Multiple sequence alignment - TraesCS1B01G362800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G362800 chr1B 100.000 4558 0 0 3757 8314 591422590 591427147 0.000000e+00 8418.0
1 TraesCS1B01G362800 chr1B 100.000 2756 0 0 1 2756 591418834 591421589 0.000000e+00 5090.0
2 TraesCS1B01G362800 chr1B 88.300 1923 154 35 3802 5684 593737393 593735502 0.000000e+00 2239.0
3 TraesCS1B01G362800 chr1B 88.400 1431 119 24 3773 5176 593690771 593689361 0.000000e+00 1679.0
4 TraesCS1B01G362800 chr1B 85.892 1127 131 18 1202 2315 591351038 591352149 0.000000e+00 1175.0
5 TraesCS1B01G362800 chr1B 91.032 814 61 5 5679 6480 591355220 591356033 0.000000e+00 1088.0
6 TraesCS1B01G362800 chr1B 86.834 995 91 19 6152 7121 593689158 593688179 0.000000e+00 1075.0
7 TraesCS1B01G362800 chr1B 91.361 764 42 12 3768 4513 591352729 591353486 0.000000e+00 1024.0
8 TraesCS1B01G362800 chr1B 86.716 941 77 18 6214 7121 593735412 593734487 0.000000e+00 1002.0
9 TraesCS1B01G362800 chr1B 100.000 488 0 0 2933 3420 591421766 591422253 0.000000e+00 902.0
10 TraesCS1B01G362800 chr1B 92.058 554 29 8 5141 5680 591354630 591355182 0.000000e+00 765.0
11 TraesCS1B01G362800 chr1B 88.446 502 46 6 7822 8314 593684301 593683803 5.560000e-166 595.0
12 TraesCS1B01G362800 chr1B 90.150 467 28 4 6367 6815 591356783 591357249 7.190000e-165 592.0
13 TraesCS1B01G362800 chr1B 86.592 537 44 15 4506 5025 591354053 591354578 1.210000e-157 568.0
14 TraesCS1B01G362800 chr1B 88.739 444 38 6 7880 8314 593722232 593721792 4.420000e-147 532.0
15 TraesCS1B01G362800 chr1B 86.525 423 44 4 2312 2723 591352271 591352691 3.540000e-123 453.0
16 TraesCS1B01G362800 chr1B 95.276 127 4 2 7372 7497 72765930 72765805 5.090000e-47 200.0
17 TraesCS1B01G362800 chr1B 94.531 128 6 1 7379 7505 156585598 156585471 6.580000e-46 196.0
18 TraesCS1B01G362800 chr1B 94.488 127 5 2 7372 7497 72798818 72798693 2.370000e-45 195.0
19 TraesCS1B01G362800 chr1B 94.488 127 5 2 7372 7497 72876199 72876074 2.370000e-45 195.0
20 TraesCS1B01G362800 chr1B 94.828 116 6 0 5569 5684 593689354 593689239 1.840000e-41 182.0
21 TraesCS1B01G362800 chr1B 94.792 96 5 0 8219 8314 591359504 591359599 5.200000e-32 150.0
22 TraesCS1B01G362800 chr1B 90.654 107 9 1 7244 7349 593684843 593684737 3.130000e-29 141.0
23 TraesCS1B01G362800 chr1B 90.476 105 9 1 7244 7347 593722432 593722328 4.050000e-28 137.0
24 TraesCS1B01G362800 chr1B 87.719 114 14 0 6367 6480 591356639 591356752 5.240000e-27 134.0
25 TraesCS1B01G362800 chr1B 75.221 339 53 18 5142 5457 591354954 591354624 1.880000e-26 132.0
26 TraesCS1B01G362800 chr1B 87.288 118 12 3 8116 8233 591357895 591358009 1.880000e-26 132.0
27 TraesCS1B01G362800 chr1B 97.727 44 1 0 5050 5093 591354579 591354622 8.950000e-10 76.8
28 TraesCS1B01G362800 chr1D 92.006 2777 169 24 1 2756 436607266 436610010 0.000000e+00 3849.0
29 TraesCS1B01G362800 chr1D 88.450 1974 77 41 5431 7328 436612717 436614615 0.000000e+00 2242.0
30 TraesCS1B01G362800 chr1D 87.055 1545 159 20 1202 2723 436329033 436330559 0.000000e+00 1707.0
31 TraesCS1B01G362800 chr1D 95.809 1026 39 1 3757 4778 436610718 436611743 0.000000e+00 1653.0
32 TraesCS1B01G362800 chr1D 87.230 1159 77 25 4552 5684 436331754 436332867 0.000000e+00 1254.0
33 TraesCS1B01G362800 chr1D 91.595 809 47 8 3757 4549 436330566 436331369 0.000000e+00 1098.0
34 TraesCS1B01G362800 chr1D 94.659 674 26 6 4774 5445 436611770 436612435 0.000000e+00 1037.0
35 TraesCS1B01G362800 chr1D 89.149 811 74 7 5683 6480 436332905 436333714 0.000000e+00 998.0
36 TraesCS1B01G362800 chr1D 87.817 829 51 16 7493 8314 436614622 436615407 0.000000e+00 926.0
37 TraesCS1B01G362800 chr1D 80.381 1050 111 49 6379 7358 436334051 436335075 0.000000e+00 710.0
38 TraesCS1B01G362800 chr1D 89.744 429 22 11 2998 3420 436610257 436610669 5.710000e-146 529.0
39 TraesCS1B01G362800 chr1D 92.661 109 8 0 7949 8057 436335452 436335560 3.110000e-34 158.0
40 TraesCS1B01G362800 chr1D 75.758 330 60 14 5142 5455 436332635 436332310 1.870000e-31 148.0
41 TraesCS1B01G362800 chr1D 88.596 114 13 0 6367 6480 436333745 436333858 1.130000e-28 139.0
42 TraesCS1B01G362800 chr1D 90.385 104 10 0 6377 6480 436333905 436334008 4.050000e-28 137.0
43 TraesCS1B01G362800 chr1D 96.970 33 1 0 4778 4810 259781361 259781393 1.000000e-03 56.5
44 TraesCS1B01G362800 chr1D 100.000 28 0 0 5019 5046 18399157 18399184 1.500000e-02 52.8
45 TraesCS1B01G362800 chr1A 87.544 1975 154 45 3757 5684 533667919 533669848 0.000000e+00 2200.0
46 TraesCS1B01G362800 chr1A 90.775 1626 91 23 4886 6480 533691290 533692887 0.000000e+00 2117.0
47 TraesCS1B01G362800 chr1A 88.492 1538 123 27 4188 5684 534821460 534819936 0.000000e+00 1810.0
48 TraesCS1B01G362800 chr1A 85.756 1376 151 15 1202 2562 533665835 533667180 0.000000e+00 1413.0
49 TraesCS1B01G362800 chr1A 88.947 1149 77 24 3773 4891 533690130 533691258 0.000000e+00 1373.0
50 TraesCS1B01G362800 chr1A 90.458 807 68 6 5683 6480 533669886 533670692 0.000000e+00 1055.0
51 TraesCS1B01G362800 chr1A 96.535 635 13 5 7494 8125 533694574 533695202 0.000000e+00 1042.0
52 TraesCS1B01G362800 chr1A 90.347 777 36 8 6377 7123 533693213 533693980 0.000000e+00 983.0
53 TraesCS1B01G362800 chr1A 84.375 704 60 30 6346 7005 533670831 533671528 0.000000e+00 645.0
54 TraesCS1B01G362800 chr1A 83.562 584 69 14 6553 7121 534819859 534819288 9.560000e-144 521.0
55 TraesCS1B01G362800 chr1A 79.267 791 124 19 1209 1991 534832230 534831472 4.450000e-142 516.0
56 TraesCS1B01G362800 chr1A 90.698 387 27 3 3773 4155 534821843 534821462 2.680000e-139 507.0
57 TraesCS1B01G362800 chr1A 92.386 197 11 3 8118 8314 533695358 533695550 2.290000e-70 278.0
58 TraesCS1B01G362800 chr1A 93.889 180 6 2 7130 7304 533694153 533694332 4.950000e-67 267.0
59 TraesCS1B01G362800 chr1A 76.008 521 76 25 1720 2220 533689039 533689530 3.020000e-54 224.0
60 TraesCS1B01G362800 chr1A 89.333 150 13 1 2449 2595 533667518 533667667 1.430000e-42 185.0
61 TraesCS1B01G362800 chr1A 83.465 127 17 2 2504 2627 533690020 533690145 1.900000e-21 115.0
62 TraesCS1B01G362800 chr1A 93.243 74 4 1 7302 7375 533694502 533694574 3.170000e-19 108.0
63 TraesCS1B01G362800 chr1A 89.831 59 3 1 1127 1182 533665713 533665771 1.160000e-08 73.1
64 TraesCS1B01G362800 chr7D 85.600 500 59 9 2933 3420 421971580 421971082 5.760000e-141 512.0
65 TraesCS1B01G362800 chr3B 86.005 443 56 4 2933 3369 302356471 302356029 3.510000e-128 470.0
66 TraesCS1B01G362800 chr3B 82.821 390 56 8 2933 3312 5101657 5102045 1.030000e-88 339.0
67 TraesCS1B01G362800 chr3B 82.308 390 58 8 2933 3312 4230259 4230647 2.240000e-85 327.0
68 TraesCS1B01G362800 chr3B 95.868 121 4 1 7379 7498 457968682 457968802 2.370000e-45 195.0
