Multiple sequence alignment - TraesCS1B01G363500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G363500 chr1B 100.000 4102 0 0 1 4102 592175047 592170946 0.000000e+00 7576.0
1 TraesCS1B01G363500 chr1B 88.430 121 13 1 415 534 652244736 652244616 1.190000e-30 145.0
2 TraesCS1B01G363500 chr1D 94.598 1518 62 9 414 1915 437002300 437000787 0.000000e+00 2331.0
3 TraesCS1B01G363500 chr1D 94.174 1253 58 12 2038 3281 437000665 436999419 0.000000e+00 1895.0
4 TraesCS1B01G363500 chr1D 95.248 463 21 1 3284 3746 436999357 436998896 0.000000e+00 732.0
5 TraesCS1B01G363500 chr1D 92.405 79 5 1 1959 2037 437000788 437000711 1.210000e-20 111.0
6 TraesCS1B01G363500 chr1A 90.962 1372 75 25 596 1919 534052854 534051484 0.000000e+00 1801.0
7 TraesCS1B01G363500 chr1A 95.167 1076 48 2 2202 3277 534051261 534050190 0.000000e+00 1696.0
8 TraesCS1B01G363500 chr1A 83.973 443 46 8 3661 4102 534048192 534047774 6.390000e-108 401.0
9 TraesCS1B01G363500 chr1A 86.007 293 40 1 3373 3665 534049861 534049570 3.080000e-81 313.0
10 TraesCS1B01G363500 chr1A 86.220 254 29 6 74 325 562888747 562888996 1.880000e-68 270.0
11 TraesCS1B01G363500 chr3B 84.141 908 132 7 2205 3104 828421026 828420123 0.000000e+00 869.0
12 TraesCS1B01G363500 chr3B 83.882 912 133 11 2205 3104 828764317 828765226 0.000000e+00 857.0
13 TraesCS1B01G363500 chr3B 90.154 325 22 4 1 325 550632491 550632805 8.200000e-112 414.0
14 TraesCS1B01G363500 chr3B 82.195 483 78 5 1062 1543 828421992 828421517 3.820000e-110 409.0
15 TraesCS1B01G363500 chr3B 88.415 328 27 7 3 325 742714606 742714927 6.430000e-103 385.0
16 TraesCS1B01G363500 chr3B 88.379 327 26 9 3 325 742552628 742552946 2.310000e-102 383.0
17 TraesCS1B01G363500 chr3B 84.475 219 28 5 1665 1881 828421373 828421159 1.160000e-50 211.0
18 TraesCS1B01G363500 chr3B 84.793 217 26 6 1668 1881 828763979 828764191 1.160000e-50 211.0
19 TraesCS1B01G363500 chr3D 83.571 913 131 13 2205 3104 610805036 610804130 0.000000e+00 837.0
20 TraesCS1B01G363500 chr3D 79.393 791 144 13 1088 1871 610805948 610805170 1.300000e-149 540.0
21 TraesCS1B01G363500 chr3A 82.842 915 141 10 2205 3104 745513533 745512620 0.000000e+00 806.0
22 TraesCS1B01G363500 chr3A 77.616 822 151 23 1062 1871 745517921 745517121 6.210000e-128 468.0
23 TraesCS1B01G363500 chr2B 93.189 323 21 1 2 324 249668430 249668751 1.330000e-129 473.0
24 TraesCS1B01G363500 chr2B 89.256 121 13 0 414 534 520899085 520899205 7.100000e-33 152.0
25 TraesCS1B01G363500 chr2B 88.800 125 13 1 411 534 732113842 732113966 7.100000e-33 152.0
26 TraesCS1B01G363500 chr2B 88.430 121 14 0 414 534 71226168 71226288 3.300000e-31 147.0
27 TraesCS1B01G363500 chr2B 83.333 84 11 1 328 411 71226047 71226127 1.580000e-09 75.0
28 TraesCS1B01G363500 chr2D 76.596 846 172 17 2204 3030 174324527 174325365 3.760000e-120 442.0
29 TraesCS1B01G363500 chr2D 84.524 84 13 0 328 411 19095346 19095429 2.630000e-12 84.2
30 TraesCS1B01G363500 chr2D 84.524 84 12 1 328 411 625113750 625113832 9.450000e-12 82.4
31 TraesCS1B01G363500 chr2A 76.478 846 174 17 2204 3030 174027289 174028128 1.750000e-118 436.0
32 TraesCS1B01G363500 chr2A 76.699 824 167 16 2208 3011 174245677 174246495 6.300000e-118 435.0
33 TraesCS1B01G363500 chr2A 89.256 121 13 0 414 534 562598133 562598013 7.100000e-33 152.0
34 TraesCS1B01G363500 chr4B 88.991 327 29 6 1 325 570768030 570767709 8.260000e-107 398.0
35 TraesCS1B01G363500 chr4B 88.095 126 13 1 411 534 404802419 404802544 9.190000e-32 148.0
36 TraesCS1B01G363500 chr4A 87.906 339 36 5 1 334 604943557 604943219 1.070000e-105 394.0
37 TraesCS1B01G363500 chr7B 84.858 317 40 7 1 312 732511039 732510726 3.080000e-81 313.0
38 TraesCS1B01G363500 chr7B 89.600 125 12 1 411 534 64007538 64007662 1.530000e-34 158.0
39 TraesCS1B01G363500 chr7B 86.747 83 10 1 330 411 64007418 64007500 1.570000e-14 91.6
40 TraesCS1B01G363500 chr5A 89.868 227 17 4 100 325 589355161 589354940 1.870000e-73 287.0
41 TraesCS1B01G363500 chr6D 82.143 252 16 16 1 244 49776028 49775798 5.410000e-44 189.0
42 TraesCS1B01G363500 chr5D 91.525 118 9 1 418 534 454925536 454925419 1.180000e-35 161.0
43 TraesCS1B01G363500 chr4D 86.905 84 11 0 328 411 77177480 77177563 1.210000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G363500 chr1B 592170946 592175047 4101 True 7576.000000 7576 100.000000 1 4102 1 chr1B.!!$R1 4101
1 TraesCS1B01G363500 chr1D 436998896 437002300 3404 True 1267.250000 2331 94.106250 414 3746 4 chr1D.!!$R1 3332
2 TraesCS1B01G363500 chr1A 534047774 534052854 5080 True 1052.750000 1801 89.027250 596 4102 4 chr1A.!!$R1 3506
3 TraesCS1B01G363500 chr3B 828763979 828765226 1247 False 534.000000 857 84.337500 1668 3104 2 chr3B.!!$F4 1436
4 TraesCS1B01G363500 chr3B 828420123 828421992 1869 True 496.333333 869 83.603667 1062 3104 3 chr3B.!!$R1 2042
5 TraesCS1B01G363500 chr3D 610804130 610805948 1818 True 688.500000 837 81.482000 1088 3104 2 chr3D.!!$R1 2016
6 TraesCS1B01G363500 chr3A 745512620 745517921 5301 True 637.000000 806 80.229000 1062 3104 2 chr3A.!!$R1 2042
7 TraesCS1B01G363500 chr2D 174324527 174325365 838 False 442.000000 442 76.596000 2204 3030 1 chr2D.!!$F2 826
8 TraesCS1B01G363500 chr2A 174027289 174028128 839 False 436.000000 436 76.478000 2204 3030 1 chr2A.!!$F1 826
9 TraesCS1B01G363500 chr2A 174245677 174246495 818 False 435.000000 435 76.699000 2208 3011 1 chr2A.!!$F2 803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 500 0.030092 TCAATCCCTAGACCCCCTGG 60.030 60.0 0.00 0.0 37.8 4.45 F
980 1004 0.033405 ACCCACCGCTAGCTTCTCTA 60.033 55.0 13.93 0.0 0.0 2.43 F
1637 1687 0.674269 TCATGTTCCCGGCGTTTACC 60.674 55.0 6.01 0.0 0.0 2.85 F
2438 6073 0.183492 TGGAGGAGTGCAAGCTGTTT 59.817 50.0 0.00 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 5812 1.619654 TGGCATGCCCATTACATAGC 58.380 50.000 33.44 4.70 39.18 2.97 R
2190 5825 2.285083 CCTGAAAAATGGCATGGCATG 58.715 47.619 32.77 22.99 0.00 4.06 R
3015 6687 2.224185 GCGGTGTATGGGTGTATGATGA 60.224 50.000 0.00 0.00 0.00 2.92 R
4004 9292 0.309612 GAGGAGATCTCGAACTCGGC 59.690 60.000 16.46 0.11 40.29 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.854979 TGACACAACAAAGACTCAATAATTTG 57.145 30.769 0.00 0.00 38.35 2.32
28 29 7.920151 TGACACAACAAAGACTCAATAATTTGG 59.080 33.333 0.00 0.00 37.04 3.28
29 30 6.701400 ACACAACAAAGACTCAATAATTTGGC 59.299 34.615 0.00 0.00 37.04 4.52
30 31 6.146021 CACAACAAAGACTCAATAATTTGGCC 59.854 38.462 0.00 0.00 37.04 5.36
