Multiple sequence alignment - TraesCS1B01G362600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G362600 chr1B 100.000 2690 0 0 1 2690 591235989 591233300 0.000000e+00 4968
1 TraesCS1B01G362600 chr1D 89.864 1401 71 29 656 2015 436217544 436216174 0.000000e+00 1735
2 TraesCS1B01G362600 chr1D 86.355 513 43 9 22 514 436218101 436217596 3.940000e-148 534
3 TraesCS1B01G362600 chr1D 86.364 154 10 7 2454 2606 436215555 436215412 9.970000e-35 158
4 TraesCS1B01G362600 chr1A 86.614 1524 95 58 542 2015 533469504 533468040 0.000000e+00 1583
5 TraesCS1B01G362600 chr1A 83.897 503 50 15 41 516 533469978 533469480 4.080000e-123 451
6 TraesCS1B01G362600 chr7A 80.110 181 26 4 27 197 1495794 1495974 2.810000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G362600 chr1B 591233300 591235989 2689 True 4968 4968 100.000000 1 2690 1 chr1B.!!$R1 2689
1 TraesCS1B01G362600 chr1D 436215412 436218101 2689 True 809 1735 87.527667 22 2606 3 chr1D.!!$R1 2584
2 TraesCS1B01G362600 chr1A 533468040 533469978 1938 True 1017 1583 85.255500 41 2015 2 chr1A.!!$R1 1974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.035343 GTAACCCTTCACCCAGGAGC 60.035 60.0 0.0 0.0 35.71 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2149 0.711782 TGGTAGGCTGGTACCTGGTA 59.288 55.0 19.31 1.49 42.79 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.537793 CGAAAAGCTGTAACCCTTCAC 57.462 47.619 0.00 0.00 0.00 3.18
21 22 2.225727 CGAAAAGCTGTAACCCTTCACC 59.774 50.000 0.00 0.00 0.00 4.02
22 23 2.287977 AAAGCTGTAACCCTTCACCC 57.712 50.000 0.00 0.00 0.00 4.61
23 24 1.145571 AAGCTGTAACCCTTCACCCA 58.854 50.000 0.00 0.00 0.00 4.51
24 25 0.693049 AGCTGTAACCCTTCACCCAG 59.307 55.000 0.00 0.00 0.00 4.45
25 26 0.322546 GCTGTAACCCTTCACCCAGG 60.323 60.000 0.00 0.00 0.00 4.45
26 27 1.358152 CTGTAACCCTTCACCCAGGA 58.642 55.000 0.00 0.00 35.71 3.86
27 28 1.279271 CTGTAACCCTTCACCCAGGAG 59.721 57.143 0.00 0.00 35.71 3.69
28 29 0.035343 GTAACCCTTCACCCAGGAGC 60.035 60.000 0.00 0.00 35.71 4.70
29 30 0.178873 TAACCCTTCACCCAGGAGCT 60.179 55.000 0.00 0.00 35.71 4.09
30 31 1.783250 AACCCTTCACCCAGGAGCTG 61.783 60.000 0.00 0.00 35.71 4.24
31 32 2.045536 CCTTCACCCAGGAGCTGC 60.046 66.667 0.00 0.00 35.71 5.25
53 54 2.190313 GGGACGCCATCATCAGCA 59.810 61.111 0.00 0.00 0.00 4.41
129 139 4.397730 GTGATGTTACAACCATGTATGCCA 59.602 41.667 0.00 0.00 41.51 4.92
191 201 0.518636 CATGTGAGAGTTGCAACCGG 59.481 55.000 25.62 0.00 0.00 5.28
250 260 3.190849 CGACGACGAGCGGGACTA 61.191 66.667 0.00 0.00 46.49 2.59
287 300 0.178984 TGCATCATCCATGGCCGATT 60.179 50.000 6.96 0.00 32.37 3.34
292 305 0.467844 CATCCATGGCCGATTGGGAA 60.468 55.000 16.64 2.06 38.47 3.97
315 328 3.564455 GGCCTTCCGTACTACATCG 57.436 57.895 0.00 0.00 0.00 3.84
323 336 1.607148 CCGTACTACATCGATGGCTGA 59.393 52.381 28.09 9.07 0.00 4.26
389 418 1.808343 GCGTCGTTGGGGATTTTTACT 59.192 47.619 0.00 0.00 0.00 2.24
