Multiple sequence alignment - TraesCS1B01G363700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G363700 chr1B 100.000 2735 0 0 1 2735 592641214 592638480 0.000000e+00 5051.0
1 TraesCS1B01G363700 chr1B 80.665 331 48 7 2 317 154636434 154636105 2.720000e-60 243.0
2 TraesCS1B01G363700 chr1B 81.648 267 13 13 2483 2735 592371854 592371610 3.600000e-44 189.0
3 TraesCS1B01G363700 chr1B 84.146 164 23 2 1628 1788 592363179 592363016 3.650000e-34 156.0
4 TraesCS1B01G363700 chr1B 88.462 52 5 1 2382 2433 592212222 592212172 8.180000e-06 62.1
5 TraesCS1B01G363700 chr1A 89.916 1795 83 40 598 2338 534267533 534269283 0.000000e+00 2222.0
6 TraesCS1B01G363700 chr1A 86.656 652 31 23 2109 2735 534271223 534271843 0.000000e+00 671.0
7 TraesCS1B01G363700 chr1A 90.945 254 16 4 1846 2099 534270934 534271180 4.360000e-88 335.0
8 TraesCS1B01G363700 chr1A 80.709 254 29 8 1628 1861 534279161 534279414 2.160000e-41 180.0
9 TraesCS1B01G363700 chr1A 80.838 167 15 7 2275 2433 534099756 534099599 6.190000e-22 115.0
10 TraesCS1B01G363700 chr1D 90.101 1091 45 25 678 1739 437301757 437300701 0.000000e+00 1358.0
11 TraesCS1B01G363700 chr1D 88.004 992 80 26 845 1829 437410577 437411536 0.000000e+00 1136.0
12 TraesCS1B01G363700 chr1D 86.364 792 37 24 1846 2610 437297147 437296400 0.000000e+00 798.0
13 TraesCS1B01G363700 chr1D 92.605 311 20 2 1478 1786 437290455 437290146 6.950000e-121 444.0
14 TraesCS1B01G363700 chr1D 78.411 491 79 19 2 475 262337771 262337291 7.410000e-76 294.0
15 TraesCS1B01G363700 chr1D 82.164 342 41 14 2109 2438 437300298 437299965 2.680000e-70 276.0
16 TraesCS1B01G363700 chr1D 77.941 340 45 15 2 325 25962926 25963251 4.650000e-43 185.0
17 TraesCS1B01G363700 chr1D 90.826 109 10 0 1991 2099 437411557 437411665 2.190000e-31 147.0
18 TraesCS1B01G363700 chr1D 92.857 98 4 1 2638 2735 437296399 437296305 3.670000e-29 139.0
19 TraesCS1B01G363700 chr1D 88.235 51 6 0 2109 2159 437411708 437411758 8.180000e-06 62.1
20 TraesCS1B01G363700 chr2D 81.276 486 68 13 2 472 608654166 608653689 3.330000e-99 372.0
21 TraesCS1B01G363700 chr2D 78.702 493 82 17 2 475 473288838 473288350 9.510000e-80 307.0
22 TraesCS1B01G363700 chr2D 81.250 400 53 16 2 383 155816950 155817345 1.230000e-78 303.0
23 TraesCS1B01G363700 chr2A 79.508 488 80 12 2 472 779640314 779640798 2.030000e-86 329.0
24 TraesCS1B01G363700 chr6D 80.986 426 59 18 2 410 144602737 144603157 4.390000e-83 318.0
25 TraesCS1B01G363700 chr6D 80.392 357 55 7 2 344 452308173 452308528 9.720000e-65 257.0
26 TraesCS1B01G363700 chr3A 78.484 488 85 14 2 472 473720035 473719551 4.430000e-78 302.0
27 TraesCS1B01G363700 chr5D 79.602 402 65 9 2 388 25304971 25304572 3.470000e-69 272.0
28 TraesCS1B01G363700 chr7A 79.177 413 63 14 2 398 167745130 167744725 5.810000e-67 265.0
29 TraesCS1B01G363700 chr5B 76.846 298 56 10 2 287 572958324 572958028 3.650000e-34 156.0
30 TraesCS1B01G363700 chrUn 81.283 187 35 0 269 455 31525380 31525566 4.720000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G363700 chr1B 592638480 592641214 2734 True 5051.000000 5051 100.000000 1 2735 1 chr1B.!!$R5 2734
1 TraesCS1B01G363700 chr1A 534267533 534271843 4310 False 1076.000000 2222 89.172333 598 2735 3 chr1A.!!$F2 2137
2 TraesCS1B01G363700 chr1D 437296305 437301757 5452 True 642.750000 1358 87.871500 678 2735 4 chr1D.!!$R3 2057
3 TraesCS1B01G363700 chr1D 437410577 437411758 1181 False 448.366667 1136 89.021667 845 2159 3 chr1D.!!$F2 1314

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.034089 GGTGAGGATTGGGACCAAGG 60.034 60.0 9.9 0.0 39.47 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 2238 0.512952 CACAAGGCTGTACAGAACGC 59.487 55.0 27.08 11.66 33.22 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.382832 AGTCCGAACCTCCCTGCG 61.383 66.667 0.00 0.00 0.00 5.18
41 42 3.535962 CTGCCGCCTCCCTCTCTC 61.536 72.222 0.00 0.00 0.00 3.20
45 46 3.144193 CGCCTCCCTCTCTCGCTT 61.144 66.667 0.00 0.00 0.00 4.68
46 47 2.811799 GCCTCCCTCTCTCGCTTC 59.188 66.667 0.00 0.00 0.00 3.86
47 48 2.791868 GCCTCCCTCTCTCGCTTCC 61.792 68.421 0.00 0.00 0.00 3.46
48 49 2.485795 CCTCCCTCTCTCGCTTCCG 61.486 68.421 0.00 0.00 0.00 4.30
49 50 1.452289 CTCCCTCTCTCGCTTCCGA 60.452 63.158 0.00 0.00 42.01 4.55
50 51 1.720694 CTCCCTCTCTCGCTTCCGAC 61.721 65.000 0.00 0.00 38.82 4.79
51 52 2.405594 CCTCTCTCGCTTCCGACG 59.594 66.667 0.00 0.00 38.82 5.12
52 53 2.400158 CCTCTCTCGCTTCCGACGT 61.400 63.158 0.00 0.00 38.82 4.34
53 54 1.061253 CTCTCTCGCTTCCGACGTC 59.939 63.158 5.18 5.18 38.82 4.34
54 55 2.276743 CTCTCGCTTCCGACGTCG 60.277 66.667 30.33 30.33 38.82 5.12
55 56 4.456253 TCTCGCTTCCGACGTCGC 62.456 66.667 31.73 17.14 38.82 5.19
64 65 4.409588 CGACGTCGCCGCAACTTG 62.410 66.667 26.59 0.00 37.70 3.16
65 66 4.719616 GACGTCGCCGCAACTTGC 62.720 66.667 0.00 3.44 40.69 4.01
74 75 3.253955 GCAACTTGCGGACGACAT 58.746 55.556 0.00 0.00 31.71 3.06
75 76 1.574428 GCAACTTGCGGACGACATT 59.426 52.632 0.00 0.00 31.71 2.71
76 77 0.452784 GCAACTTGCGGACGACATTC 60.453 55.000 0.00 0.00 31.71 2.67
77 78 1.148310 CAACTTGCGGACGACATTCT 58.852 50.000 0.00 0.00 0.00 2.40
78 79 1.126846 CAACTTGCGGACGACATTCTC 59.873 52.381 0.00 0.00 0.00 2.87
79 80 0.603569 ACTTGCGGACGACATTCTCT 59.396 50.000 0.00 0.00 0.00 3.10
80 81 0.994995 CTTGCGGACGACATTCTCTG 59.005 55.000 0.00 0.00 0.00 3.35
81 82 1.014044 TTGCGGACGACATTCTCTGC 61.014 55.000 0.00 0.00 38.99 4.26
82 83 2.167861 GCGGACGACATTCTCTGCC 61.168 63.158 0.00 0.00 33.32 4.85
83 84 1.513158 CGGACGACATTCTCTGCCT 59.487 57.895 0.00 0.00 0.00 4.75
84 85 0.108615 CGGACGACATTCTCTGCCTT 60.109 55.000 0.00 0.00 0.00 4.35
85 86 1.363744 GGACGACATTCTCTGCCTTG 58.636 55.000 0.00 0.00 0.00 3.61
86 87 0.723981 GACGACATTCTCTGCCTTGC 59.276 55.000 0.00 0.00 0.00 4.01
87 88 0.035317 ACGACATTCTCTGCCTTGCA 59.965 50.000 0.00 0.00 36.92 4.08
88 89 1.159285 CGACATTCTCTGCCTTGCAA 58.841 50.000 0.00 0.00 38.41 4.08
89 90 1.129998 CGACATTCTCTGCCTTGCAAG 59.870 52.381 19.93 19.93 38.41 4.01
90 91 2.157738 GACATTCTCTGCCTTGCAAGT 58.842 47.619 24.35 2.97 38.41 3.16
91 92 2.157738 ACATTCTCTGCCTTGCAAGTC 58.842 47.619 24.35 13.47 38.41 3.01
92 93 1.129998 CATTCTCTGCCTTGCAAGTCG 59.870 52.381 24.35 11.67 38.41 4.18
93 94 1.230635 TTCTCTGCCTTGCAAGTCGC 61.231 55.000 24.35 20.75 38.41 5.19
102 103 3.561429 GCAAGTCGCAACCGATGA 58.439 55.556 0.00 0.00 46.38 2.92
103 104 1.866237 GCAAGTCGCAACCGATGAA 59.134 52.632 0.00 0.00 46.38 2.57
104 105 0.447801 GCAAGTCGCAACCGATGAAT 59.552 50.000 0.00 0.00 46.38 2.57
105 106 1.135689 GCAAGTCGCAACCGATGAATT 60.136 47.619 0.00 0.00 46.38 2.17
106 107 2.508867 CAAGTCGCAACCGATGAATTG 58.491 47.619 0.00 0.00 46.38 2.32
107 108 2.093306 AGTCGCAACCGATGAATTGA 57.907 45.000 0.00 0.00 46.38 2.57
108 109 1.732259 AGTCGCAACCGATGAATTGAC 59.268 47.619 0.00 0.00 46.38 3.18
109 110 0.718904 TCGCAACCGATGAATTGACG 59.281 50.000 0.00 0.00 38.82 4.35
110 111 0.857311 CGCAACCGATGAATTGACGC 60.857 55.000 0.00 0.00 36.29 5.19
111 112 0.523335 GCAACCGATGAATTGACGCC 60.523 55.000 0.00 0.00 0.00 5.68
112 113 0.801872 CAACCGATGAATTGACGCCA 59.198 50.000 0.00 0.00 0.00 5.69
113 114 0.802494 AACCGATGAATTGACGCCAC 59.198 50.000 0.00 0.00 0.00 5.01
114 115 1.024579 ACCGATGAATTGACGCCACC 61.025 55.000 0.00 0.00 0.00 4.61
115 116 1.348250 CGATGAATTGACGCCACCG 59.652 57.895 0.00 0.00 41.14 4.94
116 117 1.721487 GATGAATTGACGCCACCGG 59.279 57.895 0.00 0.00 39.22 5.28
117 118 0.742990 GATGAATTGACGCCACCGGA 60.743 55.000 9.46 0.00 39.22 5.14
118 119 1.024579 ATGAATTGACGCCACCGGAC 61.025 55.000 9.46 0.00 39.22 4.79
119 120 1.375523 GAATTGACGCCACCGGACT 60.376 57.895 9.46 0.00 39.22 3.85
120 121 0.108520 GAATTGACGCCACCGGACTA 60.109 55.000 9.46 0.00 39.22 2.59
121 122 0.390735 AATTGACGCCACCGGACTAC 60.391 55.000 9.46 0.00 39.22 2.73
122 123 2.552585 ATTGACGCCACCGGACTACG 62.553 60.000 9.46 9.05 43.80 3.51
126 127 4.078516 GCCACCGGACTACGCCTT 62.079 66.667 9.46 0.00 42.52 4.35
127 128 2.183555 CCACCGGACTACGCCTTC 59.816 66.667 9.46 0.00 42.52 3.46
128 129 2.202570 CACCGGACTACGCCTTCG 60.203 66.667 9.46 0.00 42.52 3.79
140 141 4.657824 CCTTCGTCGTGGCGGTGT 62.658 66.667 0.00 0.00 0.00 4.16
141 142 2.256158 CTTCGTCGTGGCGGTGTA 59.744 61.111 0.00 0.00 0.00 2.90
142 143 1.800315 CTTCGTCGTGGCGGTGTAG 60.800 63.158 0.00 0.00 0.00 2.74
143 144 3.271706 TTCGTCGTGGCGGTGTAGG 62.272 63.158 0.00 0.00 0.00 3.18
144 145 4.047059 CGTCGTGGCGGTGTAGGT 62.047 66.667 0.00 0.00 0.00 3.08
145 146 2.126189 GTCGTGGCGGTGTAGGTC 60.126 66.667 0.00 0.00 0.00 3.85
146 147 3.740397 TCGTGGCGGTGTAGGTCG 61.740 66.667 0.00 0.00 0.00 4.79
147 148 3.740397 CGTGGCGGTGTAGGTCGA 61.740 66.667 0.00 0.00 0.00 4.20
148 149 2.181021 GTGGCGGTGTAGGTCGAG 59.819 66.667 0.00 0.00 0.00 4.04
149 150 3.755628 TGGCGGTGTAGGTCGAGC 61.756 66.667 6.48 6.48 0.00 5.03
150 151 3.450115 GGCGGTGTAGGTCGAGCT 61.450 66.667 22.31 22.31 0.00 4.09
151 152 2.202623 GCGGTGTAGGTCGAGCTG 60.203 66.667 26.70 10.79 0.00 4.24
152 153 2.490217 CGGTGTAGGTCGAGCTGG 59.510 66.667 26.70 7.16 0.00 4.85
