Multiple sequence alignment - TraesCS1B01G363600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G363600 chr1B 100.000 4085 0 0 1 4085 592368234 592364150 0.000000e+00 7544.0
1 TraesCS1B01G363600 chr1B 78.843 1867 337 49 968 2798 9647338 9649182 0.000000e+00 1206.0
2 TraesCS1B01G363600 chr1B 92.437 119 9 0 3317 3435 653831721 653831839 1.950000e-38 171.0
3 TraesCS1B01G363600 chr1D 95.654 3129 91 17 4 3112 437294001 437290898 0.000000e+00 4983.0
4 TraesCS1B01G363600 chr1D 78.080 2021 369 63 968 2946 7371994 7373982 0.000000e+00 1210.0
5 TraesCS1B01G363600 chr1D 92.727 110 8 0 3135 3244 437290838 437290729 4.230000e-35 159.0
6 TraesCS1B01G363600 chr1A 95.241 3152 90 25 178 3323 534274452 534277549 0.000000e+00 4935.0
7 TraesCS1B01G363600 chr1A 76.729 2097 399 67 897 2946 9533173 9531119 0.000000e+00 1086.0
8 TraesCS1B01G363600 chr1A 91.324 657 25 6 3435 4085 534277550 534278180 0.000000e+00 869.0
9 TraesCS1B01G363600 chr1A 94.017 117 7 0 3319 3435 497187118 497187234 1.170000e-40 178.0
10 TraesCS1B01G363600 chr1A 94.915 59 3 0 1 59 534274377 534274435 4.350000e-15 93.5
11 TraesCS1B01G363600 chr2B 75.152 1320 232 68 994 2264 785984561 785983289 2.160000e-147 532.0
12 TraesCS1B01G363600 chr2B 78.443 501 92 13 1030 1522 775385775 775386267 3.070000e-81 313.0
13 TraesCS1B01G363600 chr2B 79.343 426 48 24 8 413 772594296 772593891 3.130000e-66 263.0
14 TraesCS1B01G363600 chr2B 79.059 425 51 23 8 413 477511231 477510826 1.460000e-64 257.0
15 TraesCS1B01G363600 chr2B 90.698 129 10 2 3321 3447 549190581 549190453 1.950000e-38 171.0
16 TraesCS1B01G363600 chr2B 85.821 134 10 6 584 717 772593773 772593649 2.560000e-27 134.0
17 TraesCS1B01G363600 chr5D 73.856 1289 267 52 1010 2251 41878436 41877171 2.240000e-122 449.0
18 TraesCS1B01G363600 chr5D 93.220 118 8 0 3318 3435 118840448 118840565 1.510000e-39 174.0
19 TraesCS1B01G363600 chr5D 91.200 125 11 0 3313 3437 452885293 452885169 1.950000e-38 171.0
20 TraesCS1B01G363600 chr2D 77.247 523 101 13 1009 1522 631983067 631983580 1.440000e-74 291.0
21 TraesCS1B01G363600 chr2A 75.904 498 106 9 1030 1520 759795198 759794708 4.080000e-60 243.0
22 TraesCS1B01G363600 chr2A 78.082 365 39 18 81 412 214739088 214738732 4.170000e-45 193.0
23 TraesCS1B01G363600 chr7D 81.509 265 32 6 458 715 85014112 85013858 6.920000e-48 202.0
24 TraesCS1B01G363600 chr7D 94.783 115 6 0 3321 3435 452449644 452449758 3.240000e-41 180.0
25 TraesCS1B01G363600 chr7D 89.922 129 10 3 3302 3427 155295691 155295819 3.270000e-36 163.0
26 TraesCS1B01G363600 chr7A 94.017 117 7 0 3319 3435 700332475 700332359 1.170000e-40 178.0
27 TraesCS1B01G363600 chr7A 94.017 117 7 0 3319 3435 726506912 726506796 1.170000e-40 178.0
28 TraesCS1B01G363600 chr7A 75.564 266 43 9 459 715 106188268 106188016 1.200000e-20 111.0
29 TraesCS1B01G363600 chr3D 71.927 545 122 26 1730 2257 514680439 514679909 3.310000e-26 130.0
30 TraesCS1B01G363600 chr3D 77.586 174 26 10 545 716 454044332 454044170 4.350000e-15 93.5
31 TraesCS1B01G363600 chr3B 76.190 252 48 9 1730 1975 676967355 676967110 5.550000e-24 122.0
32 TraesCS1B01G363600 chr4A 76.285 253 42 11 459 703 53885276 53885518 7.170000e-23 119.0
33 TraesCS1B01G363600 chr4A 92.593 54 4 0 663 716 529224221 529224168 1.220000e-10 78.7
34 TraesCS1B01G363600 chr5A 92.593 54 4 0 3263 3316 680764622 680764569 1.220000e-10 78.7
35 TraesCS1B01G363600 chr5A 76.000 175 27 6 547 716 548242538 548242374 4.380000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G363600 chr1B 592364150 592368234 4084 True 7544.000000 7544 100.000000 1 4085 1 chr1B.!!$R1 4084
1 TraesCS1B01G363600 chr1B 9647338 9649182 1844 False 1206.000000 1206 78.843000 968 2798 1 chr1B.!!$F1 1830
2 TraesCS1B01G363600 chr1D 437290729 437294001 3272 True 2571.000000 4983 94.190500 4 3244 2 chr1D.!!$R1 3240