422 451 5.360144 CGAGGGAGAGAGATGGTTAAGTTTA 59.640 44.000 0.00 0.00 0.00 2.01
449 478 2.044650 ACCGGCGCCTAGTAGTGA 60.045 61.111 26.68 0.00 0.00 3.41
476 512 7.495279 CCATTTTTGTTTGAACTTGAATCCTCA 59.505 33.333 0.00 0.00 0.00 3.86
502 538 5.816777 ACTTTCAATGGTTTCAATGGTGTTG 59.183 36.000 0.00 0.00 0.00 3.33
509 545 5.674525 TGGTTTCAATGGTGTTGCATTTTA 58.325 33.333 0.00 0.00 0.00 1.52
512 548 7.284034 TGGTTTCAATGGTGTTGCATTTTATTT 59.716 29.630 0.00 0.00 0.00 1.40
600 636 3.025978 CAATGGTGTTACATGGATGGCT 58.974 45.455 0.00 0.00 0.00 4.75
601 637 2.418368 TGGTGTTACATGGATGGCTC 57.582 50.000 0.00 0.00 0.00 4.70
602 638 1.632920 TGGTGTTACATGGATGGCTCA 59.367 47.619 0.00 0.00 0.00 4.26
603 639 2.017049 GGTGTTACATGGATGGCTCAC 58.983 52.381 0.00 0.00 0.00 3.51
604 640 2.617788 GGTGTTACATGGATGGCTCACA 60.618 50.000 0.00 0.00 32.01 3.58
605 641 2.679837 GTGTTACATGGATGGCTCACAG 59.320 50.000 0.00 0.00 0.00 3.66
648 684 0.960364 CCACCCGTGGTCATTTCCAG 60.960 60.000 5.66 0.00 45.53 3.86
670 722 1.600636 CCAGCGTTTGGGCTCTGAA 60.601 57.895 0.64 0.00 42.53 3.02
673 725 0.250901 AGCGTTTGGGCTCTGAATGT 60.251 50.000 0.00 0.00 39.61 2.71
723 782 2.034879 CGTCCATCCGTTGCTTGCT 61.035 57.895 0.00 0.00 0.00 3.91
724 783 1.577328 CGTCCATCCGTTGCTTGCTT 61.577 55.000 0.00 0.00 0.00 3.91
742 801 0.601841 TTTTGCTTCCCGTCGACTCC 60.602 55.000 14.70 0.00 0.00 3.85
751 810 1.744368 CGTCGACTCCTTCTCGGGA 60.744 63.158 14.70 0.00 0.00 5.14
1202 1276 1.369568 GTAACAAACCACGCCGCAC 60.370 57.895 0.00 0.00 0.00 5.34
1203 1277 1.818363 TAACAAACCACGCCGCACA 60.818 52.632 0.00 0.00 0.00 4.57
1205 1279 4.622456 CAAACCACGCCGCACACC 62.622 66.667 0.00 0.00 0.00 4.16
1232 1326 4.601084 TCCTTGTTTACTCTCCTCGATCT 58.399 43.478 0.00 0.00 0.00 2.75
1233 1327 4.399618 TCCTTGTTTACTCTCCTCGATCTG 59.600 45.833 0.00 0.00 0.00 2.90
1242 1348 4.524714 ACTCTCCTCGATCTGTTTTCTTGA 59.475 41.667 0.00 0.00 0.00 3.02
1243 1349 5.011125 ACTCTCCTCGATCTGTTTTCTTGAA 59.989 40.000 0.00 0.00 0.00 2.69
1386 1495 2.928396 ACCTACAAGGCCAGCGGT 60.928 61.111 5.01 4.73 39.63 5.68
1691 1800 1.006571 TCGTCGTTGGGTTCTGAGC 60.007 57.895 0.00 0.00 0.00 4.26
1700 1809 0.957888 GGGTTCTGAGCTCCTGTTGC 60.958 60.000 12.15 0.00 0.00 4.17
1703 1812 0.761187 TTCTGAGCTCCTGTTGCTGT 59.239 50.000 12.15 0.00 41.30 4.40
1719 1832 5.013704 TGTTGCTGTTTAGGATCTTAGGGAA 59.986 40.000 0.00 0.00 0.00 3.97
1752 1865 6.730977 TGATTAGGCTCTAGTTATTATGGGCT 59.269 38.462 0.00 0.00 0.00 5.19
1755 1868 5.870706 AGGCTCTAGTTATTATGGGCTTTC 58.129 41.667 0.00 0.00 0.00 2.62
1803 1919 7.825331 TTCTGTCTGTAGAAGAAGAAGAAGA 57.175 36.000 0.00 0.00 36.40 2.87
1804 1920 7.825331 TCTGTCTGTAGAAGAAGAAGAAGAA 57.175 36.000 0.00 0.00 36.40 2.52
1806 1922 7.721842 TCTGTCTGTAGAAGAAGAAGAAGAAGA 59.278 37.037 0.00 0.00 36.40 2.87
1807 1923 8.239038 TGTCTGTAGAAGAAGAAGAAGAAGAA 57.761 34.615 0.00 0.00 36.40 2.52