153 154 2.044555 CGGTGTAGGTCGAGCTGGA 61.045 63.158 26.70 10.20 0.00 3.86
154 155 1.511768 GGTGTAGGTCGAGCTGGAC 59.488 63.158 26.70 19.63 36.18 4.02
155 156 1.248785 GGTGTAGGTCGAGCTGGACA 61.249 60.000 27.22 20.20 38.70 4.02
156 157 0.601558 GTGTAGGTCGAGCTGGACAA 59.398 55.000 27.22 13.92 38.70 3.18
157 158 0.601558 TGTAGGTCGAGCTGGACAAC 59.398 55.000 27.22 23.12 38.70 3.32
158 159 0.601558 GTAGGTCGAGCTGGACAACA 59.398 55.000 27.22 10.94 38.70 3.33
159 160 1.204941 GTAGGTCGAGCTGGACAACAT 59.795 52.381 27.22 13.84 38.70 2.71
160 161 0.247736 AGGTCGAGCTGGACAACATC 59.752 55.000 27.22 11.73 38.70 3.06
161 162 0.247736 GGTCGAGCTGGACAACATCT 59.752 55.000 27.22 0.00 38.70 2.90
162 163 1.634702 GTCGAGCTGGACAACATCTC 58.365 55.000 22.40 0.00 38.63 2.75
163 164 0.532573 TCGAGCTGGACAACATCTCC 59.467 55.000 0.00 0.00 38.76 3.71
164 165 0.534412 CGAGCTGGACAACATCTCCT 59.466 55.000 0.00 0.00 38.76 3.69
165 166 1.738365 CGAGCTGGACAACATCTCCTG 60.738 57.143 0.00 0.00 38.76 3.86
166 167 2.475666 GCTGGACAACATCTCCTGC 58.524 57.895 1.17 1.17 43.14 4.85
167 168 1.364626 GCTGGACAACATCTCCTGCG 61.365 60.000 1.17 0.00 41.30 5.18
168 169 0.742281 CTGGACAACATCTCCTGCGG 60.742 60.000 0.00 0.00 0.00 5.69
169 170 1.296715 GGACAACATCTCCTGCGGT 59.703 57.895 0.00 0.00 0.00 5.68
170 171 1.021390 GGACAACATCTCCTGCGGTG 61.021 60.000 0.00 0.00 0.00 4.94
171 172 1.003355 ACAACATCTCCTGCGGTGG 60.003 57.895 0.00 0.00 0.00 4.61
172 173 1.296392 CAACATCTCCTGCGGTGGA 59.704 57.895 0.00 0.00 34.52 4.02
173 174 0.107508 CAACATCTCCTGCGGTGGAT 60.108 55.000 0.00 0.00 35.30 3.41
174 175 0.179000 AACATCTCCTGCGGTGGATC 59.821 55.000 0.00 0.00 35.30 3.36
175 176 1.300465 CATCTCCTGCGGTGGATCG 60.300 63.158 0.00 0.00 35.30 3.69
176 177 2.502492 ATCTCCTGCGGTGGATCGG 61.502 63.158 0.00 0.00 35.30 4.18
177 178 4.227134 CTCCTGCGGTGGATCGGG 62.227 72.222 0.00 0.00 35.30 5.14
178 179 4.770362 TCCTGCGGTGGATCGGGA 62.770 66.667 0.00 0.00 35.49 5.14
179 180 4.530857 CCTGCGGTGGATCGGGAC 62.531 72.222 0.00 0.00 0.00 4.46
180 181 3.461773 CTGCGGTGGATCGGGACT 61.462 66.667 0.00 0.00 0.00 3.85
181 182 3.723235 CTGCGGTGGATCGGGACTG 62.723 68.421 0.00 0.00 0.00 3.51
182 183 4.530857 GCGGTGGATCGGGACTGG 62.531 72.222 0.00 0.00 0.00 4.00
183 184 2.758327 CGGTGGATCGGGACTGGA 60.758 66.667 0.00 0.00 0.00 3.86
184 185 2.786495 CGGTGGATCGGGACTGGAG 61.786 68.421 0.00 0.00 0.00 3.86
185 186 2.435693 GGTGGATCGGGACTGGAGG 61.436 68.421 0.00 0.00 0.00 4.30
186 187 1.686110 GTGGATCGGGACTGGAGGT 60.686 63.158 0.00 0.00 0.00 3.85
187 188 1.685765 TGGATCGGGACTGGAGGTG 60.686 63.158 0.00 0.00 0.00 4.00
188 189 1.381327 GGATCGGGACTGGAGGTGA 60.381 63.158 0.00 0.00 0.00 4.02
189 190 1.395826 GGATCGGGACTGGAGGTGAG 61.396 65.000 0.00 0.00 0.00 3.51
190 191 1.381872 ATCGGGACTGGAGGTGAGG 60.382 63.158 0.00 0.00 0.00 3.86
191 192 1.875422 ATCGGGACTGGAGGTGAGGA 61.875 60.000 0.00 0.00 0.00 3.71
192 193 1.381872 CGGGACTGGAGGTGAGGAT 60.382 63.158 0.00 0.00 0.00 3.24
193 194 0.978146 CGGGACTGGAGGTGAGGATT 60.978 60.000 0.00 0.00 0.00 3.01
194 195 0.543749 GGGACTGGAGGTGAGGATTG 59.456 60.000 0.00 0.00 0.00 2.67
195 196 0.543749 GGACTGGAGGTGAGGATTGG 59.456 60.000 0.00 0.00 0.00 3.16
196 197 0.543749 GACTGGAGGTGAGGATTGGG 59.456 60.000 0.00 0.00 0.00 4.12
197 198 0.119155 ACTGGAGGTGAGGATTGGGA 59.881 55.000 0.00 0.00 0.00 4.37
198 199 0.543749 CTGGAGGTGAGGATTGGGAC 59.456 60.000 0.00 0.00 0.00 4.46
199 200 0.914417 TGGAGGTGAGGATTGGGACC 60.914 60.000 0.00 0.00 0.00 4.46
200 201 0.914417 GGAGGTGAGGATTGGGACCA 60.914 60.000 0.00 0.00 0.00 4.02
201 202 0.991920 GAGGTGAGGATTGGGACCAA 59.008 55.000 6.20 6.20 40.47 3.67
202 203 0.995024 AGGTGAGGATTGGGACCAAG 59.005 55.000 9.90 0.00 39.47 3.61
203 204 0.034089 GGTGAGGATTGGGACCAAGG 60.034 60.000 9.90 0.00 39.47 3.61
204 205 0.034089 GTGAGGATTGGGACCAAGGG 60.034 60.000 9.90 0.00 39.47 3.95
205 206 0.477597 TGAGGATTGGGACCAAGGGT 60.478 55.000 9.90 0.00 39.47 4.34
206 207 0.034089 GAGGATTGGGACCAAGGGTG 60.034 60.000 9.90 0.00 39.47 4.61
216 217 2.045926 CAAGGGTGGAGGAAGGCG 60.046 66.667 0.00 0.00 0.00 5.52
217 218 2.203938 AAGGGTGGAGGAAGGCGA 60.204 61.111 0.00 0.00 0.00 5.54
218 219 2.294078 AAGGGTGGAGGAAGGCGAG 61.294 63.158 0.00 0.00 0.00 5.03
219 220 3.787001 GGGTGGAGGAAGGCGAGG 61.787 72.222 0.00 0.00 0.00 4.63
220 221 3.787001 GGTGGAGGAAGGCGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
221 222 3.003763 GTGGAGGAAGGCGAGGGT 61.004 66.667 0.00 0.00 0.00 4.34
222 223 2.683933 TGGAGGAAGGCGAGGGTC 60.684 66.667 0.00 0.00 0.00 4.46
223 224 3.471806 GGAGGAAGGCGAGGGTCC 61.472 72.222 0.00 0.00 0.00 4.46
224 225 3.839432 GAGGAAGGCGAGGGTCCG 61.839 72.222 0.00 0.00 36.49 4.79
235 236 3.782443 GGGTCCGGGCACGAGAAT 61.782 66.667 11.66 0.00 44.60 2.40
236 237 2.511600 GGTCCGGGCACGAGAATG 60.512 66.667 11.66 0.00 44.60 2.67
237 238 2.511600 GTCCGGGCACGAGAATGG 60.512 66.667 11.66 0.00 44.60 3.16
238 239 3.000819 TCCGGGCACGAGAATGGT 61.001 61.111 11.66 0.00 44.60 3.55
239 240 2.046314 CCGGGCACGAGAATGGTT 60.046 61.111 11.66 0.00 44.60 3.67
240 241 2.398554 CCGGGCACGAGAATGGTTG 61.399 63.158 11.66 0.00 44.60 3.77
241 242 1.375396 CGGGCACGAGAATGGTTGA 60.375 57.895 0.00 0.00 44.60 3.18
242 243 0.953471 CGGGCACGAGAATGGTTGAA 60.953 55.000 0.00 0.00 44.60 2.69
243 244 0.804989 GGGCACGAGAATGGTTGAAG 59.195 55.000 0.00 0.00 0.00 3.02
244 245 0.804989 GGCACGAGAATGGTTGAAGG 59.195 55.000 0.00 0.00 0.00 3.46
245 246 1.610624 GGCACGAGAATGGTTGAAGGA 60.611 52.381 0.00 0.00 0.00 3.36
246 247 1.464997 GCACGAGAATGGTTGAAGGAC 59.535 52.381 0.00 0.00 0.00 3.85
247 248 1.726791 CACGAGAATGGTTGAAGGACG 59.273 52.381 0.00 0.00 0.00 4.79
248 249 1.616865 ACGAGAATGGTTGAAGGACGA 59.383 47.619 0.00 0.00 0.00 4.20
249 250 2.233922 ACGAGAATGGTTGAAGGACGAT 59.766 45.455 0.00 0.00 0.00 3.73
250 251 2.604914 CGAGAATGGTTGAAGGACGATG 59.395 50.000 0.00 0.00 0.00 3.84
251 252 2.939103 GAGAATGGTTGAAGGACGATGG 59.061 50.000 0.00 0.00 0.00 3.51
252 253 2.017049 GAATGGTTGAAGGACGATGGG 58.983 52.381 0.00 0.00 0.00 4.00
253 254 1.285280 ATGGTTGAAGGACGATGGGA 58.715 50.000 0.00 0.00 0.00 4.37
254 255 0.613260 TGGTTGAAGGACGATGGGAG 59.387 55.000 0.00 0.00 0.00 4.30
255 256 0.107654 GGTTGAAGGACGATGGGAGG 60.108 60.000 0.00 0.00 0.00 4.30
256 257 0.902531 GTTGAAGGACGATGGGAGGA 59.097 55.000 0.00 0.00 0.00 3.71
257 258 1.134670 GTTGAAGGACGATGGGAGGAG 60.135 57.143 0.00 0.00 0.00 3.69
258 259 0.687757 TGAAGGACGATGGGAGGAGG 60.688 60.000 0.00 0.00 0.00 4.30
259 260 0.397254 GAAGGACGATGGGAGGAGGA 60.397 60.000 0.00 0.00 0.00 3.71
260 261 0.042731 AAGGACGATGGGAGGAGGAA 59.957 55.000 0.00 0.00 0.00 3.36
261 262 0.397816 AGGACGATGGGAGGAGGAAG 60.398 60.000 0.00 0.00 0.00 3.46
262 263 1.403687 GGACGATGGGAGGAGGAAGG 61.404 65.000 0.00 0.00 0.00 3.46
263 264 1.383248 ACGATGGGAGGAGGAAGGG 60.383 63.158 0.00 0.00 0.00 3.95
264 265 1.383248 CGATGGGAGGAGGAAGGGT 60.383 63.158 0.00 0.00 0.00 4.34
265 266 0.983378 CGATGGGAGGAGGAAGGGTT 60.983 60.000 0.00 0.00 0.00 4.11
266 267 1.299939 GATGGGAGGAGGAAGGGTTT 58.700 55.000 0.00 0.00 0.00 3.27
267 268 1.641192 GATGGGAGGAGGAAGGGTTTT 59.359 52.381 0.00 0.00 0.00 2.43
268 269 0.777446 TGGGAGGAGGAAGGGTTTTG 59.223 55.000 0.00 0.00 0.00 2.44
269 270 1.073098 GGGAGGAGGAAGGGTTTTGA 58.927 55.000 0.00 0.00 0.00 2.69
270 271 1.641192 GGGAGGAGGAAGGGTTTTGAT 59.359 52.381 0.00 0.00 0.00 2.57
271 272 2.621668 GGGAGGAGGAAGGGTTTTGATG 60.622 54.545 0.00 0.00 0.00 3.07
272 273 2.621668 GGAGGAGGAAGGGTTTTGATGG 60.622 54.545 0.00 0.00 0.00 3.51
273 274 2.308866 GAGGAGGAAGGGTTTTGATGGA 59.691 50.000 0.00 0.00 0.00 3.41
274 275 2.929043 AGGAGGAAGGGTTTTGATGGAT 59.071 45.455 0.00 0.00 0.00 3.41
275 276 3.337909 AGGAGGAAGGGTTTTGATGGATT 59.662 43.478 0.00 0.00 0.00 3.01
276 277 4.096681 GGAGGAAGGGTTTTGATGGATTT 58.903 43.478 0.00 0.00 0.00 2.17
277 278 4.081476 GGAGGAAGGGTTTTGATGGATTTG 60.081 45.833 0.00 0.00 0.00 2.32
278 279 4.492646 AGGAAGGGTTTTGATGGATTTGT 58.507 39.130 0.00 0.00 0.00 2.83
279 280 4.907269 AGGAAGGGTTTTGATGGATTTGTT 59.093 37.500 0.00 0.00 0.00 2.83
280 281 4.996758 GGAAGGGTTTTGATGGATTTGTTG 59.003 41.667 0.00 0.00 0.00 3.33
281 282 4.006780 AGGGTTTTGATGGATTTGTTGC 57.993 40.909 0.00 0.00 0.00 4.17
282 283 3.390639 AGGGTTTTGATGGATTTGTTGCA 59.609 39.130 0.00 0.00 0.00 4.08
283 284 4.133078 GGGTTTTGATGGATTTGTTGCAA 58.867 39.130 0.00 0.00 0.00 4.08
284 285 4.761227 GGGTTTTGATGGATTTGTTGCAAT 59.239 37.500 0.59 0.00 0.00 3.56
285 286 5.241285 GGGTTTTGATGGATTTGTTGCAATT 59.759 36.000 0.59 0.00 0.00 2.32
286 287 6.238981 GGGTTTTGATGGATTTGTTGCAATTT 60.239 34.615 0.59 0.00 0.00 1.82
287 288 6.637658 GGTTTTGATGGATTTGTTGCAATTTG 59.362 34.615 0.59 0.00 0.00 2.32
288 289 5.943706 TTGATGGATTTGTTGCAATTTGG 57.056 34.783 0.59 0.00 0.00 3.28
289 290 4.325119 TGATGGATTTGTTGCAATTTGGG 58.675 39.130 0.59 0.00 0.00 4.12
290 291 3.137446 TGGATTTGTTGCAATTTGGGG 57.863 42.857 0.59 0.00 0.00 4.96
291 292 2.441001 TGGATTTGTTGCAATTTGGGGT 59.559 40.909 0.59 0.00 0.00 4.95
292 293 2.813172 GGATTTGTTGCAATTTGGGGTG 59.187 45.455 0.59 0.00 0.00 4.61