69 TraesCS1B01G362800 chr2D 84.381 493 54 12 2934 3419 574415739 574415263 5.880000e-126 462.0
70 TraesCS1B01G362800 chr2D 77.900 638 105 26 3765 4380 617315475 617316098 1.710000e-96 364.0
71 TraesCS1B01G362800 chr2D 83.754 357 43 10 2933 3278 25643207 25642855 2.890000e-84 324.0
72 TraesCS1B01G362800 chr2D 95.968 124 4 1 7374 7496 520503812 520503935 5.090000e-47 200.0
73 TraesCS1B01G362800 chr2A 83.333 498 71 11 2933 3420 464859818 464860313 4.580000e-122 449.0
74 TraesCS1B01G362800 chr4D 83.916 429 57 10 2979 3396 143744800 143745227 4.670000e-107 399.0
75 TraesCS1B01G362800 chr4D 91.250 80 5 2 3332 3410 266943066 266943144 3.170000e-19 108.0
76 TraesCS1B01G362800 chr6B 96.748 123 2 2 7378 7499 653709201 653709322 3.930000e-48 204.0
77 TraesCS1B01G362800 chr6B 95.238 126 5 1 7379 7503 470914946 470914821 1.830000e-46 198.0
78 TraesCS1B01G362800 chr5B 97.458 118 3 0 7379 7496 73989982 73989865 1.410000e-47 202.0
79 TraesCS1B01G362800 chr7A 97.561 41 1 0 5019 5059 487250832 487250872 4.160000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G362800 chr1B 591418834 591427147 8313 False 4803.333333 8418 100.000000 1 8314 3 chr1B.!!$F2 8313
1 TraesCS1B01G362800 chr1B 593734487 593737393 2906 True 1620.500000 2239 87.508000 3802 7121 2 chr1B.!!$R8 3319
2 TraesCS1B01G362800 chr1B 593683803 593690771 6968 True 734.400000 1679 89.832400 3773 8314 5 chr1B.!!$R6 4541
3 TraesCS1B01G362800 chr1B 591351038 591359599 8561 False 559.800000 1175 90.103273 1202 8314 11 chr1B.!!$F1 7112
4 TraesCS1B01G362800 chr1B 593721792 593722432 640 True 334.500000 532 89.607500 7244 8314 2 chr1B.!!$R7 1070
5 TraesCS1B01G362800 chr1D 436607266 436615407 8141 False 1706.000000 3849 91.414167 1 8314 6 chr1D.!!$F4 8313
6 TraesCS1B01G362800 chr1D 436329033 436335560 6527 False 775.125000 1707 88.381500 1202 8057 8 chr1D.!!$F3 6855
7 TraesCS1B01G362800 chr1A 534819288 534821843 2555 True 946.000000 1810 87.584000 3773 7121 3 chr1A.!!$R2 3348
8 TraesCS1B01G362800 chr1A 533665713 533671528 5815 False 928.516667 2200 87.882833 1127 7005 6 chr1A.!!$F1 5878
9 TraesCS1B01G362800 chr1A 533689039 533695550 6511 False 723.000000 2117 89.510556 1720 8314 9 chr1A.!!$F2 6594
10 TraesCS1B01G362800 chr1A 534831472 534832230 758 True 516.000000 516 79.267000 1209 1991 1 chr1A.!!$R1 782
11 TraesCS1B01G362800 chr2D 617315475 617316098 623 False 364.000000 364 77.900000 3765 4380 1 chr2D.!!$F2 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 673 0.254747 TGTATGGTAGCCAAGGCACC 59.745 55.0 14.40 17.47 44.88 5.01 F
1287 1350 0.888619 CAACTCCGAGACTGCAGGTA 59.111 55.0 19.93 0.00 0.00 3.08 F
1898 1982 0.764890 AGCCAGGTCTAACTTGCACA 59.235 50.0 0.00 0.00 32.00 4.57 F
2372 2660 2.664402 ATGTTGTCTGGGCTTGAGTT 57.336 45.0 0.00 0.00 0.00 3.01 F
3349 4292 0.179156 CACGAGGCATGCATTGAACC 60.179 55.0 25.66 2.05 0.00 3.62 F
4504 5676 0.471591 AGGGCCCAAACTGCAAATCA 60.472 50.0 27.56 0.00 0.00 2.57 F
5187 7442 1.118838 GCTAGTGCCATCTCAGTCCT 58.881 55.0 0.00 0.00 0.00 3.85 F
5801 8465 1.254026 AGTTCGAGATGGTGACCGAA 58.746 50.0 0.00 0.00 38.49 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1882 1.042003 TTTCTGCTTGCCTGGCACAA 61.042 50.00 23.30 6.91 38.71 3.33 R
2623 3373 3.957497 TGTTGCAAGTCTTACCACCAAAT 59.043 39.13 0.00 0.00 0.00 2.32 R
3349 4292 0.180171 TGCCACCCCATGTTATCTCG 59.820 55.00 0.00 0.00 0.00 4.04 R
4076 5232 0.404426 GGGTAGGGTTGGCAAAGTCT 59.596 55.00 0.00 2.44 0.00 3.24 R
4693 6827 0.102120 ATCTCTTCTCGCAAGCTCCG 59.898 55.00 0.00 0.00 37.18 4.63 R
5681 8345 0.035056 CCTTCCCTTTGCGGTGATCT 60.035 55.00 0.00 0.00 0.00 2.75 R
6060 8724 0.179045 ACCTTCACGTTGCAGAGCTT 60.179 50.00 0.00 0.00 0.00 3.74 R
7476 14953 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.00 14.79 0.04 33.41 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 92 1.062587 CAACGCCTAATTCAAGAGCCG 59.937 52.381 0.00 0.00 0.00 5.52
88 96 2.284417 CGCCTAATTCAAGAGCCGTAAC 59.716 50.000 0.00 0.00 0.00 2.50
192 200 1.902508 TCGGCTTTCTTCCTCATGTCT 59.097 47.619 0.00 0.00 0.00 3.41
194 202 3.077359 CGGCTTTCTTCCTCATGTCTTT 58.923 45.455 0.00 0.00 0.00 2.52
199 207 5.356470 GCTTTCTTCCTCATGTCTTTAGCAT 59.644 40.000 0.00 0.00 0.00 3.79
232 240 4.213564 TCTTCAATCCTTGAGCTCCTTC 57.786 45.455 12.15 0.00 41.38 3.46
233 241 3.843027 TCTTCAATCCTTGAGCTCCTTCT 59.157 43.478 12.15 0.00 41.38 2.85
235 243 3.947868 TCAATCCTTGAGCTCCTTCTTG 58.052 45.455 12.15 8.76 34.08 3.02
236 244 3.328931 TCAATCCTTGAGCTCCTTCTTGT 59.671 43.478 12.15 0.00 34.08 3.16
237 245 4.077822 CAATCCTTGAGCTCCTTCTTGTT 58.922 43.478 12.15 0.00 0.00 2.83
238 246 3.131709 TCCTTGAGCTCCTTCTTGTTG 57.868 47.619 12.15 0.00 0.00 3.33
292 303 6.700960 TGTGACATTTTCCATCACATTTTCAC 59.299 34.615 2.28 0.00 45.89 3.18
301 312 2.061848 TCACATTTTCACCCTCCTCCA 58.938 47.619 0.00 0.00 0.00 3.86
321 332 4.133820 CCACCCGTGAATCAATAATAGCA 58.866 43.478 0.00 0.00 0.00 3.49
407 418 3.119137 CCTACACCATCAATCACACTCGA 60.119 47.826 0.00 0.00 0.00 4.04
432 443 1.881973 GTTTGTTCCTGCTCAGCATCA 59.118 47.619 0.00 0.00 38.13 3.07
450 461 4.274459 GCATCACTGTGGTTAGATTCATCC 59.726 45.833 8.11 0.00 0.00 3.51
453 464 4.532126 TCACTGTGGTTAGATTCATCCTGT 59.468 41.667 8.11 0.00 0.00 4.00
454 465 5.013079 TCACTGTGGTTAGATTCATCCTGTT 59.987 40.000 8.11 0.00 0.00 3.16
496 507 9.656040 TCATTTTCATTATTTTTCACATCCTGG 57.344 29.630 0.00 0.00 0.00 4.45
585 598 5.643379 TGGTCTTGGCTATTTGTTTGATC 57.357 39.130 0.00 0.00 0.00 2.92
596 609 7.553760 GGCTATTTGTTTGATCAAATTTGGGAT 59.446 33.333 23.05 13.43 42.88 3.85
616 629 4.141390 GGATTGACATCTTATCACCAGGGT 60.141 45.833 0.00 0.00 0.00 4.34
631 644 2.041081 CCAGGGTTTTATCACACCTCCA 59.959 50.000 0.00 0.00 33.09 3.86
660 673 0.254747 TGTATGGTAGCCAAGGCACC 59.745 55.000 14.40 17.47 44.88 5.01
662 675 0.995803 TATGGTAGCCAAGGCACCAA 59.004 50.000 27.20 18.22 46.63 3.67
675 688 3.393687 AGGCACCAATCACTTCCCTATA 58.606 45.455 0.00 0.00 0.00 1.31
723 736 7.884877 TCATTCTTGTTGGTTGTCATAGATTCT 59.115 33.333 0.00 0.00 0.00 2.40
729 742 8.589701 TGTTGGTTGTCATAGATTCTACTAGA 57.410 34.615 0.00 0.00 0.00 2.43
730 743 9.201989 TGTTGGTTGTCATAGATTCTACTAGAT 57.798 33.333 0.00 0.00 0.00 1.98
736 749 7.178573 TGTCATAGATTCTACTAGATCCCCTG 58.821 42.308 0.00 0.00 0.00 4.45
743 756 2.089600 ACTAGATCCCCTGCAGGTAC 57.910 55.000 30.63 17.70 0.00 3.34
751 764 1.271871 CCCCTGCAGGTACATGAACAA 60.272 52.381 30.63 0.00 0.00 2.83
752 765 2.086869 CCCTGCAGGTACATGAACAAG 58.913 52.381 30.63 7.41 0.00 3.16
760 773 3.330701 AGGTACATGAACAAGTGGGACAT 59.669 43.478 0.00 0.00 44.52 3.06
770 783 3.646162 ACAAGTGGGACATTGTCACTCTA 59.354 43.478 20.61 0.00 44.52 2.43