1808 1924 8.356657 TGTCTGTAGAAGAAGAAGAAGAAGAAG 58.643 37.037 0.00 0.00 36.40 2.85
1809 1925 8.573035 GTCTGTAGAAGAAGAAGAAGAAGAAGA 58.427 37.037 0.00 0.00 36.40 2.87
1811 1927 9.357652 CTGTAGAAGAAGAAGAAGAAGAAGATG 57.642 37.037 0.00 0.00 0.00 2.90
1812 1928 8.310382 TGTAGAAGAAGAAGAAGAAGAAGATGG 58.690 37.037 0.00 0.00 0.00 3.51
1813 1929 6.172630 AGAAGAAGAAGAAGAAGAAGATGGC 58.827 40.000 0.00 0.00 0.00 4.40
1824 1940 2.246719 GAAGATGGCTTCTGGCGTAT 57.753 50.000 3.39 0.00 45.62 3.06
1829 1945 2.148916 TGGCTTCTGGCGTATAATCG 57.851 50.000 0.00 0.00 42.94 3.34
1832 1948 2.545113 GGCTTCTGGCGTATAATCGTCA 60.545 50.000 0.00 0.00 43.08 4.35
1834 1950 3.554324 GCTTCTGGCGTATAATCGTCAAA 59.446 43.478 0.00 0.00 44.55 2.69
1879 1995 8.357402 TGATCTGATATGGCAATTTTTGAGATG 58.643 33.333 0.00 0.00 0.00 2.90
1895 2011 9.965824 TTTTTGAGATGTCAAGATTTCTTAACC 57.034 29.630 5.34 0.00 43.66 2.85
1899 2015 6.784031 AGATGTCAAGATTTCTTAACCTGGT 58.216 36.000 0.00 0.00 34.28 4.00
1900 2016 7.234355 AGATGTCAAGATTTCTTAACCTGGTT 58.766 34.615 17.44 17.44 34.28 3.67
1918 2034 4.602995 TGGTTGTGCTGTTTATTTTCGTC 58.397 39.130 0.00 0.00 0.00 4.20
1971 2100 0.534877 TTGGCTGCACCTGTACTGTG 60.535 55.000 0.50 10.59 40.22 3.66
1972 2101 1.672356 GGCTGCACCTGTACTGTGG 60.672 63.158 15.00 8.01 34.27 4.17
1973 2102 1.071471 GCTGCACCTGTACTGTGGT 59.929 57.895 15.00 8.54 36.96 4.16
1974 2103 0.951040 GCTGCACCTGTACTGTGGTC 60.951 60.000 15.00 6.87 33.75 4.02
1975 2104 0.681733 CTGCACCTGTACTGTGGTCT 59.318 55.000 15.00 0.00 33.75 3.85
1976 2105 0.392706 TGCACCTGTACTGTGGTCTG 59.607 55.000 15.00 3.51 33.75 3.51
1977 2106 0.393077 GCACCTGTACTGTGGTCTGT 59.607 55.000 15.00 0.00 33.75 3.41
1978 2107 1.616865 GCACCTGTACTGTGGTCTGTA 59.383 52.381 15.00 0.00 33.75 2.74
1979 2108 2.352814 GCACCTGTACTGTGGTCTGTAG 60.353 54.545 15.00 2.37 33.75 2.74
1993 2122 4.462834 TGGTCTGTAGGTCTGTAACTGATG 59.537 45.833 0.00 0.00 0.00 3.07
2015 2144 4.794762 TGAATTGATACGAGTAAACGACGG 59.205 41.667 0.00 0.00 37.03 4.79
2016 2145 3.829886 TTGATACGAGTAAACGACGGT 57.170 42.857 0.00 0.00 37.03 4.83
2018 2147 2.159531 TGATACGAGTAAACGACGGTGG 60.160 50.000 0.00 0.00 37.03 4.61
2020 2149 1.080974 CGAGTAAACGACGGTGGCT 60.081 57.895 0.00 0.00 35.09 4.75
2021 2150 0.168788 CGAGTAAACGACGGTGGCTA 59.831 55.000 0.00 0.00 35.09 3.93
2022 2151 1.622232 GAGTAAACGACGGTGGCTAC 58.378 55.000 0.00 0.00 0.00 3.58
2032 2161 1.905512 GGTGGCTACCAGGTACCAG 59.094 63.158 15.42 5.89 46.71 4.00
2034 2163 2.908796 GGCTACCAGGTACCAGCC 59.091 66.667 21.57 21.57 46.21 4.85
2035 2164 4.051932 GCTACCAGGTACCAGCCT 57.948 61.111 15.94 0.00 39.99 4.58
2037 2166 0.751452 GCTACCAGGTACCAGCCTAC 59.249 60.000 15.94 0.00 37.04 3.18
2038 2167 1.411041 CTACCAGGTACCAGCCTACC 58.589 60.000 15.94 0.00 37.04 3.18
2039 2168 0.711782 TACCAGGTACCAGCCTACCA 59.288 55.000 15.94 0.00 39.05 3.25
2040 2169 0.908180 ACCAGGTACCAGCCTACCAC 60.908 60.000 15.94 0.00 39.05 4.16
