774 37.037 0.00 0.00 0.00 0.98
1214 1299 9.116067 TCGGCTTTTACTTAGTTGCATAATAAT 57.884 29.630 0.00 0.00 0.00 1.28
1215 1300 9.169468 CGGCTTTTACTTAGTTGCATAATAATG 57.831 33.333 0.00 0.00 36.09 1.90
1256 1341 5.525199 ACTGCTACCCGTTTAAATTTGTTG 58.475 37.500 0.00 0.00 0.00 3.33
1349 1442 2.409152 TTCGTTGCCGGAATTTTGTC 57.591 45.000 5.05 0.00 33.95 3.18
1358 1451 3.821841 CCGGAATTTTGTCAGCACTTAC 58.178 45.455 0.00 0.00 0.00 2.34
1360 1453 4.378459 CCGGAATTTTGTCAGCACTTACTC 60.378 45.833 0.00 0.00 0.00 2.59
1402 1495 0.535797 CTCCTGGGGACGAGGTTTAC 59.464 60.000 0.00 0.00 32.49 2.01
1413 1506 3.893720 ACGAGGTTTACTCAGTGTTACG 58.106 45.455 0.00 0.00 46.98 3.18
1478 1584 4.037446 GTGTGCTGAGTAATTTTTGGTCCA 59.963 41.667 0.00 0.00 0.00 4.02
1487 1593 9.707957 TGAGTAATTTTTGGTCCATGGTATATT 57.292 29.630 12.58 6.04 0.00 1.28
1503 1611 4.885325 GGTATATTTTCTTCCCCTTTGCGA 59.115 41.667 0.00 0.00 0.00 5.10
1517 1625 2.010145 TTGCGATCAGGCTTACAGTC 57.990 50.000 0.00 0.00 0.00 3.51
1572 1721 6.413052 AGTCTGCAGTGTAAATCAGATGAAT 58.587 36.000 14.67 0.00 37.81 2.57
1576 1725 8.579006 TCTGCAGTGTAAATCAGATGAATTTTT 58.421 29.630 14.67 0.00 31.35 1.94
1600 1763 5.500234 TCATCTAGGACCACAGAAAAATGG 58.500 41.667 0.00 0.00 42.13 3.16
1613 1776 9.191995 CCACAGAAAAATGGTACTAATTTCAAC 57.808 33.333 17.30 8.94 33.53 3.18
1614 1777 9.743057 CACAGAAAAATGGTACTAATTTCAACA 57.257 29.630 17.30 0.00 33.53 3.33
1622 1785 9.855021 AATGGTACTAATTTCAACATAACTTGC 57.145 29.630 0.00 0.00 0.00 4.01
1636 1799 2.124011 ACTTGCAAGCAAATGTGACG 57.876 45.000 26.27 0.00 35.33 4.35
1652 1815 5.598416 TGTGACGGTTCATTCTCTGATAT 57.402 39.130 0.00 0.00 33.11 1.63
1654 1817 6.739112 TGTGACGGTTCATTCTCTGATATAG 58.261 40.000 0.00 0.00 33.11 1.31
1716 1879 4.282950 TGCTAACACCGTATCTAGTTCG 57.717 45.455 0.00 0.00 0.00 3.95
1717 1880 3.691118 TGCTAACACCGTATCTAGTTCGT 59.309 43.478 0.00 0.00 0.00 3.85
1718 1881 4.033684 GCTAACACCGTATCTAGTTCGTG 58.966 47.826 0.00 0.00 0.00 4.35
1719 1882 3.498927 AACACCGTATCTAGTTCGTGG 57.501 47.619 0.00 0.00 0.00 4.94
1720 1883 2.440409 ACACCGTATCTAGTTCGTGGT 58.560 47.619 0.00 0.00 0.00 4.16
1721 1884 3.609853 ACACCGTATCTAGTTCGTGGTA 58.390 45.455 0.00 0.00 0.00 3.25
1722 1885 3.375299 ACACCGTATCTAGTTCGTGGTAC 59.625 47.826 0.00 0.00 0.00 3.34
1723 1886 3.624861 CACCGTATCTAGTTCGTGGTACT 59.375 47.826 0.00 0.00 0.00 2.73
1724 1887 4.095483 CACCGTATCTAGTTCGTGGTACTT 59.905 45.833 0.00 0.00 0.00 2.24
1725 1888 4.702131 ACCGTATCTAGTTCGTGGTACTTT 59.298 41.667 0.00 0.00 0.00 2.66
1726 1889 5.880332 ACCGTATCTAGTTCGTGGTACTTTA 59.120 40.000 0.00 0.00 0.00 1.85
1727 1890 6.543831 ACCGTATCTAGTTCGTGGTACTTTAT 59.456 38.462 0.00 0.00 0.00 1.40
1728 1891 7.715249 ACCGTATCTAGTTCGTGGTACTTTATA 59.285 37.037 0.00 0.00 0.00 0.98
1729 1892 8.725148 CCGTATCTAGTTCGTGGTACTTTATAT 58.275 37.037 0.00 0.00 0.00 0.86
1730 1893 9.752274 CGTATCTAGTTCGTGGTACTTTATATC 57.248 37.037 0.00 0.00 0.00 1.63
1737 1900 8.341173 AGTTCGTGGTACTTTATATCTAGTTCG 58.659 37.037 0.00 0.00 0.00 3.95
1761 1924 6.862090 CGTGGTACTTTATATCTAGTTCCTGC 59.138 42.308 11.55 6.32 34.15 4.85
1798 1961 2.880890 AGCATTTCAGAAAGACGCACTT 59.119 40.909 14.10 0.00 40.98 3.16
1804 1967 4.404507 TCAGAAAGACGCACTTATTTGC 57.595 40.909 0.00 0.00 37.93 3.68
1805 1968 3.812609 TCAGAAAGACGCACTTATTTGCA 59.187 39.130 0.00 0.00 43.15 4.08
1919 2143 3.153369 TCTGCTCAAATTACTGGCCAA 57.847 42.857 7.01 0.00 0.00 4.52
1930 2154 2.491675 ACTGGCCAAGTAACTTAGGC 57.508 50.000 7.01 8.12 46.28 3.93
2002 2226 5.517770 CCGTTTGAGGTAAAATACGACCTAG 59.482 44.000 0.00 0.00 46.36 3.02
2009 2233 5.127031 AGGTAAAATACGACCTAGCGGTAAA 59.873 40.000 0.00 0.00 45.73 2.01
2010 2234 5.460091 GGTAAAATACGACCTAGCGGTAAAG 59.540 44.000 0.00 0.00 45.73 1.85
2011 2235 2.789491 ATACGACCTAGCGGTAAAGC 57.211 50.000 0.00 0.00 45.73 3.51
2012 2236 0.740737 TACGACCTAGCGGTAAAGCC 59.259 55.000 0.00 0.00 45.73 4.35
2013 2237 1.252904 ACGACCTAGCGGTAAAGCCA 61.253 55.000 0.00 0.00 45.73 4.75
2014 2238 0.108520 CGACCTAGCGGTAAAGCCAA 60.109 55.000 0.00 0.00 45.73 4.52
2015 2239 1.366679 GACCTAGCGGTAAAGCCAAC 58.633 55.000 0.00 0.00 45.73 3.77
2016 2240 0.981943 ACCTAGCGGTAAAGCCAACT 59.018 50.000 0.00 0.00 43.29 3.16
2017 2241 1.066358 ACCTAGCGGTAAAGCCAACTC 60.066 52.381 0.00 0.00 43.29 3.01
2018 2242 1.653151 CTAGCGGTAAAGCCAACTCC 58.347 55.000 0.00 0.00 38.01 3.85
2019 2243 0.978151 TAGCGGTAAAGCCAACTCCA 59.022 50.000 0.00 0.00 38.01 3.86
2020 2244 0.605589 AGCGGTAAAGCCAACTCCAC 60.606 55.000 0.00 0.00 38.01 4.02
2021 2245 1.583495 GCGGTAAAGCCAACTCCACC 61.583 60.000 0.00 0.00 36.97 4.61
2022 2246 1.296056 CGGTAAAGCCAACTCCACCG 61.296 60.000 0.00 0.00 42.93 4.94
2023 2247 1.583495 GGTAAAGCCAACTCCACCGC 61.583 60.000 0.00 0.00 37.17 5.68
2024 2248 0.887387 GTAAAGCCAACTCCACCGCA 60.887 55.000 0.00 0.00 0.00 5.69
2025 2249 0.887387 TAAAGCCAACTCCACCGCAC 60.887 55.000 0.00 0.00 0.00 5.34
2026 2250 4.988598 AGCCAACTCCACCGCACG 62.989 66.667 0.00 0.00 0.00 5.34
2027 2251 4.980805 GCCAACTCCACCGCACGA 62.981 66.667 0.00 0.00 0.00 4.35
2028 2252 3.041940 CCAACTCCACCGCACGAC 61.042 66.667 0.00 0.00 0.00 4.34
2029 2253 3.041940 CAACTCCACCGCACGACC 61.042 66.667 0.00 0.00 0.00 4.79
2030 2254 4.309950 AACTCCACCGCACGACCC 62.310 66.667 0.00 0.00 0.00 4.46
2032 2256 4.082523 CTCCACCGCACGACCCAT 62.083 66.667 0.00 0.00 0.00 4.00
2033 2257 4.077184 TCCACCGCACGACCCATC 62.077 66.667 0.00 0.00 0.00 3.51
2035 2259 4.386951 CACCGCACGACCCATCCA 62.387 66.667 0.00 0.00 0.00 3.41
2036 2260 3.399181 ACCGCACGACCCATCCAT 61.399 61.111 0.00 0.00 0.00 3.41
2037 2261 2.896854 CCGCACGACCCATCCATG 60.897 66.667 0.00 0.00 0.00 3.66
2038 2262 2.186644 CGCACGACCCATCCATGA 59.813 61.111 0.00 0.00 0.00 3.07
2039 2263 2.173669 CGCACGACCCATCCATGAC 61.174 63.158 0.00 0.00 0.00 3.06
2040 2264 1.819632 GCACGACCCATCCATGACC 60.820 63.158 0.00 0.00 0.00 4.02
2041 2265 1.153168 CACGACCCATCCATGACCC 60.153 63.158 0.00 0.00 0.00 4.46
2042 2266 1.615124 ACGACCCATCCATGACCCA 60.615 57.895 0.00 0.00 0.00 4.51
2043 2267 0.988145 ACGACCCATCCATGACCCAT 60.988 55.000 0.00 0.00 0.00 4.00
2044 2268 0.250467 CGACCCATCCATGACCCATC 60.250 60.000 0.00 0.00 0.00 3.51
2045 2269 0.111253 GACCCATCCATGACCCATCC 59.889 60.000 0.00 0.00 0.00 3.51
2046 2270 1.073722 CCCATCCATGACCCATCCG 59.926 63.158 0.00 0.00 0.00 4.18
2047 2271 1.073722 CCATCCATGACCCATCCGG 59.926 63.158 0.00 0.00 37.81 5.14
2055 2279 3.327404 ACCCATCCGGTCCGCTTT 61.327 61.111 5.50 0.00 43.58 3.51
2056 2280 2.045340 CCCATCCGGTCCGCTTTT 60.045 61.111 5.50 0.00 0.00 2.27
2057 2281 1.677633 CCCATCCGGTCCGCTTTTT 60.678 57.895 5.50 0.00 0.00 1.94
2058 2282 1.506262 CCATCCGGTCCGCTTTTTG 59.494 57.895 5.50 0.00 0.00 2.44
2059 2283 1.241315 CCATCCGGTCCGCTTTTTGT 61.241 55.000 5.50 0.00 0.00 2.83
2060 2284 0.168128 CATCCGGTCCGCTTTTTGTC 59.832 55.000 5.50 0.00 0.00 3.18
2061 2285 0.958876 ATCCGGTCCGCTTTTTGTCC 60.959 55.000 5.50 0.00 0.00 4.02
2062 2286 2.554272 CGGTCCGCTTTTTGTCCG 59.446 61.111 0.00 0.00 0.00 4.79
2063 2287 2.248835 CGGTCCGCTTTTTGTCCGT 61.249 57.895 0.00 0.00 34.38 4.69
2064 2288 1.778027 CGGTCCGCTTTTTGTCCGTT 61.778 55.000 0.00 0.00 34.38 4.44
2065 2289 0.382873 GGTCCGCTTTTTGTCCGTTT 59.617 50.000 0.00 0.00 0.00 3.60
2066 2290 1.472990 GTCCGCTTTTTGTCCGTTTG 58.527 50.000 0.00 0.00 0.00 2.93