3 TraesCS1B01G363600 chr1D 7371994 7373982 1988 False 1210.000000 1210 78.080000 968 2946 1 chr1D.!!$F1 1978
4 TraesCS1B01G363600 chr1A 534274377 534278180 3803 False 1965.833333 4935 93.826667 1 4085 3 chr1A.!!$F2 4084
5 TraesCS1B01G363600 chr1A 9531119 9533173 2054 True 1086.000000 1086 76.729000 897 2946 1 chr1A.!!$R1 2049
6 TraesCS1B01G363600 chr2B 785983289 785984561 1272 True 532.000000 532 75.152000 994 2264 1 chr2B.!!$R3 1270
7 TraesCS1B01G363600 chr5D 41877171 41878436 1265 True 449.000000 449 73.856000 1010 2251 1 chr5D.!!$R1 1241
8 TraesCS1B01G363600 chr2D 631983067 631983580 513 False 291.000000 291 77.247000 1009 1522 1 chr2D.!!$F1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 280 0.319555 CGTCTTCTCCACTTCGCCAA 60.320 55.0 0.00 0.00 0.00 4.52 F
714 738 0.820891 CTACCGAACGCCTAGGCCTA 60.821 60.0 28.09 13.09 37.98 3.93 F
1956 2012 1.269012 CTTGGACATGGGCATGGTTT 58.731 50.0 0.00 0.00 42.91 3.27 F
2622 2720 2.178912 TGGAGGTAAGCAAGGAAACG 57.821 50.0 0.00 0.00 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2225 0.333312 TGACACCCAACAAACCCACT 59.667 50.000 0.00 0.0 0.0 4.00 R
2622 2720 2.893398 CGTGCTACCTCCTCCACC 59.107 66.667 0.00 0.0 0.0 4.61 R
3048 3154 0.604073 TACCAACCACGAAGCGATCA 59.396 50.000 0.00 0.0 0.0 2.92 R
3998 4147 0.530744 TCTCGGTAGCGCAATCTTGT 59.469 50.000 11.47 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.839432 CCTCCGTCCTCGCCTTCC 61.839 72.222 0.00 0.00 35.54 3.46
73 91 2.053291 CGCTAGTCTCGCCGTACG 60.053 66.667 8.69 8.69 45.62 3.67
79 97 3.057548 TCTCGCCGTACGCAAGGA 61.058 61.111 10.49 2.51 43.23 3.36
99 117 3.370104 GAAAGGAGAGAGGACCAGATCA 58.630 50.000 0.00 0.00 0.00 2.92
172 190 0.601057 TCGACTTCGACAGCATCCAA 59.399 50.000 0.00 0.00 44.22 3.53
184 202 2.093075 CAGCATCCAACTCTCCACATCT 60.093 50.000 0.00 0.00 0.00 2.90
262 280 0.319555 CGTCTTCTCCACTTCGCCAA 60.320 55.000 0.00 0.00 0.00 4.52
369 390 9.347934 CTTCGTCCATTATTCTGTATGACTATC 57.652 37.037 0.00 0.00 0.00 2.08
407 428 3.376546 GGATCTTGGATGCACTGTTCTTC 59.623 47.826 0.00 0.00 0.00 2.87
481 505 4.615949 TGCGTTGTTATGCTGTCAAAAAT 58.384 34.783 0.00 0.00 37.19 1.82
529 553 6.256104 TCAATGTGTTCTGAAAGTGCATTTTG 59.744 34.615 12.36 0.00 33.76 2.44
559 583 5.353956 ACGGTACATAATTCGGTTAAAACCC 59.646 40.000 6.30 0.00 46.53 4.11
652 676 5.005299 CACTTTTCCAAACCGAATTCACAAC 59.995 40.000 6.22 0.00 0.00 3.32
655 679 4.035278 TCCAAACCGAATTCACAACAAC 57.965 40.909 6.22 0.00 0.00 3.32
661 685 4.170256 ACCGAATTCACAACAACAACAAC 58.830 39.130 6.22 0.00 0.00 3.32
664 688 5.119279 CCGAATTCACAACAACAACAACAAA 59.881 36.000 6.22 0.00 0.00 2.83
665 689 6.346919 CCGAATTCACAACAACAACAACAAAA 60.347 34.615 6.22 0.00 0.00 2.44
666 690 6.514665 CGAATTCACAACAACAACAACAAAAC 59.485 34.615 6.22 0.00 0.00 2.43
667 691 5.659048 TTCACAACAACAACAACAAAACC 57.341 34.783 0.00 0.00 0.00 3.27
668 692 4.693283 TCACAACAACAACAACAAAACCA 58.307 34.783 0.00 0.00 0.00 3.67
681 705 4.535526 ACAAAACCAAACAGCAGAAACT 57.464 36.364 0.00 0.00 0.00 2.66
689 713 5.812127 ACCAAACAGCAGAAACTGAAATTTC 59.188 36.000 11.41 11.41 40.25 2.17
714 738 0.820891 CTACCGAACGCCTAGGCCTA 60.821 60.000 28.09 13.09 37.98 3.93
776 800 5.514274 TTCTTCCGCATTGTTTCTCTTTT 57.486 34.783 0.00 0.00 0.00 2.27
887 911 5.957842 TGTTGAACATGCCTAGTTAAAGG 57.042 39.130 0.00 0.00 39.87 3.11
1216 1251 1.766143 GCGCCGAGATGTCACCATTC 61.766 60.000 0.00 0.00 0.00 2.67
1232 1267 7.389330 TGTCACCATTCAAACGAACATACTTAT 59.611 33.333 0.00 0.00 0.00 1.73
1571 1621 3.433314 CCTGAAGGAATCTCTGGTGATGG 60.433 52.174 0.00 0.00 37.39 3.51
1761 1811 2.430546 AGTCTCTTGTGCTCAGAACG 57.569 50.000 0.00 0.00 0.00 3.95
1762 1812 1.683917 AGTCTCTTGTGCTCAGAACGT 59.316 47.619 0.00 0.00 0.00 3.99
1860 1916 6.017275 GCAGAGACAATTATAGCAAAGCTGAT 60.017 38.462 1.04 0.00 40.10 2.90