2041 2170 0.907704 CCAGGTACCAGCCTACCACA 60.908 60.000 15.94 0.00 39.05 4.17
2042 2171 1.204146 CAGGTACCAGCCTACCACAT 58.796 55.000 15.94 0.00 39.05 3.21
2043 2172 2.394632 CAGGTACCAGCCTACCACATA 58.605 52.381 15.94 0.00 39.05 2.29
2044 2173 2.365617 CAGGTACCAGCCTACCACATAG 59.634 54.545 15.94 0.00 39.05 2.23
2050 2179 4.438346 CCTACCACATAGGCGCAC 57.562 61.111 10.83 0.00 44.36 5.34
2051 2180 1.520192 CCTACCACATAGGCGCACA 59.480 57.895 10.83 0.00 44.36 4.57
2052 2181 0.530650 CCTACCACATAGGCGCACAG 60.531 60.000 10.83 0.00 44.36 3.66
2053 2182 0.459899 CTACCACATAGGCGCACAGA 59.540 55.000 10.83 0.00 43.14 3.41
2054 2183 0.459899 TACCACATAGGCGCACAGAG 59.540 55.000 10.83 0.00 43.14 3.35
2055 2184 2.176273 CCACATAGGCGCACAGAGC 61.176 63.158 10.83 0.00 40.87 4.09
2056 2185 1.448365 CACATAGGCGCACAGAGCA 60.448 57.895 10.83 0.00 46.13 4.26
2057 2186 1.448540 ACATAGGCGCACAGAGCAC 60.449 57.895 10.83 0.00 46.13 4.40
2058 2187 1.448365 CATAGGCGCACAGAGCACA 60.448 57.895 10.83 0.00 46.13 4.57
2059 2188 1.153489 ATAGGCGCACAGAGCACAG 60.153 57.895 10.83 0.00 46.13 3.66
2060 2189 2.584261 ATAGGCGCACAGAGCACAGG 62.584 60.000 10.83 0.00 46.13 4.00
2061 2190 4.687215 GGCGCACAGAGCACAGGA 62.687 66.667 10.83 0.00 46.13 3.86
2062 2191 3.418068 GCGCACAGAGCACAGGAC 61.418 66.667 0.30 0.00 46.13 3.85
2063 2192 2.029518 CGCACAGAGCACAGGACA 59.970 61.111 0.00 0.00 46.13 4.02
2064 2193 1.595109 CGCACAGAGCACAGGACAA 60.595 57.895 0.00 0.00 46.13 3.18
2065 2194 1.159713 CGCACAGAGCACAGGACAAA 61.160 55.000 0.00 0.00 46.13 2.83
2066 2195 0.590195 GCACAGAGCACAGGACAAAG 59.410 55.000 0.00 0.00 44.79 2.77
2067 2196 1.959042 CACAGAGCACAGGACAAAGT 58.041 50.000 0.00 0.00 0.00 2.66
2068 2197 2.292267 CACAGAGCACAGGACAAAGTT 58.708 47.619 0.00 0.00 0.00 2.66
2076 2205 2.032550 CACAGGACAAAGTTGAGCACTG 59.967 50.000 0.00 0.00 35.12 3.66
2113 2248 3.862991 TCGCCGGTGTGGTCCAAA 61.863 61.111 16.01 0.00 41.21 3.28
2120 2255 0.668535 GGTGTGGTCCAAAGTTGAGC 59.331 55.000 0.00 0.00 0.00 4.26
2124 2259 1.334869 GTGGTCCAAAGTTGAGCACTG 59.665 52.381 14.86 0.00 42.11 3.66
2125 2260 0.954452 GGTCCAAAGTTGAGCACTGG 59.046 55.000 0.00 0.00 35.12 4.00
2126 2261 1.476833 GGTCCAAAGTTGAGCACTGGA 60.477 52.381 0.00 0.00 35.12 3.86
2127 2262 1.604278 GTCCAAAGTTGAGCACTGGAC 59.396 52.381 6.44 6.44 39.95 4.02
2128 2263 1.211703 TCCAAAGTTGAGCACTGGACA 59.788 47.619 0.00 0.00 35.12 4.02
2132 2267 0.833287 AGTTGAGCACTGGACACACT 59.167 50.000 0.00 0.00 32.83 3.55
2160 2295 4.965814 TGCATTCCAGTTGGCAATTTTAA 58.034 34.783 1.92 0.00 32.54 1.52
2163 2298 5.238214 GCATTCCAGTTGGCAATTTTAACAA 59.762 36.000 1.92 0.00 34.44 2.83
2166 2301 3.812609 CCAGTTGGCAATTTTAACAACCC 59.187 43.478 1.92 0.00 43.02 4.11
2169 2304 5.355350 CAGTTGGCAATTTTAACAACCCAAA 59.645 36.000 1.92 0.00 43.02 3.28
2170 2305 5.588246 AGTTGGCAATTTTAACAACCCAAAG 59.412 36.000 1.92 0.00 43.02 2.77