2067 2291 1.064357 GTCCGCTTTTTGTCCGTTTGA 59.936 47.619 0.00 0.00 0.00 2.69
2068 2292 1.332375 TCCGCTTTTTGTCCGTTTGAG 59.668 47.619 0.00 0.00 0.00 3.02
2069 2293 1.599419 CCGCTTTTTGTCCGTTTGAGG 60.599 52.381 0.00 0.00 0.00 3.86
2070 2294 1.064952 CGCTTTTTGTCCGTTTGAGGT 59.935 47.619 0.00 0.00 0.00 3.85
2071 2295 2.288458 CGCTTTTTGTCCGTTTGAGGTA 59.712 45.455 0.00 0.00 0.00 3.08
2072 2296 3.242804 CGCTTTTTGTCCGTTTGAGGTAA 60.243 43.478 0.00 0.00 0.00 2.85
2073 2297 4.674475 GCTTTTTGTCCGTTTGAGGTAAA 58.326 39.130 0.00 0.00 0.00 2.01
2074 2298 5.286438 GCTTTTTGTCCGTTTGAGGTAAAT 58.714 37.500 0.00 0.00 0.00 1.40
2075 2299 6.440436 GCTTTTTGTCCGTTTGAGGTAAATA 58.560 36.000 0.00 0.00 0.00 1.40
2076 2300 6.361481 GCTTTTTGTCCGTTTGAGGTAAATAC 59.639 38.462 0.00 0.00 0.00 1.89
2077 2301 5.594724 TTTGTCCGTTTGAGGTAAATACG 57.405 39.130 0.00 0.00 0.00 3.06
2078 2302 4.517952 TGTCCGTTTGAGGTAAATACGA 57.482 40.909 0.00 0.00 0.00 3.43
2079 2303 4.236935 TGTCCGTTTGAGGTAAATACGAC 58.763 43.478 0.00 0.00 0.00 4.34
2080 2304 3.614176 GTCCGTTTGAGGTAAATACGACC 59.386 47.826 0.00 0.00 37.22 4.79
2081 2305 2.931969 CCGTTTGAGGTAAATACGACCC 59.068 50.000 0.00 0.00 37.73 4.46
2082 2306 3.587923 CGTTTGAGGTAAATACGACCCA 58.412 45.455 0.00 0.00 37.73 4.51
2083 2307 3.615496 CGTTTGAGGTAAATACGACCCAG 59.385 47.826 0.00 0.00 37.73 4.45
2084 2308 2.973694 TGAGGTAAATACGACCCAGC 57.026 50.000 0.00 0.00 37.73 4.85
2085 2309 1.135527 TGAGGTAAATACGACCCAGCG 59.864 52.381 0.00 0.00 37.73 5.18
2086 2310 0.462789 AGGTAAATACGACCCAGCGG 59.537 55.000 0.00 0.00 37.73 5.52
2088 2312 1.408702 GGTAAATACGACCCAGCGGTA 59.591 52.381 0.00 0.00 44.88 4.02
2089 2313 2.159114 GGTAAATACGACCCAGCGGTAA 60.159 50.000 0.00 0.00 44.88 2.85
2107 2331 3.119743 GGTAATACCCAAACGGACAAAGC 60.120 47.826 0.00 0.00 34.64 3.51
2133 2357 0.105964 CTGGTGTCCGTTTCAGTCCA 59.894 55.000 0.00 0.00 0.00 4.02
2134 2358 0.179067 TGGTGTCCGTTTCAGTCCAC 60.179 55.000 0.00 0.00 0.00 4.02
2152 2376 1.077298 ACCCCAACCCCAAATCCAGA 61.077 55.000 0.00 0.00 0.00 3.86
2153 2377 0.614697 CCCCAACCCCAAATCCAGAC 60.615 60.000 0.00 0.00 0.00 3.51
2176 2400 1.995376 AGTTGGGTCACAAATGGGTC 58.005 50.000 0.00 0.00 41.58 4.46
2215 2439 3.591835 GCTCCTCGGCCTCTCTCG 61.592 72.222 0.00 0.00 0.00 4.04
3369 3593 4.504916 CTGGACGCGCTCCTCAGG 62.505 72.222 22.40 10.60 40.26 3.86
3417 3641 4.500116 GGCGACGTCAGGAGGAGC 62.500 72.222 17.16 8.56 0.00 4.70
3418 3642 4.838486 GCGACGTCAGGAGGAGCG 62.838 72.222 17.16 0.00 0.00 5.03
3419 3643 4.838486 CGACGTCAGGAGGAGCGC 62.838 72.222 17.16 0.00 0.00 5.92
3420 3644 4.838486 GACGTCAGGAGGAGCGCG 62.838 72.222 11.55 0.00 0.00 6.86
3422 3646 4.544689 CGTCAGGAGGAGCGCGAG 62.545 72.222 12.10 0.00 0.00 5.03
3423 3647 4.200283 GTCAGGAGGAGCGCGAGG 62.200 72.222 12.10 0.00 0.00 4.63
3428 3652 4.083862 GAGGAGCGCGAGGGGTTT 62.084 66.667 12.10 0.00 0.00 3.27
3429 3653 4.394712 AGGAGCGCGAGGGGTTTG 62.395 66.667 12.10 0.00 0.00 2.93
3436 3660 3.315949 CGAGGGGTTTGGGTCCGA 61.316 66.667 0.00 0.00 0.00 4.55
3437 3661 2.669240 GAGGGGTTTGGGTCCGAG 59.331 66.667 0.00 0.00 0.00 4.63
3438 3662 1.916777 GAGGGGTTTGGGTCCGAGA 60.917 63.158 0.00 0.00 0.00 4.04
3439 3663 1.900545 GAGGGGTTTGGGTCCGAGAG 61.901 65.000 0.00 0.00 0.00 3.20
3440 3664 2.046217 GGGTTTGGGTCCGAGAGC 60.046 66.667 0.00 0.00 0.00 4.09
3441 3665 2.747686 GGTTTGGGTCCGAGAGCA 59.252 61.111 5.64 0.00 0.00 4.26
3442 3666 1.671379 GGTTTGGGTCCGAGAGCAC 60.671 63.158 5.64 0.00 0.00 4.40
3443 3667 2.027625 GTTTGGGTCCGAGAGCACG 61.028 63.158 5.64 0.00 0.00 5.34
3565 3864 1.598130 GCAGATGCCCCATACGTCC 60.598 63.158 0.00 0.00 34.31 4.79
3620 3919 1.493134 AACGGACAAAAGCGGACGTC 61.493 55.000 7.13 7.13 32.98 4.34
3637 3936 4.752879 CCGGATGGGTCACGCGTT 62.753 66.667 10.22 0.00 0.00 4.84
3638 3937 3.487202 CGGATGGGTCACGCGTTG 61.487 66.667 10.22 5.57 0.00 4.10
3639 3938 3.124921 GGATGGGTCACGCGTTGG 61.125 66.667 10.22 0.00 0.00 3.77
3640 3939 2.047655 GATGGGTCACGCGTTGGA 60.048 61.111 10.22 0.77 0.00 3.53
3641 3940 2.047274 ATGGGTCACGCGTTGGAG 60.047 61.111 10.22 0.00 0.00 3.86
3642 3941 2.781595 GATGGGTCACGCGTTGGAGT 62.782 60.000 10.22 0.00 0.00 3.85
3643 3942 2.280592 GGGTCACGCGTTGGAGTT 60.281 61.111 10.22 0.00 0.00 3.01
3644 3943 2.604174 GGGTCACGCGTTGGAGTTG 61.604 63.158 10.22 0.00 0.00 3.16
3645 3944 2.604174 GGTCACGCGTTGGAGTTGG 61.604 63.158 10.22 0.00 0.00 3.77
3646 3945 2.970324 TCACGCGTTGGAGTTGGC 60.970 61.111 10.22 0.00 0.00 4.52
3647 3946 4.025401 CACGCGTTGGAGTTGGCC 62.025 66.667 10.22 0.00 0.00 5.36
3648 3947 4.250305 ACGCGTTGGAGTTGGCCT 62.250 61.111 5.58 0.00 0.00 5.19
3649 3948 2.978010 CGCGTTGGAGTTGGCCTT 60.978 61.111 3.32 0.00 0.00 4.35
3650 3949 1.669760 CGCGTTGGAGTTGGCCTTA 60.670 57.895 3.32 0.00 0.00 2.69
3651 3950 1.635663 CGCGTTGGAGTTGGCCTTAG 61.636 60.000 3.32 0.00 0.00 2.18
3652 3951 1.305930 GCGTTGGAGTTGGCCTTAGG 61.306 60.000 3.32 0.00 0.00 2.69
3672 3971 0.796312 ATGTACTTTCGCTTGTGCCG 59.204 50.000 0.00 0.00 35.36 5.69
3674 3973 0.163146 GTACTTTCGCTTGTGCCGTC 59.837 55.000 0.00 0.00 35.36 4.79
3775 4074 4.377897 ACGGTTGAGCTAGGTATTATTGC 58.622 43.478 0.00 0.00 0.00 3.56
3797 4096 2.752903 GGCGAGTTGATAAAACATGGGT 59.247 45.455 0.00 0.00 0.00 4.51
3834 4133 4.096532 TCAGCAATTACTGGACTAGAGTCG 59.903 45.833 5.84 0.00 45.65 4.18
3955 4258 6.885952 TTTCAAATTCCCTTAACGTGATCA 57.114 33.333 0.00 0.00 0.00 2.92
3956 4259 7.461182 TTTCAAATTCCCTTAACGTGATCAT 57.539 32.000 0.00 0.00 0.00 2.45
3959 4262 8.746052 TCAAATTCCCTTAACGTGATCATTAT 57.254 30.769 0.00 0.00 0.00 1.28
3981 4284 9.822185 ATTATTTCTTGATGCCTTTGGATTTAC 57.178 29.630 0.00 0.00 0.00 2.01
3989 4292 6.374333 TGATGCCTTTGGATTTACTCAGTAAC 59.626 38.462 0.00 0.00 0.00 2.50
3996 4299 8.842358 TTTGGATTTACTCAGTAACCAACTAG 57.158 34.615 15.91 0.00 35.42 2.57
4005 4308 8.494016 ACTCAGTAACCAACTAGCATTTTATC 57.506 34.615 0.00 0.00 35.76 1.75
4303 4965 2.235155 TCGCTATTCAGGTTGGCTACAA 59.765 45.455 0.80 0.00 0.00 2.41
4480 5142 1.002069 AATGACCCCTTGGCTCATCA 58.998 50.000 0.00 0.00 33.80 3.07
4519 5183 9.139734 AGTACATGATTTTCAAGCCATATCAAT 57.860 29.630 0.00 0.00 0.00 2.57
4560 5232 5.131142 TCAGAGAGAAAAGTTCAGGACCTTT 59.869 40.000 0.00 0.00 0.00 3.11
4614 5286 1.607225 TGATAATGACCCCTGGGCTT 58.393 50.000 7.39 0.00 39.32 4.35
4615 5287 2.782922 TGATAATGACCCCTGGGCTTA 58.217 47.619 7.39 2.68 39.32 3.09
4616 5288 3.335748 TGATAATGACCCCTGGGCTTAT 58.664 45.455 7.39 7.41 39.32 1.73
4617 5289 3.330701 TGATAATGACCCCTGGGCTTATC 59.669 47.826 7.39 15.36 39.32 1.75
4618 5290 0.474184 AATGACCCCTGGGCTTATCG 59.526 55.000 7.39 0.00 39.32 2.92
4619 5291 1.418908 ATGACCCCTGGGCTTATCGG 61.419 60.000 7.39 0.00 39.32 4.18
4620 5292 2.042261 ACCCCTGGGCTTATCGGT 59.958 61.111 7.39 0.00 39.32 4.69
4621 5293 0.761702 GACCCCTGGGCTTATCGGTA 60.762 60.000 7.39 0.00 39.32 4.02
4622 5294 1.052694 ACCCCTGGGCTTATCGGTAC 61.053 60.000 7.39 0.00 39.32 3.34
4623 5295 1.052124 CCCCTGGGCTTATCGGTACA 61.052 60.000 7.39 0.00 0.00 2.90
4624 5296 0.393077 CCCTGGGCTTATCGGTACAG 59.607 60.000 0.00 0.00 0.00 2.74
4625 5297 0.393077 CCTGGGCTTATCGGTACAGG 59.607 60.000 0.00 0.00 39.45 4.00
4626 5298 1.120530 CTGGGCTTATCGGTACAGGT 58.879 55.000 0.00 0.00 0.00 4.00
4627 5299 1.485066 CTGGGCTTATCGGTACAGGTT 59.515 52.381 0.00 0.00 0.00 3.50