1956 2012 1.269012 CTTGGACATGGGCATGGTTT 58.731 50.000 0.00 0.00 42.91 3.27
2139 2225 4.265893 TGGCTGTGTTCAGAAAGTTGTTA 58.734 39.130 0.00 0.00 43.76 2.41
2252 2338 5.181748 GGAGTGTGTTGCAGAAGAGATTAT 58.818 41.667 0.00 0.00 0.00 1.28
2472 2567 5.465390 CGGTATGATGATTTTGGTATGTCGT 59.535 40.000 0.00 0.00 0.00 4.34
2622 2720 2.178912 TGGAGGTAAGCAAGGAAACG 57.821 50.000 0.00 0.00 0.00 3.60
2915 3015 4.705337 AAGTGCGTTTGACCACTTTTAA 57.295 36.364 0.56 0.00 46.86 1.52
2916 3016 4.911514 AGTGCGTTTGACCACTTTTAAT 57.088 36.364 0.00 0.00 39.11 1.40
2964 3069 4.012374 TCAGAAAAGATTGCTCCATGGAC 58.988 43.478 11.44 8.83 0.00 4.02
3025 3131 6.012113 AGGTCAAAATTGGATGATGAGAACA 58.988 36.000 0.00 0.00 0.00 3.18
3029 3135 5.808042 AAATTGGATGATGAGAACACGAG 57.192 39.130 0.00 0.00 0.00 4.18
3048 3154 3.018149 GAGTGGGATGACGACTAAGTCT 58.982 50.000 0.00 0.00 38.35 3.24
3117 3223 6.318648 TCCATATGTGGTTTTCTTATGTGCTC 59.681 38.462 8.51 0.00 46.16 4.26
3150 3293 4.520492 CAGTAAGGTTCATCTTGCTTGGTT 59.480 41.667 0.00 0.00 37.55 3.67
3152 3295 3.228188 AGGTTCATCTTGCTTGGTTGA 57.772 42.857 0.00 0.00 0.00 3.18
3170 3313 8.574251 TTGGTTGAGCTATTTTCTGCTTATTA 57.426 30.769 0.00 0.00 39.91 0.98
3262 3405 3.067320 TGTCACATTGTGGAATTTGCGAA 59.933 39.130 16.46 0.00 33.87 4.70
3268 3411 7.063191 TCACATTGTGGAATTTGCGAAATTATG 59.937 33.333 16.46 8.53 35.41 1.90
3330 3473 8.726870 TTATTAGAAAACAAATACTCCCTCCG 57.273 34.615 0.00 0.00 0.00 4.63
3331 3474 4.635699 AGAAAACAAATACTCCCTCCGT 57.364 40.909 0.00 0.00 0.00 4.69
3332 3475 4.576879 AGAAAACAAATACTCCCTCCGTC 58.423 43.478 0.00 0.00 0.00 4.79
3333 3476 3.345508 AAACAAATACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
3334 3477 0.822164 ACAAATACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
3335 3478 1.108776 CAAATACTCCCTCCGTCCGA 58.891 55.000 0.00 0.00 0.00 4.55
3336 3479 1.479323 CAAATACTCCCTCCGTCCGAA 59.521 52.381 0.00 0.00 0.00 4.30
3337 3480 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
3338 3481 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
3339 3482 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
3340 3483 0.981943 ACTCCCTCCGTCCGAAAAAT 59.018 50.000 0.00 0.00 0.00 1.82
3341 3484 1.066358 ACTCCCTCCGTCCGAAAAATC 60.066 52.381 0.00 0.00 0.00 2.17
3342 3485 1.207329 CTCCCTCCGTCCGAAAAATCT 59.793 52.381 0.00 0.00 0.00 2.40
3343 3486 1.626825 TCCCTCCGTCCGAAAAATCTT 59.373 47.619 0.00 0.00 0.00 2.40
3344 3487 1.737793 CCCTCCGTCCGAAAAATCTTG 59.262 52.381 0.00 0.00 0.00 3.02
3345 3488 2.423577 CCTCCGTCCGAAAAATCTTGT 58.576 47.619 0.00 0.00 0.00 3.16
3346 3489 2.415512 CCTCCGTCCGAAAAATCTTGTC 59.584 50.000 0.00 0.00 0.00 3.18
3347 3490 2.415512 CTCCGTCCGAAAAATCTTGTCC 59.584 50.000 0.00 0.00 0.00 4.02
3348 3491 1.467342 CCGTCCGAAAAATCTTGTCCC 59.533 52.381 0.00 0.00 0.00 4.46
3349 3492 2.423577 CGTCCGAAAAATCTTGTCCCT 58.576 47.619 0.00 0.00 0.00 4.20
3350 3493 2.415512 CGTCCGAAAAATCTTGTCCCTC 59.584 50.000 0.00 0.00 0.00 4.30
3351 3494 2.415512 GTCCGAAAAATCTTGTCCCTCG 59.584 50.000 0.00 0.00 0.00 4.63
3352 3495 2.300723 TCCGAAAAATCTTGTCCCTCGA 59.699 45.455 0.00 0.00 0.00 4.04
3353 3496 3.071479 CCGAAAAATCTTGTCCCTCGAA 58.929 45.455 0.00 0.00 0.00 3.71
3354 3497 3.689649 CCGAAAAATCTTGTCCCTCGAAT 59.310 43.478 0.00 0.00 0.00 3.34
3355 3498 4.437390 CCGAAAAATCTTGTCCCTCGAATG 60.437 45.833 0.00 0.00 0.00 2.67
3356 3499 4.437390 CGAAAAATCTTGTCCCTCGAATGG 60.437 45.833 0.00 0.00 0.00 3.16
3357 3500 4.301072 AAAATCTTGTCCCTCGAATGGA 57.699 40.909 0.00 0.00 0.00 3.41
3358 3501 4.510167 AAATCTTGTCCCTCGAATGGAT 57.490 40.909 6.62 0.00 33.65 3.41
3359 3502 2.988010 TCTTGTCCCTCGAATGGATG 57.012 50.000 6.62 2.08 33.65 3.51
3360 3503 2.187958 TCTTGTCCCTCGAATGGATGT 58.812 47.619 6.62 0.00 33.65 3.06