805 819 2.286365 TTTTCCACCTCCATGTCACC 57.714 50.000 0.00 0.00 0.00 4.02
815 829 1.780309 TCCATGTCACCAAGTTTCCCT 59.220 47.619 0.00 0.00 0.00 4.20
816 830 2.162681 CCATGTCACCAAGTTTCCCTC 58.837 52.381 0.00 0.00 0.00 4.30
858 873 4.287067 TGGCTCCAAATGATATACTCCCTC 59.713 45.833 0.00 0.00 0.00 4.30
862 877 5.476983 TCCAAATGATATACTCCCTCCAGT 58.523 41.667 0.00 0.00 0.00 4.00
877 892 1.843851 TCCAGTAGCCCCAAATACCTG 59.156 52.381 0.00 0.00 0.00 4.00
900 915 6.299141 TGTCTATTTCTATTTCTGGCATCCC 58.701 40.000 0.00 0.00 0.00 3.85
955 970 9.933240 ATCATTCCTTTTTCCTAAGAAGATGAT 57.067 29.630 0.00 0.00 32.35 2.45
956 971 9.182214 TCATTCCTTTTTCCTAAGAAGATGATG 57.818 33.333 0.00 0.00 32.35 3.07
965 980 8.539117 TTCCTAAGAAGATGATGTACATGAGA 57.461 34.615 14.43 0.00 39.56 3.27
1048 1063 3.556213 CGTGTCTTTCATTGGAGTGGGTA 60.556 47.826 0.00 0.00 0.00 3.69
1069 1085 6.415573 GGTATAACTCCCAACAAATGAGACT 58.584 40.000 0.00 0.00 0.00 3.24
1074 1090 3.221771 TCCCAACAAATGAGACTTGGTG 58.778 45.455 0.00 0.00 40.50 4.17
1083 1099 4.630644 ATGAGACTTGGTGTCACAGATT 57.369 40.909 5.12 0.00 46.30 2.40
1084 1100 4.978099 ATGAGACTTGGTGTCACAGATTT 58.022 39.130 5.12 0.00 46.30 2.17
1085 1101 5.380043 ATGAGACTTGGTGTCACAGATTTT 58.620 37.500 5.12 0.00 46.30 1.82
1115 1131 5.186992 TCTGGCTAGTAAGATGCAACACTAA 59.813 40.000 0.00 0.00 0.00 2.24
1122 1138 4.851639 AAGATGCAACACTAAGGGATCT 57.148 40.909 0.00 0.00 40.78 2.75
1123 1139 4.148128 AGATGCAACACTAAGGGATCTG 57.852 45.455 0.00 0.00 38.15 2.90
1144 1163 3.249320 TGCTAGCGTTTATAGTCGACGAT 59.751 43.478 15.63 15.63 38.99 3.73
1190 1230 1.405933 CGGCACAACATCAGATCCAGA 60.406 52.381 0.00 0.00 0.00 3.86
1198 1238 5.180117 ACAACATCAGATCCAGAAAAACTCG 59.820 40.000 0.00 0.00 0.00 4.18
1223 1286 2.048127 GAGTTCCACTTCCGCGCT 60.048 61.111 5.56 0.00 0.00 5.92
1252 1315 1.746517 GTTATCCGCCGATGGAGGT 59.253 57.895 5.50 0.00 43.32 3.85
1287 1350 0.888619 CAACTCCGAGACTGCAGGTA 59.111 55.000 19.93 0.00 0.00 3.08
1290 1353 1.546476 ACTCCGAGACTGCAGGTAAAG 59.454 52.381 19.93 9.78 0.00 1.85
1335 1402 1.209019 GCTCTTGATGCCTCTCTTCCA 59.791 52.381 0.00 0.00 0.00 3.53
1356 1426 4.463891 CCACTGATCTTATTGCCTTTGGTT 59.536 41.667 0.00 0.00 0.00 3.67
1383 1453 2.432456 GCGTGCATGTCGGACTCA 60.432 61.111 9.88 2.30 32.85 3.41
1445 1515 3.454858 ACCACTGGTGTTAGATCTGGAT 58.545 45.455 5.18 0.00 32.98 3.41
1453 1523 2.767960 TGTTAGATCTGGATGAGCTGCA 59.232 45.455 5.18 0.00 42.03 4.41
1454 1524 3.198417 TGTTAGATCTGGATGAGCTGCAA 59.802 43.478 5.18 0.00 42.03 4.08
1569 1639 2.203195 AGCGTGCCAGTTTGCTCA 60.203 55.556 0.00 0.00 30.37 4.26
1633 1712 1.292223 CATCGGTGAAGACGGTGGT 59.708 57.895 0.00 0.00 38.71 4.16
1662 1741 6.749923 ACTTTCATGAGGTTTGCTAATCTC 57.250 37.500 13.45 13.45 41.12 2.75
1686 1765 3.369892 GGATTCAACCTTCTGCTGCTCTA 60.370 47.826 0.00 0.00 0.00 2.43
1717 1796 5.843019 ACCTTTTGAATCTAGGTCTCCAA 57.157 39.130 0.00 0.00 37.78 3.53
1793 1874 1.735038 GCCGGGTCGAAAGTAGAAGTC 60.735 57.143 2.18 0.00 0.00 3.01
1801 1882 3.821600 TCGAAAGTAGAAGTCTCTGCTGT 59.178 43.478 0.00 0.00 43.15 4.40
1816 1900 2.441717 TGTTGTGCCAGGCAAGCA 60.442 55.556 18.28 12.67 41.47 3.91
1898 1982 0.764890 AGCCAGGTCTAACTTGCACA 59.235 50.000 0.00 0.00 32.00 4.57
2034 2118 4.638421 CAGTGGAGGATGCGGTAATAAAAA 59.362 41.667 0.00 0.00 0.00 1.94
2060 2144 8.347771 AGCAGCATATATACACATTTCAGTTTG 58.652 33.333 0.00 0.00 0.00 2.93
2070 2154 5.065218 ACACATTTCAGTTTGATATCTCCGC 59.935 40.000 3.98 0.00 0.00 5.54
2263 2381 5.130311 TGGATCTCCGAATCAAATTGTCCTA 59.870 40.000 0.00 0.00 39.43 2.94
2281 2399 9.829507 ATTGTCCTAAATTGTGTTTTCATTTGA 57.170 25.926 0.00 0.00 0.00 2.69
2283 2401 9.829507 TGTCCTAAATTGTGTTTTCATTTGAAT 57.170 25.926 0.00 0.00 33.54 2.57
2372 2660 2.664402 ATGTTGTCTGGGCTTGAGTT 57.336 45.000 0.00 0.00 0.00 3.01
2377 2665 4.263462 TGTTGTCTGGGCTTGAGTTCATAT 60.263 41.667 0.00 0.00 0.00 1.78
2380 2668 3.135530 GTCTGGGCTTGAGTTCATATCCT 59.864 47.826 0.00 0.00 0.00 3.24
2672 3425 7.988737 TCCAAGATAAAGCTTTACATGTCATG 58.011 34.615 20.85 15.85 0.00 3.07
2955 3894 6.830114 GAGATCCGTGTAACATCTTTTAGG 57.170 41.667 0.00 0.00 30.62 2.69
2956 3895 6.295719 AGATCCGTGTAACATCTTTTAGGT 57.704 37.500 0.00 0.00 35.74 3.08
2957 3896 6.708285 AGATCCGTGTAACATCTTTTAGGTT 58.292 36.000 0.00 0.00 35.74 3.50
2958 3897 7.166167 AGATCCGTGTAACATCTTTTAGGTTT 58.834 34.615 0.00 0.00 35.74 3.27
2959 3898 6.548441 TCCGTGTAACATCTTTTAGGTTTG 57.452 37.500 0.00 0.00 35.74 2.93
2960 3899 5.049267 TCCGTGTAACATCTTTTAGGTTTGC 60.049 40.000 0.00 0.00 35.74 3.68
2961 3900 5.151389 CGTGTAACATCTTTTAGGTTTGCC 58.849 41.667 0.00 0.00 35.74 4.52
2962 3901 5.278071 CGTGTAACATCTTTTAGGTTTGCCA 60.278 40.000 0.00 0.00 35.74 4.92
2963 3902 6.569610 CGTGTAACATCTTTTAGGTTTGCCAT 60.570 38.462 0.00 0.00 35.74 4.40
2964 3903 7.151976 GTGTAACATCTTTTAGGTTTGCCATT 58.848 34.615 0.00 0.00 33.36 3.16
2965 3904 7.116233 GTGTAACATCTTTTAGGTTTGCCATTG 59.884 37.037 0.00 0.00 33.36 2.82
2966 3905 6.418057 AACATCTTTTAGGTTTGCCATTGA 57.582 33.333 0.00 0.00 37.19 2.57
2967 3906 6.610075 ACATCTTTTAGGTTTGCCATTGAT 57.390 33.333 0.00 0.00 37.19 2.57
2968 3907 7.008021 ACATCTTTTAGGTTTGCCATTGATT 57.992 32.000 0.00 0.00 37.19 2.57
2969 3908 8.133024 ACATCTTTTAGGTTTGCCATTGATTA 57.867 30.769 0.00 0.00 37.19 1.75
2970 3909 8.592809 ACATCTTTTAGGTTTGCCATTGATTAA 58.407 29.630 0.00 0.00 37.19 1.40
2971 3910 9.603921 CATCTTTTAGGTTTGCCATTGATTAAT 57.396 29.630 0.00 0.00 37.19 1.40
2972 3911 9.822185 ATCTTTTAGGTTTGCCATTGATTAATC 57.178 29.630 8.60 8.60 37.19 1.75
2973 3912 9.034800 TCTTTTAGGTTTGCCATTGATTAATCT 57.965 29.630 16.24 0.00 37.19 2.40
2974 3913 9.657419 CTTTTAGGTTTGCCATTGATTAATCTT 57.343 29.630 16.24 1.72 37.19 2.40
2977 3916 7.910441 AGGTTTGCCATTGATTAATCTTTTG 57.090 32.000 16.24 10.41 37.19 2.44
2978 3917 7.452562 AGGTTTGCCATTGATTAATCTTTTGT 58.547 30.769 16.24 0.00 37.19 2.83
2979 3918 7.938490 AGGTTTGCCATTGATTAATCTTTTGTT 59.062 29.630 16.24 0.00 37.19 2.83
2980 3919 8.567104 GGTTTGCCATTGATTAATCTTTTGTTT 58.433 29.630 16.24 0.00 34.09 2.83
2981 3920 9.949174 GTTTGCCATTGATTAATCTTTTGTTTT 57.051 25.926 16.24 0.00 0.00 2.43
2984 3923 9.558396 TGCCATTGATTAATCTTTTGTTTTTCT 57.442 25.926 16.24 0.00 0.00 2.52
2999 3938 8.555166 TTTGTTTTTCTAATTGCACTAAGACG 57.445 30.769 0.00 0.00 0.00 4.18
3105 4044 3.075283 TCATGGGGAACTTCTTTTAGGCA 59.925 43.478 0.00 0.00 0.00 4.75
3106 4045 3.825908 TGGGGAACTTCTTTTAGGCAT 57.174 42.857 0.00 0.00 0.00 4.40
3225 4167 7.558161 TCATGATCTGACATTTTGATACCAC 57.442 36.000 0.00 0.00 0.00 4.16
3236 4178 7.624549 ACATTTTGATACCACTAGTCTGACAT 58.375 34.615 10.88 0.00 0.00 3.06
3253 4195 5.006153 TGACATATACTCTGTTGGAACCG 57.994 43.478 0.00 0.00 0.00 4.44