4628 5300 2.696707 CTGGGCTTATCGGTACAGGTTA 59.303 50.000 0.00 0.00 0.00 2.85
4629 5301 2.696707 TGGGCTTATCGGTACAGGTTAG 59.303 50.000 0.00 0.00 0.00 2.34
4630 5302 2.547430 GGGCTTATCGGTACAGGTTAGC 60.547 54.545 8.51 8.51 0.00 3.09
4631 5303 2.101917 GGCTTATCGGTACAGGTTAGCA 59.898 50.000 17.00 0.00 0.00 3.49
4632 5304 3.381949 GCTTATCGGTACAGGTTAGCAG 58.618 50.000 11.61 0.00 0.00 4.24
4633 5305 3.181478 GCTTATCGGTACAGGTTAGCAGT 60.181 47.826 11.61 0.00 0.00 4.40
4634 5306 2.961526 ATCGGTACAGGTTAGCAGTG 57.038 50.000 0.00 0.00 0.00 3.66
4635 5307 1.913778 TCGGTACAGGTTAGCAGTGA 58.086 50.000 0.00 0.00 0.00 3.41
4636 5308 2.241160 TCGGTACAGGTTAGCAGTGAA 58.759 47.619 0.00 0.00 0.00 3.18
4637 5309 2.829720 TCGGTACAGGTTAGCAGTGAAT 59.170 45.455 0.00 0.00 0.00 2.57
4638 5310 3.259876 TCGGTACAGGTTAGCAGTGAATT 59.740 43.478 0.00 0.00 0.00 2.17
4639 5311 4.000988 CGGTACAGGTTAGCAGTGAATTT 58.999 43.478 0.00 0.00 0.00 1.82
4640 5312 4.092968 CGGTACAGGTTAGCAGTGAATTTC 59.907 45.833 0.00 0.00 0.00 2.17
4641 5313 5.001232 GGTACAGGTTAGCAGTGAATTTCA 58.999 41.667 0.00 0.00 0.00 2.69
4642 5314 5.648092 GGTACAGGTTAGCAGTGAATTTCAT 59.352 40.000 1.78 0.00 0.00 2.57
4643 5315 6.151144 GGTACAGGTTAGCAGTGAATTTCATT 59.849 38.462 1.78 0.00 0.00 2.57
4644 5316 6.259550 ACAGGTTAGCAGTGAATTTCATTC 57.740 37.500 1.78 0.00 39.70 2.67
4645 5317 6.006449 ACAGGTTAGCAGTGAATTTCATTCT 58.994 36.000 1.78 3.37 39.96 2.40
4646 5318 6.491403 ACAGGTTAGCAGTGAATTTCATTCTT 59.509 34.615 1.78 0.00 39.96 2.52
4647 5319 7.665559 ACAGGTTAGCAGTGAATTTCATTCTTA 59.334 33.333 1.78 0.00 39.96 2.10
4648 5320 8.514594 CAGGTTAGCAGTGAATTTCATTCTTAA 58.485 33.333 1.78 0.00 39.96 1.85
4649 5321 8.734386 AGGTTAGCAGTGAATTTCATTCTTAAG 58.266 33.333 1.78 0.00 39.96 1.85
4650 5322 8.515414 GGTTAGCAGTGAATTTCATTCTTAAGT 58.485 33.333 1.78 0.00 39.96 2.24
4651 5323 9.334693 GTTAGCAGTGAATTTCATTCTTAAGTG 57.665 33.333 1.78 0.00 39.96 3.16
4652 5324 7.516198 AGCAGTGAATTTCATTCTTAAGTGT 57.484 32.000 1.78 0.00 39.96 3.55
4653 5325 7.945134 AGCAGTGAATTTCATTCTTAAGTGTT 58.055 30.769 1.78 0.00 39.96 3.32
4654 5326 7.864379 AGCAGTGAATTTCATTCTTAAGTGTTG 59.136 33.333 1.78 0.00 39.96 3.33
4655 5327 7.862372 GCAGTGAATTTCATTCTTAAGTGTTGA 59.138 33.333 1.78 1.96 39.96 3.18
4656 5328 9.903682 CAGTGAATTTCATTCTTAAGTGTTGAT 57.096 29.630 1.78 0.00 39.96 2.57
4665 5337 9.403583 TCATTCTTAAGTGTTGATAATAACCCC 57.596 33.333 1.63 0.00 0.00 4.95
4666 5338 9.408648 CATTCTTAAGTGTTGATAATAACCCCT 57.591 33.333 1.63 0.00 0.00 4.79
4667 5339 8.801882 TTCTTAAGTGTTGATAATAACCCCTG 57.198 34.615 1.63 0.00 0.00 4.45
4668 5340 7.343357 TCTTAAGTGTTGATAATAACCCCTGG 58.657 38.462 1.63 0.00 0.00 4.45
4669 5341 4.519906 AGTGTTGATAATAACCCCTGGG 57.480 45.455 5.50 5.50 42.03 4.45
4670 5342 2.956333 GTGTTGATAATAACCCCTGGGC 59.044 50.000 7.39 0.00 39.32 5.36
4671 5343 2.856231 TGTTGATAATAACCCCTGGGCT 59.144 45.455 7.39 0.00 39.32 5.19
4696 5368 3.441572 TCGGTACAGGTTAGCAGTACTTC 59.558 47.826 14.74 0.00 38.47 3.01
4764 5436 2.240667 AGCACAATCCTAGAGCCACAAT 59.759 45.455 0.00 0.00 0.00 2.71
4770 5442 1.751351 TCCTAGAGCCACAATGAGTCG 59.249 52.381 0.00 0.00 0.00 4.18
4835 5510 9.387123 GATAACTTCTGCTCAGTTTGTTTTTAG 57.613 33.333 1.81 0.00 35.95 1.85
4883 5560 4.277174 AGTTGTCTGAGCCGATGATAGTAG 59.723 45.833 0.00 0.00 0.00 2.57
4924 5601 5.200368 ACGGTCAGATGCTTTGAATTTTT 57.800 34.783 0.00 0.00 0.00 1.94
4966 5643 8.149647 AGATGCTTTGAATTTTGAACACCATTA 58.850 29.630 0.00 0.00 0.00 1.90
4970 5647 8.229811 GCTTTGAATTTTGAACACCATTATTCC 58.770 33.333 0.00 0.00 30.31 3.01
4978 5655 6.907853 TGAACACCATTATTCCAACAATGA 57.092 33.333 0.00 0.00 34.69 2.57
5124 5801 3.867857 TGGAATCATCGTTTCGAATCCA 58.132 40.909 8.42 8.42 39.99 3.41
5145 5822 2.029290 AGACCTCACGCTTTGTTACGAT 60.029 45.455 0.00 0.00 0.00 3.73
5158 5835 3.687125 TGTTACGATGAGAGAGGTGAGT 58.313 45.455 0.00 0.00 0.00 3.41
5188 5865 6.024552 TGCTGTTTTCTCTTTCACAAGTTT 57.975 33.333 0.00 0.00 0.00 2.66
5236 5914 4.575885 TCTCGAAACTAATTTCTGTGGGG 58.424 43.478 0.00 0.00 41.88 4.96
5292 5970 3.325870 CAATTACGTTCTGAGTGAGCCA 58.674 45.455 0.00 0.00 0.00 4.75
5323 6001 4.522405 TGATCCGTGATGGTTGAACAAATT 59.478 37.500 0.00 0.00 39.52 1.82
5325 6003 5.621197 TCCGTGATGGTTGAACAAATTAG 57.379 39.130 0.00 0.00 39.52 1.73
5326 6004 5.309638 TCCGTGATGGTTGAACAAATTAGA 58.690 37.500 0.00 0.00 39.52 2.10
5327 6005 5.411361 TCCGTGATGGTTGAACAAATTAGAG 59.589 40.000 0.00 0.00 39.52 2.43
5355 6033 2.448477 GTCGGCATAAAACGGACGT 58.552 52.632 0.00 0.00 36.75 4.34
5364 6042 5.383958 GCATAAAACGGACGTTTGATACAA 58.616 37.500 21.57 6.06 46.22 2.41
5367 6045 7.615705 GCATAAAACGGACGTTTGATACAAAAC 60.616 37.037 21.57 4.60 46.22 2.43
5374 6052 3.863638 GTTTGATACAAAACGATGCGC 57.136 42.857 0.00 0.00 30.90 6.09
5375 6053 3.230355 GTTTGATACAAAACGATGCGCA 58.770 40.909 14.96 14.96 30.90 6.09
5385 6064 0.100682 ACGATGCGCATCTAGACGTT 59.899 50.000 38.93 18.89 35.72 3.99
5401 6080 0.859232 CGTTCACACGTTTGAGGAGG 59.141 55.000 4.36 0.00 41.84 4.30
5472 6156 1.636988 CTGTTCGGGGTCGTATTCAC 58.363 55.000 0.00 0.00 37.69 3.18
5511 6200 3.853355 AGAAGGGTCATTGGCTATCAG 57.147 47.619 0.00 0.00 0.00 2.90
5589 6278 6.369629 AGTCCTTGAGCTGTCTATATGTACT 58.630 40.000 0.00 0.00 0.00 2.73
5592 6281 5.772672 CCTTGAGCTGTCTATATGTACTCCT 59.227 44.000 0.00 0.00 0.00 3.69
5608 6297 0.693049 TCCTTTTCCTCTGTCCTGCC 59.307 55.000 0.00 0.00 0.00 4.85
5621 6310 2.578128 CTGCCGAAGAGAGCTGCT 59.422 61.111 0.00 0.00 0.00 4.24
5622 6311 1.810441 CTGCCGAAGAGAGCTGCTG 60.810 63.158 7.01 0.00 0.00 4.41
5623 6312 3.194308 GCCGAAGAGAGCTGCTGC 61.194 66.667 7.01 7.62 40.05 5.25
5630 6319 0.902048 AGAGAGCTGCTGCACCAGTA 60.902 55.000 18.42 0.00 42.74 2.74
5654 6345 0.527113 CGCTGATTTTGACCCATGCA 59.473 50.000 0.00 0.00 0.00 3.96
5655 6346 1.067706 CGCTGATTTTGACCCATGCAA 60.068 47.619 0.00 0.00 0.00 4.08
5656 6347 2.417651 CGCTGATTTTGACCCATGCAAT 60.418 45.455 0.00 0.00 0.00 3.56
5657 6348 3.181488 CGCTGATTTTGACCCATGCAATA 60.181 43.478 0.00 0.00 0.00 1.90
5658 6349 4.677514 CGCTGATTTTGACCCATGCAATAA 60.678 41.667 0.00 0.00 0.00 1.40
5659 6350 5.362263 GCTGATTTTGACCCATGCAATAAT 58.638 37.500 0.00 0.00 0.00 1.28
5660 6351 6.514947 GCTGATTTTGACCCATGCAATAATA 58.485 36.000 0.00 0.00 0.00 0.98
5661 6352 6.985645 GCTGATTTTGACCCATGCAATAATAA 59.014 34.615 0.00 0.00 0.00 1.40
5662 6353 7.042523 GCTGATTTTGACCCATGCAATAATAAC 60.043 37.037 0.00 0.00 0.00 1.89
5663 6354 8.076910 TGATTTTGACCCATGCAATAATAACT 57.923 30.769 0.00 0.00 0.00 2.24
5664 6355 7.980662 TGATTTTGACCCATGCAATAATAACTG 59.019 33.333 0.00 0.00 0.00 3.16
5665 6356 5.850557 TTGACCCATGCAATAATAACTGG 57.149 39.130 0.00 0.00 0.00 4.00
5666 6357 5.122707 TGACCCATGCAATAATAACTGGA 57.877 39.130 0.21 0.00 0.00 3.86
5667 6358 4.887071 TGACCCATGCAATAATAACTGGAC 59.113 41.667 0.21 0.00 0.00 4.02
5668 6359 4.865905 ACCCATGCAATAATAACTGGACA 58.134 39.130 0.21 0.00 0.00 4.02
5669 6360 4.889409 ACCCATGCAATAATAACTGGACAG 59.111 41.667 0.21 0.00 0.00 3.51
5670 6361 5.132502 CCCATGCAATAATAACTGGACAGA 58.867 41.667 6.29 0.00 0.00 3.41
5671 6362 5.240183 CCCATGCAATAATAACTGGACAGAG 59.760 44.000 6.29 0.00 0.00 3.35
5672 6363 5.824624 CCATGCAATAATAACTGGACAGAGT 59.175 40.000 6.29 0.00 0.00 3.24
5673 6364 6.238566 CCATGCAATAATAACTGGACAGAGTG 60.239 42.308 6.29 0.00 0.00 3.51