3361 3504 3.371034 TCTTGTCCCTCGAATGGATGTA 58.629 45.455 6.62 0.00 33.65 2.29
3362 3505 3.967326 TCTTGTCCCTCGAATGGATGTAT 59.033 43.478 6.62 0.00 33.65 2.29
3363 3506 4.039245 TCTTGTCCCTCGAATGGATGTATC 59.961 45.833 6.62 0.00 33.65 2.24
3364 3507 3.576861 TGTCCCTCGAATGGATGTATCT 58.423 45.455 6.62 0.00 33.65 1.98
3365 3508 4.736473 TGTCCCTCGAATGGATGTATCTA 58.264 43.478 6.62 0.00 33.65 1.98
3366 3509 4.767409 TGTCCCTCGAATGGATGTATCTAG 59.233 45.833 6.62 0.00 33.65 2.43
3367 3510 3.764434 TCCCTCGAATGGATGTATCTAGC 59.236 47.826 0.00 0.00 0.00 3.42
3368 3511 3.511540 CCCTCGAATGGATGTATCTAGCA 59.488 47.826 0.00 0.00 0.00 3.49
3369 3512 4.489810 CCTCGAATGGATGTATCTAGCAC 58.510 47.826 0.00 0.00 0.00 4.40
3370 3513 4.489810 CTCGAATGGATGTATCTAGCACC 58.510 47.826 0.00 0.00 0.00 5.01
3371 3514 3.895041 TCGAATGGATGTATCTAGCACCA 59.105 43.478 0.00 0.00 0.00 4.17
3372 3515 4.343814 TCGAATGGATGTATCTAGCACCAA 59.656 41.667 0.00 0.00 0.00 3.67
3373 3516 4.687948 CGAATGGATGTATCTAGCACCAAG 59.312 45.833 0.00 0.00 0.00 3.61
3374 3517 5.615289 GAATGGATGTATCTAGCACCAAGT 58.385 41.667 0.00 0.00 0.00 3.16
3375 3518 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
3376 3519 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
3377 3520 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
3378 3521 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
3379 3522 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
3391 3534 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3392 3535 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3393 3536 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
3394 3537 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
3395 3538 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
3396 3539 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
3397 3540 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3398 3541 8.486210 AGTTAGTGCTAGATACATCCATTTGAA 58.514 33.333 0.00 0.00 0.00 2.69
3399 3542 9.109393 GTTAGTGCTAGATACATCCATTTGAAA 57.891 33.333 0.00 0.00 0.00 2.69
3400 3543 7.798596 AGTGCTAGATACATCCATTTGAAAG 57.201 36.000 0.00 0.00 0.00 2.62
3401 3544 7.568349 AGTGCTAGATACATCCATTTGAAAGA 58.432 34.615 0.00 0.00 0.00 2.52
3402 3545 7.497249 AGTGCTAGATACATCCATTTGAAAGAC 59.503 37.037 0.00 0.00 0.00 3.01
3403 3546 7.280876 GTGCTAGATACATCCATTTGAAAGACA 59.719 37.037 0.00 0.00 0.00 3.41
3404 3547 7.828717 TGCTAGATACATCCATTTGAAAGACAA 59.171 33.333 0.00 0.00 36.65 3.18
3405 3548 8.341173 GCTAGATACATCCATTTGAAAGACAAG 58.659 37.037 0.00 0.00 39.77 3.16
3406 3549 7.093322 AGATACATCCATTTGAAAGACAAGC 57.907 36.000 0.00 0.00 39.77 4.01
3407 3550 6.888632 AGATACATCCATTTGAAAGACAAGCT 59.111 34.615 0.00 0.00 39.77 3.74
3408 3551 5.796424 ACATCCATTTGAAAGACAAGCTT 57.204 34.783 0.00 0.00 39.77 3.74
3409 3552 5.535333 ACATCCATTTGAAAGACAAGCTTG 58.465 37.500 24.84 24.84 39.77 4.01
3410 3553 5.302568 ACATCCATTTGAAAGACAAGCTTGA 59.697 36.000 32.50 8.10 39.77 3.02
3411 3554 5.443185 TCCATTTGAAAGACAAGCTTGAG 57.557 39.130 32.50 7.94 39.77 3.02
3412 3555 5.132502 TCCATTTGAAAGACAAGCTTGAGA 58.867 37.500 32.50 4.85 39.77 3.27
3413 3556 5.009010 TCCATTTGAAAGACAAGCTTGAGAC 59.991 40.000 32.50 20.78 39.77 3.36
3414 3557 5.221106 CCATTTGAAAGACAAGCTTGAGACA 60.221 40.000 32.50 19.34 39.77 3.41
3415 3558 5.895636 TTTGAAAGACAAGCTTGAGACAA 57.104 34.783 32.50 23.06 39.77 3.18
3416 3559 5.490139 TTGAAAGACAAGCTTGAGACAAG 57.510 39.130 32.50 4.70 36.80 3.16
3417 3560 4.517285 TGAAAGACAAGCTTGAGACAAGT 58.483 39.130 32.50 8.41 36.80 3.16
3418 3561 4.943705 TGAAAGACAAGCTTGAGACAAGTT 59.056 37.500 32.50 14.88 36.80 2.66
3419 3562 5.415701 TGAAAGACAAGCTTGAGACAAGTTT 59.584 36.000 32.50 17.78 36.80 2.66
3420 3563 5.904362 AAGACAAGCTTGAGACAAGTTTT 57.096 34.783 32.50 5.99 34.93 2.43