31 32 5.059404 ACAAAGACTCAATAATTTGGCCG 57.941 39.130 0.00 0.00 37.04 6.13
32 33 3.782889 AAGACTCAATAATTTGGCCGC 57.217 42.857 0.00 0.00 33.44 6.53
33 34 2.722094 AGACTCAATAATTTGGCCGCA 58.278 42.857 0.00 0.00 33.44 5.69
34 35 3.088532 AGACTCAATAATTTGGCCGCAA 58.911 40.909 0.00 0.00 33.44 4.85
35 36 3.701040 AGACTCAATAATTTGGCCGCAAT 59.299 39.130 0.00 0.00 33.44 3.56
36 37 4.887071 AGACTCAATAATTTGGCCGCAATA 59.113 37.500 0.00 0.00 33.44 1.90
37 38 5.009010 AGACTCAATAATTTGGCCGCAATAG 59.991 40.000 0.00 0.00 33.44 1.73
38 39 3.976169 TCAATAATTTGGCCGCAATAGC 58.024 40.909 0.00 0.00 33.44 2.97
39 40 3.382865 TCAATAATTTGGCCGCAATAGCA 59.617 39.130 0.00 0.00 35.41 3.49
40 41 2.861462 TAATTTGGCCGCAATAGCAC 57.139 45.000 0.00 0.00 42.27 4.40
41 42 1.185315 AATTTGGCCGCAATAGCACT 58.815 45.000 0.00 0.00 42.27 4.40
42 43 1.185315 ATTTGGCCGCAATAGCACTT 58.815 45.000 0.00 0.00 42.27 3.16
43 44 0.243365 TTTGGCCGCAATAGCACTTG 59.757 50.000 0.00 0.00 42.27 3.16
44 45 0.607762 TTGGCCGCAATAGCACTTGA 60.608 50.000 0.00 0.00 42.27 3.02
45 46 1.026182 TGGCCGCAATAGCACTTGAG 61.026 55.000 0.00 0.00 42.27 3.02
46 47 0.744414 GGCCGCAATAGCACTTGAGA 60.744 55.000 2.74 0.00 42.27 3.27
47 48 0.654683 GCCGCAATAGCACTTGAGAG 59.345 55.000 2.74 0.00 42.27 3.20
48 49 2.009042 GCCGCAATAGCACTTGAGAGT 61.009 52.381 2.74 0.00 42.27 3.24
58 59 2.802787 ACTTGAGAGTGAAGTGTCGG 57.197 50.000 0.00 0.00 33.99 4.79
59 60 2.307768 ACTTGAGAGTGAAGTGTCGGA 58.692 47.619 0.00 0.00 33.99 4.55
60 61 2.294791 ACTTGAGAGTGAAGTGTCGGAG 59.705 50.000 0.00 0.00 33.99 4.63
61 62 2.271944 TGAGAGTGAAGTGTCGGAGA 57.728 50.000 0.00 0.00 0.00 3.71
62 63 2.583143 TGAGAGTGAAGTGTCGGAGAA 58.417 47.619 0.00 0.00 39.69 2.87
63 64 2.554462 TGAGAGTGAAGTGTCGGAGAAG 59.446 50.000 0.00 0.00 39.69 2.85
64 65 2.814919 GAGAGTGAAGTGTCGGAGAAGA 59.185 50.000 0.00 0.00 39.69 2.87
65 66 3.426615 AGAGTGAAGTGTCGGAGAAGAT 58.573 45.455 0.00 0.00 39.69 2.40
66 67 3.829601 AGAGTGAAGTGTCGGAGAAGATT 59.170 43.478 0.00 0.00 39.69 2.40
67 68 3.919216 AGTGAAGTGTCGGAGAAGATTG 58.081 45.455 0.00 0.00 39.69 2.67
68 69 3.574396 AGTGAAGTGTCGGAGAAGATTGA 59.426 43.478 0.00 0.00 39.69 2.57
69 70 4.221703 AGTGAAGTGTCGGAGAAGATTGAT 59.778 41.667 0.00 0.00 39.69 2.57
70 71 4.932200 GTGAAGTGTCGGAGAAGATTGATT 59.068 41.667 0.00 0.00 39.69 2.57
71 72 4.931601 TGAAGTGTCGGAGAAGATTGATTG 59.068 41.667 0.00 0.00 39.69 2.67
72 73 3.265791 AGTGTCGGAGAAGATTGATTGC 58.734 45.455 0.00 0.00 39.69 3.56
73 74 3.002791 GTGTCGGAGAAGATTGATTGCA 58.997 45.455 0.00 0.00 39.69 4.08
74 75 3.436704 GTGTCGGAGAAGATTGATTGCAA 59.563 43.478 0.00 0.00 39.69 4.08
75 76 3.686241 TGTCGGAGAAGATTGATTGCAAG 59.314 43.478 4.94 0.00 39.69 4.01
76 77 3.064545 GTCGGAGAAGATTGATTGCAAGG 59.935 47.826 4.94 0.00 39.69 3.61
77 78 3.055167 TCGGAGAAGATTGATTGCAAGGA 60.055 43.478 4.94 0.00 37.45 3.36
78 79 3.881688 CGGAGAAGATTGATTGCAAGGAT 59.118 43.478 4.94 0.00 37.45 3.24
79 80 5.059161 CGGAGAAGATTGATTGCAAGGATA 58.941 41.667 4.94 0.00 37.45 2.59
80 81 5.704515 CGGAGAAGATTGATTGCAAGGATAT 59.295 40.000 4.94 0.00 37.45 1.63
81 82 6.206243 CGGAGAAGATTGATTGCAAGGATATT 59.794 38.462 4.94 2.32 37.45 1.28
82 83 7.388776 CGGAGAAGATTGATTGCAAGGATATTA 59.611 37.037 4.94 0.00 37.45 0.98
83 84 9.240734 GGAGAAGATTGATTGCAAGGATATTAT 57.759 33.333 4.94 0.00 37.45 1.28
85 86 8.944029 AGAAGATTGATTGCAAGGATATTATCG 58.056 33.333 4.94 0.00 37.45 2.92
86 87 8.853077 AAGATTGATTGCAAGGATATTATCGA 57.147 30.769 4.94 0.00 37.45 3.59
87 88 8.853077 AGATTGATTGCAAGGATATTATCGAA 57.147 30.769 4.94 0.00 37.45 3.71
88 89 8.944029 AGATTGATTGCAAGGATATTATCGAAG 58.056 33.333 4.94 0.00 37.45 3.79
89 90 8.853077 ATTGATTGCAAGGATATTATCGAAGA 57.147 30.769 4.94 0.00 38.20 2.87
90 91 8.853077 TTGATTGCAAGGATATTATCGAAGAT 57.147 30.769 4.94 0.00 45.12 2.40
91 92 8.853077 TGATTGCAAGGATATTATCGAAGATT 57.147 30.769 4.94 0.00 45.12 2.40
92 93 9.288576 TGATTGCAAGGATATTATCGAAGATTT 57.711 29.630 4.94 0.00 45.12 2.17
93 94 9.766277 GATTGCAAGGATATTATCGAAGATTTC 57.234 33.333 4.94 0.00 45.12 2.17
94 95 8.675705 TTGCAAGGATATTATCGAAGATTTCA 57.324 30.769 0.00 0.00 45.12 2.69
95 96 8.853077 TGCAAGGATATTATCGAAGATTTCAT 57.147 30.769 0.00 0.00 45.12 2.57
96 97 9.288576 TGCAAGGATATTATCGAAGATTTCATT 57.711 29.630 0.00 0.00 45.12 2.57
143 144 9.498307 GAGTATGTTCAAATAAATAACAACCGG 57.502 33.333 0.00 0.00 36.75 5.28
144 145 8.463607 AGTATGTTCAAATAAATAACAACCGGG 58.536 33.333 6.32 0.00 36.75 5.73
145 146 6.896021 TGTTCAAATAAATAACAACCGGGA 57.104 33.333 6.32 0.00 30.54 5.14
146 147 6.915349 TGTTCAAATAAATAACAACCGGGAG 58.085 36.000 6.32 0.00 30.54 4.30
147 148 6.490721 TGTTCAAATAAATAACAACCGGGAGT 59.509 34.615 6.32 0.00 30.54 3.85
148 149 7.014422 TGTTCAAATAAATAACAACCGGGAGTT 59.986 33.333 16.45 16.45 40.16 3.01
159 160 4.891992 AACCGGGAGTTGGATAGATATG 57.108 45.455 6.32 0.00 37.29 1.78
160 161 4.127918 ACCGGGAGTTGGATAGATATGA 57.872 45.455 6.32 0.00 0.00 2.15
161 162 3.833070 ACCGGGAGTTGGATAGATATGAC 59.167 47.826 6.32 0.00 0.00 3.06
162 163 4.090090 CCGGGAGTTGGATAGATATGACT 58.910 47.826 0.00 0.00 0.00 3.41
163 164 4.528596 CCGGGAGTTGGATAGATATGACTT 59.471 45.833 0.00 0.00 0.00 3.01
164 165 5.012148 CCGGGAGTTGGATAGATATGACTTT 59.988 44.000 0.00 0.00 0.00 2.66
165 166 6.464465 CCGGGAGTTGGATAGATATGACTTTT 60.464 42.308 0.00 0.00 0.00 2.27
166 167 6.992715 CGGGAGTTGGATAGATATGACTTTTT 59.007 38.462 0.00 0.00 0.00 1.94
281 282 3.756082 TTTTTGTGAGATAGGGCCCAT 57.244 42.857 27.56 15.81 0.00 4.00
282 283 3.756082 TTTTGTGAGATAGGGCCCATT 57.244 42.857 27.56 11.05 0.00 3.16
283 284 3.756082 TTTGTGAGATAGGGCCCATTT 57.244 42.857 27.56 10.81 0.00 2.32
284 285 3.756082 TTGTGAGATAGGGCCCATTTT 57.244 42.857 27.56 5.28 0.00 1.82
285 286 3.756082 TGTGAGATAGGGCCCATTTTT 57.244 42.857 27.56 4.81 0.00 1.94
301 302 2.785713 TTTTTAGTTTCGCACAGGGC 57.214 45.000 0.00 0.00 39.90 5.19
302 303 0.955905 TTTTAGTTTCGCACAGGGCC 59.044 50.000 0.00 0.00 40.31 5.80
303 304 0.891904 TTTAGTTTCGCACAGGGCCC 60.892 55.000 16.46 16.46 40.31 5.80
304 305 2.757980 TTAGTTTCGCACAGGGCCCC 62.758 60.000 21.43 0.78 40.31 5.80
310 311 4.759205 GCACAGGGCCCCCGATTT 62.759 66.667 21.43 0.00 41.95 2.17
311 312 2.037208 CACAGGGCCCCCGATTTT 59.963 61.111 21.43 0.00 41.95 1.82
312 313 2.037208 ACAGGGCCCCCGATTTTG 59.963 61.111 21.43 11.23 41.95 2.44
313 314 3.460868 CAGGGCCCCCGATTTTGC 61.461 66.667 21.43 0.00 41.95 3.68
314 315 4.777854 AGGGCCCCCGATTTTGCC 62.778 66.667 21.43 0.00 43.26 4.52