293 294 2.338577 TTTGTTGCAATTTGGGGTGG 57.661 45.000 0.59 0.00 0.00 4.61
294 295 0.471617 TTGTTGCAATTTGGGGTGGG 59.528 50.000 0.59 0.00 0.00 4.61
295 296 1.374568 GTTGCAATTTGGGGTGGGG 59.625 57.895 0.59 0.00 0.00 4.96
296 297 1.074167 TTGCAATTTGGGGTGGGGT 60.074 52.632 0.00 0.00 0.00 4.95
297 298 1.124477 TTGCAATTTGGGGTGGGGTC 61.124 55.000 0.00 0.00 0.00 4.46
298 299 2.645192 GCAATTTGGGGTGGGGTCG 61.645 63.158 0.00 0.00 0.00 4.79
299 300 1.981853 CAATTTGGGGTGGGGTCGG 60.982 63.158 0.00 0.00 0.00 4.79
300 301 3.232497 AATTTGGGGTGGGGTCGGG 62.232 63.158 0.00 0.00 0.00 5.14
305 306 4.735358 GGGTGGGGTCGGGCTTTC 62.735 72.222 0.00 0.00 0.00 2.62
306 307 3.961414 GGTGGGGTCGGGCTTTCA 61.961 66.667 0.00 0.00 0.00 2.69
307 308 2.359975 GTGGGGTCGGGCTTTCAG 60.360 66.667 0.00 0.00 0.00 3.02
308 309 2.852075 TGGGGTCGGGCTTTCAGT 60.852 61.111 0.00 0.00 0.00 3.41
309 310 2.434774 GGGGTCGGGCTTTCAGTT 59.565 61.111 0.00 0.00 0.00 3.16
310 311 1.674651 GGGGTCGGGCTTTCAGTTC 60.675 63.158 0.00 0.00 0.00 3.01
311 312 1.674651 GGGTCGGGCTTTCAGTTCC 60.675 63.158 0.00 0.00 0.00 3.62
312 313 2.033194 GGTCGGGCTTTCAGTTCCG 61.033 63.158 0.00 0.00 43.42 4.30
314 315 1.005394 TCGGGCTTTCAGTTCCGAC 60.005 57.895 0.00 0.00 45.37 4.79
315 316 2.380410 CGGGCTTTCAGTTCCGACG 61.380 63.158 0.00 0.00 44.69 5.12
316 317 1.301479 GGGCTTTCAGTTCCGACGT 60.301 57.895 0.00 0.00 0.00 4.34
317 318 1.566018 GGGCTTTCAGTTCCGACGTG 61.566 60.000 0.00 0.00 0.00 4.49
318 319 1.566018 GGCTTTCAGTTCCGACGTGG 61.566 60.000 0.00 0.00 40.09 4.94
319 320 1.860078 CTTTCAGTTCCGACGTGGC 59.140 57.895 0.00 0.00 37.80 5.01
320 321 1.886861 CTTTCAGTTCCGACGTGGCG 61.887 60.000 0.00 0.00 37.80 5.69
344 345 4.016706 CCCGGACGCCCCCATATC 62.017 72.222 0.73 0.00 0.00 1.63
345 346 4.016706 CCGGACGCCCCCATATCC 62.017 72.222 0.00 0.00 0.00 2.59
346 347 3.238497 CGGACGCCCCCATATCCA 61.238 66.667 0.00 0.00 0.00 3.41
347 348 2.430367 GGACGCCCCCATATCCAC 59.570 66.667 0.00 0.00 0.00 4.02
348 349 2.430367 GACGCCCCCATATCCACC 59.570 66.667 0.00 0.00 0.00 4.61
349 350 2.039831 ACGCCCCCATATCCACCT 60.040 61.111 0.00 0.00 0.00 4.00
350 351 2.113243 GACGCCCCCATATCCACCTC 62.113 65.000 0.00 0.00 0.00 3.85
351 352 2.146724 CGCCCCCATATCCACCTCA 61.147 63.158 0.00 0.00 0.00 3.86
352 353 1.492133 CGCCCCCATATCCACCTCAT 61.492 60.000 0.00 0.00 0.00 2.90
353 354 1.668826 GCCCCCATATCCACCTCATA 58.331 55.000 0.00 0.00 0.00 2.15
354 355 2.208872 GCCCCCATATCCACCTCATAT 58.791 52.381 0.00 0.00 0.00 1.78
355 356 2.582636 GCCCCCATATCCACCTCATATT 59.417 50.000 0.00 0.00 0.00 1.28
356 357 3.011708 GCCCCCATATCCACCTCATATTT 59.988 47.826 0.00 0.00 0.00 1.40
357 358 4.603131 CCCCCATATCCACCTCATATTTG 58.397 47.826 0.00 0.00 0.00 2.32
358 359 4.570505 CCCCCATATCCACCTCATATTTGG 60.571 50.000 0.00 0.00 0.00 3.28
359 360 4.292041 CCCCATATCCACCTCATATTTGGA 59.708 45.833 0.00 0.00 43.60 3.53
360 361 5.256474 CCCATATCCACCTCATATTTGGAC 58.744 45.833 0.00 0.00 42.26 4.02
361 362 5.014544 CCCATATCCACCTCATATTTGGACT 59.985 44.000 0.00 0.00 42.26 3.85
362 363 6.467775 CCCATATCCACCTCATATTTGGACTT 60.468 42.308 0.00 0.00 42.26 3.01
363 364 6.432162 CCATATCCACCTCATATTTGGACTTG 59.568 42.308 0.00 0.00 42.26 3.16
364 365 5.715439 ATCCACCTCATATTTGGACTTGA 57.285 39.130 0.00 0.00 42.26 3.02
365 366 5.715439 TCCACCTCATATTTGGACTTGAT 57.285 39.130 0.00 0.00 34.35 2.57
366 367 6.823286 TCCACCTCATATTTGGACTTGATA 57.177 37.500 0.00 0.00 34.35 2.15
367 368 7.392766 TCCACCTCATATTTGGACTTGATAT 57.607 36.000 0.00 0.00 34.35 1.63
368 369 8.504811 TCCACCTCATATTTGGACTTGATATA 57.495 34.615 0.00 0.00 34.35 0.86
369 370 8.597167 TCCACCTCATATTTGGACTTGATATAG 58.403 37.037 0.00 0.00 34.35 1.31
370 371 8.597167 CCACCTCATATTTGGACTTGATATAGA 58.403 37.037 0.00 0.00 31.39 1.98
371 372 9.650539 CACCTCATATTTGGACTTGATATAGAG 57.349 37.037 0.00 0.00 0.00 2.43
372 373 8.820831 ACCTCATATTTGGACTTGATATAGAGG 58.179 37.037 0.00 0.00 37.25 3.69
373 374 8.263640 CCTCATATTTGGACTTGATATAGAGGG 58.736 40.741 0.00 0.00 33.39 4.30
374 375 8.742125 TCATATTTGGACTTGATATAGAGGGT 57.258 34.615 0.00 0.00 0.00 4.34
375 376 8.597167 TCATATTTGGACTTGATATAGAGGGTG 58.403 37.037 0.00 0.00 0.00 4.61
376 377 4.689612 TTGGACTTGATATAGAGGGTGC 57.310 45.455 0.00 0.00 0.00 5.01
377 378 2.972713 TGGACTTGATATAGAGGGTGCC 59.027 50.000 0.00 0.00 0.00 5.01
378 379 2.028930 GGACTTGATATAGAGGGTGCCG 60.029 54.545 0.00 0.00 0.00 5.69
379 380 1.971357 ACTTGATATAGAGGGTGCCGG 59.029 52.381 0.00 0.00 0.00 6.13
380 381 1.971357 CTTGATATAGAGGGTGCCGGT 59.029 52.381 1.90 0.00 0.00 5.28
381 382 1.629043 TGATATAGAGGGTGCCGGTC 58.371 55.000 1.90 0.00 0.00 4.79
382 383 1.133294 TGATATAGAGGGTGCCGGTCA 60.133 52.381 1.90 0.00 0.00 4.02
383 384 1.546476 GATATAGAGGGTGCCGGTCAG 59.454 57.143 1.90 0.00 0.00 3.51
384 385 1.113517 TATAGAGGGTGCCGGTCAGC 61.114 60.000 16.53 16.53 42.24 4.26
395 396 4.655527 GGTCAGCCCGATCGTATG 57.344 61.111 15.09 9.53 0.00 2.39
396 397 2.038690 GGTCAGCCCGATCGTATGA 58.961 57.895 15.09 11.74 0.00 2.15
397 398 0.039074 GGTCAGCCCGATCGTATGAG 60.039 60.000 15.09 0.00 0.00 2.90
398 399 0.039074 GTCAGCCCGATCGTATGAGG 60.039 60.000 15.09 8.68 0.00 3.86
399 400 1.373497 CAGCCCGATCGTATGAGGC 60.373 63.158 20.55 20.55 44.20 4.70
400 401 2.048127 GCCCGATCGTATGAGGCC 60.048 66.667 18.25 0.00 37.66 5.19
401 402 2.574955 GCCCGATCGTATGAGGCCT 61.575 63.158 18.25 3.86 37.66 5.19
402 403 2.050269 CCCGATCGTATGAGGCCTT 58.950 57.895 15.09 0.00 0.00 4.35
403 404 0.393077 CCCGATCGTATGAGGCCTTT 59.607 55.000 15.09 0.00 0.00 3.11
404 405 1.202651 CCCGATCGTATGAGGCCTTTT 60.203 52.381 15.09 0.00 0.00 2.27
405 406 2.561569 CCGATCGTATGAGGCCTTTTT 58.438 47.619 15.09 0.00 0.00 1.94
406 407 3.493699 CCCGATCGTATGAGGCCTTTTTA 60.494 47.826 15.09 0.00 0.00 1.52
407 408 4.124238 CCGATCGTATGAGGCCTTTTTAA 58.876 43.478 15.09 0.00 0.00 1.52
408 409 4.211374 CCGATCGTATGAGGCCTTTTTAAG 59.789 45.833 15.09 1.89 0.00 1.85
422 423 5.682234 CTTTTTAAGGAGCCCATTTGGAT 57.318 39.130 0.00 0.00 37.39 3.41
423 424 6.790232 CTTTTTAAGGAGCCCATTTGGATA 57.210 37.500 0.00 0.00 37.39 2.59
424 425 7.181569 CTTTTTAAGGAGCCCATTTGGATAA 57.818 36.000 0.00 0.00 37.39 1.75
425 426 7.560796 TTTTTAAGGAGCCCATTTGGATAAA 57.439 32.000 0.00 0.00 37.39 1.40
426 427 7.560796 TTTTAAGGAGCCCATTTGGATAAAA 57.439 32.000 0.00 0.00 37.39 1.52
427 428 7.560796 TTTAAGGAGCCCATTTGGATAAAAA 57.439 32.000 0.00 0.00 37.39 1.94
449 450 6.609237 AAAATCATGATCATACAGTGACCG 57.391 37.500 9.06 0.00 40.28 4.79
450 451 3.733443 TCATGATCATACAGTGACCGG 57.267 47.619 8.15 0.00 40.28 5.28
451 452 3.295973 TCATGATCATACAGTGACCGGA 58.704 45.455 9.46 0.00 40.28 5.14
452 453 3.068165 TCATGATCATACAGTGACCGGAC 59.932 47.826 9.46 1.07 40.28 4.79
453 454 1.404035 TGATCATACAGTGACCGGACG 59.596 52.381 9.46 0.00 40.28 4.79
454 455 0.744874 ATCATACAGTGACCGGACGG 59.255 55.000 9.46 9.56 40.28 4.79
455 456 1.518572 CATACAGTGACCGGACGGC 60.519 63.158 9.46 4.51 39.32 5.68
456 457 1.681327 ATACAGTGACCGGACGGCT 60.681 57.895 9.46 0.96 39.32 5.52
457 458 1.664321 ATACAGTGACCGGACGGCTC 61.664 60.000 9.46 8.32 39.32 4.70
458 459 4.778415 CAGTGACCGGACGGCTCG 62.778 72.222 9.46 0.00 39.32 5.03
486 487 3.166489 GTATGAAACGGCTGTAGAGCT 57.834 47.619 12.15 0.00 45.44 4.09
492 493 2.969157 CGGCTGTAGAGCTGTGATG 58.031 57.895 12.50 0.00 45.40 3.07
493 494 1.150567 CGGCTGTAGAGCTGTGATGC 61.151 60.000 12.50 0.00 45.40 3.91
494 495 0.107993 GGCTGTAGAGCTGTGATGCA 60.108 55.000 12.15 0.00 45.44 3.96
495 496 1.474677 GGCTGTAGAGCTGTGATGCAT 60.475 52.381 12.15 0.00 45.44 3.96
496 497 1.865970 GCTGTAGAGCTGTGATGCATC 59.134 52.381 20.14 20.14 42.52 3.91
497 498 2.740904 GCTGTAGAGCTGTGATGCATCA 60.741 50.000 25.42 25.42 42.52 3.07
498 499 3.729966 CTGTAGAGCTGTGATGCATCAT 58.270 45.455 30.89 16.18 39.30 2.45
499 500 3.463944 TGTAGAGCTGTGATGCATCATG 58.536 45.455 30.89 25.20 39.30 3.07
500 501 2.711978 AGAGCTGTGATGCATCATGT 57.288 45.000 30.89 16.18 39.30 3.21
501 502 3.000684 AGAGCTGTGATGCATCATGTT 57.999 42.857 30.89 23.03 39.30 2.71
502 503 2.683362 AGAGCTGTGATGCATCATGTTG 59.317 45.455 30.89 20.52 39.30 3.33
503 504 2.422479 GAGCTGTGATGCATCATGTTGT 59.578 45.455 30.89 15.50 39.30 3.32
504 505 2.163613 AGCTGTGATGCATCATGTTGTG 59.836 45.455 30.89 17.47 39.30 3.33
505 506 2.734175 GCTGTGATGCATCATGTTGTGG 60.734 50.000 30.89 16.21 39.30 4.17
506 507 2.750712 CTGTGATGCATCATGTTGTGGA 59.249 45.455 30.89 2.94 39.30 4.02
507 508 3.155501 TGTGATGCATCATGTTGTGGAA 58.844 40.909 30.89 2.15 39.30 3.53
508 509 3.191791 TGTGATGCATCATGTTGTGGAAG 59.808 43.478 30.89 0.00 39.30 3.46
509 510 2.164827 TGATGCATCATGTTGTGGAAGC 59.835 45.455 25.42 0.00 0.00 3.86
510 511 0.889994 TGCATCATGTTGTGGAAGCC 59.110 50.000 5.69 0.00 0.00 4.35
511 512 0.889994 GCATCATGTTGTGGAAGCCA 59.110 50.000 5.69 0.00 0.00 4.75
512 513 1.479323 GCATCATGTTGTGGAAGCCAT 59.521 47.619 5.69 0.00 35.28 4.40
513 514 2.093869 GCATCATGTTGTGGAAGCCATT 60.094 45.455 5.69 0.00 35.28 3.16
514 515 3.618019 GCATCATGTTGTGGAAGCCATTT 60.618 43.478 5.69 0.00 35.28 2.32