3421 3564 5.904362 AGACAAGCTTGAGACAAGTTTTT 57.096 34.783 32.50 5.43 0.00 1.94
3460 3603 7.758528 ACTTATACAAATGAACGACTGGAGTAC 59.241 37.037 0.00 0.00 0.00 2.73
3510 3653 8.964476 TGGATTGTAAGATTCCATCTAGTTTC 57.036 34.615 0.00 0.00 39.08 2.78
3559 3702 3.195396 GCTTGAATTAGATTGTGGGCCAA 59.805 43.478 8.40 0.00 37.49 4.52
3638 3781 9.449719 TTCACTCTAATGTCCTTAGGATTTTTC 57.550 33.333 3.52 0.00 37.91 2.29
3639 3782 8.826765 TCACTCTAATGTCCTTAGGATTTTTCT 58.173 33.333 3.52 0.00 37.91 2.52
3640 3783 9.454859 CACTCTAATGTCCTTAGGATTTTTCTT 57.545 33.333 3.52 0.00 37.91 2.52
3710 3853 1.377594 ATGTGCGAGCAAGGCATGA 60.378 52.632 0.00 0.00 43.19 3.07
3804 3947 9.713740 GCATGAAGATTTATCTGTCAGTTTTAG 57.286 33.333 0.00 0.00 37.19 1.85
3812 3960 5.700402 ATCTGTCAGTTTTAGGGCTATGT 57.300 39.130 0.00 0.00 0.00 2.29
3821 3969 6.015434 CAGTTTTAGGGCTATGTTCCACTTTT 60.015 38.462 0.00 0.00 0.00 2.27
3865 4014 3.503363 TCTGCACAGACAAATCCATGTTC 59.497 43.478 0.00 0.00 32.57 3.18
3925 4074 7.201679 CCATGTCTAGTTGATCATTTCTTCCAC 60.202 40.741 0.00 0.00 0.00 4.02
3927 4076 8.134202 TGTCTAGTTGATCATTTCTTCCACTA 57.866 34.615 0.00 0.00 0.00 2.74
3946 4095 4.156922 CACTATGGGTTTAACGAAATGGCA 59.843 41.667 0.00 0.00 0.00 4.92
3957 4106 9.233232 GTTTAACGAAATGGCATTCCTTAATAG 57.767 33.333 14.04 0.00 0.00 1.73
3979 4128 5.403246 AGTGATGATGAGAACTACGACAAC 58.597 41.667 0.00 0.00 0.00 3.32
3980 4129 5.048013 AGTGATGATGAGAACTACGACAACA 60.048 40.000 0.00 0.00 0.00 3.33
3981 4130 5.287274 GTGATGATGAGAACTACGACAACAG 59.713 44.000 0.00 0.00 0.00 3.16
3982 4131 4.848562 TGATGAGAACTACGACAACAGT 57.151 40.909 0.00 0.00 0.00 3.55
3983 4132 5.952526 TGATGAGAACTACGACAACAGTA 57.047 39.130 0.00 0.00 0.00 2.74
3984 4133 6.510879 TGATGAGAACTACGACAACAGTAT 57.489 37.500 0.00 0.00 0.00 2.12
3985 4134 7.619964 TGATGAGAACTACGACAACAGTATA 57.380 36.000 0.00 0.00 0.00 1.47
3986 4135 8.221965 TGATGAGAACTACGACAACAGTATAT 57.778 34.615 0.00 0.00 0.00 0.86
3987 4136 8.683615 TGATGAGAACTACGACAACAGTATATT 58.316 33.333 0.00 0.00 0.00 1.28
3990 4139 9.387257 TGAGAACTACGACAACAGTATATTAGA 57.613 33.333 0.00 0.00 0.00 2.10
4031 4180 1.343465 ACCGAGATTCGTTGGTCACTT 59.657 47.619 0.00 0.00 38.40 3.16
4035 4184 3.679980 CGAGATTCGTTGGTCACTTCAAT 59.320 43.478 0.00 0.00 34.72 2.57
4046 4195 6.558771 TGGTCACTTCAATTTGTGTATGAG 57.441 37.500 0.00 0.00 35.82 2.90
4048 4197 5.048782 GGTCACTTCAATTTGTGTATGAGCA 60.049 40.000 14.20 0.00 34.73 4.26
4059 4208 7.922505 TTTGTGTATGAGCATGTTTGTTTAC 57.077 32.000 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.484203 GCGAGACTAGCGACGGTT 59.516 61.111 4.26 0.00 0.00 4.44
73 91 1.065782 GGTCCTCTCTCCTTTCCTTGC 60.066 57.143 0.00 0.00 0.00 4.01
79 97 3.103742 GTGATCTGGTCCTCTCTCCTTT 58.896 50.000 0.00 0.00 0.00 3.11
136 154 1.739562 GAAGACTCGCAGGCTGGTG 60.740 63.158 17.64 9.69 30.77 4.17
137 155 2.659610 GAAGACTCGCAGGCTGGT 59.340 61.111 17.64 5.53 30.77 4.00
138 156 2.507992 CGAAGACTCGCAGGCTGG 60.508 66.667 17.64 6.64 30.77 4.85
139 157 2.568612 TCGAAGACTCGCAGGCTG 59.431 61.111 10.94 10.94 45.04 4.85
172 190 1.649321 TGCTTGGAGATGTGGAGAGT 58.351 50.000 0.00 0.00 0.00 3.24
184 202 1.962822 CGCTGCTGAGTTGCTTGGA 60.963 57.895 0.00 0.00 0.00 3.53
369 390 5.586243 CCAAGATCCAACTTACCATGTACAG 59.414 44.000 0.33 0.00 0.00 2.74
457 481 3.699779 TTGACAGCATAACAACGCAAA 57.300 38.095 0.00 0.00 0.00 3.68
481 505 9.486497 TTGACAGCATGCATATTTTAAAGAAAA 57.514 25.926 21.98 0.00 42.53 2.29
529 553 2.029970 CCGAATTATGTACCGTGCACAC 59.970 50.000 18.64 8.30 0.00 3.82
652 676 4.024556 TGCTGTTTGGTTTTGTTGTTGTTG 60.025 37.500 0.00 0.00 0.00 3.33
655 679 3.993081 TCTGCTGTTTGGTTTTGTTGTTG 59.007 39.130 0.00 0.00 0.00 3.33
661 685 4.493547 TCAGTTTCTGCTGTTTGGTTTTG 58.506 39.130 0.00 0.00 37.70 2.44
664 688 4.799564 TTTCAGTTTCTGCTGTTTGGTT 57.200 36.364 0.00 0.00 37.70 3.67