337 338 4.772687 GGCCCCGGGAAGAACGAC 62.773 72.222 26.32 0.74 0.00 4.34
338 339 3.703127 GCCCCGGGAAGAACGACT 61.703 66.667 26.32 0.00 0.00 4.18
339 340 2.577593 CCCCGGGAAGAACGACTC 59.422 66.667 26.32 0.00 0.00 3.36
340 341 1.982938 CCCCGGGAAGAACGACTCT 60.983 63.158 26.32 0.00 35.13 3.24
342 343 0.320697 CCCGGGAAGAACGACTCTTT 59.679 55.000 18.48 0.00 44.82 2.52
343 344 1.270678 CCCGGGAAGAACGACTCTTTT 60.271 52.381 18.48 0.00 44.82 2.27
344 345 2.028748 CCCGGGAAGAACGACTCTTTTA 60.029 50.000 18.48 0.00 44.82 1.52
345 346 3.369157 CCCGGGAAGAACGACTCTTTTAT 60.369 47.826 18.48 0.00 44.82 1.40
346 347 3.864003 CCGGGAAGAACGACTCTTTTATC 59.136 47.826 0.00 0.00 44.82 1.75
347 348 3.864003 CGGGAAGAACGACTCTTTTATCC 59.136 47.826 6.09 3.57 44.82 2.59
348 349 4.381718 CGGGAAGAACGACTCTTTTATCCT 60.382 45.833 6.09 0.00 44.82 3.24
349 350 5.110598 GGGAAGAACGACTCTTTTATCCTC 58.889 45.833 6.09 0.00 44.82 3.71
350 351 4.799428 GGAAGAACGACTCTTTTATCCTCG 59.201 45.833 6.09 0.00 44.82 4.63
351 352 5.388408 AAGAACGACTCTTTTATCCTCGT 57.612 39.130 0.00 0.00 41.97 4.18
352 353 4.734917 AGAACGACTCTTTTATCCTCGTG 58.265 43.478 0.00 0.00 37.63 4.35
353 354 4.458295 AGAACGACTCTTTTATCCTCGTGA 59.542 41.667 0.00 0.00 37.63 4.35
354 355 4.778534 ACGACTCTTTTATCCTCGTGAA 57.221 40.909 0.00 0.00 36.28 3.18
355 356 4.483311 ACGACTCTTTTATCCTCGTGAAC 58.517 43.478 0.00 0.00 36.28 3.18
356 357 3.858238 CGACTCTTTTATCCTCGTGAACC 59.142 47.826 0.00 0.00 0.00 3.62
357 358 4.182339 GACTCTTTTATCCTCGTGAACCC 58.818 47.826 0.00 0.00 0.00 4.11
358 359 3.581332 ACTCTTTTATCCTCGTGAACCCA 59.419 43.478 0.00 0.00 0.00 4.51
359 360 4.225267 ACTCTTTTATCCTCGTGAACCCAT 59.775 41.667 0.00 0.00 0.00 4.00
360 361 5.174037 TCTTTTATCCTCGTGAACCCATT 57.826 39.130 0.00 0.00 0.00 3.16
361 362 5.183228 TCTTTTATCCTCGTGAACCCATTC 58.817 41.667 0.00 0.00 35.18 2.67
362 363 4.561500 TTTATCCTCGTGAACCCATTCA 57.438 40.909 0.00 0.00 42.73 2.57
363 364 4.561500 TTATCCTCGTGAACCCATTCAA 57.438 40.909 0.00 0.00 46.40 2.69
364 365 2.472695 TCCTCGTGAACCCATTCAAG 57.527 50.000 0.00 0.00 46.40 3.02
365 366 1.974957 TCCTCGTGAACCCATTCAAGA 59.025 47.619 5.71 5.71 46.40 3.02
381 382 7.024340 CATTCAAGAATGGTGAATCAGTAGG 57.976 40.000 13.64 0.00 42.47 3.18
382 383 5.762179 TCAAGAATGGTGAATCAGTAGGT 57.238 39.130 0.00 0.00 0.00 3.08
383 384 5.734720 TCAAGAATGGTGAATCAGTAGGTC 58.265 41.667 0.00 0.00 0.00 3.85
384 385 5.485353 TCAAGAATGGTGAATCAGTAGGTCT 59.515 40.000 0.00 0.00 0.00 3.85
385 386 6.013379 TCAAGAATGGTGAATCAGTAGGTCTT 60.013 38.462 0.00 0.00 0.00 3.01
386 387 7.180229 TCAAGAATGGTGAATCAGTAGGTCTTA 59.820 37.037 0.00 0.00 0.00 2.10
387 388 6.879400 AGAATGGTGAATCAGTAGGTCTTAC 58.121 40.000 0.00 0.00 0.00 2.34
388 389 4.713824 TGGTGAATCAGTAGGTCTTACG 57.286 45.455 0.00 0.00 37.35 3.18
389 390 3.446161 TGGTGAATCAGTAGGTCTTACGG 59.554 47.826 0.00 0.00 37.35 4.02
390 391 3.446516 GGTGAATCAGTAGGTCTTACGGT 59.553 47.826 0.00 0.00 37.35 4.83
391 392 4.081807 GGTGAATCAGTAGGTCTTACGGTT 60.082 45.833 0.00 0.00 37.35 4.44
392 393 5.126061 GGTGAATCAGTAGGTCTTACGGTTA 59.874 44.000 0.00 0.00 37.35 2.85
393 394 6.032717 GTGAATCAGTAGGTCTTACGGTTAC 58.967 44.000 0.00 0.00 37.35 2.50
394 395 5.126061 TGAATCAGTAGGTCTTACGGTTACC 59.874 44.000 0.00 0.00 37.35 2.85
395 396 4.307032 TCAGTAGGTCTTACGGTTACCT 57.693 45.455 12.35 12.35 45.53 3.08
396 397 4.265073 TCAGTAGGTCTTACGGTTACCTC 58.735 47.826 11.39 5.91 42.65 3.85
397 398 4.012374 CAGTAGGTCTTACGGTTACCTCA 58.988 47.826 11.39 0.00 42.65 3.86
398 399 4.096081 CAGTAGGTCTTACGGTTACCTCAG 59.904 50.000 11.39 0.00 42.65 3.35
399 400 1.823610 AGGTCTTACGGTTACCTCAGC 59.176 52.381 0.00 0.00 39.46 4.26
400 401 1.134877 GGTCTTACGGTTACCTCAGCC 60.135 57.143 0.00 0.00 0.00 4.85
401 402 1.547372 GTCTTACGGTTACCTCAGCCA 59.453 52.381 0.00 0.00 0.00 4.75
402 403 2.028748 GTCTTACGGTTACCTCAGCCAA 60.029 50.000 0.00 0.00 0.00 4.52
403 404 2.633967 TCTTACGGTTACCTCAGCCAAA 59.366 45.455 0.00 0.00 0.00 3.28
404 405 2.754946 TACGGTTACCTCAGCCAAAG 57.245 50.000 0.00 0.00 0.00 2.77
405 406 0.763035 ACGGTTACCTCAGCCAAAGT 59.237 50.000 0.00 0.00 0.00 2.66
406 407 1.142262 ACGGTTACCTCAGCCAAAGTT 59.858 47.619 0.00 0.00 0.00 2.66
407 408 2.227194 CGGTTACCTCAGCCAAAGTTT 58.773 47.619 0.00 0.00 0.00 2.66
408 409 2.621526 CGGTTACCTCAGCCAAAGTTTT 59.378 45.455 0.00 0.00 0.00 2.43
409 410 3.816523 CGGTTACCTCAGCCAAAGTTTTA 59.183 43.478 0.00 0.00 0.00 1.52
410 411 4.083484 CGGTTACCTCAGCCAAAGTTTTAG 60.083 45.833 0.00 0.00 0.00 1.85
411 412 4.321008 GGTTACCTCAGCCAAAGTTTTAGC 60.321 45.833 0.00 0.00 0.00 3.09
412 413 1.880027 ACCTCAGCCAAAGTTTTAGCG 59.120 47.619 2.53 0.00 30.00 4.26
418 419 1.264826 GCCAAAGTTTTAGCGTTCCGA 59.735 47.619 0.00 0.00 0.00 4.55
422 423 3.717350 AAGTTTTAGCGTTCCGATTCG 57.283 42.857 0.00 0.00 0.00 3.34
440 441 8.775527 TCCGATTCGTGAGATAATCTATATAGC 58.224 37.037 4.75 0.00 41.60 2.97
456 457 2.332063 TAGCCATTTACTCAGCAGGC 57.668 50.000 0.00 0.00 42.31 4.85
462 463 4.498682 GCCATTTACTCAGCAGGCATTTAG 60.499 45.833 0.00 0.00 41.63 1.85
472 473 6.855836 TCAGCAGGCATTTAGTTTTAATCTG 58.144 36.000 0.00 0.00 0.00 2.90
486 487 6.887002 AGTTTTAATCTGGAGGTTCTCAATCC 59.113 38.462 0.00 0.00 31.08 3.01
498 499 1.062121 TCTCAATCCCTAGACCCCCTG 60.062 57.143 0.00 0.00 0.00 4.45
499 500 0.030092 TCAATCCCTAGACCCCCTGG 60.030 60.000 0.00 0.00 37.80 4.45
523 524 6.017357 GGTCTTTGGGTCGACAAATAATATCC 60.017 42.308 18.91 6.32 39.39 2.59
525 526 5.375283 TTGGGTCGACAAATAATATCCCA 57.625 39.130 18.91 8.49 41.35 4.37
530 531 6.371825 GGGTCGACAAATAATATCCCATCTTC 59.628 42.308 18.91 0.00 34.39 2.87
555 556 2.851821 TCTTTGGGTCCATGATCCATCA 59.148 45.455 0.00 0.00 42.95 3.07
557 558 3.513909 TTGGGTCCATGATCCATCATC 57.486 47.619 0.00 0.00 42.95 2.92
558 559 2.709966 TGGGTCCATGATCCATCATCT 58.290 47.619 0.00 0.00 45.23 2.90
559 560 2.374170 TGGGTCCATGATCCATCATCTG 59.626 50.000 0.00 0.00 45.23 2.90
560 561 2.641321 GGGTCCATGATCCATCATCTGA 59.359 50.000 0.00 0.00 45.23 3.27
561 562 3.266254 GGGTCCATGATCCATCATCTGAT 59.734 47.826 0.00 0.00 45.23 2.90
572 573 4.053983 CCATCATCTGATTGTTCGACGAT 58.946 43.478 0.00 0.00 31.21 3.73
716 718 4.570874 GGGGCCATCCTCCTTCGC 62.571 72.222 4.39 0.00 35.33 4.70
731 733 4.874199 TCCTTCGCCCCCTTTAATTTAAT 58.126 39.130 0.00 0.00 0.00 1.40
843 845 3.047280 GCGCACCATCAACCGTGA 61.047 61.111 0.30 0.00 38.41 4.35
844 846 2.860293 CGCACCATCAACCGTGAC 59.140 61.111 0.00 0.00 36.31 3.67