3261 4203 7.886629 ATACTCTGTTGGAACCGTATTAGTA 57.113 36.000 0.00 0.00 0.00 1.82
3266 4208 7.207383 TCTGTTGGAACCGTATTAGTATGATG 58.793 38.462 0.00 0.00 0.00 3.07
3287 4230 4.985413 TGTTAGCATGCTTCATTAACTGC 58.015 39.130 28.02 2.54 0.00 4.40
3293 4236 3.370840 TGCTTCATTAACTGCATCCCT 57.629 42.857 0.00 0.00 0.00 4.20
3321 4264 7.994911 TGAAGGAATGATGATAGCATAGTGTTT 59.005 33.333 0.00 0.00 34.11 2.83
3332 4275 3.379372 AGCATAGTGTTTGCATGGATCAC 59.621 43.478 12.62 12.62 42.62 3.06
3349 4292 0.179156 CACGAGGCATGCATTGAACC 60.179 55.000 25.66 2.05 0.00 3.62
3360 4303 4.880886 TGCATTGAACCGAGATAACATG 57.119 40.909 0.00 0.00 0.00 3.21
3400 4343 2.987125 GTGGCATAGTCACCGGGT 59.013 61.111 6.32 0.00 31.24 5.28
3401 4344 1.449601 GTGGCATAGTCACCGGGTG 60.450 63.158 21.27 21.27 31.24 4.61
3403 4346 1.298667 GGCATAGTCACCGGGTGTT 59.701 57.895 25.53 17.34 34.79 3.32
3415 4358 3.257127 CACCGGGTGTTAAAAATCCACAT 59.743 43.478 19.15 0.00 0.00 3.21
3416 4359 4.459685 CACCGGGTGTTAAAAATCCACATA 59.540 41.667 19.15 0.00 0.00 2.29
3418 4361 5.717654 ACCGGGTGTTAAAAATCCACATAAT 59.282 36.000 6.32 0.00 0.00 1.28
3419 4362 6.890814 ACCGGGTGTTAAAAATCCACATAATA 59.109 34.615 6.32 0.00 0.00 0.98
3846 5001 3.951037 TGCAGTTCAGCTTGAAGGTAAAA 59.049 39.130 0.00 0.00 37.00 1.52
3893 5048 2.096248 GACAAACCCTGGTGTTGTTGA 58.904 47.619 12.02 0.00 0.00 3.18
3922 5077 1.074752 GGCTCTCGCTGAAAAGAGTG 58.925 55.000 0.00 0.00 40.93 3.51
4076 5232 5.920664 AGGATGGGGTAAGGAATATGGTTTA 59.079 40.000 0.00 0.00 0.00 2.01
4364 5534 7.880160 ATAGTTTTTGTGGCATATAGCTGAA 57.120 32.000 0.00 0.00 44.79 3.02
4504 5676 0.471591 AGGGCCCAAACTGCAAATCA 60.472 50.000 27.56 0.00 0.00 2.57
4675 6807 8.814235 GCATTCTTCCATTATCTTTGAACATTG 58.186 33.333 0.00 0.00 0.00 2.82
4727 6861 7.630944 GCGAGAAGAGATTTTCTAAACCTAGGA 60.631 40.741 17.98 0.00 37.53 2.94
4779 6937 9.569167 GGCTAAAGAAGTTTGATAAAATACACC 57.431 33.333 0.00 0.00 0.00 4.16
4780 6938 9.274065 GCTAAAGAAGTTTGATAAAATACACCG 57.726 33.333 0.00 0.00 0.00 4.94
4781 6939 9.274065 CTAAAGAAGTTTGATAAAATACACCGC 57.726 33.333 0.00 0.00 0.00 5.68
4783 6941 7.391148 AGAAGTTTGATAAAATACACCGCAT 57.609 32.000 0.00 0.00 0.00 4.73
4784 6942 7.250569 AGAAGTTTGATAAAATACACCGCATG 58.749 34.615 0.00 0.00 0.00 4.06
4785 6943 6.751514 AGTTTGATAAAATACACCGCATGA 57.248 33.333 0.00 0.00 0.00 3.07
4786 6944 6.785191 AGTTTGATAAAATACACCGCATGAG 58.215 36.000 0.00 0.00 0.00 2.90
4788 6946 5.984233 TGATAAAATACACCGCATGAGAC 57.016 39.130 0.00 0.00 0.00 3.36
4790 6948 6.054941 TGATAAAATACACCGCATGAGACAT 58.945 36.000 0.00 0.00 0.00 3.06
4791 6949 4.621068 AAAATACACCGCATGAGACATG 57.379 40.909 0.00 7.29 0.00 3.21
4792 6950 2.988010 ATACACCGCATGAGACATGT 57.012 45.000 0.00 0.00 0.00 3.21
4793 6951 2.008752 TACACCGCATGAGACATGTG 57.991 50.000 1.15 15.47 0.00 3.21
4795 6953 4.623814 CCGCATGAGACATGTGGT 57.376 55.556 26.32 0.00 42.92 4.16
4796 6954 2.858622 CCGCATGAGACATGTGGTT 58.141 52.632 26.32 0.00 42.92 3.67
4797 6955 2.022764 CCGCATGAGACATGTGGTTA 57.977 50.000 26.32 0.00 42.92 2.85
4798 6956 1.935873 CCGCATGAGACATGTGGTTAG 59.064 52.381 26.32 9.40 42.92 2.34
4799 6957 1.328680 CGCATGAGACATGTGGTTAGC 59.671 52.381 1.15 0.72 0.00 3.09
4800 6958 2.358957 GCATGAGACATGTGGTTAGCA 58.641 47.619 1.15 0.00 0.00 3.49
4801 6959 2.749076 GCATGAGACATGTGGTTAGCAA 59.251 45.455 1.15 0.00 0.00 3.91
4802 6960 3.191162 GCATGAGACATGTGGTTAGCAAA 59.809 43.478 1.15 0.00 0.00 3.68
4803 6961 4.321156 GCATGAGACATGTGGTTAGCAAAA 60.321 41.667 1.15 0.00 0.00 2.44
4804 6962 5.622914 GCATGAGACATGTGGTTAGCAAAAT 60.623 40.000 1.15 0.00 0.00 1.82
4805 6963 5.627499 TGAGACATGTGGTTAGCAAAATC 57.373 39.130 1.15 0.00 0.00 2.17
4806 6964 5.069318 TGAGACATGTGGTTAGCAAAATCA 58.931 37.500 1.15 0.00 0.00 2.57
4807 6965 5.534278 TGAGACATGTGGTTAGCAAAATCAA 59.466 36.000 1.15 0.00 0.00 2.57
4808 6966 6.040278 TGAGACATGTGGTTAGCAAAATCAAA 59.960 34.615 1.15 0.00 0.00 2.69
4809 6967 6.815089 AGACATGTGGTTAGCAAAATCAAAA 58.185 32.000 1.15 0.00 0.00 2.44
4810 6968 7.444299 AGACATGTGGTTAGCAAAATCAAAAT 58.556 30.769 1.15 0.00 0.00 1.82
4811 6969 8.584157 AGACATGTGGTTAGCAAAATCAAAATA 58.416 29.630 1.15 0.00 0.00 1.40
5046 7301 6.129179 TCCCTTCATTCCATAATTCTTGTCC 58.871 40.000 0.00 0.00 0.00 4.02
5086 7341 4.753610 ACATAGATTCATCGTCAATGCCAG 59.246 41.667 0.00 0.00 35.17 4.85
5093 7348 3.189080 TCATCGTCAATGCCAGTTCAAAG 59.811 43.478 0.00 0.00 35.17 2.77
5110 7365 6.712547 AGTTCAAAGACTTGGTATTTCAGGAG 59.287 38.462 0.00 0.00 33.01 3.69
5166 7421 5.163550 GCCACTAGTGTCTTTCCAAGTTTTT 60.164 40.000 21.18 0.00 0.00 1.94
5187 7442 1.118838 GCTAGTGCCATCTCAGTCCT 58.881 55.000 0.00 0.00 0.00 3.85
5231 7491 3.305539 CCTGACCATGTGATGTTTTGGTG 60.306 47.826 0.00 0.00 42.41 4.17
5243 7503 2.024414 GTTTTGGTGTTGCACTCTCCT 58.976 47.619 9.54 0.00 34.40 3.69
5269 7546 2.521126 ACCTTGGTTGGTTTTATCCGG 58.479 47.619 0.00 0.00 36.89 5.14
5320 7597 7.503011 CTCAAGACGTGATTGGGAAAAACCC 62.503 48.000 4.30 0.00 46.87 4.11
5360 7643 1.871080 ACGGTCTGAAAAGACAGCAG 58.129 50.000 8.06 0.00 40.38 4.24
5485 8068 8.785329 AATACACCATTTTTGTTTCAAAGTGT 57.215 26.923 16.15 16.15 39.17 3.55
5528 8113 5.455326 CCTCAGGTCTCCATAACCTAAATGG 60.455 48.000 0.00 0.00 45.48 3.16
5681 8345 2.511659 AGCAGCAAGAATCAGAAGCAA 58.488 42.857 0.00 0.00 0.00 3.91
5689 8353 3.529533 AGAATCAGAAGCAAGATCACCG 58.470 45.455 0.00 0.00 0.00 4.94
5801 8465 1.254026 AGTTCGAGATGGTGACCGAA 58.746 50.000 0.00 0.00 38.49 4.30
6060 8724 4.648626 GTGGCTCCCTGCTGTGCA 62.649 66.667 0.00 0.00 42.39 4.57
6108 8772 2.658548 TGCGACATGGAGTCTCACT 58.341 52.632 1.47 0.00 45.32 3.41
6299 8963 1.807165 CATGCGGACTCACCTGTCG 60.807 63.158 0.00 0.00 37.81 4.35
6323 8987 1.268539 CGGAAGCACACCAACAAACTC 60.269 52.381 0.00 0.00 0.00 3.01
6373 9049 2.044946 GGTGAAGAAGGCCGCCAT 60.045 61.111 13.15 0.00 33.37 4.40
6431 10123 0.318120 TCAACAGCAGCGATGACTCA 59.682 50.000 4.02 0.00 0.00 3.41
6458 10150 1.557269 AACCAGCAGCGGGAGAGATT 61.557 55.000 19.66 0.00 0.00 2.40
6470 10162 3.687551 CGGGAGAGATTGAGGTGGTAGTA 60.688 52.174 0.00 0.00 0.00 1.82
6526 10223 4.379243 CTGCGCCCGTGTCTCCTT 62.379 66.667 4.18 0.00 0.00 3.36
6934 10728 1.678360 CGATGTGTGCTGAAGTTTGC 58.322 50.000 0.00 0.00 0.00 3.68
6936 10730 2.287188 CGATGTGTGCTGAAGTTTGCTT 60.287 45.455 3.99 0.00 37.71 3.91
7033 10869 2.919228 AGTGTGAGTGAACTTGGAACC 58.081 47.619 0.00 0.00 0.00 3.62
7078 10915 9.530633 AGTACAACTTGTTTTAGACTTCAGTAG 57.469 33.333 0.00 0.00 0.00 2.57
7123 10960 4.224147 TGCCTGCATCTTTTGGTAGTACTA 59.776 41.667 0.00 0.00 0.00 1.82
7205 11225 6.208007 CAGCCACACCATTATCATGATAACAT 59.792 38.462 26.51 12.15 36.24 2.71
7286 14590 1.448540 CAGCAGGGTTACAGAGGCG 60.449 63.158 0.00 0.00 0.00 5.52