5674 6365 4.635765 TGCAATAATAACTGGACAGAGTGC 59.364 41.667 6.29 5.04 0.00 4.40
5675 6366 4.878397 GCAATAATAACTGGACAGAGTGCT 59.122 41.667 6.29 0.00 0.00 4.40
5676 6367 5.355350 GCAATAATAACTGGACAGAGTGCTT 59.645 40.000 6.29 0.00 0.00 3.91
5677 6368 6.676456 GCAATAATAACTGGACAGAGTGCTTG 60.676 42.308 6.29 4.22 0.00 4.01
5678 6369 4.357918 AATAACTGGACAGAGTGCTTGT 57.642 40.909 6.29 0.00 0.00 3.16
5679 6370 2.717639 AACTGGACAGAGTGCTTGTT 57.282 45.000 6.29 0.00 0.00 2.83
5680 6371 2.717639 ACTGGACAGAGTGCTTGTTT 57.282 45.000 6.29 0.00 0.00 2.83
5681 6372 2.292267 ACTGGACAGAGTGCTTGTTTG 58.708 47.619 6.29 0.00 0.00 2.93
5682 6373 1.002033 CTGGACAGAGTGCTTGTTTGC 60.002 52.381 0.00 0.00 0.00 3.68
5683 6374 1.312815 GGACAGAGTGCTTGTTTGCT 58.687 50.000 0.00 0.00 0.00 3.91
5684 6375 1.678101 GGACAGAGTGCTTGTTTGCTT 59.322 47.619 0.00 0.00 0.00 3.91
5685 6376 2.287248 GGACAGAGTGCTTGTTTGCTTC 60.287 50.000 0.00 0.00 0.00 3.86
5686 6377 2.615912 GACAGAGTGCTTGTTTGCTTCT 59.384 45.455 0.00 0.00 0.00 2.85
5687 6378 3.019564 ACAGAGTGCTTGTTTGCTTCTT 58.980 40.909 0.00 0.00 0.00 2.52
5688 6379 3.181493 ACAGAGTGCTTGTTTGCTTCTTG 60.181 43.478 0.00 0.00 0.00 3.02
5689 6380 3.065786 CAGAGTGCTTGTTTGCTTCTTGA 59.934 43.478 0.00 0.00 0.00 3.02
5690 6381 3.887716 AGAGTGCTTGTTTGCTTCTTGAT 59.112 39.130 0.00 0.00 0.00 2.57
5691 6382 4.340381 AGAGTGCTTGTTTGCTTCTTGATT 59.660 37.500 0.00 0.00 0.00 2.57
5692 6383 4.614946 AGTGCTTGTTTGCTTCTTGATTC 58.385 39.130 0.00 0.00 0.00 2.52
5693 6384 3.423206 GTGCTTGTTTGCTTCTTGATTCG 59.577 43.478 0.00 0.00 0.00 3.34
5694 6385 3.066621 TGCTTGTTTGCTTCTTGATTCGT 59.933 39.130 0.00 0.00 0.00 3.85
5695 6386 3.665871 GCTTGTTTGCTTCTTGATTCGTC 59.334 43.478 0.00 0.00 0.00 4.20
5696 6387 3.896648 TGTTTGCTTCTTGATTCGTCC 57.103 42.857 0.00 0.00 0.00 4.79
5697 6388 2.552315 TGTTTGCTTCTTGATTCGTCCC 59.448 45.455 0.00 0.00 0.00 4.46
5698 6389 2.814336 GTTTGCTTCTTGATTCGTCCCT 59.186 45.455 0.00 0.00 0.00 4.20
5699 6390 2.859165 TGCTTCTTGATTCGTCCCTT 57.141 45.000 0.00 0.00 0.00 3.95
5700 6391 3.140325 TGCTTCTTGATTCGTCCCTTT 57.860 42.857 0.00 0.00 0.00 3.11
5701 6392 4.280436 TGCTTCTTGATTCGTCCCTTTA 57.720 40.909 0.00 0.00 0.00 1.85
5702 6393 4.647611 TGCTTCTTGATTCGTCCCTTTAA 58.352 39.130 0.00 0.00 0.00 1.52
5703 6394 5.067273 TGCTTCTTGATTCGTCCCTTTAAA 58.933 37.500 0.00 0.00 0.00 1.52
5704 6395 5.048991 TGCTTCTTGATTCGTCCCTTTAAAC 60.049 40.000 0.00 0.00 0.00 2.01
5716 6407 7.669427 TCGTCCCTTTAAACTTGTTGAGTATA 58.331 34.615 0.00 0.00 37.72 1.47
5717 6408 8.316214 TCGTCCCTTTAAACTTGTTGAGTATAT 58.684 33.333 0.00 0.00 37.72 0.86
5720 6411 9.238368 TCCCTTTAAACTTGTTGAGTATATTGG 57.762 33.333 0.00 0.00 37.72 3.16
5752 6443 8.869109 AGGAAAGATGAGATAGACTAGGATTTG 58.131 37.037 0.00 0.00 0.00 2.32
5753 6444 8.646900 GGAAAGATGAGATAGACTAGGATTTGT 58.353 37.037 0.00 0.00 0.00 2.83
5756 6447 8.774546 AGATGAGATAGACTAGGATTTGTTCA 57.225 34.615 0.00 0.00 0.00 3.18
5758 6449 9.421806 GATGAGATAGACTAGGATTTGTTCATG 57.578 37.037 0.00 0.00 0.00 3.07
5759 6450 8.539117 TGAGATAGACTAGGATTTGTTCATGA 57.461 34.615 0.00 0.00 0.00 3.07
5764 6455 6.773638 AGACTAGGATTTGTTCATGACTTGT 58.226 36.000 0.00 0.00 0.00 3.16
5765 6456 6.876257 AGACTAGGATTTGTTCATGACTTGTC 59.124 38.462 11.30 11.30 32.23 3.18
5773 6464 6.603237 TTGTTCATGACTTGTCTTGTACTG 57.397 37.500 19.03 0.00 0.00 2.74
5828 6519 3.303495 CACGAGGCTCAAGTAATACAACG 59.697 47.826 15.95 0.00 0.00 4.10
5836 6527 7.491696 AGGCTCAAGTAATACAACGAACTATTC 59.508 37.037 0.00 0.00 0.00 1.75
5846 6538 4.261801 CAACGAACTATTCCACCAATCCT 58.738 43.478 0.00 0.00 0.00 3.24
5851 6543 5.395768 CGAACTATTCCACCAATCCTCTCTT 60.396 44.000 0.00 0.00 0.00 2.85
5875 6568 4.140782 TCCCTTCTACATGGTATCAGCCTA 60.141 45.833 0.00 0.00 0.00 3.93
5882 6577 7.116736 TCTACATGGTATCAGCCTAATCGATA 58.883 38.462 0.00 0.00 0.00 2.92
5896 6591 5.479375 CCTAATCGATACTAAACCCTAGCCA 59.521 44.000 0.00 0.00 0.00 4.75
5959 6656 2.203167 CATGATCGCTGCTGGGCT 60.203 61.111 2.54 0.00 0.00 5.19
5990 6687 2.494918 CTAGGGTTCGTCCGCCTG 59.505 66.667 0.00 0.00 37.00 4.85
5992 6689 2.280823 CTAGGGTTCGTCCGCCTGTC 62.281 65.000 0.00 0.00 37.00 3.51
6014 6711 0.173708 GTTGACCGACTGCCCTAGAG 59.826 60.000 0.00 0.00 0.00 2.43
6018 6715 0.039911 ACCGACTGCCCTAGAGAGTT 59.960 55.000 0.00 0.00 0.00 3.01
6044 6741 4.577988 TTTCAATCCTTGATCCGGGTTA 57.422 40.909 0.00 0.00 39.84 2.85
6046 6743 2.171870 TCAATCCTTGATCCGGGTTACC 59.828 50.000 0.00 0.00 34.08 2.85
6047 6744 5.311381 TCAATCCTTGATCCGGGTTACCG 62.311 52.174 0.00 0.00 46.86 4.02
6067 6764 1.605232 GGTCGGTTTGATCGGTGTTTT 59.395 47.619 0.00 0.00 0.00 2.43
6068 6765 2.350102 GGTCGGTTTGATCGGTGTTTTC 60.350 50.000 0.00 0.00 0.00 2.29
6171 6887 1.956170 CCTGCAACAACTCTCGCGT 60.956 57.895 5.77 0.00 0.00 6.01
6289 7011 0.538516 TGGATTTGGTTGTGTCCCGG 60.539 55.000 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
342 361 4.796231 CTCAGGTAAGCCGCGCGT 62.796 66.667 29.95 13.36 40.50 6.01
345 364 2.202932 ATGCTCAGGTAAGCCGCG 60.203 61.111 0.00 0.00 41.77 6.46
346 365 1.153369 TCATGCTCAGGTAAGCCGC 60.153 57.895 0.00 0.00 41.77 6.53
350 369 3.438087 CCAACAAGTCATGCTCAGGTAAG 59.562 47.826 0.00 0.00 0.00 2.34
351 370 3.411446 CCAACAAGTCATGCTCAGGTAA 58.589 45.455 0.00 0.00 0.00 2.85
425 451 2.032071 AACGCCTTCCGGTTCCTG 59.968 61.111 0.00 0.00 42.52 3.86
433 459 3.056313 GCAGCCATGAACGCCTTCC 62.056 63.158 0.00 0.00 0.00 3.46
482 508 2.433664 AAAACCTAGCCGCCGTCG 60.434 61.111 0.00 0.00 0.00 5.12
483 509 2.396157 CCAAAACCTAGCCGCCGTC 61.396 63.158 0.00 0.00 0.00 4.79
569 595 1.054406 TCCCGTCCCTTCCATCCATC 61.054 60.000 0.00 0.00 0.00 3.51
570 596 0.623324 TTCCCGTCCCTTCCATCCAT 60.623 55.000 0.00 0.00 0.00 3.41
571 597 1.229690 TTCCCGTCCCTTCCATCCA 60.230 57.895 0.00 0.00 0.00 3.41
572 598 1.527370 CTTCCCGTCCCTTCCATCC 59.473 63.158 0.00 0.00 0.00 3.51
653 686 3.775654 CTCGAGCCAGACCCACCC 61.776 72.222 0.00 0.00 0.00 4.61
777 810 1.037030 AAGAGGAGAGCCGAGCAGAG 61.037 60.000 0.00 0.00 39.96 3.35
778 811 0.613292 AAAGAGGAGAGCCGAGCAGA 60.613 55.000 0.00 0.00 39.96 4.26
779 812 0.248843 AAAAGAGGAGAGCCGAGCAG 59.751 55.000 0.00 0.00 39.96 4.24
780 813 0.687354 AAAAAGAGGAGAGCCGAGCA 59.313 50.000 0.00 0.00 39.96 4.26
805 838 3.202906 CGACAAGTCAGGGAGAAAAACA 58.797 45.455 0.72 0.00 0.00 2.83
841 874 2.280052 GAGGATCAGCGGCAGAGC 60.280 66.667 1.45 1.58 33.17 4.09
901 946 4.423209 GGCTCCTCCCCTGGGACT 62.423 72.222 16.20 0.00 39.76 3.85
968 1013 1.081774 GATCAGGCGATCGGACGAG 60.082 63.158 18.30 0.00 38.84 4.18
1020 1065 3.254903 AGATTTTACCGTCAACTTTGGGC 59.745 43.478 0.00 0.00 0.00 5.36
1032 1077 4.154918 AGCAAGCAAGAGAAGATTTTACCG 59.845 41.667 0.00 0.00 0.00 4.02
1037 1082 4.405548 AGGAAGCAAGCAAGAGAAGATTT 58.594 39.130 0.00 0.00 0.00 2.17
1038 1083 4.009002 GAGGAAGCAAGCAAGAGAAGATT 58.991 43.478 0.00 0.00 0.00 2.40
1049 1094 1.163554 CTGGTGAAGAGGAAGCAAGC 58.836 55.000 0.00 0.00 0.00 4.01
1058 1123 3.006752 AGAAGAGAAGCACTGGTGAAGAG 59.993 47.826 4.79 0.00 0.00 2.85
1065 1130 2.551459 CCAACAAGAAGAGAAGCACTGG 59.449 50.000 0.00 0.00 0.00 4.00
1066 1131 2.031333 GCCAACAAGAAGAGAAGCACTG 60.031 50.000 0.00 0.00 0.00 3.66
1067 1132 2.158696 AGCCAACAAGAAGAGAAGCACT 60.159 45.455 0.00 0.00 0.00 4.40
1086 1151 4.577834 TTTAACTAACCAGGCAACAAGC 57.422 40.909 0.00 0.00 44.65 4.01
1118 1183 4.289410 TCCCATACTCCCATGATACAATGG 59.711 45.833 0.00 1.91 45.82 3.16