515 516 3.663995 TCATGTTGTGGAAGCCATTTG 57.336 42.857 0.00 0.00 35.28 2.32
516 517 3.229293 TCATGTTGTGGAAGCCATTTGA 58.771 40.909 0.00 0.00 35.28 2.69
517 518 3.833650 TCATGTTGTGGAAGCCATTTGAT 59.166 39.130 0.00 0.00 35.28 2.57
518 519 3.940209 TGTTGTGGAAGCCATTTGATC 57.060 42.857 0.00 0.00 35.28 2.92
519 520 2.562298 TGTTGTGGAAGCCATTTGATCC 59.438 45.455 0.00 0.00 35.28 3.36
520 521 1.462616 TGTGGAAGCCATTTGATCCG 58.537 50.000 0.00 0.00 35.28 4.18
521 522 0.101219 GTGGAAGCCATTTGATCCGC 59.899 55.000 0.00 0.00 35.28 5.54
522 523 0.323269 TGGAAGCCATTTGATCCGCA 60.323 50.000 0.00 0.00 34.60 5.69
523 524 1.035139 GGAAGCCATTTGATCCGCAT 58.965 50.000 0.00 0.00 0.00 4.73
524 525 1.410153 GGAAGCCATTTGATCCGCATT 59.590 47.619 0.00 0.00 0.00 3.56
525 526 2.466846 GAAGCCATTTGATCCGCATTG 58.533 47.619 0.00 0.00 0.00 2.82
526 527 0.748450 AGCCATTTGATCCGCATTGG 59.252 50.000 0.00 0.00 40.09 3.16
527 528 0.461135 GCCATTTGATCCGCATTGGT 59.539 50.000 0.00 0.00 39.52 3.67
528 529 1.134729 GCCATTTGATCCGCATTGGTT 60.135 47.619 0.00 0.00 39.52 3.67
529 530 2.813061 CCATTTGATCCGCATTGGTTC 58.187 47.619 0.00 0.00 39.52 3.62
530 531 2.453080 CATTTGATCCGCATTGGTTCG 58.547 47.619 0.00 0.00 39.02 3.95
531 532 1.529226 TTTGATCCGCATTGGTTCGT 58.471 45.000 0.00 0.00 39.02 3.85
532 533 0.801872 TTGATCCGCATTGGTTCGTG 59.198 50.000 0.00 0.00 39.02 4.35
533 534 0.036858 TGATCCGCATTGGTTCGTGA 60.037 50.000 0.00 0.00 39.02 4.35
534 535 1.299541 GATCCGCATTGGTTCGTGAT 58.700 50.000 0.00 0.00 39.52 3.06
535 536 1.003545 GATCCGCATTGGTTCGTGATG 60.004 52.381 0.00 0.00 39.52 3.07
536 537 1.226379 CCGCATTGGTTCGTGATGC 60.226 57.895 0.00 0.00 41.99 3.91
537 538 1.501292 CGCATTGGTTCGTGATGCA 59.499 52.632 8.10 0.00 44.81 3.96
538 539 0.109827 CGCATTGGTTCGTGATGCAA 60.110 50.000 8.10 0.00 44.81 4.08
539 540 1.665448 CGCATTGGTTCGTGATGCAAA 60.665 47.619 8.10 0.00 44.81 3.68
540 541 2.402305 GCATTGGTTCGTGATGCAAAA 58.598 42.857 0.00 0.00 44.18 2.44
541 542 2.995258 GCATTGGTTCGTGATGCAAAAT 59.005 40.909 0.00 0.00 44.18 1.82
542 543 3.432933 GCATTGGTTCGTGATGCAAAATT 59.567 39.130 0.00 0.00 44.18 1.82
543 544 4.667161 GCATTGGTTCGTGATGCAAAATTG 60.667 41.667 0.00 0.00 44.18 2.32
544 545 3.023946 TGGTTCGTGATGCAAAATTGG 57.976 42.857 0.00 0.00 0.00 3.16
545 546 2.288702 TGGTTCGTGATGCAAAATTGGG 60.289 45.455 0.00 0.00 0.00 4.12
546 547 1.726248 GTTCGTGATGCAAAATTGGGC 59.274 47.619 0.00 0.00 0.00 5.36
547 548 0.109365 TCGTGATGCAAAATTGGGCG 60.109 50.000 0.00 0.00 0.00 6.13
548 549 0.109365 CGTGATGCAAAATTGGGCGA 60.109 50.000 0.00 0.00 0.00 5.54
549 550 1.469595 CGTGATGCAAAATTGGGCGAT 60.470 47.619 0.00 0.00 0.00 4.58
550 551 2.195922 GTGATGCAAAATTGGGCGATC 58.804 47.619 0.00 0.00 0.00 3.69
551 552 1.823610 TGATGCAAAATTGGGCGATCA 59.176 42.857 0.00 10.09 0.00 2.92
552 553 2.159212 TGATGCAAAATTGGGCGATCAG 60.159 45.455 0.00 0.00 0.00 2.90
553 554 0.531657 TGCAAAATTGGGCGATCAGG 59.468 50.000 0.00 0.00 0.00 3.86
554 555 0.807275 GCAAAATTGGGCGATCAGGC 60.807 55.000 0.00 0.00 45.91 4.85
561 562 3.395669 GGCGATCAGGCGTTGTAC 58.604 61.111 0.00 0.00 35.04 2.90
562 563 2.171725 GGCGATCAGGCGTTGTACC 61.172 63.158 0.00 0.00 35.04 3.34
563 564 2.514013 GCGATCAGGCGTTGTACCG 61.514 63.158 0.00 0.00 0.00 4.02
564 565 1.138036 CGATCAGGCGTTGTACCGA 59.862 57.895 0.00 0.00 0.00 4.69
565 566 0.866061 CGATCAGGCGTTGTACCGAG 60.866 60.000 0.00 0.00 0.00 4.63
566 567 0.527817 GATCAGGCGTTGTACCGAGG 60.528 60.000 0.00 0.00 0.00 4.63
567 568 0.968901 ATCAGGCGTTGTACCGAGGA 60.969 55.000 0.00 0.00 0.00 3.71
568 569 1.445582 CAGGCGTTGTACCGAGGAC 60.446 63.158 0.00 0.00 0.00 3.85
569 570 2.505557 GGCGTTGTACCGAGGACG 60.506 66.667 0.00 0.00 38.45 4.79
570 571 2.562912 GCGTTGTACCGAGGACGA 59.437 61.111 5.45 0.00 42.66 4.20
571 572 1.081242 GCGTTGTACCGAGGACGAA 60.081 57.895 5.45 0.00 42.66 3.85
572 573 0.664166 GCGTTGTACCGAGGACGAAA 60.664 55.000 5.45 0.00 42.66 3.46
573 574 1.986698 CGTTGTACCGAGGACGAAAT 58.013 50.000 0.00 0.00 42.66 2.17
574 575 2.331194 CGTTGTACCGAGGACGAAATT 58.669 47.619 0.00 0.00 42.66 1.82
575 576 2.091588 CGTTGTACCGAGGACGAAATTG 59.908 50.000 0.00 0.00 42.66 2.32
576 577 3.319755 GTTGTACCGAGGACGAAATTGA 58.680 45.455 0.00 0.00 42.66 2.57
577 578 2.950433 TGTACCGAGGACGAAATTGAC 58.050 47.619 0.00 0.00 42.66 3.18
578 579 2.265683 GTACCGAGGACGAAATTGACC 58.734 52.381 0.00 0.00 42.66 4.02
579 580 0.389426 ACCGAGGACGAAATTGACCG 60.389 55.000 0.00 0.00 42.66 4.79
580 581 1.082117 CCGAGGACGAAATTGACCGG 61.082 60.000 0.00 0.00 42.66 5.28
581 582 0.389426 CGAGGACGAAATTGACCGGT 60.389 55.000 6.92 6.92 42.66 5.28
582 583 1.135315 CGAGGACGAAATTGACCGGTA 60.135 52.381 7.34 0.00 42.66 4.02
583 584 2.265683 GAGGACGAAATTGACCGGTAC 58.734 52.381 7.34 1.38 0.00 3.34
584 585 1.066645 AGGACGAAATTGACCGGTACC 60.067 52.381 7.34 0.16 0.00 3.34
585 586 0.994263 GACGAAATTGACCGGTACCG 59.006 55.000 27.68 27.68 39.44 4.02
637 638 4.712425 CGGACGACGGCGAGGTTT 62.712 66.667 22.49 0.00 41.64 3.27
638 639 2.808321 GGACGACGGCGAGGTTTC 60.808 66.667 22.49 2.79 41.64 2.78
643 648 1.737008 GACGGCGAGGTTTCTGGTC 60.737 63.158 16.62 0.00 0.00 4.02
645 650 2.434359 GGCGAGGTTTCTGGTCGG 60.434 66.667 0.00 0.00 34.23 4.79
647 652 2.434359 CGAGGTTTCTGGTCGGGC 60.434 66.667 0.00 0.00 0.00 6.13
689 694 2.267642 GTGCCTGCCCGTACATCA 59.732 61.111 0.00 0.00 0.00 3.07
690 695 1.153168 GTGCCTGCCCGTACATCAT 60.153 57.895 0.00 0.00 0.00 2.45
745 750 2.093288 TCTTCCACATCATCAGTGCCTC 60.093 50.000 0.00 0.00 35.69 4.70
769 774 1.198094 TCTTCTCCCCATCGCACCAA 61.198 55.000 0.00 0.00 0.00 3.67
772 777 3.253061 TCCCCATCGCACCAACCA 61.253 61.111 0.00 0.00 0.00 3.67
773 778 2.282816 CCCCATCGCACCAACCAA 60.283 61.111 0.00 0.00 0.00 3.67
774 779 2.635443 CCCCATCGCACCAACCAAC 61.635 63.158 0.00 0.00 0.00 3.77
775 780 2.635443 CCCATCGCACCAACCAACC 61.635 63.158 0.00 0.00 0.00 3.77
776 781 1.900981 CCATCGCACCAACCAACCA 60.901 57.895 0.00 0.00 0.00 3.67
777 782 1.459455 CCATCGCACCAACCAACCAA 61.459 55.000 0.00 0.00 0.00 3.67
778 783 0.318614 CATCGCACCAACCAACCAAC 60.319 55.000 0.00 0.00 0.00 3.77
779 784 1.791103 ATCGCACCAACCAACCAACG 61.791 55.000 0.00 0.00 0.00 4.10
793 798 4.226761 CAACCAACGAACCTGCTAAAATC 58.773 43.478 0.00 0.00 0.00 2.17
812 817 0.108898 CCAGCGACACTTCTGAGAGG 60.109 60.000 0.00 0.00 32.26 3.69
815 820 1.689273 AGCGACACTTCTGAGAGGTTT 59.311 47.619 0.00 0.00 0.00 3.27
816 821 2.062519 GCGACACTTCTGAGAGGTTTC 58.937 52.381 0.00 0.00 0.00 2.78
817 822 2.320367 CGACACTTCTGAGAGGTTTCG 58.680 52.381 16.70 16.70 36.06 3.46
818 823 2.287668 CGACACTTCTGAGAGGTTTCGT 60.288 50.000 20.55 5.64 37.18 3.85
910 935 0.796312 AGTGTTAAATCCGCACGCAG 59.204 50.000 0.00 0.00 38.10 5.18
912 937 0.953471 TGTTAAATCCGCACGCAGCT 60.953 50.000 0.00 0.00 42.61 4.24
913 938 0.168128 GTTAAATCCGCACGCAGCTT 59.832 50.000 0.00 0.00 42.61 3.74
939 964 2.126307 CGGTCAGAGCCAGACACG 60.126 66.667 0.00 0.00 37.74 4.49
955 980 3.611674 CGCCAACCCAACCAACCC 61.612 66.667 0.00 0.00 0.00 4.11
1508 1547 2.742372 GCGCGGGAAGAAGCTCAA 60.742 61.111 8.83 0.00 0.00 3.02
1659 1698 3.071602 CGATTAGGATGTCCATGTTCCCT 59.928 47.826 1.30 0.00 38.89 4.20
1739 1778 0.814812 GCTTCCAGGCTCTGATCAGC 60.815 60.000 18.36 8.16 38.84 4.26
1840 1896 3.628032 TGGAAATTGCTGTTGTCGTTACA 59.372 39.130 0.00 0.00 0.00 2.41
1841 1897 4.096532 TGGAAATTGCTGTTGTCGTTACAA 59.903 37.500 0.00 0.00 43.32 2.41
1855 1911 7.260558 TGTCGTTACAATACAATTTGGTGAA 57.739 32.000 0.78 0.00 30.91 3.18
1887 1961 1.748950 TTGGCAGATTGCGCTATTGA 58.251 45.000 9.73 0.00 46.21 2.57
1902 1976 5.505173 GCTATTGAGCTGAAGCCAAATTA 57.495 39.130 0.00 1.04 45.98 1.40
1903 1977 6.081872 GCTATTGAGCTGAAGCCAAATTAT 57.918 37.500 0.00 0.00 45.98 1.28
1905 1979 7.651808 GCTATTGAGCTGAAGCCAAATTATAA 58.348 34.615 0.00 0.00 45.98 0.98
1906 1980 7.806960 GCTATTGAGCTGAAGCCAAATTATAAG 59.193 37.037 0.00 2.39 45.98 1.73
1907 1981 7.651027 ATTGAGCTGAAGCCAAATTATAAGT 57.349 32.000 0.00 0.00 43.38 2.24
1908 1982 6.683974 TGAGCTGAAGCCAAATTATAAGTC 57.316 37.500 0.00 0.00 43.38 3.01
1912 1986 6.258068 AGCTGAAGCCAAATTATAAGTCGTAC 59.742 38.462 0.00 0.00 43.38 3.67
1951 2025 8.940952 GCTTTGGATGATAGATACCATAAGAAC 58.059 37.037 0.00 0.00 32.31 3.01
1955 2029 7.734865 TGGATGATAGATACCATAAGAACCTGT 59.265 37.037 0.00 0.00 0.00 4.00
1983 2077 4.941325 TGAGCACTACTTGTAGTACTCG 57.059 45.455 24.45 11.69 41.25 4.18
1986 2080 4.829968 AGCACTACTTGTAGTACTCGAGA 58.170 43.478 21.68 0.00 0.00 4.04
1987 2081 4.871557 AGCACTACTTGTAGTACTCGAGAG 59.128 45.833 21.68 6.46 0.00 3.20
1988 2082 4.630940 GCACTACTTGTAGTACTCGAGAGT 59.369 45.833 21.68 12.50 45.02 3.24
1989 2083 5.220453 GCACTACTTGTAGTACTCGAGAGTC 60.220 48.000 21.68 8.69 42.54 3.36
1990 2084 5.004630 CACTACTTGTAGTACTCGAGAGTCG 59.995 48.000 21.68 8.65 42.54 4.18
1992 2086 3.925913 ACTTGTAGTACTCGAGAGTCGAC 59.074 47.826 21.68 7.70 44.82 4.20
2025 2119 4.212143 TCTGATTGAGGTCATCACAAGG 57.788 45.455 0.00 0.00 37.77 3.61
2032 2126 1.589716 GGTCATCACAAGGTGCAGCC 61.590 60.000 13.29 4.65 32.98 4.85