665 689 5.343307 AATTTCAGTTTCTGCTGTTTGGT 57.657 34.783 0.00 0.00 37.70 3.67
666 690 5.051508 CGAAATTTCAGTTTCTGCTGTTTGG 60.052 40.000 17.99 0.00 36.25 3.28
667 691 5.051508 CCGAAATTTCAGTTTCTGCTGTTTG 60.052 40.000 17.99 0.00 36.25 2.93
668 692 5.043248 CCGAAATTTCAGTTTCTGCTGTTT 58.957 37.500 17.99 0.00 36.25 2.83
699 723 0.818445 TCTCTAGGCCTAGGCGTTCG 60.818 60.000 34.43 22.71 43.06 3.95
707 731 4.816048 TTCCATCTTCTCTCTAGGCCTA 57.184 45.455 13.09 13.09 0.00 3.93
714 738 4.102367 GGCTAACCATTCCATCTTCTCTCT 59.898 45.833 0.00 0.00 35.26 3.10
776 800 6.048732 ACATATATGCGGTATGTGGAATGA 57.951 37.500 12.79 0.00 40.32 2.57
1216 1251 8.259049 TGGGTTCTTATAAGTATGTTCGTTTG 57.741 34.615 12.19 0.00 0.00 2.93
1232 1267 4.349930 AGAAAGCTAGTGGTTGGGTTCTTA 59.650 41.667 0.00 0.00 33.79 2.10
1571 1621 2.052237 CAGCACGAACAACGCCAC 60.052 61.111 0.00 0.00 46.94 5.01
1761 1811 6.183360 TGCATCTAAGTATAACTCCACTCCAC 60.183 42.308 0.00 0.00 0.00 4.02
1762 1812 5.897250 TGCATCTAAGTATAACTCCACTCCA 59.103 40.000 0.00 0.00 0.00 3.86
1860 1916 3.769739 AGCGAATAGGTGATGGCAATA 57.230 42.857 0.00 0.00 0.00 1.90
1956 2012 4.575885 GTGCATCACACCTTCTAACCTTA 58.424 43.478 0.00 0.00 44.02 2.69
2139 2225 0.333312 TGACACCCAACAAACCCACT 59.667 50.000 0.00 0.00 0.00 4.00
2252 2338 4.600692 TCGGAGTCAAATGTCAAGAGAA 57.399 40.909 0.00 0.00 0.00 2.87
2268 2354 4.881273 TCATTGGGTTTATCAACATCGGAG 59.119 41.667 0.00 0.00 34.15 4.63
2452 2547 6.767902 AGCTTACGACATACCAAAATCATCAT 59.232 34.615 0.00 0.00 0.00 2.45
2622 2720 2.893398 CGTGCTACCTCCTCCACC 59.107 66.667 0.00 0.00 0.00 4.61
3025 3131 1.743958 CTTAGTCGTCATCCCACTCGT 59.256 52.381 0.00 0.00 0.00 4.18
3029 3135 2.753452 TCAGACTTAGTCGTCATCCCAC 59.247 50.000 6.73 0.00 37.67 4.61
3048 3154 0.604073 TACCAACCACGAAGCGATCA 59.396 50.000 0.00 0.00 0.00 2.92
3117 3223 8.383619 CAAGATGAACCTTACTGAGAATAAACG 58.616 37.037 0.00 0.00 0.00 3.60
3150 3293 9.049523 CAGACATAATAAGCAGAAAATAGCTCA 57.950 33.333 0.00 0.00 40.90 4.26
3152 3295 8.834465 CACAGACATAATAAGCAGAAAATAGCT 58.166 33.333 0.00 0.00 44.31 3.32
3203 3346 2.778299 AGCACAAAAGTCCGCTGAATA 58.222 42.857 0.00 0.00 32.33 1.75
3323 3466 1.272807 AGATTTTTCGGACGGAGGGA 58.727 50.000 0.00 0.00 0.00 4.20
3324 3467 1.737793 CAAGATTTTTCGGACGGAGGG 59.262 52.381 0.00 0.00 0.00 4.30
3325 3468 2.415512 GACAAGATTTTTCGGACGGAGG 59.584 50.000 0.00 0.00 0.00 4.30
3326 3469 2.415512 GGACAAGATTTTTCGGACGGAG 59.584 50.000 0.00 0.00 0.00 4.63
3327 3470 2.419667 GGACAAGATTTTTCGGACGGA 58.580 47.619 0.00 0.00 0.00 4.69
3328 3471 1.467342 GGGACAAGATTTTTCGGACGG 59.533 52.381 0.00 0.00 0.00 4.79
3329 3472 2.415512 GAGGGACAAGATTTTTCGGACG 59.584 50.000 0.00 0.00 0.00 4.79
3330 3473 2.415512 CGAGGGACAAGATTTTTCGGAC 59.584 50.000 0.00 0.00 0.00 4.79
3331 3474 2.300723 TCGAGGGACAAGATTTTTCGGA 59.699 45.455 0.00 0.00 0.00 4.55
3332 3475 2.695359 TCGAGGGACAAGATTTTTCGG 58.305 47.619 0.00 0.00 0.00 4.30
3333 3476 4.437390 CCATTCGAGGGACAAGATTTTTCG 60.437 45.833 0.00 0.00 0.00 3.46
3334 3477 4.700213 TCCATTCGAGGGACAAGATTTTTC 59.300 41.667 3.95 0.00 0.00 2.29
3335 3478 4.662278 TCCATTCGAGGGACAAGATTTTT 58.338 39.130 3.95 0.00 0.00 1.94
3336 3479 4.301072 TCCATTCGAGGGACAAGATTTT 57.699 40.909 3.95 0.00 0.00 1.82
3337 3480 4.202441 CATCCATTCGAGGGACAAGATTT 58.798 43.478 9.77 0.00 37.23 2.17
3338 3481 3.200825 ACATCCATTCGAGGGACAAGATT 59.799 43.478 9.77 0.00 37.23 2.40
3339 3482 2.774234 ACATCCATTCGAGGGACAAGAT 59.226 45.455 9.77 0.00 37.23 2.40
3340 3483 2.187958 ACATCCATTCGAGGGACAAGA 58.812 47.619 9.77 0.00 37.23 3.02
3341 3484 2.698855 ACATCCATTCGAGGGACAAG 57.301 50.000 9.77 6.38 37.23 3.16
3342 3485 3.967326 AGATACATCCATTCGAGGGACAA 59.033 43.478 9.77 0.50 37.23 3.18
3343 3486 3.576861 AGATACATCCATTCGAGGGACA 58.423 45.455 9.77 0.50 37.23 4.02