7294 14599 0.179045 GTTACAGAGGCGGGCATGAT 60.179 55.000 12.59 1.94 0.00 2.45
7341 14818 3.936372 GCAGAGCCATGCATGAAATAT 57.064 42.857 28.31 7.61 45.77 1.28
7364 14841 4.035102 GCGAGAAGGGCCAGGGTT 62.035 66.667 6.18 0.00 0.00 4.11
7366 14843 1.074951 CGAGAAGGGCCAGGGTTTT 59.925 57.895 6.18 0.00 0.00 2.43
7367 14844 1.244019 CGAGAAGGGCCAGGGTTTTG 61.244 60.000 6.18 0.00 0.00 2.44
7368 14845 0.178961 GAGAAGGGCCAGGGTTTTGT 60.179 55.000 6.18 0.00 0.00 2.83
7369 14846 0.469892 AGAAGGGCCAGGGTTTTGTG 60.470 55.000 6.18 0.00 0.00 3.33
7370 14847 2.099652 GAAGGGCCAGGGTTTTGTGC 62.100 60.000 6.18 0.00 0.00 4.57
7372 14849 2.439104 GGGCCAGGGTTTTGTGCAA 61.439 57.895 4.39 0.00 0.00 4.08
7373 14850 1.227527 GGCCAGGGTTTTGTGCAAC 60.228 57.895 0.00 0.00 37.35 4.17
7387 14864 4.150897 TGTGCAACATAATACTCCCTCC 57.849 45.455 0.00 0.00 45.67 4.30
7388 14865 3.131396 GTGCAACATAATACTCCCTCCG 58.869 50.000 0.00 0.00 36.32 4.63
7389 14866 2.769663 TGCAACATAATACTCCCTCCGT 59.230 45.455 0.00 0.00 0.00 4.69
7390 14867 3.199071 TGCAACATAATACTCCCTCCGTT 59.801 43.478 0.00 0.00 0.00 4.44
7391 14868 3.808174 GCAACATAATACTCCCTCCGTTC 59.192 47.826 0.00 0.00 0.00 3.95
7392 14869 4.049186 CAACATAATACTCCCTCCGTTCG 58.951 47.826 0.00 0.00 0.00 3.95
7393 14870 2.626743 ACATAATACTCCCTCCGTTCGG 59.373 50.000 4.74 4.74 0.00 4.30
7394 14871 2.734755 TAATACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
7395 14872 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
7396 14873 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
7397 14874 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
7398 14875 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
7399 14876 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
7400 14877 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
7401 14878 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
7402 14879 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
7403 14880 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
7404 14881 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
7405 14882 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
7406 14883 4.181578 CTCCGTTCGGAATTACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
7407 14884 5.327616 TCCGTTCGGAATTACTTGTCATA 57.672 39.130 11.66 0.00 0.00 2.15
7408 14885 5.722263 TCCGTTCGGAATTACTTGTCATAA 58.278 37.500 11.66 0.00 0.00 1.90
7409 14886 6.164876 TCCGTTCGGAATTACTTGTCATAAA 58.835 36.000 11.66 0.00 0.00 1.40
7410 14887 6.649973 TCCGTTCGGAATTACTTGTCATAAAA 59.350 34.615 11.66 0.00 0.00 1.52
7411 14888 7.334921 TCCGTTCGGAATTACTTGTCATAAAAT 59.665 33.333 11.66 0.00 0.00 1.82
7412 14889 7.428183 CCGTTCGGAATTACTTGTCATAAAATG 59.572 37.037 5.19 0.00 0.00 2.32
7413 14890 7.428183 CGTTCGGAATTACTTGTCATAAAATGG 59.572 37.037 0.00 0.00 0.00 3.16
7414 14891 8.455682 GTTCGGAATTACTTGTCATAAAATGGA 58.544 33.333 0.00 0.00 0.00 3.41
7415 14892 8.746052 TCGGAATTACTTGTCATAAAATGGAT 57.254 30.769 0.00 0.00 0.00 3.41
7416 14893 9.839817 TCGGAATTACTTGTCATAAAATGGATA 57.160 29.630 0.00 0.00 0.00 2.59
7469 14946 9.553064 ACATCTAGATACATTCATTTCTTGGAC 57.447 33.333 4.54 0.00 0.00 4.02
7470 14947 8.706936 CATCTAGATACATTCATTTCTTGGACG 58.293 37.037 4.54 0.00 0.00 4.79
7471 14948 8.007405 TCTAGATACATTCATTTCTTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
7472 14949 8.138074 TCTAGATACATTCATTTCTTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
7473 14950 6.644347 AGATACATTCATTTCTTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
7474 14951 7.782049 AGATACATTCATTTCTTGGACGAGTA 58.218 34.615 0.00 0.00 0.00 2.59
7475 14952 8.258007 AGATACATTCATTTCTTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
7476 14953 8.964476 ATACATTCATTTCTTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
7477 14954 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
7478 14955 7.752695 ACATTCATTTCTTGGACGAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
7479 14956 6.737254 TTCATTTCTTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
7480 14957 4.868171 TCATTTCTTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
7481 14958 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
7482 14959 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
7483 14960 3.841643 TCTTGGACGAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
7484 14961 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
7485 14962 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
7486 14963 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
7487 14964 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
7488 14965 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
7489 14966 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
7490 14967 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
7491 14968 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
7532 15009 2.360165 GCTATTCAAGGATGGCCTGTTG 59.640 50.000 3.32 2.34 46.28 3.33
7570 15047 2.292267 CGGCCTATTCAGCATGTCTTT 58.708 47.619 0.00 0.00 37.40 2.52
7581 15058 8.894768 ATTCAGCATGTCTTTATAAGGACTAC 57.105 34.615 23.46 14.72 37.40 2.73
7582 15059 7.661536 TCAGCATGTCTTTATAAGGACTACT 57.338 36.000 23.46 16.26 37.40 2.57
7598 15075 5.883673 AGGACTACTCTACATGACTTCAGAC 59.116 44.000 0.00 0.00 0.00 3.51
7638 15136 4.415596 TCTGCCCAAAATAACCACATCTT 58.584 39.130 0.00 0.00 0.00 2.40
7639 15137 4.220382 TCTGCCCAAAATAACCACATCTTG 59.780 41.667 0.00 0.00 0.00 3.02
7993 15878 1.202651 ACCTTCCTGTTGAGTTGGACG 60.203 52.381 0.00 0.00 0.00 4.79
8063 15949 6.036517 GGCAGTAAGTTCAGACAATACATCAG 59.963 42.308 0.00 0.00 0.00 2.90
8107 15998 3.435671 CAGTAGCAAAACTAGAAACCCGG 59.564 47.826 0.00 0.00 0.00 5.73
8110 16001 3.671716 AGCAAAACTAGAAACCCGGTAG 58.328 45.455 0.00 0.00 0.00 3.18
8150 16204 2.746279 TCTGCTTGGTTTCTTTGGGA 57.254 45.000 0.00 0.00 0.00 4.37
8190 16246 8.714179 TGAGAATGCAACAAATTTCATTTCATC 58.286 29.630 0.00 5.08 30.19 2.92
8305 17870 1.227556 GTTGCGCCGATCCCTGTAT 60.228 57.895 4.18 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.308450 TGGAGATTCTAGGGATAACATTGAG 57.692 40.000 0.00 0.00 0.00 3.02
18 19 6.581388 AATGTGATTTGGAGATTCTAGGGA 57.419 37.500 0.00 0.00 0.00 4.20
68 76 3.532542 AGTTACGGCTCTTGAATTAGGC 58.467 45.455 0.00 0.00 35.08 3.93
84 92 8.902540 TTATCCAATCATGATGGTGTAGTTAC 57.097 34.615 9.46 0.00 39.09 2.50
88 96 8.224389 TGTTTTATCCAATCATGATGGTGTAG 57.776 34.615 9.46 0.00 39.09 2.74
122 130 8.352942 GGGAAGGTATGATAAAATGATGACAAC 58.647 37.037 0.00 0.00 0.00 3.32
131 139 7.652554 ACAAGAAGGGGAAGGTATGATAAAAT 58.347 34.615 0.00 0.00 0.00 1.82
133 141 6.652205 ACAAGAAGGGGAAGGTATGATAAA 57.348 37.500 0.00 0.00 0.00 1.40