890 892 1.694150 CTTGAGACCTCACTGTCCCAA 59.306 52.381 0.00 0.00 39.66 4.12
894 896 1.625818 AGACCTCACTGTCCCAATGAC 59.374 52.381 0.00 0.00 44.72 3.06
944 946 4.927267 AAACATCACCAATCCAGTCCTA 57.073 40.909 0.00 0.00 0.00 2.94
968 992 0.396811 ACCTTTCTTCTCACCCACCG 59.603 55.000 0.00 0.00 0.00 4.94
980 1004 0.033405 ACCCACCGCTAGCTTCTCTA 60.033 55.000 13.93 0.00 0.00 2.43
1041 1065 2.262915 GGTCCACCTGCACTCTCG 59.737 66.667 0.00 0.00 0.00 4.04
1306 1330 1.204704 CGTTCCTCTACAGCACCATCA 59.795 52.381 0.00 0.00 0.00 3.07
1546 1570 2.678190 GCCGAGAAGCTCAAGGTACATT 60.678 50.000 0.00 0.00 0.00 2.71
1552 1576 1.352352 AGCTCAAGGTACATTGCCAGT 59.648 47.619 15.24 0.00 0.00 4.00
1601 1647 3.013327 ATGGCTGGCCTGCTGAGA 61.013 61.111 30.65 14.82 36.94 3.27
1625 1675 2.921754 GCTTGATTTGCAGCTCATGTTC 59.078 45.455 12.19 0.00 0.00 3.18
1637 1687 0.674269 TCATGTTCCCGGCGTTTACC 60.674 55.000 6.01 0.00 0.00 2.85
1919 1990 6.433716 AGACTGGTAGTACTAACTGAAGTTCC 59.566 42.308 26.24 11.49 39.31 3.62
1921 1992 6.208994 ACTGGTAGTACTAACTGAAGTTCCTG 59.791 42.308 26.24 15.39 39.31 3.86
1922 1993 5.479375 TGGTAGTACTAACTGAAGTTCCTGG 59.521 44.000 18.57 0.00 39.31 4.45
1923 1994 4.538746 AGTACTAACTGAAGTTCCTGGC 57.461 45.455 0.00 0.00 39.31 4.85
1924 1995 4.161102 AGTACTAACTGAAGTTCCTGGCT 58.839 43.478 0.00 0.00 39.31 4.75
1925 1996 4.593634 AGTACTAACTGAAGTTCCTGGCTT 59.406 41.667 0.00 0.00 39.31 4.35
1926 1997 3.744660 ACTAACTGAAGTTCCTGGCTTG 58.255 45.455 0.00 0.00 39.31 4.01
1928 1999 3.857157 AACTGAAGTTCCTGGCTTGTA 57.143 42.857 0.00 0.00 31.64 2.41
1930 2001 2.069273 CTGAAGTTCCTGGCTTGTACG 58.931 52.381 0.00 0.00 0.00 3.67
1932 2003 2.629137 TGAAGTTCCTGGCTTGTACGTA 59.371 45.455 0.00 0.00 0.00 3.57
1933 2004 3.251571 GAAGTTCCTGGCTTGTACGTAG 58.748 50.000 0.00 0.00 0.00 3.51
1934 2005 2.522185 AGTTCCTGGCTTGTACGTAGA 58.478 47.619 0.00 0.00 0.00 2.59
1935 2006 3.097614 AGTTCCTGGCTTGTACGTAGAT 58.902 45.455 0.00 0.00 0.00 1.98
1936 2007 3.514309 AGTTCCTGGCTTGTACGTAGATT 59.486 43.478 0.00 0.00 0.00 2.40
1937 2008 3.520290 TCCTGGCTTGTACGTAGATTG 57.480 47.619 0.00 0.00 0.00 2.67
1938 2009 2.829720 TCCTGGCTTGTACGTAGATTGT 59.170 45.455 0.00 0.00 0.00 2.71
1939 2010 4.018490 TCCTGGCTTGTACGTAGATTGTA 58.982 43.478 0.00 0.00 0.00 2.41
1940 2011 4.097437 TCCTGGCTTGTACGTAGATTGTAG 59.903 45.833 0.00 0.00 0.00 2.74
1941 2012 4.142227 CCTGGCTTGTACGTAGATTGTAGT 60.142 45.833 0.00 0.00 0.00 2.73
1942 2013 5.066893 CCTGGCTTGTACGTAGATTGTAGTA 59.933 44.000 0.00 0.00 0.00 1.82
1943 2014 6.127810 TGGCTTGTACGTAGATTGTAGTAG 57.872 41.667 0.00 0.00 0.00 2.57
1944 2015 5.649395 TGGCTTGTACGTAGATTGTAGTAGT 59.351 40.000 0.00 0.00 0.00 2.73
1945 2016 6.183360 TGGCTTGTACGTAGATTGTAGTAGTC 60.183 42.308 0.00 0.00 0.00 2.59
1946 2017 6.183360 GGCTTGTACGTAGATTGTAGTAGTCA 60.183 42.308 0.00 0.00 0.00 3.41
1947 2018 6.906143 GCTTGTACGTAGATTGTAGTAGTCAG 59.094 42.308 0.00 0.00 0.00 3.51
1948 2019 7.201591 GCTTGTACGTAGATTGTAGTAGTCAGA 60.202 40.741 0.00 0.00 0.00 3.27
1949 2020 8.552083 TTGTACGTAGATTGTAGTAGTCAGAA 57.448 34.615 0.00 0.00 0.00 3.02
1950 2021 8.728337 TGTACGTAGATTGTAGTAGTCAGAAT 57.272 34.615 0.00 0.00 0.00 2.40
1951 2022 8.610035 TGTACGTAGATTGTAGTAGTCAGAATG 58.390 37.037 0.00 0.00 37.54 2.67
1952 2023 6.496571 ACGTAGATTGTAGTAGTCAGAATGC 58.503 40.000 0.00 0.00 34.76 3.56
1953 2024 6.319152 ACGTAGATTGTAGTAGTCAGAATGCT 59.681 38.462 0.00 0.00 34.76 3.79
1954 2025 6.853872 CGTAGATTGTAGTAGTCAGAATGCTC 59.146 42.308 0.00 0.00 34.76 4.26
1955 2026 6.782082 AGATTGTAGTAGTCAGAATGCTCA 57.218 37.500 0.00 0.00 34.76 4.26
1956 2027 6.568869 AGATTGTAGTAGTCAGAATGCTCAC 58.431 40.000 0.00 0.00 34.76 3.51
1957 2028 5.722021 TTGTAGTAGTCAGAATGCTCACA 57.278 39.130 0.00 0.00 34.76 3.58
1958 2029 5.722021 TGTAGTAGTCAGAATGCTCACAA 57.278 39.130 0.00 0.00 34.76 3.33
1959 2030 6.096673 TGTAGTAGTCAGAATGCTCACAAA 57.903 37.500 0.00 0.00 34.76 2.83
1978 2049 7.870826 TCACAAATAAATCTGTGTGTACCAAG 58.129 34.615 2.88 0.00 42.86 3.61
2009 2083 7.463544 TGAAATGAAATGTAGTACTGCAATCG 58.536 34.615 17.90 0.00 0.00 3.34
2015 2089 2.229543 TGTAGTACTGCAATCGTTCGGT 59.770 45.455 11.58 0.00 0.00 4.69
2034 5567 8.063630 CGTTCGGTAGTAAAATTTACACAACTT 58.936 33.333 17.00 0.00 0.00 2.66
2063 5689 4.966965 TTTTGAACTGCCAAAACGTCTA 57.033 36.364 0.00 0.00 40.04 2.59
2064 5690 3.955771 TTGAACTGCCAAAACGTCTAC 57.044 42.857 0.00 0.00 0.00 2.59
2065 5691 2.907634 TGAACTGCCAAAACGTCTACA 58.092 42.857 0.00 0.00 0.00 2.74
2066 5692 3.472652 TGAACTGCCAAAACGTCTACAT 58.527 40.909 0.00 0.00 0.00 2.29
2068 5694 4.336993 TGAACTGCCAAAACGTCTACATTT 59.663 37.500 0.00 0.00 0.00 2.32
2069 5695 5.527951 TGAACTGCCAAAACGTCTACATTTA 59.472 36.000 0.00 0.00 0.00 1.40
2070 5696 6.038382 TGAACTGCCAAAACGTCTACATTTAA 59.962 34.615 0.00 0.00 0.00 1.52
2071 5697 5.997385 ACTGCCAAAACGTCTACATTTAAG 58.003 37.500 0.00 0.00 0.00 1.85
2074 5700 7.040686 ACTGCCAAAACGTCTACATTTAAGAAT 60.041 33.333 0.00 0.00 0.00 2.40
2088 5721 8.950208 ACATTTAAGAATAGAGTAGTTGCCTC 57.050 34.615 0.00 0.00 0.00 4.70
2130 5765 4.401202 CCCTTACAACCTTATTTTCCGCAT 59.599 41.667 0.00 0.00 0.00 4.73
2131 5766 5.105513 CCCTTACAACCTTATTTTCCGCATT 60.106 40.000 0.00 0.00 0.00 3.56
2139 5774 6.459923 ACCTTATTTTCCGCATTTGCTTTAA 58.540 32.000 0.51 0.00 39.32 1.52
2140 5775 7.102993 ACCTTATTTTCCGCATTTGCTTTAAT 58.897 30.769 0.51 0.00 39.32 1.40
2150 5785 4.324402 GCATTTGCTTTAATGTGAACCTCG 59.676 41.667 0.00 0.00 37.72 4.63
2152 5787 3.134574 TGCTTTAATGTGAACCTCGGT 57.865 42.857 0.00 0.00 0.00 4.69
2177 5812 7.721286 TTTTTGGTTAATTTGCATGTACTGG 57.279 32.000 0.00 0.00 0.00 4.00
2178 5813 4.448537 TGGTTAATTTGCATGTACTGGC 57.551 40.909 0.00 0.00 0.00 4.85
2179 5814 4.085733 TGGTTAATTTGCATGTACTGGCT 58.914 39.130 10.03 0.00 0.00 4.75
2180 5815 5.257262 TGGTTAATTTGCATGTACTGGCTA 58.743 37.500 10.03 1.10 0.00 3.93
2181 5816 5.890985 TGGTTAATTTGCATGTACTGGCTAT 59.109 36.000 10.03 2.66 0.00 2.97
2182 5817 6.183360 TGGTTAATTTGCATGTACTGGCTATG 60.183 38.462 10.03 0.00 0.00 2.23
2183 5818 6.183360 GGTTAATTTGCATGTACTGGCTATGT 60.183 38.462 10.03 0.00 0.00 2.29
2185 5820 8.402472 GTTAATTTGCATGTACTGGCTATGTAA 58.598 33.333 10.03 1.26 0.00 2.41
2186 5821 7.587037 AATTTGCATGTACTGGCTATGTAAT 57.413 32.000 10.03 0.97 0.00 1.89
2187 5822 6.375945 TTTGCATGTACTGGCTATGTAATG 57.624 37.500 10.03 0.00 0.00 1.90
2309 5944 4.269363 GCAAAAAGGATGCATGCTATTCAC 59.731 41.667 21.95 7.83 43.29 3.18
2438 6073 0.183492 TGGAGGAGTGCAAGCTGTTT 59.817 50.000 0.00 0.00 0.00 2.83