2172 2309 5.501156 TGGCAATTTTAACAACCCAAAGTT 58.499 33.333 0.00 0.00 40.16 2.66
2204 2341 6.994421 ACATTAACCTCCCAAAGACAATTT 57.006 33.333 0.00 0.00 0.00 1.82
2207 2347 9.100197 ACATTAACCTCCCAAAGACAATTTAAT 57.900 29.630 0.00 0.00 0.00 1.40
2213 2353 6.380846 CCTCCCAAAGACAATTTAATCATCCA 59.619 38.462 0.00 0.00 0.00 3.41
2216 2356 8.824783 TCCCAAAGACAATTTAATCATCCAAAT 58.175 29.630 0.00 0.00 0.00 2.32
2230 2370 6.982160 TCATCCAAATTTAATCTCCCATGG 57.018 37.500 4.14 4.14 0.00 3.66
2231 2371 6.681538 TCATCCAAATTTAATCTCCCATGGA 58.318 36.000 15.22 0.00 39.79 3.41
2232 2372 7.307550 TCATCCAAATTTAATCTCCCATGGAT 58.692 34.615 15.22 0.00 44.92 3.41
2233 2373 7.452501 TCATCCAAATTTAATCTCCCATGGATC 59.547 37.037 15.22 0.00 42.84 3.36
2234 2374 6.925934 TCCAAATTTAATCTCCCATGGATCT 58.074 36.000 15.22 0.00 31.12 2.75
2235 2375 7.364627 TCCAAATTTAATCTCCCATGGATCTT 58.635 34.615 15.22 3.73 31.12 2.40
2236 2376 7.845800 TCCAAATTTAATCTCCCATGGATCTTT 59.154 33.333 15.22 4.29 31.12 2.52
2237 2377 8.488668 CCAAATTTAATCTCCCATGGATCTTTT 58.511 33.333 15.22 2.81 0.00 2.27
2257 2397 8.261492 TCTTTTAAACAAATGAAGCTTTGCAA 57.739 26.923 0.00 0.00 39.26 4.08
2258 2398 8.891720 TCTTTTAAACAAATGAAGCTTTGCAAT 58.108 25.926 0.00 0.00 39.26 3.56
2260 2400 9.928236 TTTTAAACAAATGAAGCTTTGCAATAC 57.072 25.926 0.00 0.00 39.26 1.89
2264 2404 6.980593 ACAAATGAAGCTTTGCAATACAGTA 58.019 32.000 0.00 0.00 39.26 2.74
2266 2406 5.567138 ATGAAGCTTTGCAATACAGTACC 57.433 39.130 0.00 0.00 0.00 3.34
2268 2408 1.737793 AGCTTTGCAATACAGTACCGC 59.262 47.619 0.00 0.00 0.00 5.68
2269 2409 1.737793 GCTTTGCAATACAGTACCGCT 59.262 47.619 0.00 0.00 0.00 5.52
2270 2410 2.161609 GCTTTGCAATACAGTACCGCTT 59.838 45.455 0.00 0.00 0.00 4.68
2271 2411 3.727970 GCTTTGCAATACAGTACCGCTTC 60.728 47.826 0.00 0.00 0.00 3.86
2272 2412 2.753055 TGCAATACAGTACCGCTTCA 57.247 45.000 5.00 0.00 0.00 3.02
2273 2413 2.616960 TGCAATACAGTACCGCTTCAG 58.383 47.619 5.00 0.00 0.00 3.02
2274 2414 1.933853 GCAATACAGTACCGCTTCAGG 59.066 52.381 0.00 0.00 37.30 3.86
2275 2415 1.933853 CAATACAGTACCGCTTCAGGC 59.066 52.381 0.00 0.00 37.64 4.85
2276 2416 1.191535 ATACAGTACCGCTTCAGGCA 58.808 50.000 0.00 0.00 41.91 4.75
2277 2417 1.191535 TACAGTACCGCTTCAGGCAT 58.808 50.000 0.00 0.00 41.91 4.40
2278 2418 0.391661 ACAGTACCGCTTCAGGCATG 60.392 55.000 0.00 0.00 41.91 4.06
2279 2419 1.450312 AGTACCGCTTCAGGCATGC 60.450 57.895 9.90 9.90 41.91 4.06
2281 2421 3.697439 TACCGCTTCAGGCATGCCC 62.697 63.158 33.14 16.26 41.91 5.36
2284 2424 4.453892 GCTTCAGGCATGCCCCCT 62.454 66.667 33.14 12.66 41.35 4.79
2285 2425 3.060614 GCTTCAGGCATGCCCCCTA 62.061 63.158 33.14 14.98 41.35 3.53
2286 2426 1.614711 CTTCAGGCATGCCCCCTAA 59.385 57.895 33.14 19.58 36.58 2.69
2287 2427 0.033208 CTTCAGGCATGCCCCCTAAA 60.033 55.000 33.14 17.86 36.58 1.85
2290 2430 1.043022 CAGGCATGCCCCCTAAATTC 58.957 55.000 33.14 3.98 36.58 2.17
2291 2431 0.636101 AGGCATGCCCCCTAAATTCA 59.364 50.000 33.14 0.00 36.58 2.57