136 144 4.540099 TCAACAAGAAGGGGAAGGTATGAT 59.460 41.667 0.00 0.00 0.00 2.45
232 240 0.110486 ACACCTACTGCCCCAACAAG 59.890 55.000 0.00 0.00 0.00 3.16
233 241 0.553819 AACACCTACTGCCCCAACAA 59.446 50.000 0.00 0.00 0.00 2.83
235 243 1.244816 GAAACACCTACTGCCCCAAC 58.755 55.000 0.00 0.00 0.00 3.77
236 244 0.847373 TGAAACACCTACTGCCCCAA 59.153 50.000 0.00 0.00 0.00 4.12
237 245 1.004277 GATGAAACACCTACTGCCCCA 59.996 52.381 0.00 0.00 0.00 4.96
238 246 1.282157 AGATGAAACACCTACTGCCCC 59.718 52.381 0.00 0.00 0.00 5.80
292 303 1.972660 GATTCACGGGTGGAGGAGGG 61.973 65.000 0.00 0.00 0.00 4.30
301 312 4.141482 ACCTGCTATTATTGATTCACGGGT 60.141 41.667 0.00 0.00 0.00 5.28
321 332 3.718723 ACCTCTTCATAGCTCTCAACCT 58.281 45.455 0.00 0.00 0.00 3.50
407 418 3.077359 GCTGAGCAGGAACAAACTATGT 58.923 45.455 0.00 0.00 46.82 2.29
432 443 5.505181 AACAGGATGAATCTAACCACAGT 57.495 39.130 0.00 0.00 39.69 3.55
496 507 1.769465 GGGACTATGGAAGAAGGGGAC 59.231 57.143 0.00 0.00 0.00 4.46
541 554 8.044060 ACCAACTGTGATAAATGTGATAACTG 57.956 34.615 0.00 0.00 0.00 3.16
560 573 4.892934 TCAAACAAATAGCCAAGACCAACT 59.107 37.500 0.00 0.00 0.00 3.16
561 574 5.195001 TCAAACAAATAGCCAAGACCAAC 57.805 39.130 0.00 0.00 0.00 3.77
585 598 7.707893 GGTGATAAGATGTCAATCCCAAATTTG 59.292 37.037 11.40 11.40 32.77 2.32
596 609 4.927267 AACCCTGGTGATAAGATGTCAA 57.073 40.909 0.00 0.00 0.00 3.18
616 629 4.046286 AGGCATTGGAGGTGTGATAAAA 57.954 40.909 0.00 0.00 0.00 1.52
631 644 3.023832 GGCTACCATACAACAAGGCATT 58.976 45.455 0.00 0.00 33.30 3.56
660 673 6.295575 GGATGAGGTCTATAGGGAAGTGATTG 60.296 46.154 0.00 0.00 0.00 2.67
661 674 5.782845 GGATGAGGTCTATAGGGAAGTGATT 59.217 44.000 0.00 0.00 0.00 2.57
662 675 5.337788 GGATGAGGTCTATAGGGAAGTGAT 58.662 45.833 0.00 0.00 0.00 3.06
675 688 0.644380 TGGATGAGGGGATGAGGTCT 59.356 55.000 0.00 0.00 0.00 3.85
723 736 2.516702 TGTACCTGCAGGGGATCTAGTA 59.483 50.000 35.42 14.15 40.27 1.82
729 742 1.212935 GTTCATGTACCTGCAGGGGAT 59.787 52.381 35.42 20.67 40.27 3.85
730 743 0.618458 GTTCATGTACCTGCAGGGGA 59.382 55.000 35.42 20.91 40.27 4.81
736 749 1.812571 CCCACTTGTTCATGTACCTGC 59.187 52.381 0.00 0.00 0.00 4.85
743 756 3.569277 TGACAATGTCCCACTTGTTCATG 59.431 43.478 11.24 0.00 35.80 3.07
751 764 4.160329 TCTTAGAGTGACAATGTCCCACT 58.840 43.478 11.24 9.12 43.11 4.00
752 765 4.537135 TCTTAGAGTGACAATGTCCCAC 57.463 45.455 11.24 4.01 0.00 4.61
770 783 2.899900 GGAAAAACATGGGGCTCTTCTT 59.100 45.455 0.00 0.00 0.00 2.52
782 796 3.573967 GTGACATGGAGGTGGAAAAACAT 59.426 43.478 0.00 0.00 0.00 2.71
805 819 0.960861 GGCCTTCCGAGGGAAACTTG 60.961 60.000 0.00 0.00 41.54 3.16
815 829 2.286365 AAGTGAATTTGGCCTTCCGA 57.714 45.000 3.32 0.00 34.14 4.55
816 830 2.676076 CAAAGTGAATTTGGCCTTCCG 58.324 47.619 3.32 0.00 43.88 4.30
858 873 1.564348 ACAGGTATTTGGGGCTACTGG 59.436 52.381 0.00 0.00 0.00 4.00
862 877 5.670361 AGAAATAGACAGGTATTTGGGGCTA 59.330 40.000 0.00 0.00 33.60 3.93
877 892 6.538263 AGGGATGCCAGAAATAGAAATAGAC 58.462 40.000 5.86 0.00 0.00 2.59
900 915 8.921353 AATAGAAGAGGAAATGGATTCATGAG 57.079 34.615 0.00 0.00 39.98 2.90
984 999 0.625849 CACTGGCCTACCTTCCCATT 59.374 55.000 3.32 0.00 36.63 3.16
1048 1063 5.711976 CCAAGTCTCATTTGTTGGGAGTTAT 59.288 40.000 0.00 0.00 45.04 1.89
1057 1072 4.336433 CTGTGACACCAAGTCTCATTTGTT 59.664 41.667 2.45 0.00 46.25 2.83
1085 1101 5.804639 TGCATCTTACTAGCCAGAGAAAAA 58.195 37.500 0.00 0.00 0.00 1.94
1115 1131 4.153411 ACTATAAACGCTAGCAGATCCCT 58.847 43.478 16.45 0.00 0.00 4.20
1122 1138 2.609002 TCGTCGACTATAAACGCTAGCA 59.391 45.455 16.45 0.00 36.40 3.49
1123 1139 3.244670 TCGTCGACTATAAACGCTAGC 57.755 47.619 14.70 4.06 36.40 3.42
1144 1163 1.388768 CTTGCGCGAGATAAACGTGAA 59.611 47.619 20.57 0.00 42.62 3.18
1190 1230 1.981256 ACTCCATGGTGCGAGTTTTT 58.019 45.000 12.58 0.00 35.84 1.94
1223 1286 2.103538 GGATAACGCTCGTCGCCA 59.896 61.111 0.00 0.00 43.23 5.69
1237 1300 3.606662 CGACCTCCATCGGCGGAT 61.607 66.667 7.21 0.04 38.47 4.18
1249 1312 3.900892 CCGACATAGCCGCGACCT 61.901 66.667 8.23 6.02 0.00 3.85
1287 1350 1.135257 CGTCATCAGCGAGGAGACTTT 60.135 52.381 0.00 0.00 44.43 2.66
1290 1353 1.064946 CCGTCATCAGCGAGGAGAC 59.935 63.158 0.00 0.00 0.00 3.36
1335 1402 6.127619 GCTTAACCAAAGGCAATAAGATCAGT 60.128 38.462 0.00 0.00 35.58 3.41
1400 1470 1.382146 GATCTCCCCGTGGTACCCA 60.382 63.158 10.07 0.00 0.00 4.51
1435 1505 2.223900 CGTTGCAGCTCATCCAGATCTA 60.224 50.000 0.00 0.00 0.00 1.98
1464 1534 3.197983 CGTTCCCTTATCCTCTCCTTTGT 59.802 47.826 0.00 0.00 0.00 2.83
1466 1536 2.772515 CCGTTCCCTTATCCTCTCCTTT 59.227 50.000 0.00 0.00 0.00 3.11
1608 1687 2.047274 CTTCACCGATGCCACCGT 60.047 61.111 0.00 0.00 0.00 4.83
1633 1712 2.811431 CAAACCTCATGAAAGTACGGCA 59.189 45.455 0.00 0.00 0.00 5.69
1662 1741 1.089920 CAGCAGAAGGTTGAATCCCG 58.910 55.000 0.00 0.00 0.00 5.14
1763 1844 4.101448 GACCCGGCCTGCACAGAT 62.101 66.667 0.00 0.00 0.00 2.90
1793 1874 2.623915 GCCTGGCACAACAGCAGAG 61.624 63.158 15.17 0.00 38.70 3.35
1801 1882 1.042003 TTTCTGCTTGCCTGGCACAA 61.042 50.000 23.30 6.91 38.71 3.33
1816 1900 7.402054 TGTATCATGTACATCAGGGTTTTTCT 58.598 34.615 5.07 0.00 0.00 2.52
2034 2118 8.347771 CAAACTGAAATGTGTATATATGCTGCT 58.652 33.333 0.00 0.00 0.00 4.24
2060 2144 6.844696 TTTGTATTTCAGTGCGGAGATATC 57.155 37.500 0.00 0.00 0.00 1.63
2070 2154 9.904647 CAACACTTTGAATTTTGTATTTCAGTG 57.095 29.630 0.00 0.00 35.65 3.66
2125 2236 6.618287 ACAAGATTCAAATTGAGTTCGACA 57.382 33.333 0.00 0.00 0.00 4.35
2256 2374 9.658799 TTCAAATGAAAACACAATTTAGGACAA 57.341 25.926 0.00 0.00 0.00 3.18
2281 2399 5.815581 TGAAGATGTAAGGCCAGTACAATT 58.184 37.500 19.70 17.01 35.21 2.32
2283 2401 4.901197 TGAAGATGTAAGGCCAGTACAA 57.099 40.909 19.70 4.18 35.21 2.41
2290 2408 8.854614 ATACTTGAATATGAAGATGTAAGGCC 57.145 34.615 0.00 0.00 0.00 5.19
2326 2569 7.704472 ACGTGTTCATGTATTCAAAACAAACAT 59.296 29.630 0.00 0.00 36.12 2.71
2372 2660 5.782331 AGAATTGCAGTAGCCTAGGATATGA 59.218 40.000 14.75 0.00 41.13 2.15
2377 2665 4.844349 AAAGAATTGCAGTAGCCTAGGA 57.156 40.909 14.75 0.00 41.13 2.94
2407 2695 7.524863 CGACATTATTAGTAGGGCATCAAGGTA 60.525 40.741 0.00 0.00 0.00 3.08
2623 3373 3.957497 TGTTGCAAGTCTTACCACCAAAT 59.043 39.130 0.00 0.00 0.00 2.32
2938 3877 5.151389 GGCAAACCTAAAAGATGTTACACG 58.849 41.667 0.00 0.00 0.00 4.49
2951 3890 9.434420 CAAAAGATTAATCAATGGCAAACCTAA 57.566 29.630 17.56 0.00 36.63 2.69
2952 3891 8.592809 ACAAAAGATTAATCAATGGCAAACCTA 58.407 29.630 17.56 0.00 36.63 3.08
2954 3893 7.671495 ACAAAAGATTAATCAATGGCAAACC 57.329 32.000 17.56 0.00 0.00 3.27
2955 3894 9.949174 AAAACAAAAGATTAATCAATGGCAAAC 57.051 25.926 17.56 0.00 0.00 2.93
2958 3897 9.558396 AGAAAAACAAAAGATTAATCAATGGCA 57.442 25.926 17.56 0.00 0.00 4.92