2654 6309 8.709646 CAAACAACTAGAGGTACAATGTCTTAC 58.290 37.037 0.00 0.00 0.00 2.34
2764 6436 4.726035 AGATTGAGATTGGAGGCATCAT 57.274 40.909 0.00 0.00 0.00 2.45
3015 6687 1.198637 GCTTTGAGTTTGAGCTCGCAT 59.801 47.619 9.64 0.00 38.28 4.73
3032 6704 3.323403 TCGCATCATCATACACCCATACA 59.677 43.478 0.00 0.00 0.00 2.29
3109 6781 7.715686 TCACACTATCTCTTCGTAGTATCATGT 59.284 37.037 0.00 0.00 30.37 3.21
3113 6785 9.121658 ACTATCTCTTCGTAGTATCATGTTCAA 57.878 33.333 0.00 0.00 29.75 2.69
3123 6795 8.612619 CGTAGTATCATGTTCAAATTAGGCTTT 58.387 33.333 0.00 0.00 0.00 3.51
3195 6867 6.596497 TGATATGTATGTAGTCTTATCCGCGA 59.404 38.462 8.23 0.00 0.00 5.87
3214 6886 3.000727 CGACAGGTTTTAGTCACCATCC 58.999 50.000 0.00 0.00 36.67 3.51
3230 6902 4.517453 CACCATCCGTTTTCTTTTCCTACA 59.483 41.667 0.00 0.00 0.00 2.74
3278 6950 9.424319 GACTCATGAGAACTCAATTTACTTACA 57.576 33.333 29.27 0.00 43.58 2.41
3281 6953 9.778741 TCATGAGAACTCAATTTACTTACAACT 57.221 29.630 8.59 0.00 43.58 3.16
3379 7284 2.687700 ATTGGCTAGACACTGAGCAG 57.312 50.000 0.00 0.00 40.64 4.24
3525 7430 2.844946 TCAAAGCAGTTGTCCGATTGA 58.155 42.857 0.68 0.00 38.47 2.57
3540 7445 7.375053 TGTCCGATTGAATTATATCACGATGA 58.625 34.615 0.00 0.00 0.00 2.92
3591 7496 5.753744 CACTGATCTCGGACTATAAGACAC 58.246 45.833 0.00 0.00 0.00 3.67
3609 7514 3.275143 ACACCGTTGTGATGAGACAAAA 58.725 40.909 0.00 0.00 45.76 2.44
3715 9002 1.354368 TGGACTGAAAAGGATCACCCC 59.646 52.381 0.00 0.00 36.73 4.95
3758 9045 9.533831 ACCATGGTCTTAGAATATTCTTTTTGT 57.466 29.630 22.60 0.68 38.70 2.83
3769 9056 8.088365 AGAATATTCTTTTTGTGTAGCCAAACC 58.912 33.333 12.37 0.00 34.23 3.27
3805 9092 7.388500 CCAGATGGTCAATTGCTTTTGTTTTAT 59.612 33.333 0.00 0.00 0.00 1.40
3838 9126 5.885449 ACTCCCATTGTCAAATTTGGAAA 57.115 34.783 17.90 12.51 0.00 3.13
3842 9130 7.229106 ACTCCCATTGTCAAATTTGGAAAAATG 59.771 33.333 17.90 18.42 0.00 2.32
3844 9132 8.213679 TCCCATTGTCAAATTTGGAAAAATGTA 58.786 29.630 17.90 9.78 0.00 2.29
3845 9133 8.844244 CCCATTGTCAAATTTGGAAAAATGTAA 58.156 29.630 17.90 2.04 0.00 2.41
3846 9134 9.662545 CCATTGTCAAATTTGGAAAAATGTAAC 57.337 29.630 17.90 5.51 0.00 2.50
3894 9182 1.153168 CCTTAGCCGGTGGACATGG 60.153 63.158 1.90 0.00 0.00 3.66
3901 9189 1.884928 GCCGGTGGACATGGTTTTACT 60.885 52.381 1.90 0.00 0.00 2.24
3938 9226 9.981460 TCAGTATGAATATCCTAGATGCTCTAA 57.019 33.333 0.00 0.00 45.97 2.10
3960 9248 9.159364 TCTAAATAAGCATGATGATCATAGCAC 57.841 33.333 22.44 7.40 34.28 4.40
3972 9260 5.664457 TGATCATAGCACGAACTTCTTCAT 58.336 37.500 0.00 0.00 0.00 2.57
3982 9270 5.041940 ACGAACTTCTTCATACTTATCGGC 58.958 41.667 0.00 0.00 32.50 5.54
3985 9273 4.950050 ACTTCTTCATACTTATCGGCCAG 58.050 43.478 2.24 0.00 0.00 4.85
3993 9281 1.065491 ACTTATCGGCCAGCACATGAA 60.065 47.619 2.24 0.00 0.00 2.57
3994 9282 2.016318 CTTATCGGCCAGCACATGAAA 58.984 47.619 2.24 0.00 0.00 2.69
3995 9283 2.121291 TATCGGCCAGCACATGAAAA 57.879 45.000 2.24 0.00 0.00 2.29
3996 9284 1.255882 ATCGGCCAGCACATGAAAAA 58.744 45.000 2.24 0.00 0.00 1.94
4014 9302 2.359602 ACTCCTCGCCGAGTTCGA 60.360 61.111 13.83 2.35 40.23 3.71
4049 9337 2.125147 GGAGCCGCTACACATGCA 60.125 61.111 0.00 0.00 0.00 3.96
4055 9343 1.003545 GCCGCTACACATGCACATTAG 60.004 52.381 0.00 0.00 0.00 1.73
4059 9347 3.185188 CGCTACACATGCACATTAGATCC 59.815 47.826 0.00 0.00 0.00 3.36
4066 9354 6.269538 ACACATGCACATTAGATCCTAGATCT 59.730 38.462 11.58 11.58 0.00 2.75
4095 9383 3.444916 TCGTTCGGACATGATAAAGAGC 58.555 45.455 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.467258 CAAATTATTGAGTCTTTGTTGTGTCAT 57.533 29.630 0.00 0.00 38.94 3.06
2 3 7.920151 CCAAATTATTGAGTCTTTGTTGTGTCA 59.080 33.333 0.00 0.00 38.94 3.58
3 4 7.096065 GCCAAATTATTGAGTCTTTGTTGTGTC 60.096 37.037 0.00 0.00 38.94 3.67
4 5 6.701400 GCCAAATTATTGAGTCTTTGTTGTGT 59.299 34.615 0.00 0.00 38.94 3.72
5 6 6.146021 GGCCAAATTATTGAGTCTTTGTTGTG 59.854 38.462 0.00 0.00 38.94 3.33
6 7 6.223120 GGCCAAATTATTGAGTCTTTGTTGT 58.777 36.000 0.00 0.00 38.94 3.32
7 8 5.345741 CGGCCAAATTATTGAGTCTTTGTTG 59.654 40.000 2.24 0.00 38.94 3.33
8 9 5.469479 CGGCCAAATTATTGAGTCTTTGTT 58.531 37.500 2.24 0.00 38.94 2.83
9 10 4.618227 GCGGCCAAATTATTGAGTCTTTGT 60.618 41.667 2.24 0.00 38.94 2.83
10 11 3.859386 GCGGCCAAATTATTGAGTCTTTG 59.141 43.478 2.24 0.00 38.94 2.77
11 12 3.509575 TGCGGCCAAATTATTGAGTCTTT 59.490 39.130 2.24 0.00 38.94 2.52
12 13 3.088532 TGCGGCCAAATTATTGAGTCTT 58.911 40.909 2.24 0.00 38.94 3.01
13 14 2.722094 TGCGGCCAAATTATTGAGTCT 58.278 42.857 2.24 0.00 38.94 3.24
14 15 3.502191 TTGCGGCCAAATTATTGAGTC 57.498 42.857 2.24 0.00 38.94 3.36
15 16 4.499696 GCTATTGCGGCCAAATTATTGAGT 60.500 41.667 2.24 0.00 38.94 3.41
16 17 3.983344 GCTATTGCGGCCAAATTATTGAG 59.017 43.478 2.24 0.00 38.94 3.02
17 18 3.382865 TGCTATTGCGGCCAAATTATTGA 59.617 39.130 2.24 0.00 43.34 2.57
18 19 3.490526 GTGCTATTGCGGCCAAATTATTG 59.509 43.478 2.24 0.00 43.34 1.90
19 20 3.384467 AGTGCTATTGCGGCCAAATTATT 59.616 39.130 2.24 0.00 43.34 1.40
20 21 2.958355 AGTGCTATTGCGGCCAAATTAT 59.042 40.909 2.24 0.00 43.34 1.28
21 22 2.374184 AGTGCTATTGCGGCCAAATTA 58.626 42.857 2.24 0.00 43.34 1.40
22 23 1.185315 AGTGCTATTGCGGCCAAATT 58.815 45.000 2.24 0.00 43.34 1.82
23 24 1.135024 CAAGTGCTATTGCGGCCAAAT 60.135 47.619 2.24 4.56 43.34 2.32
24 25 0.243365 CAAGTGCTATTGCGGCCAAA 59.757 50.000 2.24 0.00 43.34 3.28
25 26 0.607762 TCAAGTGCTATTGCGGCCAA 60.608 50.000 2.24 0.00 43.34 4.52
26 27 1.002746 TCAAGTGCTATTGCGGCCA 60.003 52.632 2.24 0.00 43.34 5.36
27 28 0.744414 TCTCAAGTGCTATTGCGGCC 60.744 55.000 0.00 0.00 43.34 6.13
28 29 0.654683 CTCTCAAGTGCTATTGCGGC 59.345 55.000 0.00 0.00 43.34 6.53
29 30 1.662629 CACTCTCAAGTGCTATTGCGG 59.337 52.381 0.00 0.00 46.01 5.69
39 40 2.294791 CTCCGACACTTCACTCTCAAGT 59.705 50.000 0.00 0.00 34.24 3.16
40 41 2.554462 TCTCCGACACTTCACTCTCAAG 59.446 50.000 0.00 0.00 0.00 3.02
41 42 2.583143 TCTCCGACACTTCACTCTCAA 58.417 47.619 0.00 0.00 0.00 3.02
42 43 2.271944 TCTCCGACACTTCACTCTCA 57.728 50.000 0.00 0.00 0.00 3.27
43 44 2.814919 TCTTCTCCGACACTTCACTCTC 59.185 50.000 0.00 0.00 0.00 3.20
44 45 2.865079 TCTTCTCCGACACTTCACTCT 58.135 47.619 0.00 0.00 0.00 3.24
45 46 3.859411 ATCTTCTCCGACACTTCACTC 57.141 47.619 0.00 0.00 0.00 3.51
46 47 3.574396 TCAATCTTCTCCGACACTTCACT 59.426 43.478 0.00 0.00 0.00 3.41
47 48 3.914312 TCAATCTTCTCCGACACTTCAC 58.086 45.455 0.00 0.00 0.00 3.18
48 49 4.808414 ATCAATCTTCTCCGACACTTCA 57.192 40.909 0.00 0.00 0.00 3.02