2292 2432 1.221265 AGGCATGCCCCCTAAATTCAT 59.779 47.619 33.14 7.02 36.58 2.57
2293 2433 2.049372 GGCATGCCCCCTAAATTCATT 58.951 47.619 27.24 0.00 0.00 2.57
2296 2436 4.102367 GGCATGCCCCCTAAATTCATTTTA 59.898 41.667 27.24 0.00 0.00 1.52
2297 2437 5.056480 GCATGCCCCCTAAATTCATTTTAC 58.944 41.667 6.36 0.00 0.00 2.01
2299 2439 6.688666 GCATGCCCCCTAAATTCATTTTACAT 60.689 38.462 6.36 0.00 0.00 2.29
2301 2441 7.979786 TGCCCCCTAAATTCATTTTACATTA 57.020 32.000 0.00 0.00 0.00 1.90
2302 2442 8.380742 TGCCCCCTAAATTCATTTTACATTAA 57.619 30.769 0.00 0.00 0.00 1.40
2303 2443 8.261522 TGCCCCCTAAATTCATTTTACATTAAC 58.738 33.333 0.00 0.00 0.00 2.01
2304 2444 7.713507 GCCCCCTAAATTCATTTTACATTAACC 59.286 37.037 0.00 0.00 0.00 2.85
2305 2445 8.208224 CCCCCTAAATTCATTTTACATTAACCC 58.792 37.037 0.00 0.00 0.00 4.11
2307 2447 8.208224 CCCTAAATTCATTTTACATTAACCCCC 58.792 37.037 0.00 0.00 0.00 5.40
2322 2462 3.986970 CCCCCAAAAGTTGTTCTGC 57.013 52.632 0.00 0.00 0.00 4.26
2323 2463 1.413118 CCCCCAAAAGTTGTTCTGCT 58.587 50.000 0.00 0.00 0.00 4.24
2337 2712 4.432712 TGTTCTGCTTTTTGCTTTTCCTC 58.567 39.130 0.00 0.00 43.37 3.71
2340 2715 3.953612 TCTGCTTTTTGCTTTTCCTCTCA 59.046 39.130 0.00 0.00 43.37 3.27
2341 2716 4.045636 TGCTTTTTGCTTTTCCTCTCAC 57.954 40.909 0.00 0.00 43.37 3.51
2342 2717 3.446873 TGCTTTTTGCTTTTCCTCTCACA 59.553 39.130 0.00 0.00 43.37 3.58
2343 2718 4.081752 TGCTTTTTGCTTTTCCTCTCACAA 60.082 37.500 0.00 0.00 43.37 3.33
2346 2721 5.659440 TTTTGCTTTTCCTCTCACAAAGT 57.341 34.783 0.00 0.00 31.29 2.66
2362 2754 6.291377 TCACAAAGTTTATCTGCAGAGAAGT 58.709 36.000 21.91 17.62 0.00 3.01
2363 2755 7.441836 TCACAAAGTTTATCTGCAGAGAAGTA 58.558 34.615 21.91 7.57 0.00 2.24
2370 2762 3.026630 TCTGCAGAGAAGTAACAACCG 57.973 47.619 13.74 0.00 0.00 4.44
2373 2765 2.067013 GCAGAGAAGTAACAACCGGTC 58.933 52.381 8.04 0.00 0.00 4.79
2377 2769 4.152402 CAGAGAAGTAACAACCGGTCATTG 59.848 45.833 8.04 5.13 0.00 2.82
2378 2770 2.812011 AGAAGTAACAACCGGTCATTGC 59.188 45.455 8.04 9.25 0.00 3.56
2386 2778 1.742761 ACCGGTCATTGCAAGAGATG 58.257 50.000 0.00 0.00 0.00 2.90
2401 2793 5.877031 CAAGAGATGCCACAAGTTATTCTG 58.123 41.667 0.00 0.00 0.00 3.02
2402 2794 3.944015 AGAGATGCCACAAGTTATTCTGC 59.056 43.478 0.00 0.00 0.00 4.26
2403 2795 3.944015 GAGATGCCACAAGTTATTCTGCT 59.056 43.478 0.00 0.00 0.00 4.24
2404 2796 3.944015 AGATGCCACAAGTTATTCTGCTC 59.056 43.478 0.00 0.00 0.00 4.26
2405 2797 3.423539 TGCCACAAGTTATTCTGCTCT 57.576 42.857 0.00 0.00 0.00 4.09
2406 2798 3.754965 TGCCACAAGTTATTCTGCTCTT 58.245 40.909 0.00 0.00 0.00 2.85
2407 2799 4.144297 TGCCACAAGTTATTCTGCTCTTT 58.856 39.130 0.00 0.00 0.00 2.52
2408 2800 4.022935 TGCCACAAGTTATTCTGCTCTTTG 60.023 41.667 0.00 0.00 0.00 2.77
2411 2803 4.217118 CACAAGTTATTCTGCTCTTTGGCT 59.783 41.667 0.00 0.00 0.00 4.75
2412 2804 5.412594 CACAAGTTATTCTGCTCTTTGGCTA 59.587 40.000 0.00 0.00 0.00 3.93