3344 3487 4.381079 GCTAGATACATCCATTCGAGGGAC 60.381 50.000 9.77 0.00 37.23 4.46
3345 3488 3.764434 GCTAGATACATCCATTCGAGGGA 59.236 47.826 9.96 9.96 39.14 4.20
3346 3489 3.511540 TGCTAGATACATCCATTCGAGGG 59.488 47.826 0.00 0.00 0.00 4.30
3347 3490 4.489810 GTGCTAGATACATCCATTCGAGG 58.510 47.826 0.00 0.00 0.00 4.63
3348 3491 4.021981 TGGTGCTAGATACATCCATTCGAG 60.022 45.833 0.00 0.00 0.00 4.04
3349 3492 3.895041 TGGTGCTAGATACATCCATTCGA 59.105 43.478 0.00 0.00 0.00 3.71
3350 3493 4.257267 TGGTGCTAGATACATCCATTCG 57.743 45.455 0.00 0.00 0.00 3.34
3351 3494 5.615289 ACTTGGTGCTAGATACATCCATTC 58.385 41.667 0.00 0.00 0.00 2.67
3352 3495 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
3353 3496 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
3354 3497 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3355 3498 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3367 3510 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
3368 3511 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
3369 3512 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
3370 3513 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
3371 3514 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
3372 3515 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
3373 3516 8.662781 TTCAAATGGATGTATCTAGCACTAAC 57.337 34.615 0.00 0.00 0.00 2.34
3374 3517 9.330063 CTTTCAAATGGATGTATCTAGCACTAA 57.670 33.333 0.00 0.00 0.00 2.24
3375 3518 8.704668 TCTTTCAAATGGATGTATCTAGCACTA 58.295 33.333 0.00 0.00 0.00 2.74
3376 3519 7.497249 GTCTTTCAAATGGATGTATCTAGCACT 59.503 37.037 0.00 0.00 0.00 4.40
3377 3520 7.280876 TGTCTTTCAAATGGATGTATCTAGCAC 59.719 37.037 0.00 0.00 0.00 4.40
3378 3521 7.337938 TGTCTTTCAAATGGATGTATCTAGCA 58.662 34.615 0.00 0.00 0.00 3.49
3379 3522 7.792374 TGTCTTTCAAATGGATGTATCTAGC 57.208 36.000 0.00 0.00 0.00 3.42
3380 3523 8.341173 GCTTGTCTTTCAAATGGATGTATCTAG 58.659 37.037 0.00 0.00 35.48 2.43
3381 3524 8.049117 AGCTTGTCTTTCAAATGGATGTATCTA 58.951 33.333 0.00 0.00 35.48 1.98
3382 3525 6.888632 AGCTTGTCTTTCAAATGGATGTATCT 59.111 34.615 0.00 0.00 35.48 1.98
3383 3526 7.093322 AGCTTGTCTTTCAAATGGATGTATC 57.907 36.000 0.00 0.00 35.48 2.24
3384 3527 7.177216 TCAAGCTTGTCTTTCAAATGGATGTAT 59.823 33.333 25.19 0.00 35.48 2.29
3385 3528 6.489700 TCAAGCTTGTCTTTCAAATGGATGTA 59.510 34.615 25.19 0.00 35.48 2.29
3386 3529 5.302568 TCAAGCTTGTCTTTCAAATGGATGT 59.697 36.000 25.19 0.00 35.48 3.06
3387 3530 5.775686 TCAAGCTTGTCTTTCAAATGGATG 58.224 37.500 25.19 0.00 35.48 3.51
3388 3531 5.771666 TCTCAAGCTTGTCTTTCAAATGGAT 59.228 36.000 25.19 0.00 35.48 3.41
3389 3532 5.009010 GTCTCAAGCTTGTCTTTCAAATGGA 59.991 40.000 25.19 1.02 35.48 3.41
3390 3533 5.218139 GTCTCAAGCTTGTCTTTCAAATGG 58.782 41.667 25.19 0.00 35.48 3.16
3391 3534 5.824429 TGTCTCAAGCTTGTCTTTCAAATG 58.176 37.500 25.19 0.00 35.48 2.32
3392 3535 6.096001 ACTTGTCTCAAGCTTGTCTTTCAAAT 59.904 34.615 25.19 11.93 35.48 2.32
3393 3536 5.415701 ACTTGTCTCAAGCTTGTCTTTCAAA 59.584 36.000 25.19 11.13 35.48 2.69
3394 3537 4.943705 ACTTGTCTCAAGCTTGTCTTTCAA 59.056 37.500 25.19 19.91 31.27 2.69
3395 3538 4.517285 ACTTGTCTCAAGCTTGTCTTTCA 58.483 39.130 25.19 15.00 31.27 2.69
3396 3539 5.491635 AACTTGTCTCAAGCTTGTCTTTC 57.508 39.130 25.19 12.90 31.27 2.62
3397 3540 5.904362 AAACTTGTCTCAAGCTTGTCTTT 57.096 34.783 25.19 10.44 31.27 2.52
3398 3541 5.904362 AAAACTTGTCTCAAGCTTGTCTT 57.096 34.783 25.19 6.36 34.78 3.01
3399 3542 5.904362 AAAAACTTGTCTCAAGCTTGTCT 57.096 34.783 25.19 0.72 0.00 3.41
3418 3561 6.713276 TGTATAAGTCCCTCAATCCGAAAAA 58.287 36.000 0.00 0.00 0.00 1.94
3419 3562 6.302535 TGTATAAGTCCCTCAATCCGAAAA 57.697 37.500 0.00 0.00 0.00 2.29
3420 3563 5.943349 TGTATAAGTCCCTCAATCCGAAA 57.057 39.130 0.00 0.00 0.00 3.46