49 50 4.201763 GCAATCAATCTTCTCCGACACTTC 60.202 45.833 0.00 0.00 0.00 3.01
50 51 3.686726 GCAATCAATCTTCTCCGACACTT 59.313 43.478 0.00 0.00 0.00 3.16
51 52 3.265791 GCAATCAATCTTCTCCGACACT 58.734 45.455 0.00 0.00 0.00 3.55
52 53 3.002791 TGCAATCAATCTTCTCCGACAC 58.997 45.455 0.00 0.00 0.00 3.67
53 54 3.333029 TGCAATCAATCTTCTCCGACA 57.667 42.857 0.00 0.00 0.00 4.35
54 55 3.064545 CCTTGCAATCAATCTTCTCCGAC 59.935 47.826 0.00 0.00 0.00 4.79
55 56 3.055167 TCCTTGCAATCAATCTTCTCCGA 60.055 43.478 0.00 0.00 0.00 4.55
56 57 3.273434 TCCTTGCAATCAATCTTCTCCG 58.727 45.455 0.00 0.00 0.00 4.63
57 58 7.521871 AATATCCTTGCAATCAATCTTCTCC 57.478 36.000 0.00 0.00 0.00 3.71
59 60 8.944029 CGATAATATCCTTGCAATCAATCTTCT 58.056 33.333 0.00 0.00 0.00 2.85
60 61 8.939929 TCGATAATATCCTTGCAATCAATCTTC 58.060 33.333 0.00 0.00 0.00 2.87
61 62 8.853077 TCGATAATATCCTTGCAATCAATCTT 57.147 30.769 0.00 0.00 0.00 2.40
62 63 8.853077 TTCGATAATATCCTTGCAATCAATCT 57.147 30.769 0.00 0.00 0.00 2.40
63 64 8.939929 TCTTCGATAATATCCTTGCAATCAATC 58.060 33.333 0.00 0.00 0.00 2.67
64 65 8.853077 TCTTCGATAATATCCTTGCAATCAAT 57.147 30.769 0.00 0.00 0.00 2.57
65 66 8.853077 ATCTTCGATAATATCCTTGCAATCAA 57.147 30.769 0.00 0.00 0.00 2.57
66 67 8.853077 AATCTTCGATAATATCCTTGCAATCA 57.147 30.769 0.00 0.00 0.00 2.57
67 68 9.766277 GAAATCTTCGATAATATCCTTGCAATC 57.234 33.333 0.00 0.00 0.00 2.67
68 69 9.288576 TGAAATCTTCGATAATATCCTTGCAAT 57.711 29.630 0.00 0.00 0.00 3.56
69 70 8.675705 TGAAATCTTCGATAATATCCTTGCAA 57.324 30.769 0.00 0.00 0.00 4.08
70 71 8.853077 ATGAAATCTTCGATAATATCCTTGCA 57.147 30.769 0.00 0.00 0.00 4.08
117 118 9.498307 CCGGTTGTTATTTATTTGAACATACTC 57.502 33.333 0.00 0.00 33.33 2.59
118 119 8.463607 CCCGGTTGTTATTTATTTGAACATACT 58.536 33.333 0.00 0.00 33.33 2.12
119 120 8.460428 TCCCGGTTGTTATTTATTTGAACATAC 58.540 33.333 0.00 0.00 33.33 2.39
120 121 8.577048 TCCCGGTTGTTATTTATTTGAACATA 57.423 30.769 0.00 0.00 33.33 2.29
121 122 7.177744 ACTCCCGGTTGTTATTTATTTGAACAT 59.822 33.333 0.00 0.00 33.33 2.71
122 123 6.490721 ACTCCCGGTTGTTATTTATTTGAACA 59.509 34.615 0.00 0.00 0.00 3.18
123 124 6.916440 ACTCCCGGTTGTTATTTATTTGAAC 58.084 36.000 0.00 0.00 0.00 3.18
124 125 7.527568 AACTCCCGGTTGTTATTTATTTGAA 57.472 32.000 0.00 0.00 36.70 2.69
138 139 4.283722 GTCATATCTATCCAACTCCCGGTT 59.716 45.833 0.00 0.00 38.93 4.44
139 140 3.833070 GTCATATCTATCCAACTCCCGGT 59.167 47.826 0.00 0.00 0.00 5.28
140 141 4.090090 AGTCATATCTATCCAACTCCCGG 58.910 47.826 0.00 0.00 0.00 5.73
141 142 5.730296 AAGTCATATCTATCCAACTCCCG 57.270 43.478 0.00 0.00 0.00 5.14
261 262 3.756082 ATGGGCCCTATCTCACAAAAA 57.244 42.857 25.70 0.00 0.00 1.94
262 263 3.756082 AATGGGCCCTATCTCACAAAA 57.244 42.857 25.70 0.00 0.00 2.44
263 264 3.756082 AAATGGGCCCTATCTCACAAA 57.244 42.857 25.70 0.00 0.00 2.83
264 265 3.756082 AAAATGGGCCCTATCTCACAA 57.244 42.857 25.70 0.00 0.00 3.33
265 266 3.756082 AAAAATGGGCCCTATCTCACA 57.244 42.857 25.70 0.00 0.00 3.58
282 283 1.338655 GGCCCTGTGCGAAACTAAAAA 59.661 47.619 0.00 0.00 42.61 1.94
283 284 0.955905 GGCCCTGTGCGAAACTAAAA 59.044 50.000 0.00 0.00 42.61 1.52
284 285 0.891904 GGGCCCTGTGCGAAACTAAA 60.892 55.000 17.04 0.00 42.61 1.85
285 286 1.302993 GGGCCCTGTGCGAAACTAA 60.303 57.895 17.04 0.00 42.61 2.24
286 287 2.349755 GGGCCCTGTGCGAAACTA 59.650 61.111 17.04 0.00 42.61 2.24
287 288 4.660938 GGGGCCCTGTGCGAAACT 62.661 66.667 24.38 0.00 42.61 2.66
293 294 4.759205 AAATCGGGGGCCCTGTGC 62.759 66.667 30.37 9.01 40.16 4.57
294 295 2.037208 AAAATCGGGGGCCCTGTG 59.963 61.111 30.37 16.73 0.00 3.66
295 296 2.037208 CAAAATCGGGGGCCCTGT 59.963 61.111 30.37 15.45 0.00 4.00
296 297 3.460868 GCAAAATCGGGGGCCCTG 61.461 66.667 26.50 26.50 0.00 4.45
297 298 4.777854 GGCAAAATCGGGGGCCCT 62.778 66.667 24.38 0.00 40.55 5.19
320 321 4.772687 GTCGTTCTTCCCGGGGCC 62.773 72.222 23.50 0.00 0.00 5.80
321 322 3.660732 GAGTCGTTCTTCCCGGGGC 62.661 68.421 23.50 5.26 0.00 5.80
322 323 1.542187 AAGAGTCGTTCTTCCCGGGG 61.542 60.000 23.50 6.77 42.54 5.73
323 324 0.320697 AAAGAGTCGTTCTTCCCGGG 59.679 55.000 16.85 16.85 45.41 5.73
324 325 2.165319 AAAAGAGTCGTTCTTCCCGG 57.835 50.000 0.00 0.00 45.41 5.73
325 326 3.864003 GGATAAAAGAGTCGTTCTTCCCG 59.136 47.826 8.08 0.00 45.41 5.14
326 327 5.087391 AGGATAAAAGAGTCGTTCTTCCC 57.913 43.478 13.03 4.70 45.41 3.97
327 328 4.799428 CGAGGATAAAAGAGTCGTTCTTCC 59.201 45.833 10.22 10.22 45.41 3.46
328 329 5.286558 CACGAGGATAAAAGAGTCGTTCTTC 59.713 44.000 5.62 0.00 45.41 2.87
330 331 4.458295 TCACGAGGATAAAAGAGTCGTTCT 59.542 41.667 0.00 0.00 41.72 3.01
331 332 4.730657 TCACGAGGATAAAAGAGTCGTTC 58.269 43.478 0.00 0.00 41.72 3.95
332 333 4.778534 TCACGAGGATAAAAGAGTCGTT 57.221 40.909 0.00 0.00 41.72 3.85
333 334 4.483311 GTTCACGAGGATAAAAGAGTCGT 58.517 43.478 0.00 0.00 44.32 4.34
334 335 3.858238 GGTTCACGAGGATAAAAGAGTCG 59.142 47.826 0.00 0.00 36.71 4.18
335 336 4.182339 GGGTTCACGAGGATAAAAGAGTC 58.818 47.826 0.00 0.00 0.00 3.36
336 337 3.581332 TGGGTTCACGAGGATAAAAGAGT 59.419 43.478 0.00 0.00 0.00 3.24
337 338 4.202245 TGGGTTCACGAGGATAAAAGAG 57.798 45.455 0.00 0.00 0.00 2.85
338 339 4.837093 ATGGGTTCACGAGGATAAAAGA 57.163 40.909 0.00 0.00 0.00 2.52
339 340 4.941263 TGAATGGGTTCACGAGGATAAAAG 59.059 41.667 0.00 0.00 39.36 2.27
340 341 4.912586 TGAATGGGTTCACGAGGATAAAA 58.087 39.130 0.00 0.00 39.36 1.52
341 342 4.561500 TGAATGGGTTCACGAGGATAAA 57.438 40.909 0.00 0.00 39.36 1.40
342 343 4.224147 TCTTGAATGGGTTCACGAGGATAA 59.776 41.667 0.00 0.00 43.72 1.75
343 344 3.772572 TCTTGAATGGGTTCACGAGGATA 59.227 43.478 0.00 0.00 43.72 2.59
344 345 2.571653 TCTTGAATGGGTTCACGAGGAT 59.428 45.455 0.00 0.00 43.72 3.24
345 346 1.974957 TCTTGAATGGGTTCACGAGGA 59.025 47.619 0.00 0.00 43.72 3.71
346 347 2.472695 TCTTGAATGGGTTCACGAGG 57.527 50.000 0.00 0.00 43.72 4.63
347 348 3.127548 CCATTCTTGAATGGGTTCACGAG 59.872 47.826 26.44 5.61 43.72 4.18
348 349 3.081061 CCATTCTTGAATGGGTTCACGA 58.919 45.455 26.44 0.00 43.72 4.35
349 350 3.492421 CCATTCTTGAATGGGTTCACG 57.508 47.619 26.44 6.76 43.72 4.35
357 358 6.600822 ACCTACTGATTCACCATTCTTGAATG 59.399 38.462 14.46 14.46 42.53 2.67
358 359 6.725364 ACCTACTGATTCACCATTCTTGAAT 58.275 36.000 0.00 0.00 44.64 2.57
359 360 6.013379 AGACCTACTGATTCACCATTCTTGAA 60.013 38.462 0.00 0.00 37.38 2.69
360 361 5.485353 AGACCTACTGATTCACCATTCTTGA 59.515 40.000 0.00 0.00 0.00 3.02
361 362 5.738909 AGACCTACTGATTCACCATTCTTG 58.261 41.667 0.00 0.00 0.00 3.02