2973 3912 9.015577 CGTCTTAGTGCAATTAGAAAAACAAAA 57.984 29.630 4.24 0.00 0.00 2.44
2974 3913 8.399425 TCGTCTTAGTGCAATTAGAAAAACAAA 58.601 29.630 4.24 0.00 0.00 2.83
2975 3914 7.921787 TCGTCTTAGTGCAATTAGAAAAACAA 58.078 30.769 4.24 0.00 0.00 2.83
2976 3915 7.225931 ACTCGTCTTAGTGCAATTAGAAAAACA 59.774 33.333 4.24 0.00 0.00 2.83
2977 3916 7.573627 ACTCGTCTTAGTGCAATTAGAAAAAC 58.426 34.615 4.24 0.00 0.00 2.43
2978 3917 7.724305 ACTCGTCTTAGTGCAATTAGAAAAA 57.276 32.000 4.24 0.00 0.00 1.94
2979 3918 7.656137 AGAACTCGTCTTAGTGCAATTAGAAAA 59.344 33.333 4.24 0.00 29.66 2.29
2980 3919 7.152645 AGAACTCGTCTTAGTGCAATTAGAAA 58.847 34.615 4.24 0.00 29.66 2.52
2981 3920 6.688578 AGAACTCGTCTTAGTGCAATTAGAA 58.311 36.000 4.24 0.00 29.66 2.10
2982 3921 6.268825 AGAACTCGTCTTAGTGCAATTAGA 57.731 37.500 0.00 0.00 29.66 2.10
2983 3922 6.952935 AAGAACTCGTCTTAGTGCAATTAG 57.047 37.500 0.00 0.00 45.18 1.73
2993 3932 8.954350 ACTACTTAATGCTAAGAACTCGTCTTA 58.046 33.333 0.07 0.00 45.18 2.10
2995 3934 7.393841 ACTACTTAATGCTAAGAACTCGTCT 57.606 36.000 0.07 0.00 38.35 4.18
2996 3935 9.008289 GTTACTACTTAATGCTAAGAACTCGTC 57.992 37.037 0.07 0.00 38.35 4.20
2997 3936 8.517878 TGTTACTACTTAATGCTAAGAACTCGT 58.482 33.333 0.07 0.00 38.35 4.18
2998 3937 8.906636 TGTTACTACTTAATGCTAAGAACTCG 57.093 34.615 0.07 0.00 38.35 4.18
3207 4149 7.178451 TCAGACTAGTGGTATCAAAATGTCAGA 59.822 37.037 0.00 0.00 0.00 3.27
3225 4167 7.809546 TCCAACAGAGTATATGTCAGACTAG 57.190 40.000 1.31 0.00 0.00 2.57
3236 4178 7.886629 ACTAATACGGTTCCAACAGAGTATA 57.113 36.000 0.00 0.00 30.83 1.47
3253 4195 9.208022 TGAAGCATGCTAACATCATACTAATAC 57.792 33.333 23.00 0.00 32.87 1.89
3261 4203 7.423199 CAGTTAATGAAGCATGCTAACATCAT 58.577 34.615 28.19 25.14 32.87 2.45
3266 4208 4.985413 TGCAGTTAATGAAGCATGCTAAC 58.015 39.130 23.00 20.26 34.80 2.34
3293 4236 8.819845 ACACTATGCTATCATCATTCCTTCATA 58.180 33.333 0.00 0.00 34.22 2.15
3321 4264 0.816421 CATGCCTCGTGATCCATGCA 60.816 55.000 0.00 0.00 0.00 3.96
3332 4275 1.063006 CGGTTCAATGCATGCCTCG 59.937 57.895 16.68 2.87 0.00 4.63
3349 4292 0.180171 TGCCACCCCATGTTATCTCG 59.820 55.000 0.00 0.00 0.00 4.04
3846 5001 3.400054 GGTAAGGCTGCCGACCCT 61.400 66.667 26.48 9.30 31.15 4.34
3893 5048 2.103143 CGAGAGCCATCGAAGCGT 59.897 61.111 2.10 0.00 45.56 5.07
3922 5077 1.067060 GTTCAAGCCCAAGTTGTCACC 59.933 52.381 1.45 0.00 0.00 4.02
4076 5232 0.404426 GGGTAGGGTTGGCAAAGTCT 59.596 55.000 0.00 2.44 0.00 3.24
4385 5555 4.092116 AGCTTTCAGCCTAACTTCAACT 57.908 40.909 0.00 0.00 43.77 3.16
4405 5576 7.531857 TTCAAGCATATAAGACCCTCTCTAG 57.468 40.000 0.00 0.00 0.00 2.43
4407 5578 6.385467 ACTTTCAAGCATATAAGACCCTCTCT 59.615 38.462 0.00 0.00 0.00 3.10
4504 5676 6.481643 ACACTTTGGCCATGTATTACTACTT 58.518 36.000 6.09 0.00 0.00 2.24
4611 6743 6.876257 AGACTAGAAATTAGCACCAAAGACAG 59.124 38.462 0.00 0.00 0.00 3.51
4675 6807 2.883253 GTGCTTCTCGCGCCTCTC 60.883 66.667 0.00 0.00 43.29 3.20
4693 6827 0.102120 ATCTCTTCTCGCAAGCTCCG 59.898 55.000 0.00 0.00 37.18 4.63
4778 6936 1.935873 CTAACCACATGTCTCATGCGG 59.064 52.381 13.15 13.15 0.00 5.69
4779 6937 1.328680 GCTAACCACATGTCTCATGCG 59.671 52.381 0.00 0.91 0.00 4.73
4780 6938 2.358957 TGCTAACCACATGTCTCATGC 58.641 47.619 0.00 0.00 0.00 4.06
4781 6939 5.375417 TTTTGCTAACCACATGTCTCATG 57.625 39.130 0.00 7.99 0.00 3.07
4783 6941 5.069318 TGATTTTGCTAACCACATGTCTCA 58.931 37.500 0.00 0.00 0.00 3.27
4784 6942 5.627499 TGATTTTGCTAACCACATGTCTC 57.373 39.130 0.00 0.00 0.00 3.36
4785 6943 6.403866 TTTGATTTTGCTAACCACATGTCT 57.596 33.333 0.00 0.00 0.00 3.41
4786 6944 7.656707 ATTTTGATTTTGCTAACCACATGTC 57.343 32.000 0.00 0.00 0.00 3.06
4788 6946 8.531622 TGTATTTTGATTTTGCTAACCACATG 57.468 30.769 0.00 0.00 0.00 3.21
4790 6948 9.853555 CTATGTATTTTGATTTTGCTAACCACA 57.146 29.630 0.00 0.00 0.00 4.17
4793 6951 9.736023 CCTCTATGTATTTTGATTTTGCTAACC 57.264 33.333 0.00 0.00 0.00 2.85
4797 6955 8.636213 CCATCCTCTATGTATTTTGATTTTGCT 58.364 33.333 0.00 0.00 33.34 3.91
4798 6956 8.632679 TCCATCCTCTATGTATTTTGATTTTGC 58.367 33.333 0.00 0.00 33.34 3.68
4805 6963 9.784531 ACTTGTATCCATCCTCTATGTATTTTG 57.215 33.333 0.00 0.00 33.34 2.44
4811 6969 8.700051 GCATATACTTGTATCCATCCTCTATGT 58.300 37.037 0.00 0.00 33.34 2.29
5086 7341 6.710744 TCTCCTGAAATACCAAGTCTTTGAAC 59.289 38.462 0.00 0.00 36.36 3.18
5093 7348 5.586643 GTGGAATCTCCTGAAATACCAAGTC 59.413 44.000 0.00 0.00 37.46 3.01
5110 7365 4.604976 GCTGCAACATTGATAGTGGAATC 58.395 43.478 0.00 0.00 0.00 2.52
5166 7421 1.208052 GGACTGAGATGGCACTAGCAA 59.792 52.381 0.00 0.00 44.61 3.91
5187 7442 4.263506 GGGAAGGAGAGATTGACAGGAAAA 60.264 45.833 0.00 0.00 0.00 2.29
5231 7491 2.952310 AGGTTTGAAAGGAGAGTGCAAC 59.048 45.455 0.00 0.00 0.00 4.17
5320 7597 2.766313 TCAGACGATCAACCTTGGTTG 58.234 47.619 22.58 22.58 35.78 3.77
5321 7598 3.139077 GTTCAGACGATCAACCTTGGTT 58.861 45.455 0.00 0.00 0.00 3.67
5322 7599 2.767505 GTTCAGACGATCAACCTTGGT 58.232 47.619 0.00 0.00 0.00 3.67
5346 7624 5.428496 TTCATGTTCTGCTGTCTTTTCAG 57.572 39.130 0.00 0.00 38.35 3.02
5360 7643 5.181811 TCTGACCATGTGATGTTTCATGTTC 59.818 40.000 0.00 0.00 39.53 3.18
5485 8068 4.074970 GAGGAAGAACAGAGGCAAAATCA 58.925 43.478 0.00 0.00 0.00 2.57
5528 8113 2.808543 CAAACTCCACTAAGCAGACACC 59.191 50.000 0.00 0.00 0.00 4.16
5681 8345 0.035056 CCTTCCCTTTGCGGTGATCT 60.035 55.000 0.00 0.00 0.00 2.75
5689 8353 0.529378 CATGTGAGCCTTCCCTTTGC 59.471 55.000 0.00 0.00 0.00 3.68
5735 8399 1.610673 TGCCTCTTCCTCCGCTTCT 60.611 57.895 0.00 0.00 0.00 2.85
5777 8441 2.093447 GGTCACCATCTCGAACTTCCAT 60.093 50.000 0.00 0.00 0.00 3.41
5801 8465 2.994995 TCGCACAGTGTCCCGGAT 60.995 61.111 0.73 0.00 0.00 4.18
5811 8475 3.046087 CTGCACCACCTCGCACAG 61.046 66.667 0.00 0.00 33.75 3.66
5873 8537 2.173669 CATCATGGTGACGCGGTCC 61.174 63.158 12.47 10.35 0.00 4.46
6060 8724 0.179045 ACCTTCACGTTGCAGAGCTT 60.179 50.000 0.00 0.00 0.00 3.74
6108 8772 2.281484 GTGCTTCCTGCCGGACAA 60.281 61.111 5.05 0.00 39.60 3.18
6175 8839 2.289945 GGCACAGTTTCTGATCCTGACT 60.290 50.000 10.08 0.00 35.18 3.41
6299 8963 4.966787 TTGGTGTGCTTCCGGCCC 62.967 66.667 0.00 0.00 40.92 5.80
6373 9049 2.526450 CTTGGATGAGCTGCCGACCA 62.526 60.000 0.00 0.00 0.00 4.02
6431 10123 0.886490 CCGCTGCTGGTTTCTTCACT 60.886 55.000 0.00 0.00 0.00 3.41
6458 10150 1.961394 GCCGATGATACTACCACCTCA 59.039 52.381 0.00 0.00 0.00 3.86
6526 10223 4.776322 CTTCCATGGGCGCCACGA 62.776 66.667 30.85 14.34 35.80 4.35
6936 10730 9.772973 GTCCATACACACATAAAGGTATATCAA 57.227 33.333 0.00 0.00 0.00 2.57
7123 10960 9.476202 GGCTGATTTGAAAACAAGTTAGTAAAT 57.524 29.630 0.00 0.00 0.00 1.40
7205 11225 5.066893 GCAGCCAGATTATTGATCAAACTGA 59.933 40.000 23.71 9.88 37.22 3.41
7286 14590 6.899393 TTCATTTACATCCTTATCATGCCC 57.101 37.500 0.00 0.00 0.00 5.36