3421 3564 5.943349 TTGTATAAGTCCCTCAATCCGAA 57.057 39.130 0.00 0.00 0.00 4.30
3422 3565 5.943349 TTTGTATAAGTCCCTCAATCCGA 57.057 39.130 0.00 0.00 0.00 4.55
3423 3566 6.288294 TCATTTGTATAAGTCCCTCAATCCG 58.712 40.000 0.00 0.00 0.00 4.18
3424 3567 7.254795 CGTTCATTTGTATAAGTCCCTCAATCC 60.255 40.741 0.00 0.00 0.00 3.01
3425 3568 7.494625 TCGTTCATTTGTATAAGTCCCTCAATC 59.505 37.037 0.00 0.00 0.00 2.67
3426 3569 7.280205 GTCGTTCATTTGTATAAGTCCCTCAAT 59.720 37.037 0.00 0.00 0.00 2.57
3427 3570 6.592607 GTCGTTCATTTGTATAAGTCCCTCAA 59.407 38.462 0.00 0.00 0.00 3.02
3428 3571 6.070995 AGTCGTTCATTTGTATAAGTCCCTCA 60.071 38.462 0.00 0.00 0.00 3.86
3429 3572 6.255887 CAGTCGTTCATTTGTATAAGTCCCTC 59.744 42.308 0.00 0.00 0.00 4.30
3430 3573 6.106673 CAGTCGTTCATTTGTATAAGTCCCT 58.893 40.000 0.00 0.00 0.00 4.20
3431 3574 5.293569 CCAGTCGTTCATTTGTATAAGTCCC 59.706 44.000 0.00 0.00 0.00 4.46
3432 3575 6.103997 TCCAGTCGTTCATTTGTATAAGTCC 58.896 40.000 0.00 0.00 0.00 3.85
3433 3576 6.812160 ACTCCAGTCGTTCATTTGTATAAGTC 59.188 38.462 0.00 0.00 0.00 3.01
3441 3584 4.750098 ACTTGTACTCCAGTCGTTCATTTG 59.250 41.667 0.00 0.00 0.00 2.32
3460 3603 9.316730 CAAATCATGGGAATTAATTGGTACTTG 57.683 33.333 5.17 2.42 0.00 3.16
3532 3675 5.008118 GCCCACAATCTAATTCAAGCTAGTC 59.992 44.000 0.00 0.00 0.00 2.59
3550 3693 3.389983 GTCCTATGTAGTATTGGCCCACA 59.610 47.826 0.00 0.00 0.00 4.17
3559 3702 4.557705 ACCAAGGCTGTCCTATGTAGTAT 58.442 43.478 0.00 0.00 43.40 2.12
3661 3804 2.076100 TGTTGTGCAGCCTTTATCTCG 58.924 47.619 0.00 0.00 0.00 4.04
3710 3853 6.192970 AGCACAGCTAATATCTTGGGTATT 57.807 37.500 0.00 0.00 36.99 1.89
3773 3916 6.408869 TGACAGATAAATCTTCATGCACTCA 58.591 36.000 0.00 0.00 34.22 3.41
3821 3969 5.360714 AGAACAATCAACTGCAAGAGGAAAA 59.639 36.000 0.00 0.00 37.43 2.29
3911 4060 8.406297 GTTAAACCCATAGTGGAAGAAATGATC 58.594 37.037 0.00 0.00 40.96 2.92
3925 4074 4.974368 TGCCATTTCGTTAAACCCATAG 57.026 40.909 0.00 0.00 0.00 2.23
3927 4076 4.382577 GGAATGCCATTTCGTTAAACCCAT 60.383 41.667 0.00 0.00 0.00 4.00
3957 4106 5.161358 TGTTGTCGTAGTTCTCATCATCAC 58.839 41.667 0.00 0.00 0.00 3.06
3983 4132 9.023967 GCGCAATCTTGTTGAATTTTCTAATAT 57.976 29.630 0.30 0.00 0.00 1.28
3984 4133 8.243426 AGCGCAATCTTGTTGAATTTTCTAATA 58.757 29.630 11.47 0.00 0.00 0.98
3985 4134 7.092716 AGCGCAATCTTGTTGAATTTTCTAAT 58.907 30.769 11.47 0.00 0.00 1.73
3986 4135 6.446318 AGCGCAATCTTGTTGAATTTTCTAA 58.554 32.000 11.47 0.00 0.00 2.10
3987 4136 6.012658 AGCGCAATCTTGTTGAATTTTCTA 57.987 33.333 11.47 0.00 0.00 2.10
3988 4137 4.874970 AGCGCAATCTTGTTGAATTTTCT 58.125 34.783 11.47 0.00 0.00 2.52
3989 4138 5.060940 GGTAGCGCAATCTTGTTGAATTTTC 59.939 40.000 11.47 0.00 0.00 2.29
3990 4139 4.923281 GGTAGCGCAATCTTGTTGAATTTT 59.077 37.500 11.47 0.00 0.00 1.82
3991 4140 4.485163 GGTAGCGCAATCTTGTTGAATTT 58.515 39.130 11.47 0.00 0.00 1.82
3992 4141 3.426159 CGGTAGCGCAATCTTGTTGAATT 60.426 43.478 11.47 0.00 0.00 2.17
3993 4142 2.095853 CGGTAGCGCAATCTTGTTGAAT 59.904 45.455 11.47 0.00 0.00 2.57
3994 4143 1.463056 CGGTAGCGCAATCTTGTTGAA 59.537 47.619 11.47 0.00 0.00 2.69
3995 4144 1.075542 CGGTAGCGCAATCTTGTTGA 58.924 50.000 11.47 0.00 0.00 3.18
3996 4145 1.061131 CTCGGTAGCGCAATCTTGTTG 59.939 52.381 11.47 0.00 0.00 3.33
3997 4146 1.067142 TCTCGGTAGCGCAATCTTGTT 60.067 47.619 11.47 0.00 0.00 2.83
3998 4147 0.530744 TCTCGGTAGCGCAATCTTGT 59.469 50.000 11.47 0.00 0.00 3.16
3999 4148 1.858091 ATCTCGGTAGCGCAATCTTG 58.142 50.000 11.47 0.00 0.00 3.02
4000 4149 2.474816 GAATCTCGGTAGCGCAATCTT 58.525 47.619 11.47 0.00 0.00 2.40
4001 4150 1.600663 CGAATCTCGGTAGCGCAATCT 60.601 52.381 11.47 0.00 36.00 2.40
4031 4180 6.747125 ACAAACATGCTCATACACAAATTGA 58.253 32.000 0.00 0.00 0.00 2.57
4035 4184 6.634837 CGTAAACAAACATGCTCATACACAAA 59.365 34.615 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.