362 363 6.380079 AAGACCTACTGATTCACCATTCTT 57.620 37.500 0.00 0.00 0.00 2.52
363 364 6.405953 CGTAAGACCTACTGATTCACCATTCT 60.406 42.308 0.00 0.00 43.02 2.40
364 365 5.749109 CGTAAGACCTACTGATTCACCATTC 59.251 44.000 0.00 0.00 43.02 2.67
365 366 5.395324 CCGTAAGACCTACTGATTCACCATT 60.395 44.000 0.00 0.00 43.02 3.16
366 367 4.099573 CCGTAAGACCTACTGATTCACCAT 59.900 45.833 0.00 0.00 43.02 3.55
367 368 3.446161 CCGTAAGACCTACTGATTCACCA 59.554 47.826 0.00 0.00 43.02 4.17
368 369 3.446516 ACCGTAAGACCTACTGATTCACC 59.553 47.826 0.00 0.00 43.02 4.02
369 370 4.715527 ACCGTAAGACCTACTGATTCAC 57.284 45.455 0.00 0.00 43.02 3.18
370 371 5.126061 GGTAACCGTAAGACCTACTGATTCA 59.874 44.000 0.00 0.00 43.02 2.57
371 372 5.359292 AGGTAACCGTAAGACCTACTGATTC 59.641 44.000 0.00 0.00 40.00 2.52
372 373 5.267587 AGGTAACCGTAAGACCTACTGATT 58.732 41.667 0.00 0.00 40.00 2.57
373 374 4.864726 AGGTAACCGTAAGACCTACTGAT 58.135 43.478 0.00 0.00 40.00 2.90
374 375 4.263462 TGAGGTAACCGTAAGACCTACTGA 60.263 45.833 0.00 0.00 41.65 3.41
375 376 4.012374 TGAGGTAACCGTAAGACCTACTG 58.988 47.826 0.00 0.00 41.65 2.74
376 377 4.268359 CTGAGGTAACCGTAAGACCTACT 58.732 47.826 0.00 0.00 41.65 2.57
377 378 3.181492 GCTGAGGTAACCGTAAGACCTAC 60.181 52.174 0.00 0.00 41.65 3.18
378 379 3.019564 GCTGAGGTAACCGTAAGACCTA 58.980 50.000 0.00 0.00 41.65 3.08
379 380 1.823610 GCTGAGGTAACCGTAAGACCT 59.176 52.381 0.00 0.00 43.99 3.85
380 381 1.134877 GGCTGAGGTAACCGTAAGACC 60.135 57.143 0.00 0.00 43.02 3.85
381 382 1.547372 TGGCTGAGGTAACCGTAAGAC 59.453 52.381 0.00 0.00 43.02 3.01
382 383 1.927487 TGGCTGAGGTAACCGTAAGA 58.073 50.000 0.00 0.00 43.02 2.10
383 384 2.754946 TTGGCTGAGGTAACCGTAAG 57.245 50.000 0.00 0.00 37.17 2.34
384 385 2.369532 ACTTTGGCTGAGGTAACCGTAA 59.630 45.455 0.00 0.00 37.17 3.18
385 386 1.972795 ACTTTGGCTGAGGTAACCGTA 59.027 47.619 0.00 0.00 37.17 4.02
386 387 0.763035 ACTTTGGCTGAGGTAACCGT 59.237 50.000 0.00 0.00 37.17 4.83
387 388 1.892209 AACTTTGGCTGAGGTAACCG 58.108 50.000 0.00 0.00 37.17 4.44
388 389 4.321008 GCTAAAACTTTGGCTGAGGTAACC 60.321 45.833 3.52 0.00 40.89 2.85
389 390 4.612939 CGCTAAAACTTTGGCTGAGGTAAC 60.613 45.833 8.61 0.00 41.76 2.50
390 391 3.500680 CGCTAAAACTTTGGCTGAGGTAA 59.499 43.478 8.61 0.00 41.76 2.85
391 392 3.071479 CGCTAAAACTTTGGCTGAGGTA 58.929 45.455 8.61 0.00 41.76 3.08
392 393 1.880027 CGCTAAAACTTTGGCTGAGGT 59.120 47.619 8.61 0.00 41.76 3.85
393 394 1.880027 ACGCTAAAACTTTGGCTGAGG 59.120 47.619 8.61 0.00 41.76 3.86
394 395 3.555518 GAACGCTAAAACTTTGGCTGAG 58.444 45.455 8.61 0.00 41.76 3.35
395 396 2.292292 GGAACGCTAAAACTTTGGCTGA 59.708 45.455 8.61 0.00 41.76 4.26
396 397 2.661594 GGAACGCTAAAACTTTGGCTG 58.338 47.619 8.61 5.30 41.76 4.85
440 441 4.641989 ACTAAATGCCTGCTGAGTAAATGG 59.358 41.667 0.00 0.00 0.00 3.16
443 444 6.648879 AAAACTAAATGCCTGCTGAGTAAA 57.351 33.333 0.00 0.00 0.00 2.01
446 447 6.660949 AGATTAAAACTAAATGCCTGCTGAGT 59.339 34.615 0.00 0.00 0.00 3.41
456 457 9.231297 TGAGAACCTCCAGATTAAAACTAAATG 57.769 33.333 0.00 0.00 0.00 2.32
462 463 6.095580 GGGATTGAGAACCTCCAGATTAAAAC 59.904 42.308 0.00 0.00 0.00 2.43
472 473 2.701423 GGTCTAGGGATTGAGAACCTCC 59.299 54.545 0.00 0.00 35.84 4.30
498 499 6.017357 GGATATTATTTGTCGACCCAAAGACC 60.017 42.308 14.12 3.07 37.71 3.85
499 500 6.017357 GGGATATTATTTGTCGACCCAAAGAC 60.017 42.308 14.12 0.00 37.71 3.01
505 506 5.805728 AGATGGGATATTATTTGTCGACCC 58.194 41.667 14.12 3.08 36.92 4.46
555 556 6.727824 AAAAGAATCGTCGAACAATCAGAT 57.272 33.333 0.00 0.00 0.00 2.90
557 558 6.362686 TCAAAAAGAATCGTCGAACAATCAG 58.637 36.000 0.00 0.00 0.00 2.90
558 559 6.201997 TCTCAAAAAGAATCGTCGAACAATCA 59.798 34.615 0.00 0.00 0.00 2.57
559 560 6.516695 GTCTCAAAAAGAATCGTCGAACAATC 59.483 38.462 0.00 0.00 35.21 2.67
560 561 6.202954 AGTCTCAAAAAGAATCGTCGAACAAT 59.797 34.615 0.00 0.00 35.21 2.71
561 562 5.522460 AGTCTCAAAAAGAATCGTCGAACAA 59.478 36.000 0.00 0.00 35.21 2.83
572 573 7.380431 TCGGTGTAAAAAGTCTCAAAAAGAA 57.620 32.000 0.00 0.00 35.21 2.52
716 718 7.202001 GGATCTTGGTGATTAAATTAAAGGGGG 60.202 40.741 0.00 0.00 35.14 5.40
843 845 5.047188 CCATTTGTTTAAGGTTTCTTGCGT 58.953 37.500 0.00 0.00 34.59 5.24
844 846 5.174943 GTCCATTTGTTTAAGGTTTCTTGCG 59.825 40.000 0.00 0.00 34.59 4.85
890 892 9.781425 AGGATTCTGGATATATAGAAGTGTCAT 57.219 33.333 4.65 0.00 36.47 3.06
894 896 8.474025 GGTCAGGATTCTGGATATATAGAAGTG 58.526 40.741 0.00 3.06 41.23 3.16
897 899 8.972662 TTGGTCAGGATTCTGGATATATAGAA 57.027 34.615 0.00 1.33 41.23 2.10
944 946 2.711009 TGGGTGAGAAGAAAGGTGATGT 59.289 45.455 0.00 0.00 0.00 3.06
968 992 3.317993 CCTCACTCCTTAGAGAAGCTAGC 59.682 52.174 6.62 6.62 43.39 3.42
980 1004 2.909504 TACTCTGCTCCTCACTCCTT 57.090 50.000 0.00 0.00 0.00 3.36
1041 1065 0.882042 CGCAGATCCATGGCAGTACC 60.882 60.000 6.96 0.00 39.84 3.34
1546 1570 2.477176 GCACACGGAACAACTGGCA 61.477 57.895 0.00 0.00 0.00 4.92
1601 1647 3.056107 ACATGAGCTGCAAATCAAGCAAT 60.056 39.130 0.00 0.00 42.17 3.56
1637 1687 4.731612 AGCTCCTCACAGCACGCG 62.732 66.667 3.53 3.53 42.40 6.01
1919 1990 4.995124 ACTACAATCTACGTACAAGCCAG 58.005 43.478 0.00 0.00 0.00 4.85
1921 1992 6.129053 ACTACTACAATCTACGTACAAGCC 57.871 41.667 0.00 0.00 0.00 4.35
1922 1993 6.779117 TGACTACTACAATCTACGTACAAGC 58.221 40.000 0.00 0.00 0.00 4.01
1923 1994 8.194433 TCTGACTACTACAATCTACGTACAAG 57.806 38.462 0.00 0.00 0.00 3.16
1924 1995 8.552083 TTCTGACTACTACAATCTACGTACAA 57.448 34.615 0.00 0.00 0.00 2.41
1925 1996 8.610035 CATTCTGACTACTACAATCTACGTACA 58.390 37.037 0.00 0.00 0.00 2.90
1926 1997 7.587028 GCATTCTGACTACTACAATCTACGTAC 59.413 40.741 0.00 0.00 0.00 3.67
1928 1999 6.319152 AGCATTCTGACTACTACAATCTACGT 59.681 38.462 0.00 0.00 0.00 3.57
1930 2001 7.646130 GTGAGCATTCTGACTACTACAATCTAC 59.354 40.741 0.00 0.00 0.00 2.59
1932 2003 6.153510 TGTGAGCATTCTGACTACTACAATCT 59.846 38.462 0.00 0.00 0.00 2.40
1933 2004 6.333416 TGTGAGCATTCTGACTACTACAATC 58.667 40.000 0.00 0.00 0.00 2.67
1934 2005 6.286240 TGTGAGCATTCTGACTACTACAAT 57.714 37.500 0.00 0.00 0.00 2.71
1935 2006 5.722021 TGTGAGCATTCTGACTACTACAA 57.278 39.130 0.00 0.00 0.00 2.41
1936 2007 5.722021 TTGTGAGCATTCTGACTACTACA 57.278 39.130 0.00 0.00 0.00 2.74
1937 2008 8.703604 TTATTTGTGAGCATTCTGACTACTAC 57.296 34.615 0.00 0.00 0.00 2.73
1938 2009 9.890629 ATTTATTTGTGAGCATTCTGACTACTA 57.109 29.630 0.00 0.00 0.00 1.82
1939 2010 8.798859 ATTTATTTGTGAGCATTCTGACTACT 57.201 30.769 0.00 0.00 0.00 2.57
1940 2011 8.887717 AGATTTATTTGTGAGCATTCTGACTAC 58.112 33.333 0.00 0.00 0.00 2.73