1119 1184 5.013495 AGTCCCATACTCCCATGATACAATG 59.987 44.000 0.00 0.00 30.33 2.82
1122 1187 3.903714 CAGTCCCATACTCCCATGATACA 59.096 47.826 0.00 0.00 35.76 2.29
1123 1188 3.307059 GCAGTCCCATACTCCCATGATAC 60.307 52.174 0.00 0.00 35.76 2.24
1124 1189 2.906389 GCAGTCCCATACTCCCATGATA 59.094 50.000 0.00 0.00 35.76 2.15
1126 1191 1.131638 GCAGTCCCATACTCCCATGA 58.868 55.000 0.00 0.00 35.76 3.07
1128 1193 1.701847 GATGCAGTCCCATACTCCCAT 59.298 52.381 0.00 0.00 35.76 4.00
1129 1194 1.131638 GATGCAGTCCCATACTCCCA 58.868 55.000 0.00 0.00 35.76 4.37
1130 1195 0.398318 GGATGCAGTCCCATACTCCC 59.602 60.000 0.00 0.00 41.50 4.30
1131 1196 0.034059 CGGATGCAGTCCCATACTCC 59.966 60.000 8.90 0.00 44.77 3.85
1132 1197 0.034059 CCGGATGCAGTCCCATACTC 59.966 60.000 0.00 0.00 44.77 2.59
1133 1198 0.398522 TCCGGATGCAGTCCCATACT 60.399 55.000 0.00 0.00 44.77 2.12
1141 1225 1.115467 CTTACTCCTCCGGATGCAGT 58.885 55.000 3.57 9.97 0.00 4.40
1149 1233 5.340439 AATGAGTTAACCTTACTCCTCCG 57.660 43.478 0.88 0.00 41.02 4.63
1150 1234 5.672503 GGAATGAGTTAACCTTACTCCTCC 58.327 45.833 0.88 0.00 41.02 4.30
1169 1253 4.127171 CCGAGGAAACATATCAACGGAAT 58.873 43.478 0.00 0.00 39.86 3.01
1173 1257 2.550978 AGCCGAGGAAACATATCAACG 58.449 47.619 0.00 0.00 0.00 4.10
1180 1265 5.557866 ACTAAGTAAAAGCCGAGGAAACAT 58.442 37.500 0.00 0.00 0.00 2.71
1202 1287 8.492748 CAATTGAAGCCATCATTATTATGCAAC 58.507 33.333 0.00 0.00 38.03 4.17
1212 1297 6.392354 CAGTACAACAATTGAAGCCATCATT 58.608 36.000 13.59 0.00 38.03 2.57
1214 1299 4.321156 GCAGTACAACAATTGAAGCCATCA 60.321 41.667 13.59 0.00 35.85 3.07
1215 1300 4.082571 AGCAGTACAACAATTGAAGCCATC 60.083 41.667 13.59 0.00 0.00 3.51
1256 1341 6.903883 TTTCGGTCAAATATCAACTAGAGC 57.096 37.500 0.00 0.00 0.00 4.09
1349 1442 3.133691 TCTTGTGCAAGAGTAAGTGCTG 58.866 45.455 10.26 0.00 42.06 4.41
1360 1453 0.535780 TCCTGCCACTCTTGTGCAAG 60.536 55.000 5.63 5.63 42.54 4.01
1383 1476 0.535797 GTAAACCTCGTCCCCAGGAG 59.464 60.000 0.00 0.00 34.75 3.69
1386 1479 1.204941 CTGAGTAAACCTCGTCCCCAG 59.795 57.143 0.00 0.00 43.64 4.45
1402 1495 4.720090 AGTAATCGTCACGTAACACTGAG 58.280 43.478 0.00 0.00 0.00 3.35
1478 1584 5.301805 CGCAAAGGGGAAGAAAATATACCAT 59.698 40.000 0.00 0.00 0.00 3.55
1487 1593 2.436417 CTGATCGCAAAGGGGAAGAAA 58.564 47.619 0.00 0.00 39.63 2.52
1490 1596 1.379642 GCCTGATCGCAAAGGGGAAG 61.380 60.000 0.00 0.00 39.63 3.46
1503 1611 3.580458 ACTGACTTGACTGTAAGCCTGAT 59.420 43.478 0.00 0.00 37.60 2.90
1576 1725 5.945784 CCATTTTTCTGTGGTCCTAGATGAA 59.054 40.000 0.00 0.00 0.00 2.57
1600 1763 8.850452 GCTTGCAAGTTATGTTGAAATTAGTAC 58.150 33.333 26.55 0.24 0.00 2.73
1603 1766 7.872163 TGCTTGCAAGTTATGTTGAAATTAG 57.128 32.000 26.55 0.00 0.00 1.73
1604 1767 8.654230 TTTGCTTGCAAGTTATGTTGAAATTA 57.346 26.923 26.55 0.00 0.00 1.40
1605 1768 7.551035 TTTGCTTGCAAGTTATGTTGAAATT 57.449 28.000 26.55 0.00 0.00 1.82
1606 1769 7.227116 ACATTTGCTTGCAAGTTATGTTGAAAT 59.773 29.630 26.55 14.12 0.00 2.17
1607 1770 6.538021 ACATTTGCTTGCAAGTTATGTTGAAA 59.462 30.769 26.55 12.76 0.00 2.69
1608 1771 6.018913 CACATTTGCTTGCAAGTTATGTTGAA 60.019 34.615 26.34 13.73 0.00 2.69
1609 1772 5.462729 CACATTTGCTTGCAAGTTATGTTGA 59.537 36.000 26.34 10.33 0.00 3.18
1610 1773 5.462729 TCACATTTGCTTGCAAGTTATGTTG 59.537 36.000 26.34 22.34 0.00 3.33
1611 1774 5.463061 GTCACATTTGCTTGCAAGTTATGTT 59.537 36.000 26.34 16.26 0.00 2.71
1612 1775 4.984161 GTCACATTTGCTTGCAAGTTATGT 59.016 37.500 26.55 25.39 0.00 2.29
1613 1776 4.088923 CGTCACATTTGCTTGCAAGTTATG 59.911 41.667 26.55 24.85 0.00 1.90
1614 1777 4.229096 CGTCACATTTGCTTGCAAGTTAT 58.771 39.130 26.55 14.67 0.00 1.89
1615 1778 3.549827 CCGTCACATTTGCTTGCAAGTTA 60.550 43.478 26.55 14.08 0.00 2.24
1616 1779 2.462889 CGTCACATTTGCTTGCAAGTT 58.537 42.857 26.55 7.79 0.00 2.66
1617 1780 1.269206 CCGTCACATTTGCTTGCAAGT 60.269 47.619 26.55 4.83 0.00 3.16
1618 1781 1.269206 ACCGTCACATTTGCTTGCAAG 60.269 47.619 22.44 22.44 0.00 4.01
1619 1782 0.743688 ACCGTCACATTTGCTTGCAA 59.256 45.000 3.70 3.70 0.00 4.08
1620 1783 0.743688 AACCGTCACATTTGCTTGCA 59.256 45.000 0.00 0.00 0.00 4.08
1621 1784 1.268999 TGAACCGTCACATTTGCTTGC 60.269 47.619 0.00 0.00 0.00 4.01
1622 1785 2.772568 TGAACCGTCACATTTGCTTG 57.227 45.000 0.00 0.00 0.00 4.01
1652 1815 6.032094 CGCTTAATCCGAACAAACTCTACTA 58.968 40.000 0.00 0.00 0.00 1.82
1654 1817 4.492085 GCGCTTAATCCGAACAAACTCTAC 60.492 45.833 0.00 0.00 0.00 2.59
1716 1879 7.710896 ACCACGAACTAGATATAAAGTACCAC 58.289 38.462 0.00 0.00 0.00 4.16
1717 1880 7.886629 ACCACGAACTAGATATAAAGTACCA 57.113 36.000 0.00 0.00 0.00 3.25
1718 1881 9.061435 AGTACCACGAACTAGATATAAAGTACC 57.939 37.037 0.00 0.00 0.00 3.34
1732 1895 8.628280 GGAACTAGATATAAAGTACCACGAACT 58.372 37.037 0.00 0.00 0.00 3.01
1733 1896 8.628280 AGGAACTAGATATAAAGTACCACGAAC 58.372 37.037 0.00 0.00 36.02 3.95
1734 1897 8.627403 CAGGAACTAGATATAAAGTACCACGAA 58.373 37.037 0.00 0.00 36.02 3.85
1735 1898 7.255381 GCAGGAACTAGATATAAAGTACCACGA 60.255 40.741 0.00 0.00 36.02 4.35
1736 1899 6.862090 GCAGGAACTAGATATAAAGTACCACG 59.138 42.308 0.00 0.00 36.02 4.94
1737 1900 7.953752 AGCAGGAACTAGATATAAAGTACCAC 58.046 38.462 0.00 0.00 36.02 4.16
1761 1924 3.802948 ATGCTCCACCTCGTAAAGTAG 57.197 47.619 0.00 0.00 0.00 2.57
1769 1932 2.099141 TTCTGAAATGCTCCACCTCG 57.901 50.000 0.00 0.00 0.00 4.63
1919 2143 2.305052 GGTGGAGTTGGCCTAAGTTACT 59.695 50.000 3.32 0.00 0.00 2.24
1930 2154 3.041940 GTCGTGCGGTGGAGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
1931 2155 3.041940 GGTCGTGCGGTGGAGTTG 61.042 66.667 0.00 0.00 0.00 3.16
2000 2224 0.978151 TGGAGTTGGCTTTACCGCTA 59.022 50.000 0.00 0.00 43.94 4.26
2002 2226 1.583495 GGTGGAGTTGGCTTTACCGC 61.583 60.000 0.00 0.00 43.94 5.68
2009 2233 4.988598 CGTGCGGTGGAGTTGGCT 62.989 66.667 0.00 0.00 0.00 4.75
2010 2234 4.980805 TCGTGCGGTGGAGTTGGC 62.981 66.667 0.00 0.00 0.00 4.52
2011 2235 3.041940 GTCGTGCGGTGGAGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
2012 2236 3.041940 GGTCGTGCGGTGGAGTTG 61.042 66.667 0.00 0.00 0.00 3.16
2013 2237 4.309950 GGGTCGTGCGGTGGAGTT 62.310 66.667 0.00 0.00 0.00 3.01
2015 2239 4.082523 ATGGGTCGTGCGGTGGAG 62.083 66.667 0.00 0.00 0.00 3.86
2016 2240 4.077184 GATGGGTCGTGCGGTGGA 62.077 66.667 0.00 0.00 0.00 4.02
2018 2242 3.680620 ATGGATGGGTCGTGCGGTG 62.681 63.158 0.00 0.00 0.00 4.94
2019 2243 3.399181 ATGGATGGGTCGTGCGGT 61.399 61.111 0.00 0.00 0.00 5.68
2020 2244 2.896854 CATGGATGGGTCGTGCGG 60.897 66.667 0.00 0.00 0.00 5.69
2021 2245 2.173669 GTCATGGATGGGTCGTGCG 61.174 63.158 0.00 0.00 0.00 5.34
2022 2246 1.819632 GGTCATGGATGGGTCGTGC 60.820 63.158 0.00 0.00 0.00 5.34
2023 2247 1.153168 GGGTCATGGATGGGTCGTG 60.153 63.158 0.00 0.00 0.00 4.35
2024 2248 0.988145 ATGGGTCATGGATGGGTCGT 60.988 55.000 0.00 0.00 0.00 4.34
2025 2249 0.250467 GATGGGTCATGGATGGGTCG 60.250 60.000 0.00 0.00 0.00 4.79
2026 2250 0.111253 GGATGGGTCATGGATGGGTC 59.889 60.000 0.00 0.00 0.00 4.46
2027 2251 1.708993 CGGATGGGTCATGGATGGGT 61.709 60.000 0.00 0.00 0.00 4.51
2028 2252 1.073722 CGGATGGGTCATGGATGGG 59.926 63.158 0.00 0.00 0.00 4.00
2029 2253 1.073722 CCGGATGGGTCATGGATGG 59.926 63.158 0.00 0.00 0.00 3.51
2030 2254 4.806936 CCGGATGGGTCATGGATG 57.193 61.111 0.00 0.00 0.00 3.51
2039 2263 1.677633 AAAAAGCGGACCGGATGGG 60.678 57.895 17.22 0.00 40.75 4.00