2106 2200 5.108517 CAGTTAGAGATGAAGCCTCTTCAC 58.891 45.833 10.98 6.31 41.00 3.18
2112 2230 1.527034 TGAAGCCTCTTCACATGTGC 58.473 50.000 21.38 8.25 0.00 4.57
2113 2231 1.072806 TGAAGCCTCTTCACATGTGCT 59.927 47.619 21.38 10.60 0.00 4.40
2114 2232 2.302733 TGAAGCCTCTTCACATGTGCTA 59.697 45.455 21.38 10.32 0.00 3.49
2116 2234 3.423539 AGCCTCTTCACATGTGCTAAA 57.576 42.857 21.38 9.47 0.00 1.85
2118 2236 3.077359 GCCTCTTCACATGTGCTAAACT 58.923 45.455 21.38 0.00 0.00 2.66
2120 2238 4.331168 GCCTCTTCACATGTGCTAAACTAG 59.669 45.833 21.38 10.24 0.00 2.57
2160 2300 5.643348 TGTGAAATCTGAATACGAGTGCATT 59.357 36.000 0.00 0.00 0.00 3.56
2161 2301 5.961843 GTGAAATCTGAATACGAGTGCATTG 59.038 40.000 0.00 0.00 0.00 2.82
2162 2302 5.065090 TGAAATCTGAATACGAGTGCATTGG 59.935 40.000 0.00 0.00 0.00 3.16
2289 2429 8.831550 CCTTATTAGAACTTTTCCATGTCTAGC 58.168 37.037 0.00 0.00 0.00 3.42
2303 2443 3.801698 TGTCTAGCTGATCATTGCTTCC 58.198 45.455 14.01 4.58 40.35 3.46
2409 6040 3.071023 ACTGAGATTCGTTGGTCTTTCCA 59.929 43.478 0.00 0.00 45.60 3.53
2451 6082 3.156293 TGTTTATGCTGTGGCTTCATGT 58.844 40.909 0.00 0.00 39.59 3.21
2452 6083 4.331108 TGTTTATGCTGTGGCTTCATGTA 58.669 39.130 0.00 0.00 39.59 2.29
2454 6085 5.163632 TGTTTATGCTGTGGCTTCATGTATG 60.164 40.000 0.00 0.00 39.59 2.39
2455 6086 1.097232 TGCTGTGGCTTCATGTATGC 58.903 50.000 0.00 0.00 39.59 3.14
2587 6227 7.661847 AGCGGTTTAAATCTAATAAGATGGGAG 59.338 37.037 0.00 0.00 41.81 4.30
2590 6230 9.355916 GGTTTAAATCTAATAAGATGGGAGCTT 57.644 33.333 0.00 0.00 41.81 3.74
2633 6287 1.885887 ACAATCACAAACCATGTCGGG 59.114 47.619 0.00 0.00 41.46 5.14
2679 6333 3.206150 AGTTGCTATTGTATGCCCTTCG 58.794 45.455 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.382832 CGCAGGGAGGTTCGGACT 61.383 66.667 0.00 0.00 0.00 3.85
24 25 3.535962 GAGAGAGGGAGGCGGCAG 61.536 72.222 13.08 0.00 0.00 4.85
28 29 3.132481 GAAGCGAGAGAGGGAGGCG 62.132 68.421 0.00 0.00 0.00 5.52
29 30 2.791868 GGAAGCGAGAGAGGGAGGC 61.792 68.421 0.00 0.00 0.00 4.70
30 31 2.485795 CGGAAGCGAGAGAGGGAGG 61.486 68.421 0.00 0.00 0.00 4.30
31 32 1.452289 TCGGAAGCGAGAGAGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
32 33 1.749638 GTCGGAAGCGAGAGAGGGA 60.750 63.158 0.00 0.00 0.00 4.20
33 34 2.802106 GTCGGAAGCGAGAGAGGG 59.198 66.667 0.00 0.00 0.00 4.30
34 35 2.312398 GACGTCGGAAGCGAGAGAGG 62.312 65.000 0.00 0.00 35.27 3.69
35 36 1.061253 GACGTCGGAAGCGAGAGAG 59.939 63.158 0.00 0.00 35.27 3.20
36 37 2.737688 CGACGTCGGAAGCGAGAGA 61.738 63.158 29.70 0.00 35.27 3.10
37 38 2.276743 CGACGTCGGAAGCGAGAG 60.277 66.667 29.70 0.00 35.27 3.20
38 39 4.456253 GCGACGTCGGAAGCGAGA 62.456 66.667 36.13 0.00 40.23 4.04
57 58 0.452784 GAATGTCGTCCGCAAGTTGC 60.453 55.000 18.18 18.18 40.69 4.17
58 59 1.126846 GAGAATGTCGTCCGCAAGTTG 59.873 52.381 0.00 0.00 0.00 3.16
59 60 1.000955 AGAGAATGTCGTCCGCAAGTT 59.999 47.619 0.00 0.00 0.00 2.66
60 61 0.603569 AGAGAATGTCGTCCGCAAGT 59.396 50.000 0.00 0.00 0.00 3.16
61 62 0.994995 CAGAGAATGTCGTCCGCAAG 59.005 55.000 0.00 0.00 0.00 4.01
62 63 1.014044 GCAGAGAATGTCGTCCGCAA 61.014 55.000 0.00 0.00 0.00 4.85
63 64 1.446099 GCAGAGAATGTCGTCCGCA 60.446 57.895 0.00 0.00 0.00 5.69
64 65 2.167861 GGCAGAGAATGTCGTCCGC 61.168 63.158 0.00 0.00 0.00 5.54
65 66 0.108615 AAGGCAGAGAATGTCGTCCG 60.109 55.000 0.00 0.00 39.07 4.79
66 67 1.363744 CAAGGCAGAGAATGTCGTCC 58.636 55.000 0.00 0.00 39.07 4.79
67 68 0.723981 GCAAGGCAGAGAATGTCGTC 59.276 55.000 0.00 0.00 39.07 4.20
68 69 0.035317 TGCAAGGCAGAGAATGTCGT 59.965 50.000 0.00 0.00 39.07 4.34
69 70 1.129998 CTTGCAAGGCAGAGAATGTCG 59.870 52.381 19.14 0.00 40.61 4.35
70 71 2.157738 ACTTGCAAGGCAGAGAATGTC 58.842 47.619 29.18 0.00 40.61 3.06
71 72 2.157738 GACTTGCAAGGCAGAGAATGT 58.842 47.619 27.73 3.71 40.61 2.71
72 73 1.129998 CGACTTGCAAGGCAGAGAATG 59.870 52.381 31.00 9.85 40.61 2.67
73 74 1.446907 CGACTTGCAAGGCAGAGAAT 58.553 50.000 31.00 7.39 40.61 2.40
74 75 1.230635 GCGACTTGCAAGGCAGAGAA 61.231 55.000 31.00 0.00 45.45 2.87
75 76 1.669115 GCGACTTGCAAGGCAGAGA 60.669 57.895 31.00 0.00 45.45 3.10
76 77 2.866028 GCGACTTGCAAGGCAGAG 59.134 61.111 31.00 16.51 45.45 3.35
85 86 0.447801 ATTCATCGGTTGCGACTTGC 59.552 50.000 3.59 0.00 46.70 4.01
86 87 2.159430 TCAATTCATCGGTTGCGACTTG 59.841 45.455 3.59 0.00 0.00 3.16
87 88 2.159627 GTCAATTCATCGGTTGCGACTT 59.840 45.455 3.59 0.00 0.00 3.01
88 89 1.732259 GTCAATTCATCGGTTGCGACT 59.268 47.619 3.59 0.00 0.00 4.18
89 90 1.526986 CGTCAATTCATCGGTTGCGAC 60.527 52.381 0.00 0.00 31.42 5.19
90 91 0.718904 CGTCAATTCATCGGTTGCGA 59.281 50.000 0.00 0.00 31.42 5.10
91 92 0.857311 GCGTCAATTCATCGGTTGCG 60.857 55.000 0.00 0.00 0.00 4.85
92 93 0.523335 GGCGTCAATTCATCGGTTGC 60.523 55.000 0.00 0.00 0.00 4.17
93 94 0.801872 TGGCGTCAATTCATCGGTTG 59.198 50.000 0.00 0.00 0.00 3.77
94 95 0.802494 GTGGCGTCAATTCATCGGTT 59.198 50.000 0.00 0.00 0.00 4.44
95 96 1.024579 GGTGGCGTCAATTCATCGGT 61.025 55.000 0.00 0.00 0.00 4.69
96 97 1.721487 GGTGGCGTCAATTCATCGG 59.279 57.895 0.00 0.00 0.00 4.18
97 98 1.348250 CGGTGGCGTCAATTCATCG 59.652 57.895 0.00 0.00 0.00 3.84
98 99 0.742990 TCCGGTGGCGTCAATTCATC 60.743 55.000 0.00 0.00 0.00 2.92
99 100 1.024579 GTCCGGTGGCGTCAATTCAT 61.025 55.000 0.00 0.00 0.00 2.57
100 101 1.669760 GTCCGGTGGCGTCAATTCA 60.670 57.895 0.00 0.00 0.00 2.57
101 102 0.108520 TAGTCCGGTGGCGTCAATTC 60.109 55.000 0.00 0.00 0.00 2.17
102 103 0.390735 GTAGTCCGGTGGCGTCAATT 60.391 55.000 0.00 0.00 0.00 2.32
103 104 1.217244 GTAGTCCGGTGGCGTCAAT 59.783 57.895 0.00 0.00 0.00 2.57
104 105 2.652530 GTAGTCCGGTGGCGTCAA 59.347 61.111 0.00 0.00 0.00 3.18
105 106 3.740397 CGTAGTCCGGTGGCGTCA 61.740 66.667 0.00 0.00 0.00 4.35
109 110 4.078516 AAGGCGTAGTCCGGTGGC 62.079 66.667 0.00 0.00 36.94 5.01
110 111 2.183555 GAAGGCGTAGTCCGGTGG 59.816 66.667 0.00 0.00 36.94 4.61
111 112 2.202570 CGAAGGCGTAGTCCGGTG 60.203 66.667 0.00 0.00 36.94 4.94
123 124 3.271706 TACACCGCCACGACGAAGG 62.272 63.158 0.00 4.11 34.06 3.46
124 125 1.800315 CTACACCGCCACGACGAAG 60.800 63.158 0.00 0.00 34.06 3.79
125 126 2.256158 CTACACCGCCACGACGAA 59.744 61.111 0.00 0.00 34.06 3.85
126 127 3.740397 CCTACACCGCCACGACGA 61.740 66.667 0.00 0.00 34.06 4.20
127 128 3.958822 GACCTACACCGCCACGACG 62.959 68.421 0.00 0.00 0.00 5.12
128 129 2.126189 GACCTACACCGCCACGAC 60.126 66.667 0.00 0.00 0.00 4.34
129 130 3.740397 CGACCTACACCGCCACGA 61.740 66.667 0.00 0.00 0.00 4.35
130 131 3.678717 CTCGACCTACACCGCCACG 62.679 68.421 0.00 0.00 0.00 4.94
131 132 2.181021 CTCGACCTACACCGCCAC 59.819 66.667 0.00 0.00 0.00 5.01
132 133 3.755628 GCTCGACCTACACCGCCA 61.756 66.667 0.00 0.00 0.00 5.69
133 134 3.450115 AGCTCGACCTACACCGCC 61.450 66.667 0.00 0.00 0.00 6.13
134 135 2.202623 CAGCTCGACCTACACCGC 60.203 66.667 0.00 0.00 0.00 5.68
135 136 2.044555 TCCAGCTCGACCTACACCG 61.045 63.158 0.00 0.00 0.00 4.94
136 137 1.248785 TGTCCAGCTCGACCTACACC 61.249 60.000 9.11 0.00 31.35 4.16
137 138 0.601558 TTGTCCAGCTCGACCTACAC 59.398 55.000 9.11 0.00 31.35 2.90
138 139 0.601558 GTTGTCCAGCTCGACCTACA 59.398 55.000 9.11 0.00 31.35 2.74
139 140 0.601558 TGTTGTCCAGCTCGACCTAC 59.398 55.000 9.11 7.77 31.35 3.18
140 141 1.476891 GATGTTGTCCAGCTCGACCTA 59.523 52.381 9.11 0.00 31.35 3.08
141 142 0.247736 GATGTTGTCCAGCTCGACCT 59.752 55.000 9.11 0.00 31.35 3.85
142 143 0.247736 AGATGTTGTCCAGCTCGACC 59.752 55.000 9.11 0.00 33.62 4.79
143 144 1.634702 GAGATGTTGTCCAGCTCGAC 58.365 55.000 4.30 4.30 45.78 4.20
147 148 0.035630 GCAGGAGATGTTGTCCAGCT 60.036 55.000 1.51 0.00 44.07 4.24
148 149 1.364626 CGCAGGAGATGTTGTCCAGC 61.365 60.000 0.00 0.00 41.87 4.85
149 150 2.759783 CGCAGGAGATGTTGTCCAG 58.240 57.895 0.00 0.00 36.43 3.86
163 164 3.461773 AGTCCCGATCCACCGCAG 61.462 66.667 0.00 0.00 0.00 5.18
164 165 3.770040 CAGTCCCGATCCACCGCA 61.770 66.667 0.00 0.00 0.00 5.69
165 166 4.530857 CCAGTCCCGATCCACCGC 62.531 72.222 0.00 0.00 0.00 5.68
166 167 2.758327 TCCAGTCCCGATCCACCG 60.758 66.667 0.00 0.00 0.00 4.94
167 168 2.435693 CCTCCAGTCCCGATCCACC 61.436 68.421 0.00 0.00 0.00 4.61
168 169 1.686110 ACCTCCAGTCCCGATCCAC 60.686 63.158 0.00 0.00 0.00 4.02
169 170 1.685765 CACCTCCAGTCCCGATCCA 60.686 63.158 0.00 0.00 0.00 3.41
170 171 1.381327 TCACCTCCAGTCCCGATCC 60.381 63.158 0.00 0.00 0.00 3.36
171 172 1.395826 CCTCACCTCCAGTCCCGATC 61.396 65.000 0.00 0.00 0.00 3.69
172 173 1.381872 CCTCACCTCCAGTCCCGAT 60.382 63.158 0.00 0.00 0.00 4.18
173 174 1.875422 ATCCTCACCTCCAGTCCCGA 61.875 60.000 0.00 0.00 0.00 5.14
174 175 0.978146 AATCCTCACCTCCAGTCCCG 60.978 60.000 0.00 0.00 0.00 5.14
175 176 0.543749 CAATCCTCACCTCCAGTCCC 59.456 60.000 0.00 0.00 0.00 4.46
176 177 0.543749 CCAATCCTCACCTCCAGTCC 59.456 60.000 0.00 0.00 0.00 3.85
177 178 0.543749 CCCAATCCTCACCTCCAGTC 59.456 60.000 0.00 0.00 0.00 3.51
178 179 0.119155 TCCCAATCCTCACCTCCAGT 59.881 55.000 0.00 0.00 0.00 4.00
179 180 0.543749 GTCCCAATCCTCACCTCCAG 59.456 60.000 0.00 0.00 0.00 3.86
180 181 0.914417 GGTCCCAATCCTCACCTCCA 60.914 60.000 0.00 0.00 0.00 3.86
181 182 0.914417 TGGTCCCAATCCTCACCTCC 60.914 60.000 0.00 0.00 0.00 4.30