2413 2805 6.003950 ACAAGTTATTCTGCTCTTTGGCTAA 58.996 36.000 0.00 0.00 0.00 3.09
2415 2807 7.177392 ACAAGTTATTCTGCTCTTTGGCTAATT 59.823 33.333 0.00 0.00 0.00 1.40
2416 2808 7.326968 AGTTATTCTGCTCTTTGGCTAATTC 57.673 36.000 0.00 0.00 0.00 2.17
2417 2809 6.319911 AGTTATTCTGCTCTTTGGCTAATTCC 59.680 38.462 0.00 0.00 0.00 3.01
2418 2810 3.719268 TCTGCTCTTTGGCTAATTCCA 57.281 42.857 0.00 0.00 0.00 3.53
2419 2811 4.240881 TCTGCTCTTTGGCTAATTCCAT 57.759 40.909 0.00 0.00 35.77 3.41
2420 2812 4.603131 TCTGCTCTTTGGCTAATTCCATT 58.397 39.130 0.00 0.00 35.77 3.16
2421 2813 5.018809 TCTGCTCTTTGGCTAATTCCATTT 58.981 37.500 0.00 0.00 35.77 2.32
2422 2814 5.075858 TGCTCTTTGGCTAATTCCATTTG 57.924 39.130 0.00 0.00 35.77 2.32
2423 2815 4.081531 TGCTCTTTGGCTAATTCCATTTGG 60.082 41.667 0.00 0.00 35.77 3.28
2424 2816 4.081476 GCTCTTTGGCTAATTCCATTTGGT 60.081 41.667 0.00 0.00 35.77 3.67
2425 2817 5.654497 CTCTTTGGCTAATTCCATTTGGTC 58.346 41.667 0.00 0.00 35.77 4.02
2426 2818 4.157656 TCTTTGGCTAATTCCATTTGGTCG 59.842 41.667 0.00 0.00 35.77 4.79
2427 2819 1.748493 TGGCTAATTCCATTTGGTCGC 59.252 47.619 0.00 0.00 36.34 5.19
2428 2820 1.748493 GGCTAATTCCATTTGGTCGCA 59.252 47.619 0.00 0.00 36.34 5.10
2429 2821 2.362077 GGCTAATTCCATTTGGTCGCAT 59.638 45.455 0.00 0.00 36.34 4.73
2430 2822 3.374745 GCTAATTCCATTTGGTCGCATG 58.625 45.455 0.00 0.00 36.34 4.06
2431 2823 3.066621 GCTAATTCCATTTGGTCGCATGA 59.933 43.478 0.00 0.00 36.34 3.07
2432 2824 4.439974 GCTAATTCCATTTGGTCGCATGAA 60.440 41.667 0.00 0.00 36.34 2.57
2433 2825 3.508744 ATTCCATTTGGTCGCATGAAC 57.491 42.857 0.00 0.00 36.34 3.18
2434 2826 0.801872 TCCATTTGGTCGCATGAACG 59.198 50.000 0.00 0.00 33.14 3.95
2435 2827 0.179166 CCATTTGGTCGCATGAACGG 60.179 55.000 0.00 0.00 33.14 4.44
2436 2828 0.801872 CATTTGGTCGCATGAACGGA 59.198 50.000 0.00 0.00 33.14 4.69
2437 2829 1.086696 ATTTGGTCGCATGAACGGAG 58.913 50.000 0.00 0.00 33.14 4.63
2438 2830 0.034198 TTTGGTCGCATGAACGGAGA 59.966 50.000 0.00 0.00 33.14 3.71
2439 2831 0.669318 TTGGTCGCATGAACGGAGAC 60.669 55.000 0.00 0.00 33.14 3.36
2440 2832 1.080093 GGTCGCATGAACGGAGACA 60.080 57.895 0.00 0.00 36.89 3.41
2441 2833 0.460284 GGTCGCATGAACGGAGACAT 60.460 55.000 0.00 0.00 36.89 3.06
2442 2834 0.647410 GTCGCATGAACGGAGACATG 59.353 55.000 0.00 0.00 43.55 3.21
2443 2835 0.530288 TCGCATGAACGGAGACATGA 59.470 50.000 0.00 0.00 43.46 3.07
2444 2836 0.926155 CGCATGAACGGAGACATGAG 59.074 55.000 0.00 0.00 43.46 2.90
2445 2837 0.654683 GCATGAACGGAGACATGAGC 59.345 55.000 0.00 0.00 43.46 4.26
2446 2838 0.926155 CATGAACGGAGACATGAGCG 59.074 55.000 0.00 0.00 43.46 5.03
2447 2839 0.807667 ATGAACGGAGACATGAGCGC 60.808 55.000 0.00 0.00 0.00 5.92
2448 2840 1.446099 GAACGGAGACATGAGCGCA 60.446 57.895 11.47 0.00 0.00 6.09
2449 2841 1.687494 GAACGGAGACATGAGCGCAC 61.687 60.000 11.47 3.13 0.00 5.34
2450 2842 2.125952 CGGAGACATGAGCGCACA 60.126 61.111 10.65 10.65 0.00 4.57