2040 2264 1.241315 ACAAAAAGCGGACCGGATGG 61.241 55.000 17.22 0.00 42.84 3.51
2041 2265 0.168128 GACAAAAAGCGGACCGGATG 59.832 55.000 17.22 0.00 0.00 3.51
2042 2266 0.958876 GGACAAAAAGCGGACCGGAT 60.959 55.000 17.22 0.00 0.00 4.18
2043 2267 1.598685 GGACAAAAAGCGGACCGGA 60.599 57.895 17.22 0.00 0.00 5.14
2044 2268 2.951458 GGACAAAAAGCGGACCGG 59.049 61.111 17.22 0.00 0.00 5.28
2045 2269 1.778027 AACGGACAAAAAGCGGACCG 61.778 55.000 10.29 10.29 44.77 4.79
2046 2270 0.382873 AAACGGACAAAAAGCGGACC 59.617 50.000 0.00 0.00 0.00 4.46
2047 2271 1.064357 TCAAACGGACAAAAAGCGGAC 59.936 47.619 0.00 0.00 0.00 4.79
2048 2272 1.332375 CTCAAACGGACAAAAAGCGGA 59.668 47.619 0.00 0.00 0.00 5.54
2049 2273 1.599419 CCTCAAACGGACAAAAAGCGG 60.599 52.381 0.00 0.00 0.00 5.52
2050 2274 1.064952 ACCTCAAACGGACAAAAAGCG 59.935 47.619 0.00 0.00 0.00 4.68
2051 2275 2.863401 ACCTCAAACGGACAAAAAGC 57.137 45.000 0.00 0.00 0.00 3.51
2052 2276 6.575942 CGTATTTACCTCAAACGGACAAAAAG 59.424 38.462 0.00 0.00 0.00 2.27
2053 2277 6.259608 TCGTATTTACCTCAAACGGACAAAAA 59.740 34.615 0.00 0.00 0.00 1.94
2054 2278 5.757320 TCGTATTTACCTCAAACGGACAAAA 59.243 36.000 0.00 0.00 0.00 2.44
2055 2279 5.177327 GTCGTATTTACCTCAAACGGACAAA 59.823 40.000 0.00 0.00 0.00 2.83
2056 2280 4.685628 GTCGTATTTACCTCAAACGGACAA 59.314 41.667 0.00 0.00 0.00 3.18
2057 2281 4.236935 GTCGTATTTACCTCAAACGGACA 58.763 43.478 0.00 0.00 0.00 4.02
2058 2282 3.614176 GGTCGTATTTACCTCAAACGGAC 59.386 47.826 0.00 0.00 33.97 4.79
2059 2283 3.368323 GGGTCGTATTTACCTCAAACGGA 60.368 47.826 0.00 0.00 37.18 4.69
2060 2284 2.931969 GGGTCGTATTTACCTCAAACGG 59.068 50.000 0.00 0.00 37.18 4.44
2061 2285 3.587923 TGGGTCGTATTTACCTCAAACG 58.412 45.455 0.00 0.00 37.18 3.60
2062 2286 3.373130 GCTGGGTCGTATTTACCTCAAAC 59.627 47.826 0.00 0.00 37.18 2.93
2063 2287 3.602483 GCTGGGTCGTATTTACCTCAAA 58.398 45.455 0.00 0.00 37.18 2.69
2064 2288 2.417651 CGCTGGGTCGTATTTACCTCAA 60.418 50.000 0.00 0.00 37.18 3.02
2065 2289 1.135527 CGCTGGGTCGTATTTACCTCA 59.864 52.381 0.00 0.00 37.18 3.86
2066 2290 1.537562 CCGCTGGGTCGTATTTACCTC 60.538 57.143 0.00 0.00 37.18 3.85
2067 2291 0.462789 CCGCTGGGTCGTATTTACCT 59.537 55.000 0.00 0.00 37.18 3.08
2068 2292 0.176449 ACCGCTGGGTCGTATTTACC 59.824 55.000 0.00 0.00 46.01 2.85
2069 2293 2.869233 TACCGCTGGGTCGTATTTAC 57.131 50.000 0.00 0.00 46.01 2.01
2070 2294 4.261994 GGTATTACCGCTGGGTCGTATTTA 60.262 45.833 0.00 0.00 46.01 1.40
2071 2295 2.994186 ATTACCGCTGGGTCGTATTT 57.006 45.000 0.00 0.00 46.01 1.40
2072 2296 2.036346 GGTATTACCGCTGGGTCGTATT 59.964 50.000 0.00 0.00 46.01 1.89
2073 2297 1.615392 GGTATTACCGCTGGGTCGTAT 59.385 52.381 0.00 0.00 46.01 3.06
2074 2298 1.032014 GGTATTACCGCTGGGTCGTA 58.968 55.000 0.00 0.00 46.01 3.43
2075 2299 1.679559 GGGTATTACCGCTGGGTCGT 61.680 60.000 6.77 0.00 46.01 4.34
2076 2300 1.068585 GGGTATTACCGCTGGGTCG 59.931 63.158 6.77 0.00 46.01 4.79
2077 2301 0.542805 TTGGGTATTACCGCTGGGTC 59.457 55.000 6.77 0.00 46.01 4.46
2079 2303 1.385528 GTTTGGGTATTACCGCTGGG 58.614 55.000 6.77 0.00 39.83 4.45
2080 2304 1.011333 CGTTTGGGTATTACCGCTGG 58.989 55.000 6.77 0.00 39.83 4.85
2081 2305 1.011333 CCGTTTGGGTATTACCGCTG 58.989 55.000 6.77 0.00 39.83 5.18
2082 2306 0.903942 TCCGTTTGGGTATTACCGCT 59.096 50.000 6.77 0.00 39.83 5.52
2083 2307 1.009078 GTCCGTTTGGGTATTACCGC 58.991 55.000 6.77 1.22 39.83 5.68
2084 2308 2.383368 TGTCCGTTTGGGTATTACCG 57.617 50.000 6.77 0.00 39.83 4.02
2085 2309 3.119743 GCTTTGTCCGTTTGGGTATTACC 60.120 47.826 4.11 4.11 37.60 2.85
2086 2310 3.754850 AGCTTTGTCCGTTTGGGTATTAC 59.245 43.478 0.00 0.00 37.00 1.89
2087 2311 3.754323 CAGCTTTGTCCGTTTGGGTATTA 59.246 43.478 0.00 0.00 37.00 0.98
2088 2312 2.556622 CAGCTTTGTCCGTTTGGGTATT 59.443 45.455 0.00 0.00 37.00 1.89
2089 2313 2.159382 CAGCTTTGTCCGTTTGGGTAT 58.841 47.619 0.00 0.00 37.00 2.73
2107 2331 2.989055 AAACGGACACCAGCGGACAG 62.989 60.000 1.50 0.00 0.00 3.51
2133 2357 1.077298 TCTGGATTTGGGGTTGGGGT 61.077 55.000 0.00 0.00 0.00 4.95
2134 2358 0.614697 GTCTGGATTTGGGGTTGGGG 60.615 60.000 0.00 0.00 0.00 4.96
2176 2400 0.663568 GTCCGTCTGTGTCCGTTCAG 60.664 60.000 0.00 0.00 0.00 3.02
3399 3623 4.180946 CTCCTCCTGACGTCGCCG 62.181 72.222 11.62 1.62 40.83 6.46
3400 3624 4.500116 GCTCCTCCTGACGTCGCC 62.500 72.222 11.62 0.00 0.00 5.54
3401 3625 4.838486 CGCTCCTCCTGACGTCGC 62.838 72.222 11.62 5.17 0.00 5.19
3402 3626 4.838486 GCGCTCCTCCTGACGTCG 62.838 72.222 11.62 5.76 0.00 5.12
3403 3627 4.838486 CGCGCTCCTCCTGACGTC 62.838 72.222 9.11 9.11 0.00 4.34
3405 3629 4.544689 CTCGCGCTCCTCCTGACG 62.545 72.222 5.56 0.00 0.00 4.35
3406 3630 4.200283 CCTCGCGCTCCTCCTGAC 62.200 72.222 5.56 0.00 0.00 3.51
3411 3635 4.083862 AAACCCCTCGCGCTCCTC 62.084 66.667 5.56 0.00 0.00 3.71
3412 3636 4.394712 CAAACCCCTCGCGCTCCT 62.395 66.667 5.56 0.00 0.00 3.69
3419 3643 3.310860 CTCGGACCCAAACCCCTCG 62.311 68.421 0.00 0.00 0.00 4.63
3420 3644 1.900545 CTCTCGGACCCAAACCCCTC 61.901 65.000 0.00 0.00 0.00 4.30
3421 3645 1.918800 CTCTCGGACCCAAACCCCT 60.919 63.158 0.00 0.00 0.00 4.79
3422 3646 2.669240 CTCTCGGACCCAAACCCC 59.331 66.667 0.00 0.00 0.00 4.95
3423 3647 2.046217 GCTCTCGGACCCAAACCC 60.046 66.667 0.00 0.00 0.00 4.11
3424 3648 1.671379 GTGCTCTCGGACCCAAACC 60.671 63.158 0.00 0.00 0.00 3.27
3425 3649 2.027625 CGTGCTCTCGGACCCAAAC 61.028 63.158 0.00 0.00 0.00 2.93
3426 3650 2.342279 CGTGCTCTCGGACCCAAA 59.658 61.111 0.00 0.00 0.00 3.28
3511 3735 2.359975 CCCAAACTGTCCGCCTCC 60.360 66.667 0.00 0.00 0.00 4.30
3620 3919 4.752879 AACGCGTGACCCATCCGG 62.753 66.667 14.98 0.00 37.81 5.14
3634 3933 0.323629 TCCTAAGGCCAACTCCAACG 59.676 55.000 5.01 0.00 0.00 4.10
3635 3934 2.290960 ACATCCTAAGGCCAACTCCAAC 60.291 50.000 5.01 0.00 0.00 3.77
3636 3935 1.992557 ACATCCTAAGGCCAACTCCAA 59.007 47.619 5.01 0.00 0.00 3.53
3637 3936 1.668826 ACATCCTAAGGCCAACTCCA 58.331 50.000 5.01 0.00 0.00 3.86
3638 3937 2.772515 AGTACATCCTAAGGCCAACTCC 59.227 50.000 5.01 0.00 0.00 3.85
3639 3938 4.489306 AAGTACATCCTAAGGCCAACTC 57.511 45.455 5.01 0.00 0.00 3.01
3640 3939 4.623171 CGAAAGTACATCCTAAGGCCAACT 60.623 45.833 5.01 0.00 0.00 3.16
3641 3940 3.621715 CGAAAGTACATCCTAAGGCCAAC 59.378 47.826 5.01 0.00 0.00 3.77
3642 3941 3.869065 CGAAAGTACATCCTAAGGCCAA 58.131 45.455 5.01 0.00 0.00 4.52
3643 3942 2.419574 GCGAAAGTACATCCTAAGGCCA 60.420 50.000 5.01 0.00 0.00 5.36
3644 3943 2.158943 AGCGAAAGTACATCCTAAGGCC 60.159 50.000 0.00 0.00 0.00 5.19
3645 3944 3.180891 AGCGAAAGTACATCCTAAGGC 57.819 47.619 0.00 0.00 0.00 4.35
3646 3945 4.330074 CACAAGCGAAAGTACATCCTAAGG 59.670 45.833 0.00 0.00 0.00 2.69
3647 3946 4.201724 GCACAAGCGAAAGTACATCCTAAG 60.202 45.833 0.00 0.00 0.00 2.18
3648 3947 3.682858 GCACAAGCGAAAGTACATCCTAA 59.317 43.478 0.00 0.00 0.00 2.69
3649 3948 3.259064 GCACAAGCGAAAGTACATCCTA 58.741 45.455 0.00 0.00 0.00 2.94
3650 3949 2.076863 GCACAAGCGAAAGTACATCCT 58.923 47.619 0.00 0.00 0.00 3.24
3651 3950 1.130561 GGCACAAGCGAAAGTACATCC 59.869 52.381 0.00 0.00 43.41 3.51
3652 3951 1.201921 CGGCACAAGCGAAAGTACATC 60.202 52.381 0.00 0.00 43.41 3.06
3733 4032 5.535406 ACCGTACCCATAAATCAACAAACAA 59.465 36.000 0.00 0.00 0.00 2.83
3751 4050 5.404667 GCAATAATACCTAGCTCAACCGTAC 59.595 44.000 0.00 0.00 0.00 3.67
3775 4074 2.223249 CCCATGTTTTATCAACTCGCCG 60.223 50.000 0.00 0.00 0.00 6.46