182 183 0.991920 TTGGTCCCAATCCTCACCTC 59.008 55.000 0.00 0.00 0.00 3.85
183 184 0.995024 CTTGGTCCCAATCCTCACCT 59.005 55.000 0.00 0.00 35.20 4.00
184 185 0.034089 CCTTGGTCCCAATCCTCACC 60.034 60.000 0.00 0.00 35.20 4.02
185 186 0.034089 CCCTTGGTCCCAATCCTCAC 60.034 60.000 0.00 0.00 35.20 3.51
186 187 0.477597 ACCCTTGGTCCCAATCCTCA 60.478 55.000 0.00 0.00 35.20 3.86
187 188 0.034089 CACCCTTGGTCCCAATCCTC 60.034 60.000 0.00 0.00 35.20 3.71
188 189 1.509548 CCACCCTTGGTCCCAATCCT 61.510 60.000 0.00 0.00 38.23 3.24
189 190 1.000359 CCACCCTTGGTCCCAATCC 60.000 63.158 0.00 0.00 38.23 3.01
190 191 0.034089 CTCCACCCTTGGTCCCAATC 60.034 60.000 0.00 0.00 44.35 2.67
191 192 1.509548 CCTCCACCCTTGGTCCCAAT 61.510 60.000 0.00 0.00 44.35 3.16
192 193 2.160171 CCTCCACCCTTGGTCCCAA 61.160 63.158 0.00 0.00 44.35 4.12
193 194 2.531685 CCTCCACCCTTGGTCCCA 60.532 66.667 0.00 0.00 44.35 4.37
194 195 1.850755 TTCCTCCACCCTTGGTCCC 60.851 63.158 0.00 0.00 44.35 4.46
195 196 1.685820 CTTCCTCCACCCTTGGTCC 59.314 63.158 0.00 0.00 44.35 4.46
196 197 1.685820 CCTTCCTCCACCCTTGGTC 59.314 63.158 0.00 0.00 44.35 4.02
197 198 2.539081 GCCTTCCTCCACCCTTGGT 61.539 63.158 0.00 0.00 44.35 3.67
198 199 2.356667 GCCTTCCTCCACCCTTGG 59.643 66.667 0.00 0.00 45.56 3.61
199 200 2.045926 CGCCTTCCTCCACCCTTG 60.046 66.667 0.00 0.00 0.00 3.61
200 201 2.203938 TCGCCTTCCTCCACCCTT 60.204 61.111 0.00 0.00 0.00 3.95
201 202 2.685380 CTCGCCTTCCTCCACCCT 60.685 66.667 0.00 0.00 0.00 4.34
202 203 3.787001 CCTCGCCTTCCTCCACCC 61.787 72.222 0.00 0.00 0.00 4.61
203 204 3.787001 CCCTCGCCTTCCTCCACC 61.787 72.222 0.00 0.00 0.00 4.61
204 205 3.003763 ACCCTCGCCTTCCTCCAC 61.004 66.667 0.00 0.00 0.00 4.02
205 206 2.683933 GACCCTCGCCTTCCTCCA 60.684 66.667 0.00 0.00 0.00 3.86
206 207 3.471806 GGACCCTCGCCTTCCTCC 61.472 72.222 0.00 0.00 0.00 4.30
207 208 3.839432 CGGACCCTCGCCTTCCTC 61.839 72.222 0.00 0.00 0.00 3.71
218 219 3.782443 ATTCTCGTGCCCGGACCC 61.782 66.667 0.73 0.00 33.95 4.46
219 220 2.511600 CATTCTCGTGCCCGGACC 60.512 66.667 0.73 0.00 33.95 4.46
220 221 2.511600 CCATTCTCGTGCCCGGAC 60.512 66.667 0.73 0.00 33.95 4.79
221 222 2.589157 AACCATTCTCGTGCCCGGA 61.589 57.895 0.73 0.00 33.95 5.14
222 223 2.046314 AACCATTCTCGTGCCCGG 60.046 61.111 0.00 0.00 33.95 5.73
223 224 0.953471 TTCAACCATTCTCGTGCCCG 60.953 55.000 0.00 0.00 0.00 6.13
224 225 0.804989 CTTCAACCATTCTCGTGCCC 59.195 55.000 0.00 0.00 0.00 5.36
225 226 0.804989 CCTTCAACCATTCTCGTGCC 59.195 55.000 0.00 0.00 0.00 5.01
226 227 1.464997 GTCCTTCAACCATTCTCGTGC 59.535 52.381 0.00 0.00 0.00 5.34
227 228 1.726791 CGTCCTTCAACCATTCTCGTG 59.273 52.381 0.00 0.00 0.00 4.35
228 229 1.616865 TCGTCCTTCAACCATTCTCGT 59.383 47.619 0.00 0.00 0.00 4.18
229 230 2.363788 TCGTCCTTCAACCATTCTCG 57.636 50.000 0.00 0.00 0.00 4.04
230 231 2.939103 CCATCGTCCTTCAACCATTCTC 59.061 50.000 0.00 0.00 0.00 2.87
231 232 2.356125 CCCATCGTCCTTCAACCATTCT 60.356 50.000 0.00 0.00 0.00 2.40
232 233 2.017049 CCCATCGTCCTTCAACCATTC 58.983 52.381 0.00 0.00 0.00 2.67
233 234 1.633432 TCCCATCGTCCTTCAACCATT 59.367 47.619 0.00 0.00 0.00 3.16
234 235 1.210478 CTCCCATCGTCCTTCAACCAT 59.790 52.381 0.00 0.00 0.00 3.55
235 236 0.613260 CTCCCATCGTCCTTCAACCA 59.387 55.000 0.00 0.00 0.00 3.67
236 237 0.107654 CCTCCCATCGTCCTTCAACC 60.108 60.000 0.00 0.00 0.00 3.77
237 238 0.902531 TCCTCCCATCGTCCTTCAAC 59.097 55.000 0.00 0.00 0.00 3.18
238 239 1.195115 CTCCTCCCATCGTCCTTCAA 58.805 55.000 0.00 0.00 0.00 2.69
239 240 0.687757 CCTCCTCCCATCGTCCTTCA 60.688 60.000 0.00 0.00 0.00 3.02
240 241 0.397254 TCCTCCTCCCATCGTCCTTC 60.397 60.000 0.00 0.00 0.00 3.46
241 242 0.042731 TTCCTCCTCCCATCGTCCTT 59.957 55.000 0.00 0.00 0.00 3.36
242 243 0.397816 CTTCCTCCTCCCATCGTCCT 60.398 60.000 0.00 0.00 0.00 3.85
243 244 1.403687 CCTTCCTCCTCCCATCGTCC 61.404 65.000 0.00 0.00 0.00 4.79
244 245 1.403687 CCCTTCCTCCTCCCATCGTC 61.404 65.000 0.00 0.00 0.00 4.20
245 246 1.383248 CCCTTCCTCCTCCCATCGT 60.383 63.158 0.00 0.00 0.00 3.73
246 247 0.983378 AACCCTTCCTCCTCCCATCG 60.983 60.000 0.00 0.00 0.00 3.84
247 248 1.299939 AAACCCTTCCTCCTCCCATC 58.700 55.000 0.00 0.00 0.00 3.51
248 249 1.359130 CAAAACCCTTCCTCCTCCCAT 59.641 52.381 0.00 0.00 0.00 4.00
249 250 0.777446 CAAAACCCTTCCTCCTCCCA 59.223 55.000 0.00 0.00 0.00 4.37
250 251 1.073098 TCAAAACCCTTCCTCCTCCC 58.927 55.000 0.00 0.00 0.00 4.30
251 252 2.621668 CCATCAAAACCCTTCCTCCTCC 60.622 54.545 0.00 0.00 0.00 4.30
252 253 2.308866 TCCATCAAAACCCTTCCTCCTC 59.691 50.000 0.00 0.00 0.00 3.71
253 254 2.358258 TCCATCAAAACCCTTCCTCCT 58.642 47.619 0.00 0.00 0.00 3.69
254 255 2.899303 TCCATCAAAACCCTTCCTCC 57.101 50.000 0.00 0.00 0.00 4.30
255 256 4.528206 ACAAATCCATCAAAACCCTTCCTC 59.472 41.667 0.00 0.00 0.00 3.71
256 257 4.492646 ACAAATCCATCAAAACCCTTCCT 58.507 39.130 0.00 0.00 0.00 3.36
257 258 4.890158 ACAAATCCATCAAAACCCTTCC 57.110 40.909 0.00 0.00 0.00 3.46
258 259 4.452114 GCAACAAATCCATCAAAACCCTTC 59.548 41.667 0.00 0.00 0.00 3.46
259 260 4.141528 TGCAACAAATCCATCAAAACCCTT 60.142 37.500 0.00 0.00 0.00 3.95
260 261 3.390639 TGCAACAAATCCATCAAAACCCT 59.609 39.130 0.00 0.00 0.00 4.34
261 262 3.737850 TGCAACAAATCCATCAAAACCC 58.262 40.909 0.00 0.00 0.00 4.11
262 263 5.945466 ATTGCAACAAATCCATCAAAACC 57.055 34.783 0.00 0.00 0.00 3.27
263 264 6.637658 CCAAATTGCAACAAATCCATCAAAAC 59.362 34.615 0.00 0.00 0.00 2.43
264 265 6.238953 CCCAAATTGCAACAAATCCATCAAAA 60.239 34.615 0.00 0.00 0.00 2.44
265 266 5.241064 CCCAAATTGCAACAAATCCATCAAA 59.759 36.000 0.00 0.00 0.00 2.69
266 267 4.760715 CCCAAATTGCAACAAATCCATCAA 59.239 37.500 0.00 0.00 0.00 2.57
267 268 4.325119 CCCAAATTGCAACAAATCCATCA 58.675 39.130 0.00 0.00 0.00 3.07
268 269 3.690628 CCCCAAATTGCAACAAATCCATC 59.309 43.478 0.00 0.00 0.00 3.51
269 270 3.074242 ACCCCAAATTGCAACAAATCCAT 59.926 39.130 0.00 0.00 0.00 3.41
270 271 2.441001 ACCCCAAATTGCAACAAATCCA 59.559 40.909 0.00 0.00 0.00 3.41
271 272 2.813172 CACCCCAAATTGCAACAAATCC 59.187 45.455 0.00 0.00 0.00 3.01
272 273 2.813172 CCACCCCAAATTGCAACAAATC 59.187 45.455 0.00 0.00 0.00 2.17
273 274 2.488710 CCCACCCCAAATTGCAACAAAT 60.489 45.455 0.00 0.00 0.00 2.32
274 275 1.133976 CCCACCCCAAATTGCAACAAA 60.134 47.619 0.00 0.00 0.00 2.83
275 276 0.471617 CCCACCCCAAATTGCAACAA 59.528 50.000 0.00 0.00 0.00 2.83
276 277 1.414061 CCCCACCCCAAATTGCAACA 61.414 55.000 0.00 0.00 0.00 3.33
277 278 1.374568 CCCCACCCCAAATTGCAAC 59.625 57.895 0.00 0.00 0.00 4.17
278 279 1.074167 ACCCCACCCCAAATTGCAA 60.074 52.632 0.00 0.00 0.00 4.08
279 280 1.535202 GACCCCACCCCAAATTGCA 60.535 57.895 0.00 0.00 0.00 4.08
280 281 2.645192 CGACCCCACCCCAAATTGC 61.645 63.158 0.00 0.00 0.00 3.56
281 282 1.981853 CCGACCCCACCCCAAATTG 60.982 63.158 0.00 0.00 0.00 2.32
282 283 2.443324 CCGACCCCACCCCAAATT 59.557 61.111 0.00 0.00 0.00 1.82
283 284 3.668142 CCCGACCCCACCCCAAAT 61.668 66.667 0.00 0.00 0.00 2.32
288 289 4.735358 GAAAGCCCGACCCCACCC 62.735 72.222 0.00 0.00 0.00 4.61
289 290 3.920093 CTGAAAGCCCGACCCCACC 62.920 68.421 0.00 0.00 0.00 4.61
290 291 2.359975 CTGAAAGCCCGACCCCAC 60.360 66.667 0.00 0.00 0.00 4.61
291 292 2.406002 GAACTGAAAGCCCGACCCCA 62.406 60.000 0.00 0.00 37.60 4.96
292 293 1.674651 GAACTGAAAGCCCGACCCC 60.675 63.158 0.00 0.00 37.60 4.95
293 294 1.674651 GGAACTGAAAGCCCGACCC 60.675 63.158 0.00 0.00 37.60 4.46
294 295 3.982829 GGAACTGAAAGCCCGACC 58.017 61.111 0.00 0.00 37.60 4.79
298 299 1.301479 ACGTCGGAACTGAAAGCCC 60.301 57.895 0.00 0.00 37.60 5.19
299 300 1.566018 CCACGTCGGAACTGAAAGCC 61.566 60.000 0.00 0.00 34.27 4.35
300 301 1.860078 CCACGTCGGAACTGAAAGC 59.140 57.895 0.00 0.00 34.27 3.51
301 302 1.860078 GCCACGTCGGAACTGAAAG 59.140 57.895 8.04 0.00 37.01 2.62
302 303 1.952133 CGCCACGTCGGAACTGAAA 60.952 57.895 8.04 0.00 36.56 2.69
303 304 2.355363 CGCCACGTCGGAACTGAA 60.355 61.111 8.04 0.00 36.56 3.02
327 328 4.016706 GATATGGGGGCGTCCGGG 62.017 72.222 0.00 0.00 36.01 5.73
328 329 4.016706 GGATATGGGGGCGTCCGG 62.017 72.222 0.00 0.00 36.01 5.14
329 330 3.238497 TGGATATGGGGGCGTCCG 61.238 66.667 0.00 0.00 36.01 4.79
330 331 2.430367 GTGGATATGGGGGCGTCC 59.570 66.667 0.00 0.00 0.00 4.79
331 332 2.113243 GAGGTGGATATGGGGGCGTC 62.113 65.000 0.00 0.00 0.00 5.19
332 333 2.039831 AGGTGGATATGGGGGCGT 60.040 61.111 0.00 0.00 0.00 5.68
333 334 1.492133 ATGAGGTGGATATGGGGGCG 61.492 60.000 0.00 0.00 0.00 6.13
334 335 1.668826 TATGAGGTGGATATGGGGGC 58.331 55.000 0.00 0.00 0.00 5.80
335 336 4.570505 CCAAATATGAGGTGGATATGGGGG 60.571 50.000 0.00 0.00 34.05 5.40
336 337 4.292041 TCCAAATATGAGGTGGATATGGGG 59.708 45.833 0.00 0.00 36.51 4.96
337 338 5.014544 AGTCCAAATATGAGGTGGATATGGG 59.985 44.000 0.00 0.00 43.19 4.00
338 339 6.131972 AGTCCAAATATGAGGTGGATATGG 57.868 41.667 0.00 0.00 43.19 2.74
339 340 7.226441 TCAAGTCCAAATATGAGGTGGATATG 58.774 38.462 0.00 0.00 43.19 1.78
340 341 7.392766 TCAAGTCCAAATATGAGGTGGATAT 57.607 36.000 0.00 0.00 43.19 1.63
341 342 6.823286 TCAAGTCCAAATATGAGGTGGATA 57.177 37.500 0.00 0.00 43.19 2.59
342 343 5.715439 TCAAGTCCAAATATGAGGTGGAT 57.285 39.130 0.00 0.00 43.19 3.41