7363 14840 5.417580 GGAGGGAGTATTATGTTGCACAAAA 59.582 40.000 0.00 0.00 0.00 2.44
7364 14841 4.947388 GGAGGGAGTATTATGTTGCACAAA 59.053 41.667 0.00 0.00 0.00 2.83
7366 14843 3.431626 CGGAGGGAGTATTATGTTGCACA 60.432 47.826 0.00 0.00 0.00 4.57
7367 14844 3.131396 CGGAGGGAGTATTATGTTGCAC 58.869 50.000 0.00 0.00 0.00 4.57
7368 14845 2.769663 ACGGAGGGAGTATTATGTTGCA 59.230 45.455 0.00 0.00 0.00 4.08
7369 14846 3.470645 ACGGAGGGAGTATTATGTTGC 57.529 47.619 0.00 0.00 0.00 4.17
7370 14847 4.049186 CGAACGGAGGGAGTATTATGTTG 58.951 47.826 0.00 0.00 0.00 3.33
7372 14849 2.626743 CCGAACGGAGGGAGTATTATGT 59.373 50.000 7.53 0.00 37.50 2.29
7373 14850 2.889045 TCCGAACGGAGGGAGTATTATG 59.111 50.000 12.04 0.00 39.76 1.90
7374 14851 3.234234 TCCGAACGGAGGGAGTATTAT 57.766 47.619 12.04 0.00 39.76 1.28
7375 14852 2.734755 TCCGAACGGAGGGAGTATTA 57.265 50.000 12.04 0.00 39.76 0.98
7376 14853 1.856629 TTCCGAACGGAGGGAGTATT 58.143 50.000 15.34 0.00 46.06 1.89
7377 14854 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
7378 14855 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
7379 14856 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
7380 14857 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
7381 14858 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
7382 14859 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
7383 14860 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
7384 14861 3.581755 TGACAAGTAATTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
7385 14862 3.663995 TGACAAGTAATTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
7386 14863 6.411630 TTTATGACAAGTAATTCCGAACGG 57.588 37.500 6.94 6.94 0.00 4.44
7387 14864 7.428183 CCATTTTATGACAAGTAATTCCGAACG 59.572 37.037 0.00 0.00 0.00 3.95
7388 14865 8.455682 TCCATTTTATGACAAGTAATTCCGAAC 58.544 33.333 0.00 0.00 0.00 3.95
7389 14866 8.568676 TCCATTTTATGACAAGTAATTCCGAA 57.431 30.769 0.00 0.00 0.00 4.30
7390 14867 8.746052 ATCCATTTTATGACAAGTAATTCCGA 57.254 30.769 0.00 0.00 0.00 4.55
7443 14920 9.553064 GTCCAAGAAATGAATGTATCTAGATGT 57.447 33.333 15.79 0.00 0.00 3.06
7444 14921 8.706936 CGTCCAAGAAATGAATGTATCTAGATG 58.293 37.037 15.79 0.00 0.00 2.90
7445 14922 8.642432 TCGTCCAAGAAATGAATGTATCTAGAT 58.358 33.333 10.73 10.73 0.00 1.98
7446 14923 8.007405 TCGTCCAAGAAATGAATGTATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
7447 14924 7.923344 ACTCGTCCAAGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
7448 14925 7.782049 ACTCGTCCAAGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
7449 14926 6.644347 ACTCGTCCAAGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
7450 14927 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
7451 14928 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
7452 14929 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
7453 14930 7.148239 GGAATTACTCGTCCAAGAAATGAATGT 60.148 37.037 0.00 0.00 33.79 2.71
7454 14931 7.189512 GGAATTACTCGTCCAAGAAATGAATG 58.810 38.462 0.00 0.00 33.79 2.67
7455 14932 6.037172 CGGAATTACTCGTCCAAGAAATGAAT 59.963 38.462 0.00 0.00 33.10 2.57
7456 14933 5.350365 CGGAATTACTCGTCCAAGAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
7457 14934 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
7458 14935 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
7459 14936 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
7460 14937 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
7461 14938 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
7462 14939 3.671433 CGTTCGGAATTACTCGTCCAAGA 60.671 47.826 0.00 0.00 33.10 3.02
7463 14940 2.597305 CGTTCGGAATTACTCGTCCAAG 59.403 50.000 0.00 0.00 33.10 3.61
7464 14941 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
7465 14942 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
7466 14943 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
7467 14944 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
7468 14945 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
7469 14946 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
7470 14947 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
7471 14948 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
7472 14949 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
7473 14950 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
7474 14951 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
7475 14952 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
7476 14953 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
7477 14954 0.251297 TTGTACTCCCTCCGTTCGGA 60.251 55.000 13.34 13.34 0.00 4.55
7478 14955 0.604578 TTTGTACTCCCTCCGTTCGG 59.395 55.000 4.74 4.74 0.00 4.30
7479 14956 2.094390 TGATTTGTACTCCCTCCGTTCG 60.094 50.000 0.00 0.00 0.00 3.95
7480 14957 3.604875 TGATTTGTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
7481 14958 3.071892 TGTTGATTTGTACTCCCTCCGTT 59.928 43.478 0.00 0.00 0.00 4.44
7482 14959 2.635915 TGTTGATTTGTACTCCCTCCGT 59.364 45.455 0.00 0.00 0.00 4.69
7483 14960 3.000727 GTGTTGATTTGTACTCCCTCCG 58.999 50.000 0.00 0.00 0.00 4.63
7484 14961 3.000727 CGTGTTGATTTGTACTCCCTCC 58.999 50.000 0.00 0.00 0.00 4.30
7485 14962 2.415512 GCGTGTTGATTTGTACTCCCTC 59.584 50.000 0.00 0.00 0.00 4.30
7486 14963 2.224426 TGCGTGTTGATTTGTACTCCCT 60.224 45.455 0.00 0.00 0.00 4.20
7487 14964 2.147958 TGCGTGTTGATTTGTACTCCC 58.852 47.619 0.00 0.00 0.00 4.30
7488 14965 2.806244 ACTGCGTGTTGATTTGTACTCC 59.194 45.455 0.00 0.00 0.00 3.85
7489 14966 3.363970 CCACTGCGTGTTGATTTGTACTC 60.364 47.826 7.68 0.00 0.00 2.59
7490 14967 2.548057 CCACTGCGTGTTGATTTGTACT 59.452 45.455 7.68 0.00 0.00 2.73
7491 14968 2.916111 CCACTGCGTGTTGATTTGTAC 58.084 47.619 7.68 0.00 0.00 2.90
7532 15009 2.793232 GCCGTACCATCTTGTTATCGAC 59.207 50.000 0.00 0.00 0.00 4.20
7549 15026 0.833287 AGACATGCTGAATAGGCCGT 59.167 50.000 0.00 0.00 0.00 5.68
7570 15047 9.562408 CTGAAGTCATGTAGAGTAGTCCTTATA 57.438 37.037 0.00 0.00 0.00 0.98
7581 15058 4.560819 GCTTTCGTCTGAAGTCATGTAGAG 59.439 45.833 0.00 0.00 35.06 2.43
7582 15059 4.218635 AGCTTTCGTCTGAAGTCATGTAGA 59.781 41.667 0.00 0.00 35.06 2.59
7993 15878 2.941720 GCATGGACTGATGAAGGAGAAC 59.058 50.000 0.00 0.00 0.00 3.01
8073 15959 0.386113 TGCTACTGTACGCACACACA 59.614 50.000 7.54 0.00 0.00 3.72
8074 15960 1.493772 TTGCTACTGTACGCACACAC 58.506 50.000 10.18 0.00 35.60 3.82
8110 16001 8.979574 AGCAGAATACGATAACAAAGTATAAGC 58.020 33.333 0.00 0.00 31.57 3.09
8181 16237 6.016360 ACATTCAAGGTTTGACGATGAAATGA 60.016 34.615 9.33 0.00 39.87 2.57
8190 16246 9.916397 GTATCTATTTACATTCAAGGTTTGACG 57.084 33.333 0.00 0.00 39.87 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.