3797 4096 2.857186 TGCTGACAAAGAGCCATACA 57.143 45.000 0.00 0.00 35.43 2.29
3834 4133 8.986477 ATATAATTTTTCCAACACAGAAGCAC 57.014 30.769 0.00 0.00 0.00 4.40
3954 4257 8.726870 AAATCCAAAGGCATCAAGAAATAATG 57.273 30.769 0.00 0.00 0.00 1.90
3955 4258 9.822185 GTAAATCCAAAGGCATCAAGAAATAAT 57.178 29.630 0.00 0.00 0.00 1.28
3956 4259 9.034800 AGTAAATCCAAAGGCATCAAGAAATAA 57.965 29.630 0.00 0.00 0.00 1.40
3959 4262 6.493115 TGAGTAAATCCAAAGGCATCAAGAAA 59.507 34.615 0.00 0.00 0.00 2.52
3981 4284 8.723942 AGATAAAATGCTAGTTGGTTACTGAG 57.276 34.615 0.00 0.00 37.73 3.35
4153 4456 7.978099 AACTTCCAGCCAAGGATATTTAAAT 57.022 32.000 5.89 5.89 37.56 1.40
4158 4461 7.004691 GGTATTAACTTCCAGCCAAGGATATT 58.995 38.462 0.00 0.00 37.56 1.28
4160 4463 5.163131 GGGTATTAACTTCCAGCCAAGGATA 60.163 44.000 0.00 0.00 37.56 2.59
4163 4466 3.053619 AGGGTATTAACTTCCAGCCAAGG 60.054 47.826 0.00 0.00 0.00 3.61
4164 4467 3.947834 CAGGGTATTAACTTCCAGCCAAG 59.052 47.826 0.00 0.00 0.00 3.61
4169 4472 8.631480 AGTTAAAACAGGGTATTAACTTCCAG 57.369 34.615 4.74 0.00 43.64 3.86
4268 4571 6.199908 CCTGAATAGCGACAGAAGTATCAAAG 59.800 42.308 0.00 0.00 36.38 2.77
4343 5005 5.689383 ATGTAAGGCGCGATAATTTGAAT 57.311 34.783 12.10 0.00 0.00 2.57
4397 5059 4.040461 CAGGTCCTGAACTTTTCTGTCCTA 59.960 45.833 14.26 0.00 33.45 2.94
4480 5142 9.804758 GAAAATCATGTACTGCTAACTAGTACT 57.195 33.333 14.21 0.00 46.66 2.73
4524 5188 6.212388 ACTTTTCTCTCTGAAGGATAGCAGAA 59.788 38.462 0.00 0.00 40.33 3.02
4530 5194 6.726299 TCCTGAACTTTTCTCTCTGAAGGATA 59.274 38.462 0.00 0.00 35.89 2.59
4531 5195 5.545723 TCCTGAACTTTTCTCTCTGAAGGAT 59.454 40.000 0.00 0.00 35.89 3.24
4532 5196 4.901849 TCCTGAACTTTTCTCTCTGAAGGA 59.098 41.667 0.00 0.00 35.89 3.36
4533 5197 4.994217 GTCCTGAACTTTTCTCTCTGAAGG 59.006 45.833 0.00 0.00 35.89 3.46
4586 5258 5.590259 CCAGGGGTCATTATCAACACTTAAG 59.410 44.000 0.00 0.00 0.00 1.85
4592 5264 1.064017 GCCCAGGGGTCATTATCAACA 60.064 52.381 7.91 0.00 37.65 3.33
4614 5286 3.623703 TCACTGCTAACCTGTACCGATA 58.376 45.455 0.00 0.00 0.00 2.92
4615 5287 2.453521 TCACTGCTAACCTGTACCGAT 58.546 47.619 0.00 0.00 0.00 4.18
4616 5288 1.913778 TCACTGCTAACCTGTACCGA 58.086 50.000 0.00 0.00 0.00 4.69
4617 5289 2.736144 TTCACTGCTAACCTGTACCG 57.264 50.000 0.00 0.00 0.00 4.02
4618 5290 5.001232 TGAAATTCACTGCTAACCTGTACC 58.999 41.667 0.00 0.00 0.00 3.34
4619 5291 6.743575 ATGAAATTCACTGCTAACCTGTAC 57.256 37.500 0.00 0.00 0.00 2.90
4639 5311 9.403583 GGGGTTATTATCAACACTTAAGAATGA 57.596 33.333 10.09 10.31 32.19 2.57
4640 5312 9.408648 AGGGGTTATTATCAACACTTAAGAATG 57.591 33.333 10.09 0.00 32.19 2.67
4641 5313 9.408648 CAGGGGTTATTATCAACACTTAAGAAT 57.591 33.333 10.09 0.00 32.19 2.40
4642 5314 7.832187 CCAGGGGTTATTATCAACACTTAAGAA 59.168 37.037 10.09 0.00 32.19 2.52
4643 5315 7.343357 CCAGGGGTTATTATCAACACTTAAGA 58.657 38.462 10.09 0.00 32.19 2.10
4644 5316 6.546034 CCCAGGGGTTATTATCAACACTTAAG 59.454 42.308 0.00 0.00 32.19 1.85
4645 5317 6.428295 CCCAGGGGTTATTATCAACACTTAA 58.572 40.000 0.00 0.00 32.19 1.85
4646 5318 5.632902 GCCCAGGGGTTATTATCAACACTTA 60.633 44.000 7.91 0.00 37.65 2.24
4647 5319 4.867086 CCCAGGGGTTATTATCAACACTT 58.133 43.478 0.00 0.00 32.19 3.16
4648 5320 3.372675 GCCCAGGGGTTATTATCAACACT 60.373 47.826 7.91 0.00 37.65 3.55
4649 5321 2.956333 GCCCAGGGGTTATTATCAACAC 59.044 50.000 7.91 0.00 37.65 3.32
4650 5322 2.856231 AGCCCAGGGGTTATTATCAACA 59.144 45.455 3.52 0.00 37.65 3.33
4651 5323 3.595190 AGCCCAGGGGTTATTATCAAC 57.405 47.619 3.52 0.00 37.65 3.18
4660 5332 0.326808 TACCGATAAGCCCAGGGGTT 60.327 55.000 26.40 26.40 45.82 4.11
4661 5333 1.052694 GTACCGATAAGCCCAGGGGT 61.053 60.000 3.52 3.52 37.65 4.95
4662 5334 1.052124 TGTACCGATAAGCCCAGGGG 61.052 60.000 7.91 3.48 38.57 4.79
4663 5335 0.393077 CTGTACCGATAAGCCCAGGG 59.607 60.000 0.00 0.00 0.00 4.45
4664 5336 0.393077 CCTGTACCGATAAGCCCAGG 59.607 60.000 0.00 0.00 34.10 4.45
4665 5337 1.120530 ACCTGTACCGATAAGCCCAG 58.879 55.000 0.00 0.00 0.00 4.45
4666 5338 1.575419 AACCTGTACCGATAAGCCCA 58.425 50.000 0.00 0.00 0.00 5.36
4667 5339 2.547430 GCTAACCTGTACCGATAAGCCC 60.547 54.545 0.00 0.00 0.00 5.19
4668 5340 2.101917 TGCTAACCTGTACCGATAAGCC 59.898 50.000 0.00 0.00 0.00 4.35
4669 5341 3.181478 ACTGCTAACCTGTACCGATAAGC 60.181 47.826 0.00 0.00 0.00 3.09
4670 5342 4.650754 ACTGCTAACCTGTACCGATAAG 57.349 45.455 0.00 0.00 0.00 1.73
4671 5343 5.195940 AGTACTGCTAACCTGTACCGATAA 58.804 41.667 0.00 0.00 45.03 1.75
4741 5413 2.040278 TGTGGCTCTAGGATTGTGCTTT 59.960 45.455 0.00 0.00 0.00 3.51
4745 5417 3.875727 CTCATTGTGGCTCTAGGATTGTG 59.124 47.826 0.00 0.00 0.00 3.33
4764 5436 4.819088 TGAACACAAATGAAATCCGACTCA 59.181 37.500 0.00 0.00 0.00 3.41
4770 5442 7.373493 AGATTGACTGAACACAAATGAAATCC 58.627 34.615 0.00 0.00 0.00 3.01
4835 5510 5.490139 TGCATGTTCTTAGCTGCTTATTC 57.510 39.130 7.79 0.00 35.66 1.75
4883 5560 8.891671 TGACCGTTATATAAACCATTAACCTC 57.108 34.615 0.00 0.00 0.00 3.85
4900 5577 5.957842 AAATTCAAAGCATCTGACCGTTA 57.042 34.783 0.00 0.00 0.00 3.18
4938 5615 5.333568 GGTGTTCAAAATTCAAAGCATCTGC 60.334 40.000 0.00 0.00 42.49 4.26
4939 5616 5.754406 TGGTGTTCAAAATTCAAAGCATCTG 59.246 36.000 0.00 0.00 0.00 2.90
4940 5617 5.916318 TGGTGTTCAAAATTCAAAGCATCT 58.084 33.333 0.00 0.00 0.00 2.90
4941 5618 6.790285 ATGGTGTTCAAAATTCAAAGCATC 57.210 33.333 0.00 0.00 0.00 3.91
4942 5619 8.851541 ATAATGGTGTTCAAAATTCAAAGCAT 57.148 26.923 0.00 0.00 0.00 3.79
4943 5620 8.674263 AATAATGGTGTTCAAAATTCAAAGCA 57.326 26.923 0.00 0.00 0.00 3.91
4944 5621 8.229811 GGAATAATGGTGTTCAAAATTCAAAGC 58.770 33.333 0.00 0.00 34.71 3.51
4945 5622 9.270640 TGGAATAATGGTGTTCAAAATTCAAAG 57.729 29.630 0.00 0.00 34.71 2.77
4946 5623 9.618890 TTGGAATAATGGTGTTCAAAATTCAAA 57.381 25.926 0.00 0.00 34.71 2.69
4947 5624 9.050601 GTTGGAATAATGGTGTTCAAAATTCAA 57.949 29.630 0.00 0.00 34.71 2.69
4948 5625 8.206867 TGTTGGAATAATGGTGTTCAAAATTCA 58.793 29.630 0.00 0.00 34.71 2.57
4949 5626 8.600449 TGTTGGAATAATGGTGTTCAAAATTC 57.400 30.769 0.00 0.00 33.43 2.17
4950 5627 8.970859 TTGTTGGAATAATGGTGTTCAAAATT 57.029 26.923 0.00 0.00 0.00 1.82
4951 5628 9.001542 CATTGTTGGAATAATGGTGTTCAAAAT 57.998 29.630 1.90 0.00 34.90 1.82
4952 5629 8.206867 TCATTGTTGGAATAATGGTGTTCAAAA 58.793 29.630 8.46 0.00 37.87 2.44
4953 5630 7.655328 GTCATTGTTGGAATAATGGTGTTCAAA 59.345 33.333 8.46 0.00 37.87 2.69
4954 5631 7.151308 GTCATTGTTGGAATAATGGTGTTCAA 58.849 34.615 8.46 0.00 37.87 2.69
4955 5632 6.569418 CGTCATTGTTGGAATAATGGTGTTCA 60.569 38.462 8.46 0.00 37.87 3.18
4966 5643 2.289444 ACCGTCTCGTCATTGTTGGAAT 60.289 45.455 0.00 0.00 0.00 3.01
4970 5647 3.288242 CAAAACCGTCTCGTCATTGTTG 58.712 45.455 0.00 0.00 0.00 3.33
4978 5655 2.228138 TACTTGCAAAACCGTCTCGT 57.772 45.000 0.00 0.00 0.00 4.18
5070 5747 1.795768 TGGTCTGCGCAAGAGTTAAG 58.204 50.000 13.05 0.00 43.02 1.85
5124 5801 1.338973 TCGTAACAAAGCGTGAGGTCT 59.661 47.619 0.00 0.00 43.76 3.85
5145 5822 3.153130 CAACTCAGACTCACCTCTCTCA 58.847 50.000 0.00 0.00 0.00 3.27
5158 5835 5.065218 GTGAAAGAGAAAACAGCAACTCAGA 59.935 40.000 0.00 0.00 32.59 3.27
5188 5865 3.664107 AGACAGCTGAACAAAATAGCGA 58.336 40.909 23.35 0.00 42.10 4.93
5236 5914 1.303309 GCACCTGCATCCATACAGTC 58.697 55.000 0.00 0.00 41.59 3.51
5292 5970 2.224769 ACCATCACGGATCAGGTTTGTT 60.225 45.455 0.00 0.00 38.63 2.83