343 344 5.715439 ATCAAGTCCAAATATGAGGTGGA 57.285 39.130 0.00 0.00 39.14 4.02
344 345 8.597167 TCTATATCAAGTCCAAATATGAGGTGG 58.403 37.037 0.00 0.00 0.00 4.61
345 346 9.650539 CTCTATATCAAGTCCAAATATGAGGTG 57.349 37.037 0.00 0.00 0.00 4.00
346 347 8.820831 CCTCTATATCAAGTCCAAATATGAGGT 58.179 37.037 0.00 0.00 32.77 3.85
347 348 8.263640 CCCTCTATATCAAGTCCAAATATGAGG 58.736 40.741 0.00 0.00 34.57 3.86
348 349 8.820831 ACCCTCTATATCAAGTCCAAATATGAG 58.179 37.037 0.00 0.00 0.00 2.90
349 350 8.597167 CACCCTCTATATCAAGTCCAAATATGA 58.403 37.037 0.00 0.00 0.00 2.15
350 351 7.335422 GCACCCTCTATATCAAGTCCAAATATG 59.665 40.741 0.00 0.00 0.00 1.78
351 352 7.398024 GCACCCTCTATATCAAGTCCAAATAT 58.602 38.462 0.00 0.00 0.00 1.28
352 353 6.239887 GGCACCCTCTATATCAAGTCCAAATA 60.240 42.308 0.00 0.00 0.00 1.40
353 354 5.456763 GGCACCCTCTATATCAAGTCCAAAT 60.457 44.000 0.00 0.00 0.00 2.32
354 355 4.141482 GGCACCCTCTATATCAAGTCCAAA 60.141 45.833 0.00 0.00 0.00 3.28
355 356 3.391296 GGCACCCTCTATATCAAGTCCAA 59.609 47.826 0.00 0.00 0.00 3.53
356 357 2.972713 GGCACCCTCTATATCAAGTCCA 59.027 50.000 0.00 0.00 0.00 4.02
357 358 2.028930 CGGCACCCTCTATATCAAGTCC 60.029 54.545 0.00 0.00 0.00 3.85
358 359 2.028930 CCGGCACCCTCTATATCAAGTC 60.029 54.545 0.00 0.00 0.00 3.01
359 360 1.971357 CCGGCACCCTCTATATCAAGT 59.029 52.381 0.00 0.00 0.00 3.16
360 361 1.971357 ACCGGCACCCTCTATATCAAG 59.029 52.381 0.00 0.00 0.00 3.02
361 362 1.968493 GACCGGCACCCTCTATATCAA 59.032 52.381 0.00 0.00 0.00 2.57
362 363 1.133294 TGACCGGCACCCTCTATATCA 60.133 52.381 0.00 0.00 0.00 2.15
363 364 1.546476 CTGACCGGCACCCTCTATATC 59.454 57.143 0.00 0.00 0.00 1.63
364 365 1.633774 CTGACCGGCACCCTCTATAT 58.366 55.000 0.00 0.00 0.00 0.86
365 366 1.113517 GCTGACCGGCACCCTCTATA 61.114 60.000 0.00 0.00 0.00 1.31
366 367 2.435693 GCTGACCGGCACCCTCTAT 61.436 63.158 0.00 0.00 0.00 1.98
367 368 3.075005 GCTGACCGGCACCCTCTA 61.075 66.667 0.00 0.00 0.00 2.43
378 379 0.039074 CTCATACGATCGGGCTGACC 60.039 60.000 20.98 0.00 0.00 4.02
379 380 0.039074 CCTCATACGATCGGGCTGAC 60.039 60.000 20.98 0.00 0.00 3.51
380 381 1.806461 GCCTCATACGATCGGGCTGA 61.806 60.000 20.98 16.49 39.68 4.26
381 382 1.373497 GCCTCATACGATCGGGCTG 60.373 63.158 20.98 13.14 39.68 4.85
382 383 2.574955 GGCCTCATACGATCGGGCT 61.575 63.158 24.97 7.06 42.14 5.19
383 384 2.048127 GGCCTCATACGATCGGGC 60.048 66.667 20.98 20.49 41.80 6.13
384 385 0.393077 AAAGGCCTCATACGATCGGG 59.607 55.000 20.98 11.47 0.00 5.14
385 386 2.240493 AAAAGGCCTCATACGATCGG 57.760 50.000 20.98 1.30 0.00 4.18
386 387 4.211374 CCTTAAAAAGGCCTCATACGATCG 59.789 45.833 14.88 14.88 42.78 3.69
387 388 5.674933 CCTTAAAAAGGCCTCATACGATC 57.325 43.478 5.23 0.00 42.78 3.69
398 399 5.843630 TCCAAATGGGCTCCTTAAAAAGGC 61.844 45.833 0.00 2.61 42.03 4.35
399 400 3.837731 TCCAAATGGGCTCCTTAAAAAGG 59.162 43.478 0.00 0.00 43.01 3.11
400 401 5.682234 ATCCAAATGGGCTCCTTAAAAAG 57.318 39.130 0.00 0.00 36.21 2.27
401 402 7.560796 TTTATCCAAATGGGCTCCTTAAAAA 57.439 32.000 0.00 0.00 36.21 1.94
402 403 7.560796 TTTTATCCAAATGGGCTCCTTAAAA 57.439 32.000 0.00 0.30 36.21 1.52
403 404 7.560796 TTTTTATCCAAATGGGCTCCTTAAA 57.439 32.000 0.00 0.00 36.21 1.52
425 426 6.038603 CCGGTCACTGTATGATCATGATTTTT 59.961 38.462 18.72 0.64 38.50 1.94
426 427 5.528690 CCGGTCACTGTATGATCATGATTTT 59.471 40.000 18.72 3.20 38.50 1.82
427 428 5.059161 CCGGTCACTGTATGATCATGATTT 58.941 41.667 18.72 3.57 38.50 2.17
428 429 4.344968 TCCGGTCACTGTATGATCATGATT 59.655 41.667 18.72 0.00 38.50 2.57
429 430 3.897505 TCCGGTCACTGTATGATCATGAT 59.102 43.478 18.72 8.25 38.50 2.45
430 431 3.068165 GTCCGGTCACTGTATGATCATGA 59.932 47.826 18.72 5.12 38.50 3.07
431 432 3.384668 GTCCGGTCACTGTATGATCATG 58.615 50.000 18.72 4.21 38.50 3.07
432 433 2.034685 CGTCCGGTCACTGTATGATCAT 59.965 50.000 13.81 13.81 38.50 2.45
433 434 1.404035 CGTCCGGTCACTGTATGATCA 59.596 52.381 0.00 0.00 38.50 2.92
434 435 1.269102 CCGTCCGGTCACTGTATGATC 60.269 57.143 0.00 0.00 40.28 2.92
435 436 0.744874 CCGTCCGGTCACTGTATGAT 59.255 55.000 0.00 0.00 40.28 2.45
436 437 1.940883 GCCGTCCGGTCACTGTATGA 61.941 60.000 7.66 0.00 37.65 2.15
437 438 1.518572 GCCGTCCGGTCACTGTATG 60.519 63.158 7.66 0.00 37.65 2.39
438 439 1.664321 GAGCCGTCCGGTCACTGTAT 61.664 60.000 7.66 0.00 38.92 2.29
439 440 2.282674 AGCCGTCCGGTCACTGTA 60.283 61.111 7.66 0.00 37.65 2.74
440 441 3.681835 GAGCCGTCCGGTCACTGT 61.682 66.667 7.66 0.00 38.92 3.55
441 442 4.778415 CGAGCCGTCCGGTCACTG 62.778 72.222 7.66 0.00 39.03 3.66
458 459 3.569690 CGTTTCATACGCCCGGGC 61.570 66.667 36.69 36.69 44.26 6.13
476 477 4.050828 ATGATGCATCACAGCTCTACAGC 61.051 47.826 30.92 0.00 42.17 4.40
477 478 3.175109 TGATGCATCACAGCTCTACAG 57.825 47.619 25.42 0.00 35.06 2.74
478 479 3.118519 ACATGATGCATCACAGCTCTACA 60.119 43.478 30.92 5.67 40.03 2.74
479 480 3.464907 ACATGATGCATCACAGCTCTAC 58.535 45.455 30.92 0.00 40.03 2.59
480 481 3.832615 ACATGATGCATCACAGCTCTA 57.167 42.857 30.92 6.54 40.03 2.43
481 482 2.683362 CAACATGATGCATCACAGCTCT 59.317 45.455 30.92 11.96 40.03 4.09
482 483 2.422479 ACAACATGATGCATCACAGCTC 59.578 45.455 30.92 2.51 40.03 4.09
483 484 2.163613 CACAACATGATGCATCACAGCT 59.836 45.455 30.92 15.25 40.03 4.24
484 485 2.526077 CACAACATGATGCATCACAGC 58.474 47.619 30.92 3.19 40.03 4.40
485 486 2.750712 TCCACAACATGATGCATCACAG 59.249 45.455 30.92 26.13 40.03 3.66
486 487 2.792878 TCCACAACATGATGCATCACA 58.207 42.857 30.92 11.23 40.03 3.58
487 488 3.766151 CTTCCACAACATGATGCATCAC 58.234 45.455 30.92 4.84 40.03 3.06
488 489 2.164827 GCTTCCACAACATGATGCATCA 59.835 45.455 30.47 30.47 41.70 3.07
489 490 2.480759 GGCTTCCACAACATGATGCATC 60.481 50.000 20.14 20.14 34.38 3.91
490 491 1.479323 GGCTTCCACAACATGATGCAT 59.521 47.619 0.00 0.00 34.38 3.96
491 492 0.889994 GGCTTCCACAACATGATGCA 59.110 50.000 0.00 0.00 34.38 3.96
492 493 0.889994 TGGCTTCCACAACATGATGC 59.110 50.000 0.00 0.00 0.00 3.91
493 494 3.880047 AATGGCTTCCACAACATGATG 57.120 42.857 0.00 0.00 35.80 3.07
494 495 3.833650 TCAAATGGCTTCCACAACATGAT 59.166 39.130 0.00 0.00 35.80 2.45
495 496 3.229293 TCAAATGGCTTCCACAACATGA 58.771 40.909 0.00 0.00 35.80 3.07
496 497 3.663995 TCAAATGGCTTCCACAACATG 57.336 42.857 0.00 0.00 35.80 3.21
497 498 3.196254 GGATCAAATGGCTTCCACAACAT 59.804 43.478 0.00 0.00 35.80 2.71
498 499 2.562298 GGATCAAATGGCTTCCACAACA 59.438 45.455 0.00 0.00 35.80 3.33
499 500 2.415893 CGGATCAAATGGCTTCCACAAC 60.416 50.000 0.00 0.00 35.80 3.32
500 501 1.818060 CGGATCAAATGGCTTCCACAA 59.182 47.619 0.00 0.00 35.80 3.33
501 502 1.462616 CGGATCAAATGGCTTCCACA 58.537 50.000 0.00 0.00 35.80 4.17
502 503 0.101219 GCGGATCAAATGGCTTCCAC 59.899 55.000 0.00 0.00 35.80 4.02
503 504 0.323269 TGCGGATCAAATGGCTTCCA 60.323 50.000 0.00 0.00 38.19 3.53
504 505 1.035139 ATGCGGATCAAATGGCTTCC 58.965 50.000 0.00 0.00 0.00 3.46
505 506 2.466846 CAATGCGGATCAAATGGCTTC 58.533 47.619 0.00 0.00 0.00 3.86
506 507 1.137479 CCAATGCGGATCAAATGGCTT 59.863 47.619 0.00 0.00 36.56 4.35
507 508 0.748450 CCAATGCGGATCAAATGGCT 59.252 50.000 0.00 0.00 36.56 4.75
508 509 0.461135 ACCAATGCGGATCAAATGGC 59.539 50.000 5.37 0.00 38.56 4.40
509 510 2.795681 CGAACCAATGCGGATCAAATGG 60.796 50.000 4.01 4.01 36.35 3.16
510 511 2.159393 ACGAACCAATGCGGATCAAATG 60.159 45.455 0.00 0.00 36.35 2.32
511 512 2.091541 ACGAACCAATGCGGATCAAAT 58.908 42.857 0.00 0.00 36.35 2.32
512 513 1.198867 CACGAACCAATGCGGATCAAA 59.801 47.619 0.00 0.00 36.35 2.69
513 514 0.801872 CACGAACCAATGCGGATCAA 59.198 50.000 0.00 0.00 36.35 2.57
514 515 0.036858 TCACGAACCAATGCGGATCA 60.037 50.000 0.00 0.00 36.35 2.92
515 516 1.003545 CATCACGAACCAATGCGGATC 60.004 52.381 0.00 0.00 38.63 3.36
516 517 1.016627 CATCACGAACCAATGCGGAT 58.983 50.000 0.00 0.00 38.63 4.18
517 518 1.643868 GCATCACGAACCAATGCGGA 61.644 55.000 0.00 0.00 36.75 5.54
518 519 1.226379 GCATCACGAACCAATGCGG 60.226 57.895 0.00 0.00 36.75 5.69
519 520 0.109827 TTGCATCACGAACCAATGCG 60.110 50.000 0.00 0.00 46.86 4.73
520 521 2.063156 TTTGCATCACGAACCAATGC 57.937 45.000 0.00 0.00 44.72 3.56
521 522 4.143073 CCAATTTTGCATCACGAACCAATG 60.143 41.667 0.00 0.00 0.00 2.82
522 523 3.995705 CCAATTTTGCATCACGAACCAAT 59.004 39.130 0.00 0.00 0.00 3.16
523 524 3.388308 CCAATTTTGCATCACGAACCAA 58.612 40.909 0.00 0.00 0.00 3.67
524 525 2.288702 CCCAATTTTGCATCACGAACCA 60.289 45.455 0.00 0.00 0.00 3.67
525 526 2.336667 CCCAATTTTGCATCACGAACC 58.663 47.619 0.00 0.00 0.00 3.62
526 527 1.726248 GCCCAATTTTGCATCACGAAC 59.274 47.619 0.00 0.00 0.00 3.95
527 528 1.668337 CGCCCAATTTTGCATCACGAA 60.668 47.619 0.00 0.00 0.00 3.85
528 529 0.109365 CGCCCAATTTTGCATCACGA 60.109 50.000 0.00 0.00 0.00 4.35
529 530 0.109365 TCGCCCAATTTTGCATCACG 60.109 50.000 0.00 0.00 0.00 4.35
530 531 2.195922 GATCGCCCAATTTTGCATCAC 58.804 47.619 0.00 0.00 0.00 3.06
531 532 1.823610 TGATCGCCCAATTTTGCATCA 59.176 42.857 0.00 3.19 0.00 3.07
532 533 2.466846 CTGATCGCCCAATTTTGCATC 58.533 47.619 0.00 1.14 0.00 3.91
533 534 1.137479 CCTGATCGCCCAATTTTGCAT 59.863 47.619 0.00 0.00 0.00 3.96
534 535 0.531657 CCTGATCGCCCAATTTTGCA 59.468 50.000 0.00 0.00 0.00 4.08