1941 2012 8.886719 CAGATTTATTTGTGAGCATTCTGACTA 58.113 33.333 0.00 0.00 31.90 2.59
1942 2013 7.392673 ACAGATTTATTTGTGAGCATTCTGACT 59.607 33.333 0.00 0.00 33.89 3.41
1943 2014 7.484007 CACAGATTTATTTGTGAGCATTCTGAC 59.516 37.037 7.43 0.00 45.79 3.51
1944 2015 7.175467 ACACAGATTTATTTGTGAGCATTCTGA 59.825 33.333 17.25 0.00 45.79 3.27
1945 2016 7.272731 CACACAGATTTATTTGTGAGCATTCTG 59.727 37.037 17.25 0.00 45.79 3.02
1946 2017 7.040201 ACACACAGATTTATTTGTGAGCATTCT 60.040 33.333 17.25 0.00 45.79 2.40
1947 2018 7.086376 ACACACAGATTTATTTGTGAGCATTC 58.914 34.615 17.25 0.00 45.79 2.67
1948 2019 6.985117 ACACACAGATTTATTTGTGAGCATT 58.015 32.000 17.25 0.00 45.79 3.56
1949 2020 6.579666 ACACACAGATTTATTTGTGAGCAT 57.420 33.333 17.25 0.00 45.79 3.79
1950 2021 6.072728 GGTACACACAGATTTATTTGTGAGCA 60.073 38.462 17.25 1.23 45.79 4.26
1951 2022 6.072728 TGGTACACACAGATTTATTTGTGAGC 60.073 38.462 17.25 7.69 45.79 4.26
1952 2023 7.433708 TGGTACACACAGATTTATTTGTGAG 57.566 36.000 17.25 12.74 45.79 3.51
1953 2024 7.717436 TCTTGGTACACACAGATTTATTTGTGA 59.283 33.333 17.25 0.00 45.79 3.58
1955 2026 8.514594 CATCTTGGTACACACAGATTTATTTGT 58.485 33.333 0.00 0.00 39.29 2.83
1956 2027 8.514594 ACATCTTGGTACACACAGATTTATTTG 58.485 33.333 0.00 0.00 39.29 2.32
1957 2028 8.635765 ACATCTTGGTACACACAGATTTATTT 57.364 30.769 0.00 0.00 39.29 1.40
1958 2029 9.905713 ATACATCTTGGTACACACAGATTTATT 57.094 29.630 0.00 0.00 39.29 1.40
1959 2030 9.330063 CATACATCTTGGTACACACAGATTTAT 57.670 33.333 0.00 3.53 39.29 1.40
1978 2049 9.869844 GCAGTACTACATTTCATTTCATACATC 57.130 33.333 0.00 0.00 0.00 3.06
2034 5567 3.569194 TGGCAGTTCAAAACAGAGGTA 57.431 42.857 0.00 0.00 0.00 3.08
2035 5568 2.435372 TGGCAGTTCAAAACAGAGGT 57.565 45.000 0.00 0.00 0.00 3.85
2036 5569 3.799281 TTTGGCAGTTCAAAACAGAGG 57.201 42.857 0.00 0.00 34.17 3.69
2108 5743 5.576447 ATGCGGAAAATAAGGTTGTAAGG 57.424 39.130 0.00 0.00 0.00 2.69
2130 5765 3.886505 ACCGAGGTTCACATTAAAGCAAA 59.113 39.130 0.00 0.00 0.00 3.68
2131 5766 3.482436 ACCGAGGTTCACATTAAAGCAA 58.518 40.909 0.00 0.00 0.00 3.91
2157 5792 4.085733 AGCCAGTACATGCAAATTAACCA 58.914 39.130 9.01 0.00 0.00 3.67
2177 5812 1.619654 TGGCATGCCCATTACATAGC 58.380 50.000 33.44 4.70 39.18 2.97
2190 5825 2.285083 CCTGAAAAATGGCATGGCATG 58.715 47.619 32.77 22.99 0.00 4.06
2202 5837 4.799715 TGGTAGGAAAGGACCTGAAAAA 57.200 40.909 0.00 0.00 40.81 1.94
2300 5935 3.262420 GCTTTCTCCTTCGTGAATAGCA 58.738 45.455 0.00 0.00 32.29 3.49
2309 5944 4.214119 TCATCTTTTGTGCTTTCTCCTTCG 59.786 41.667 0.00 0.00 0.00 3.79
2438 6073 5.538053 TGTTGTCTCCATTCCAGCAAAATAA 59.462 36.000 0.00 0.00 0.00 1.40
2654 6309 3.337358 TGTCACCTGCACATCATGTTAG 58.663 45.455 0.00 0.00 0.00 2.34
3015 6687 2.224185 GCGGTGTATGGGTGTATGATGA 60.224 50.000 0.00 0.00 0.00 2.92
3109 6781 9.959721 AAGAGATAGTGTAAAGCCTAATTTGAA 57.040 29.630 0.00 0.00 0.00 2.69
3115 6787 9.476928 ACTAGAAAGAGATAGTGTAAAGCCTAA 57.523 33.333 0.00 0.00 31.09 2.69
3137 6809 5.518128 GCGAATGCCATGAGTATGATACTAG 59.482 44.000 4.88 0.00 35.31 2.57
3195 6867 2.370849 ACGGATGGTGACTAAAACCTGT 59.629 45.455 0.00 0.00 38.60 4.00
3214 6886 9.595357 GACTTTTATCTGTAGGAAAAGAAAACG 57.405 33.333 18.43 0.00 40.89 3.60
3379 7284 4.906065 TTGAGCTTGATCACAATATGGC 57.094 40.909 0.00 0.00 35.37 4.40
3478 7383 6.990341 TCATGTCATCGATTTCACTTGATT 57.010 33.333 0.00 0.00 0.00 2.57
3491 7396 6.296365 ACTGCTTTGAATATCATGTCATCG 57.704 37.500 0.00 0.00 0.00 3.84
3492 7397 7.478322 ACAACTGCTTTGAATATCATGTCATC 58.522 34.615 5.73 0.00 38.73 2.92
3540 7445 4.556699 GCCTTTGCAATCGTCTAAGTTGTT 60.557 41.667 0.00 0.00 37.47 2.83
3591 7496 6.201556 CAAATTTTTGTCTCATCACAACGG 57.798 37.500 0.00 0.00 35.97 4.44
3609 7514 4.391523 GGTCATTTTTGCGGCATACAAATT 59.608 37.500 2.28 0.00 36.91 1.82
3758 9045 2.208619 TCGTCCCGGTTTGGCTACA 61.209 57.895 0.00 0.00 35.87 2.74
3762 9049 3.351416 GTGTCGTCCCGGTTTGGC 61.351 66.667 0.00 0.00 35.87 4.52
3769 9056 2.184322 CCATCTGGTGTCGTCCCG 59.816 66.667 0.00 0.00 0.00 5.14
3779 9066 4.261578 ACAAAAGCAATTGACCATCTGG 57.738 40.909 10.34 0.00 36.11 3.86
3780 9067 6.607735 AAAACAAAAGCAATTGACCATCTG 57.392 33.333 10.34 0.67 34.38 2.90
3783 9070 7.173047 GGTGATAAAACAAAAGCAATTGACCAT 59.827 33.333 10.34 0.00 34.38 3.55
3786 9073 7.713764 AGGTGATAAAACAAAAGCAATTGAC 57.286 32.000 10.34 0.30 34.38 3.18
3789 9076 8.203485 TGAGAAGGTGATAAAACAAAAGCAATT 58.797 29.630 0.00 0.00 0.00 2.32
3805 9092 2.711009 ACAATGGGAGTTGAGAAGGTGA 59.289 45.455 0.00 0.00 33.37 4.02
3894 9182 5.813080 ACTGACTTGGTTCACAGTAAAAC 57.187 39.130 0.00 0.00 40.96 2.43
3901 9189 7.047891 GGATATTCATACTGACTTGGTTCACA 58.952 38.462 0.00 0.00 0.00 3.58
3932 9220 8.336806 GCTATGATCATCATGCTTATTTAGAGC 58.663 37.037 12.53 6.53 37.70 4.09
3936 9224 7.818930 TCGTGCTATGATCATCATGCTTATTTA 59.181 33.333 12.53 0.00 37.70 1.40
3938 9226 6.168389 TCGTGCTATGATCATCATGCTTATT 58.832 36.000 12.53 0.00 37.70 1.40
3960 9248 4.444720 GGCCGATAAGTATGAAGAAGTTCG 59.555 45.833 0.00 0.00 35.17 3.95
3972 9260 1.760029 TCATGTGCTGGCCGATAAGTA 59.240 47.619 0.00 0.00 0.00 2.24
4002 9290 1.437772 GGAGATCTCGAACTCGGCGA 61.438 60.000 16.46 10.14 40.29 5.54
4003 9291 1.009449 GGAGATCTCGAACTCGGCG 60.009 63.158 16.46 0.00 40.29 6.46
4004 9292 0.309612 GAGGAGATCTCGAACTCGGC 59.690 60.000 16.46 0.11 40.29 5.54
4005 9293 1.669604 TGAGGAGATCTCGAACTCGG 58.330 55.000 16.46 0.00 45.32 4.63
4006 9294 2.031245 CCATGAGGAGATCTCGAACTCG 60.031 54.545 16.46 6.14 45.32 4.18
4007 9295 2.288152 GCCATGAGGAGATCTCGAACTC 60.288 54.545 16.46 16.42 45.32 3.01
4008 9296 1.686052 GCCATGAGGAGATCTCGAACT 59.314 52.381 16.46 8.10 45.32 3.01
4009 9297 1.686052 AGCCATGAGGAGATCTCGAAC 59.314 52.381 16.46 10.37 45.32 3.95
4010 9298 2.079170 AGCCATGAGGAGATCTCGAA 57.921 50.000 16.46 4.96 45.32 3.71
4011 9299 1.685517 CAAGCCATGAGGAGATCTCGA 59.314 52.381 16.46 3.54 45.32 4.04
4012 9300 1.270199 CCAAGCCATGAGGAGATCTCG 60.270 57.143 16.46 2.81 45.32 4.04
4013 9301 1.072015 CCCAAGCCATGAGGAGATCTC 59.928 57.143 14.75 14.75 42.74 2.75
4014 9302 1.138568 CCCAAGCCATGAGGAGATCT 58.861 55.000 0.00 0.00 36.89 2.75
4036 9324 2.549926 TCTAATGTGCATGTGTAGCGG 58.450 47.619 0.00 0.00 33.85 5.52
4037 9325 3.185188 GGATCTAATGTGCATGTGTAGCG 59.815 47.826 0.00 0.00 33.85 4.26
4040 9328 6.976934 TCTAGGATCTAATGTGCATGTGTA 57.023 37.500 0.00 0.00 0.00 2.90
4043 9331 6.931790 AGATCTAGGATCTAATGTGCATGT 57.068 37.500 8.11 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.