5323 6001 1.798735 CCGACGCCGAGTTTCTCTA 59.201 57.895 0.00 0.00 38.22 2.43
5325 6003 3.179939 GCCGACGCCGAGTTTCTC 61.180 66.667 0.00 0.00 38.22 2.87
5326 6004 1.940883 TATGCCGACGCCGAGTTTCT 61.941 55.000 0.00 0.00 38.22 2.52
5327 6005 1.079875 TTATGCCGACGCCGAGTTTC 61.080 55.000 0.00 0.00 38.22 2.78
5355 6033 3.544356 TGCGCATCGTTTTGTATCAAA 57.456 38.095 5.66 0.00 0.00 2.69
5364 6042 1.200483 CGTCTAGATGCGCATCGTTT 58.800 50.000 37.09 25.78 42.48 3.60
5367 6045 0.772926 GAACGTCTAGATGCGCATCG 59.227 55.000 37.09 29.48 42.48 3.84
5368 6046 1.518929 GTGAACGTCTAGATGCGCATC 59.481 52.381 37.29 37.29 38.09 3.91
5369 6047 1.135112 TGTGAACGTCTAGATGCGCAT 60.135 47.619 25.66 25.66 0.00 4.73
5370 6048 0.242555 TGTGAACGTCTAGATGCGCA 59.757 50.000 14.96 14.96 0.00 6.09
5371 6049 0.640768 GTGTGAACGTCTAGATGCGC 59.359 55.000 12.04 0.00 0.00 6.09
5372 6050 0.907837 CGTGTGAACGTCTAGATGCG 59.092 55.000 12.04 6.54 0.00 4.73
5373 6051 1.978542 ACGTGTGAACGTCTAGATGC 58.021 50.000 12.04 0.00 43.43 3.91
5374 6052 3.978855 TCAAACGTGTGAACGTCTAGATG 59.021 43.478 5.79 10.54 46.41 2.90
5375 6053 4.227538 CTCAAACGTGTGAACGTCTAGAT 58.772 43.478 10.22 0.00 46.41 1.98
5385 6064 1.616865 CTACCCTCCTCAAACGTGTGA 59.383 52.381 8.44 8.44 0.00 3.58
5401 6080 4.982916 CACGGATCTGCTTTATGTACTACC 59.017 45.833 0.00 0.00 0.00 3.18
5472 6156 6.315642 CCCTTCTATGATTCATTCCATCGATG 59.684 42.308 18.76 18.76 0.00 3.84
5589 6278 0.693049 GGCAGGACAGAGGAAAAGGA 59.307 55.000 0.00 0.00 0.00 3.36
5592 6281 0.762418 TTCGGCAGGACAGAGGAAAA 59.238 50.000 0.00 0.00 0.00 2.29
5608 6297 2.099431 GGTGCAGCAGCTCTCTTCG 61.099 63.158 17.64 0.00 42.74 3.79
5630 6319 1.202758 TGGGTCAAAATCAGCGACACT 60.203 47.619 0.00 0.00 34.09 3.55
5654 6345 6.476378 ACAAGCACTCTGTCCAGTTATTATT 58.524 36.000 0.00 0.00 0.00 1.40
5655 6346 6.054860 ACAAGCACTCTGTCCAGTTATTAT 57.945 37.500 0.00 0.00 0.00 1.28
5656 6347 5.483685 ACAAGCACTCTGTCCAGTTATTA 57.516 39.130 0.00 0.00 0.00 0.98
5657 6348 4.357918 ACAAGCACTCTGTCCAGTTATT 57.642 40.909 0.00 0.00 0.00 1.40
5658 6349 4.357918 AACAAGCACTCTGTCCAGTTAT 57.642 40.909 0.00 0.00 0.00 1.89
5659 6350 3.838244 AACAAGCACTCTGTCCAGTTA 57.162 42.857 0.00 0.00 0.00 2.24
5660 6351 2.684881 CAAACAAGCACTCTGTCCAGTT 59.315 45.455 0.00 0.00 0.00 3.16
5661 6352 2.292267 CAAACAAGCACTCTGTCCAGT 58.708 47.619 0.00 0.00 0.00 4.00
5662 6353 1.002033 GCAAACAAGCACTCTGTCCAG 60.002 52.381 0.00 0.00 0.00 3.86
5663 6354 1.024271 GCAAACAAGCACTCTGTCCA 58.976 50.000 0.00 0.00 0.00 4.02
5664 6355 1.312815 AGCAAACAAGCACTCTGTCC 58.687 50.000 0.00 0.00 36.85 4.02
5665 6356 2.615912 AGAAGCAAACAAGCACTCTGTC 59.384 45.455 0.00 0.00 36.85 3.51
5666 6357 2.648059 AGAAGCAAACAAGCACTCTGT 58.352 42.857 0.00 0.00 36.85 3.41
5667 6358 3.065786 TCAAGAAGCAAACAAGCACTCTG 59.934 43.478 0.00 0.00 36.85 3.35
5668 6359 3.282021 TCAAGAAGCAAACAAGCACTCT 58.718 40.909 0.00 0.00 36.85 3.24
5669 6360 3.698029 TCAAGAAGCAAACAAGCACTC 57.302 42.857 0.00 0.00 36.85 3.51
5670 6361 4.614946 GAATCAAGAAGCAAACAAGCACT 58.385 39.130 0.00 0.00 36.85 4.40
5671 6362 3.423206 CGAATCAAGAAGCAAACAAGCAC 59.577 43.478 0.00 0.00 36.85 4.40
5672 6363 3.066621 ACGAATCAAGAAGCAAACAAGCA 59.933 39.130 0.00 0.00 36.85 3.91
5673 6364 3.632189 ACGAATCAAGAAGCAAACAAGC 58.368 40.909 0.00 0.00 0.00 4.01
5674 6365 4.222114 GGACGAATCAAGAAGCAAACAAG 58.778 43.478 0.00 0.00 0.00 3.16
5675 6366 3.004315 GGGACGAATCAAGAAGCAAACAA 59.996 43.478 0.00 0.00 0.00 2.83
5676 6367 2.552315 GGGACGAATCAAGAAGCAAACA 59.448 45.455 0.00 0.00 0.00 2.83
5677 6368 2.814336 AGGGACGAATCAAGAAGCAAAC 59.186 45.455 0.00 0.00 0.00 2.93
5678 6369 3.140325 AGGGACGAATCAAGAAGCAAA 57.860 42.857 0.00 0.00 0.00 3.68
5679 6370 2.859165 AGGGACGAATCAAGAAGCAA 57.141 45.000 0.00 0.00 0.00 3.91
5680 6371 2.859165 AAGGGACGAATCAAGAAGCA 57.141 45.000 0.00 0.00 0.00 3.91
5681 6372 5.181433 AGTTTAAAGGGACGAATCAAGAAGC 59.819 40.000 0.00 0.00 0.00 3.86
5682 6373 6.803154 AGTTTAAAGGGACGAATCAAGAAG 57.197 37.500 0.00 0.00 0.00 2.85
5683 6374 6.544564 ACAAGTTTAAAGGGACGAATCAAGAA 59.455 34.615 0.00 0.00 0.00 2.52
5684 6375 6.059484 ACAAGTTTAAAGGGACGAATCAAGA 58.941 36.000 0.00 0.00 0.00 3.02
5685 6376 6.313744 ACAAGTTTAAAGGGACGAATCAAG 57.686 37.500 0.00 0.00 0.00 3.02
5686 6377 6.319152 TCAACAAGTTTAAAGGGACGAATCAA 59.681 34.615 0.00 0.00 0.00 2.57
5687 6378 5.823570 TCAACAAGTTTAAAGGGACGAATCA 59.176 36.000 0.00 0.00 0.00 2.57
5688 6379 6.017357 ACTCAACAAGTTTAAAGGGACGAATC 60.017 38.462 0.00 0.00 33.03 2.52
5689 6380 5.826208 ACTCAACAAGTTTAAAGGGACGAAT 59.174 36.000 0.00 0.00 33.03 3.34
5690 6381 5.187687 ACTCAACAAGTTTAAAGGGACGAA 58.812 37.500 0.00 0.00 33.03 3.85
5691 6382 4.773013 ACTCAACAAGTTTAAAGGGACGA 58.227 39.130 0.00 0.00 33.03 4.20
5692 6383 6.796705 ATACTCAACAAGTTTAAAGGGACG 57.203 37.500 0.00 0.00 39.55 4.79
5694 6385 9.238368 CCAATATACTCAACAAGTTTAAAGGGA 57.762 33.333 0.00 0.00 39.55 4.20
5695 6386 9.020731 ACCAATATACTCAACAAGTTTAAAGGG 57.979 33.333 0.00 0.00 39.55 3.95
5733 6424 9.152327 TCATGAACAAATCCTAGTCTATCTCAT 57.848 33.333 0.00 0.00 0.00 2.90
5735 6426 8.637986 AGTCATGAACAAATCCTAGTCTATCTC 58.362 37.037 0.00 0.00 0.00 2.75
5736 6427 8.546083 AGTCATGAACAAATCCTAGTCTATCT 57.454 34.615 0.00 0.00 0.00 1.98
5742 6433 6.773638 AGACAAGTCATGAACAAATCCTAGT 58.226 36.000 0.00 0.00 0.00 2.57
5743 6434 7.173907 ACAAGACAAGTCATGAACAAATCCTAG 59.826 37.037 11.85 0.00 33.06 3.02
5745 6436 5.829924 ACAAGACAAGTCATGAACAAATCCT 59.170 36.000 11.85 0.00 33.06 3.24
5750 6441 5.007626 GCAGTACAAGACAAGTCATGAACAA 59.992 40.000 11.85 0.00 33.06 2.83
5752 6443 4.511454 TGCAGTACAAGACAAGTCATGAAC 59.489 41.667 11.85 1.11 33.06 3.18
5753 6444 4.702831 TGCAGTACAAGACAAGTCATGAA 58.297 39.130 11.85 0.00 33.06 2.57
5783 6474 8.421784 CGTGGGCATATATATAGGAGTACAATT 58.578 37.037 8.56 0.00 0.00 2.32
5786 6477 6.665695 TCGTGGGCATATATATAGGAGTACA 58.334 40.000 8.56 0.00 0.00 2.90
5804 6495 2.167693 TGTATTACTTGAGCCTCGTGGG 59.832 50.000 5.54 0.00 38.36 4.61
5819 6510 7.496591 GGATTGGTGGAATAGTTCGTTGTATTA 59.503 37.037 0.00 0.00 0.00 0.98
5828 6519 5.622346 AGAGAGGATTGGTGGAATAGTTC 57.378 43.478 0.00 0.00 0.00 3.01
5836 6527 1.918957 AGGGAAAGAGAGGATTGGTGG 59.081 52.381 0.00 0.00 0.00 4.61
5846 6538 6.202331 TGATACCATGTAGAAGGGAAAGAGA 58.798 40.000 0.00 0.00 0.00 3.10
5851 6543 3.391296 GGCTGATACCATGTAGAAGGGAA 59.609 47.826 0.00 0.00 0.00 3.97
5875 6568 4.040095 GGTGGCTAGGGTTTAGTATCGATT 59.960 45.833 1.71 0.00 0.00 3.34
5882 6577 1.600638 GCGGTGGCTAGGGTTTAGT 59.399 57.895 0.00 0.00 35.83 2.24
5959 6656 3.511595 CTAGGTACGGACGGCGCA 61.512 66.667 10.83 0.00 0.00 6.09
5966 6663 0.394352 GGACGAACCCTAGGTACGGA 60.394 60.000 18.63 0.00 33.12 4.69
5992 6689 2.149803 TAGGGCAGTCGGTCAACACG 62.150 60.000 0.00 0.00 0.00 4.49
6046 6743 0.947180 AACACCGATCAAACCGACCG 60.947 55.000 0.00 0.00 0.00 4.79
6047 6744 1.232119 AAACACCGATCAAACCGACC 58.768 50.000 0.00 0.00 0.00 4.79
6048 6745 2.546789 AGAAAACACCGATCAAACCGAC 59.453 45.455 0.00 0.00 0.00 4.79
6049 6746 2.841215 AGAAAACACCGATCAAACCGA 58.159 42.857 0.00 0.00 0.00 4.69
6050 6747 3.619233 AAGAAAACACCGATCAAACCG 57.381 42.857 0.00 0.00 0.00 4.44
6088 6795 2.687436 GACGACGCAAACCGATCG 59.313 61.111 8.51 8.51 42.17 3.69
6275 6997 4.939368 CGCCCGGGACACAACCAA 62.939 66.667 29.31 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.