535 536 0.807275 GCCTGATCGCCCAATTTTGC 60.807 55.000 0.00 0.00 0.00 3.68
536 537 0.526096 CGCCTGATCGCCCAATTTTG 60.526 55.000 0.00 0.00 0.00 2.44
537 538 0.965363 ACGCCTGATCGCCCAATTTT 60.965 50.000 0.00 0.00 0.00 1.82
538 539 0.965363 AACGCCTGATCGCCCAATTT 60.965 50.000 0.00 0.00 0.00 1.82
539 540 1.378514 AACGCCTGATCGCCCAATT 60.379 52.632 0.00 0.00 0.00 2.32
540 541 2.114670 CAACGCCTGATCGCCCAAT 61.115 57.895 0.00 0.00 0.00 3.16
541 542 2.173758 TACAACGCCTGATCGCCCAA 62.174 55.000 0.00 0.00 0.00 4.12
542 543 2.651105 TACAACGCCTGATCGCCCA 61.651 57.895 0.00 0.00 0.00 5.36
543 544 2.171725 GTACAACGCCTGATCGCCC 61.172 63.158 0.00 0.00 0.00 6.13
544 545 2.171725 GGTACAACGCCTGATCGCC 61.172 63.158 0.00 0.00 0.00 5.54
545 546 2.514013 CGGTACAACGCCTGATCGC 61.514 63.158 0.00 0.00 0.00 4.58
546 547 0.866061 CTCGGTACAACGCCTGATCG 60.866 60.000 0.00 0.00 0.00 3.69
547 548 0.527817 CCTCGGTACAACGCCTGATC 60.528 60.000 0.00 0.00 0.00 2.92
548 549 0.968901 TCCTCGGTACAACGCCTGAT 60.969 55.000 0.00 0.00 0.00 2.90
549 550 1.604308 TCCTCGGTACAACGCCTGA 60.604 57.895 0.00 0.00 0.00 3.86
550 551 1.445582 GTCCTCGGTACAACGCCTG 60.446 63.158 0.00 0.00 0.00 4.85
551 552 2.968206 GTCCTCGGTACAACGCCT 59.032 61.111 0.00 0.00 0.00 5.52
552 553 2.476534 TTCGTCCTCGGTACAACGCC 62.477 60.000 0.00 0.00 37.69 5.68
553 554 0.664166 TTTCGTCCTCGGTACAACGC 60.664 55.000 0.00 0.00 37.69 4.84
554 555 1.986698 ATTTCGTCCTCGGTACAACG 58.013 50.000 0.00 0.00 37.69 4.10
555 556 3.122445 GTCAATTTCGTCCTCGGTACAAC 59.878 47.826 0.00 0.00 37.69 3.32
556 557 3.319755 GTCAATTTCGTCCTCGGTACAA 58.680 45.455 0.00 0.00 37.69 2.41
557 558 2.353011 GGTCAATTTCGTCCTCGGTACA 60.353 50.000 0.00 0.00 37.69 2.90
558 559 2.265683 GGTCAATTTCGTCCTCGGTAC 58.734 52.381 0.00 0.00 37.69 3.34
559 560 1.135315 CGGTCAATTTCGTCCTCGGTA 60.135 52.381 0.00 0.00 37.69 4.02
560 561 0.389426 CGGTCAATTTCGTCCTCGGT 60.389 55.000 0.00 0.00 37.69 4.69
561 562 1.082117 CCGGTCAATTTCGTCCTCGG 61.082 60.000 0.00 0.00 37.69 4.63
562 563 0.389426 ACCGGTCAATTTCGTCCTCG 60.389 55.000 0.00 0.00 38.55 4.63
563 564 2.265683 GTACCGGTCAATTTCGTCCTC 58.734 52.381 12.40 0.00 0.00 3.71
564 565 1.066645 GGTACCGGTCAATTTCGTCCT 60.067 52.381 12.40 0.00 0.00 3.85
565 566 1.362768 GGTACCGGTCAATTTCGTCC 58.637 55.000 12.40 0.00 0.00 4.79
566 567 0.994263 CGGTACCGGTCAATTTCGTC 59.006 55.000 27.00 0.00 35.56 4.20
567 568 3.126729 CGGTACCGGTCAATTTCGT 57.873 52.632 27.00 0.00 35.56 3.85
596 597 2.183555 GCTTCAGGTACCGGTCGG 59.816 66.667 12.40 7.97 42.03 4.79
608 609 1.680989 TCGTCCGGATCCAGCTTCA 60.681 57.895 7.81 0.00 0.00 3.02
630 631 2.434359 GCCCGACCAGAAACCTCG 60.434 66.667 0.00 0.00 0.00 4.63
637 638 2.835764 ACTAAATAGTTGCCCGACCAGA 59.164 45.455 0.00 0.00 31.13 3.86
638 639 2.936498 CACTAAATAGTTGCCCGACCAG 59.064 50.000 0.00 0.00 33.46 4.00
643 648 0.655733 CCGCACTAAATAGTTGCCCG 59.344 55.000 8.44 2.90 33.46 6.13
645 650 0.380733 GCCCGCACTAAATAGTTGCC 59.619 55.000 8.44 0.00 33.46 4.52
647 652 1.064060 GCTGCCCGCACTAAATAGTTG 59.936 52.381 0.00 0.00 38.92 3.16
671 676 2.513897 GATGTACGGGCAGGCACC 60.514 66.667 0.00 0.00 0.00 5.01
672 677 0.105964 TATGATGTACGGGCAGGCAC 59.894 55.000 0.00 0.00 0.00 5.01
673 678 1.001974 GATATGATGTACGGGCAGGCA 59.998 52.381 0.00 0.00 0.00 4.75
674 679 1.726853 GATATGATGTACGGGCAGGC 58.273 55.000 0.00 0.00 0.00 4.85
675 680 1.404181 CCGATATGATGTACGGGCAGG 60.404 57.143 0.00 0.00 41.41 4.85
676 681 1.996292 CCGATATGATGTACGGGCAG 58.004 55.000 0.00 0.00 41.41 4.85
745 750 1.445095 CGATGGGGAGAAGAGCAGG 59.555 63.158 0.00 0.00 0.00 4.85
769 774 0.470766 TAGCAGGTTCGTTGGTTGGT 59.529 50.000 0.00 0.00 0.00 3.67
772 777 3.254903 GGATTTTAGCAGGTTCGTTGGTT 59.745 43.478 0.00 0.00 0.00 3.67
773 778 2.817844 GGATTTTAGCAGGTTCGTTGGT 59.182 45.455 0.00 0.00 0.00 3.67
774 779 2.817258 TGGATTTTAGCAGGTTCGTTGG 59.183 45.455 0.00 0.00 0.00 3.77
775 780 3.670627 GCTGGATTTTAGCAGGTTCGTTG 60.671 47.826 0.00 0.00 40.81 4.10
776 781 2.488153 GCTGGATTTTAGCAGGTTCGTT 59.512 45.455 0.00 0.00 40.81 3.85
777 782 2.084546 GCTGGATTTTAGCAGGTTCGT 58.915 47.619 0.00 0.00 40.81 3.85
778 783 1.062587 CGCTGGATTTTAGCAGGTTCG 59.937 52.381 0.00 0.00 41.18 3.95
779 784 2.096013 GTCGCTGGATTTTAGCAGGTTC 59.904 50.000 0.00 0.00 41.18 3.62
793 798 0.108898 CCTCTCAGAAGTGTCGCTGG 60.109 60.000 0.00 0.00 33.05 4.85
812 817 6.396761 CGCGGTTTTATTTTACTGAACGAAAC 60.397 38.462 0.00 0.00 0.00 2.78
815 820 4.377226 CCGCGGTTTTATTTTACTGAACGA 60.377 41.667 19.50 0.00 0.00 3.85
816 821 3.841872 CCGCGGTTTTATTTTACTGAACG 59.158 43.478 19.50 0.00 0.00 3.95
817 822 4.613866 CACCGCGGTTTTATTTTACTGAAC 59.386 41.667 32.11 0.00 0.00 3.18
818 823 4.514441 TCACCGCGGTTTTATTTTACTGAA 59.486 37.500 32.11 0.18 0.00 3.02
887 902 1.201921 CGTGCGGATTTAACACTCTGC 60.202 52.381 5.96 5.96 42.82 4.26
889 904 1.076332 GCGTGCGGATTTAACACTCT 58.924 50.000 0.00 0.00 32.07 3.24
930 955 4.947147 TGGGTTGGCGTGTCTGGC 62.947 66.667 0.00 0.00 0.00 4.85
931 956 2.203280 TTGGGTTGGCGTGTCTGG 60.203 61.111 0.00 0.00 0.00 3.86
939 964 2.444895 TGGGTTGGTTGGGTTGGC 60.445 61.111 0.00 0.00 0.00 4.52
1698 1737 0.543883 AGTGCCTGCTCTTCTCCTCA 60.544 55.000 0.00 0.00 0.00 3.86
1739 1778 1.946768 GAGACTGACCTCCGATCTCTG 59.053 57.143 0.00 0.00 34.28 3.35
1855 1911 2.314323 CTGCCAAACCAGCAGTTTTT 57.686 45.000 4.61 0.00 46.79 1.94
1887 1961 5.186198 ACGACTTATAATTTGGCTTCAGCT 58.814 37.500 0.00 0.00 41.70 4.24
1902 1976 5.938125 GCATGGGAATATTGGTACGACTTAT 59.062 40.000 0.00 0.00 0.00 1.73
1903 1977 5.071250 AGCATGGGAATATTGGTACGACTTA 59.929 40.000 0.00 0.00 0.00 2.24
1905 1979 3.391296 AGCATGGGAATATTGGTACGACT 59.609 43.478 0.00 0.00 0.00 4.18
1906 1980 3.740115 AGCATGGGAATATTGGTACGAC 58.260 45.455 0.00 0.00 0.00 4.34
1907 1981 4.431416 AAGCATGGGAATATTGGTACGA 57.569 40.909 0.00 0.00 0.00 3.43
1908 1982 4.261572 CCAAAGCATGGGAATATTGGTACG 60.262 45.833 0.00 0.00 46.27 3.67
1922 1996 8.797350 TTATGGTATCTATCATCCAAAGCATG 57.203 34.615 0.00 0.00 33.55 4.06
1941 2015 6.206829 GCTCAAACTAAACAGGTTCTTATGGT 59.793 38.462 0.00 0.00 0.00 3.55
1944 2018 6.998673 AGTGCTCAAACTAAACAGGTTCTTAT 59.001 34.615 0.00 0.00 0.00 1.73
1951 2025 5.527582 ACAAGTAGTGCTCAAACTAAACAGG 59.472 40.000 0.00 0.00 34.50 4.00
1955 2029 8.807667 GTACTACAAGTAGTGCTCAAACTAAA 57.192 34.615 20.14 0.00 45.25 1.85
1983 2077 2.001159 TCGAAGCTACTGTCGACTCTC 58.999 52.381 17.92 1.70 41.13 3.20
1989 2083 3.617540 ATCAGATCGAAGCTACTGTCG 57.382 47.619 0.00 0.00 38.62 4.35
1990 2084 4.926244 TCAATCAGATCGAAGCTACTGTC 58.074 43.478 0.00 0.00 0.00 3.51
1991 2085 4.202101 CCTCAATCAGATCGAAGCTACTGT 60.202 45.833 0.00 0.00 0.00 3.55
1992 2086 4.202101 ACCTCAATCAGATCGAAGCTACTG 60.202 45.833 0.00 0.00 0.00 2.74
2032 2126 2.165437 GACAAGTAGAGTGAGCCCTCTG 59.835 54.545 8.09 0.00 41.81 3.35
2046 2140 6.153680 ACAAAACAAAATGGTGAGGACAAGTA 59.846 34.615 0.00 0.00 0.00 2.24
2048 2142 5.418676 ACAAAACAAAATGGTGAGGACAAG 58.581 37.500 0.00 0.00 0.00 3.16
2083 2177 5.108517 GTGAAGAGGCTTCATCTCTAACTG 58.891 45.833 12.42 0.00 40.37 3.16
2112 2230 3.858238 GGCTGTACAGAACGCTAGTTTAG 59.142 47.826 27.08 0.00 41.34 1.85
2113 2231 3.508793 AGGCTGTACAGAACGCTAGTTTA 59.491 43.478 27.08 0.00 41.34 2.01
2114 2232 2.299297 AGGCTGTACAGAACGCTAGTTT 59.701 45.455 27.08 0.00 41.34 2.66
2116 2234 1.546961 AGGCTGTACAGAACGCTAGT 58.453 50.000 27.08 0.00 0.00 2.57
2118 2236 1.616865 ACAAGGCTGTACAGAACGCTA 59.383 47.619 27.08 0.00 32.54 4.26
2120 2238 0.512952 CACAAGGCTGTACAGAACGC 59.487 55.000 27.08 11.66 33.22 4.84
2121 2239 2.148916 TCACAAGGCTGTACAGAACG 57.851 50.000 27.08 12.90 33.22 3.95
2122 2240 4.757149 AGATTTCACAAGGCTGTACAGAAC 59.243 41.667 27.08 17.29 33.22 3.01
2160 2300 7.285401 GCCCTAAAATTGACAGATAAATCTCCA 59.715 37.037 0.00 0.00 34.22 3.86
2161 2301 7.503902 AGCCCTAAAATTGACAGATAAATCTCC 59.496 37.037 0.00 0.00 34.22 3.71
2162 2302 8.457238 AGCCCTAAAATTGACAGATAAATCTC 57.543 34.615 0.00 0.00 34.22 2.75
2289 2429 3.119245 CCCAAAGTGGAAGCAATGATCAG 60.119 47.826 0.09 0.00 40.96 2.90
2303 2443 4.460505 GTCGTTTCGATAAACCCAAAGTG 58.539 43.478 0.00 0.00 41.68 3.16
2409 6040 7.823745 AACAGACAGGTTCATACAGAAATTT 57.176 32.000 0.00 0.00 38.13 1.82
2451 6082 4.700700 CCAGATCAGATGTGTCAAGCATA 58.299 43.478 6.79 0.00 0.00 3.14
2452 6083 3.542648 CCAGATCAGATGTGTCAAGCAT 58.457 45.455 6.79 0.00 0.00 3.79
2454 6085 1.669779 GCCAGATCAGATGTGTCAAGC 59.330 52.381 6.79 0.00 0.00 4.01
2455 6086 2.676839 GTGCCAGATCAGATGTGTCAAG 59.323 50.000 6.79 0.00 0.00 3.02
2493 6132 9.780186 GAAACAAGTACTAGAATAATAGCCCAT 57.220 33.333 0.00 0.00 0.00 4.00
2620 6260 1.266718 CTTGTGTCCCGACATGGTTTG 59.733 52.381 0.03 0.00 43.97 2.93
2621 6261 1.604604 CTTGTGTCCCGACATGGTTT 58.395 50.000 0.03 0.00 43.97 3.27
2700 6354 4.104992 TGTTCGTTTTAATGTCACGACG 57.895 40.909 0.00 0.00 42.40 5.12
2701 6355 6.963017 AATTGTTCGTTTTAATGTCACGAC 57.037 33.333 0.00 0.00 42.40 4.34
2702 6356 8.074474 TCTAATTGTTCGTTTTAATGTCACGA 57.926 30.769 0.00 0.00 41.05 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.