2451 2843 1.520120 CGGAGACATGAGCGCACAT 60.520 57.895 14.92 14.92 0.00 3.21
2463 2855 1.138337 GCGCACATGATGTTTTGCAA 58.862 45.000 0.30 0.00 34.49 4.08
2469 2861 5.390040 CGCACATGATGTTTTGCAATGATTT 60.390 36.000 0.00 0.00 34.49 2.17
2471 2863 6.566942 GCACATGATGTTTTGCAATGATTTGT 60.567 34.615 0.00 0.00 35.17 2.83
2472 2864 7.360185 GCACATGATGTTTTGCAATGATTTGTA 60.360 33.333 0.00 0.00 35.17 2.41
2473 2865 7.953173 CACATGATGTTTTGCAATGATTTGTAC 59.047 33.333 0.00 0.00 35.17 2.90
2485 2877 7.381948 TGCAATGATTTGTACTAACAAGCAAAG 59.618 33.333 13.87 0.00 45.99 2.77
2492 2884 2.784347 ACTAACAAGCAAAGCCTCCTC 58.216 47.619 0.00 0.00 0.00 3.71
2495 2887 0.321122 ACAAGCAAAGCCTCCTCGAG 60.321 55.000 5.13 5.13 0.00 4.04
2505 2897 1.464734 CCTCCTCGAGAGTTGCAGTA 58.535 55.000 15.71 0.00 41.47 2.74
2507 2899 2.159310 CCTCCTCGAGAGTTGCAGTAAG 60.159 54.545 15.71 0.00 41.47 2.34
2508 2900 2.750166 CTCCTCGAGAGTTGCAGTAAGA 59.250 50.000 15.71 0.00 37.87 2.10
2509 2901 2.488545 TCCTCGAGAGTTGCAGTAAGAC 59.511 50.000 15.71 0.00 0.00 3.01
2510 2902 2.229062 CCTCGAGAGTTGCAGTAAGACA 59.771 50.000 15.71 0.00 0.00 3.41
2511 2903 3.305403 CCTCGAGAGTTGCAGTAAGACAA 60.305 47.826 15.71 0.00 0.00 3.18
2532 2924 7.283127 AGACAAGCATCTAAAAACAAGAGTTGA 59.717 33.333 0.00 0.00 38.17 3.18
2533 2925 7.771183 ACAAGCATCTAAAAACAAGAGTTGAA 58.229 30.769 0.00 0.00 38.17 2.69
2542 2934 7.454260 AAAAACAAGAGTTGAAGTCAGAGTT 57.546 32.000 2.50 1.54 38.17 3.01
2543 2935 7.454260 AAAACAAGAGTTGAAGTCAGAGTTT 57.546 32.000 2.50 7.11 38.17 2.66
2544 2936 6.670077 AACAAGAGTTGAAGTCAGAGTTTC 57.330 37.500 2.50 0.00 36.39 2.78
2580 2972 2.821378 TCAGGTGCACCAGATTGAAATG 59.179 45.455 36.39 22.02 38.89 2.32
2589 2981 3.386726 ACCAGATTGAAATGCATGGATGG 59.613 43.478 0.00 4.96 0.00 3.51
2590 2982 3.390135 CAGATTGAAATGCATGGATGGC 58.610 45.455 0.00 0.00 0.00 4.40
2591 2983 3.069586 CAGATTGAAATGCATGGATGGCT 59.930 43.478 0.00 0.00 0.00 4.75
2592 2984 2.971660 TTGAAATGCATGGATGGCTG 57.028 45.000 0.00 0.00 0.00 4.85
2606 2998 1.144716 GGCTGCTGATCACGGATCA 59.855 57.895 13.64 13.64 45.35 2.92
2607 2999 0.462581 GGCTGCTGATCACGGATCAA 60.463 55.000 14.75 4.05 46.51 2.57
2608 3000 1.590932 GCTGCTGATCACGGATCAAT 58.409 50.000 14.75 0.00 46.51 2.57
2609 3001 1.530293 GCTGCTGATCACGGATCAATC 59.470 52.381 14.75 11.00 46.51 2.67
2610 3002 2.830104 CTGCTGATCACGGATCAATCA 58.170 47.619 14.75 13.74 46.51 2.57
2611 3003 2.801111 CTGCTGATCACGGATCAATCAG 59.199 50.000 19.18 19.18 46.51 2.90
2612 3004 2.169144 TGCTGATCACGGATCAATCAGT 59.831 45.455 19.31 0.00 46.51 3.41
2613 3005 2.543012 GCTGATCACGGATCAATCAGTG 59.457 50.000 14.65 14.65 46.51 3.66
2614 3006 3.790091 CTGATCACGGATCAATCAGTGT 58.210 45.455 18.48 9.43 46.51 3.55
2615 3007 3.554731 CTGATCACGGATCAATCAGTGTG 59.445 47.826 18.48 11.17 46.51 3.82
2616 3008 6.019796 CTGATCACGGATCAATCAGTGTGC 62.020 50.000 18.48 13.47 46.51 4.57
2617 3009 1.441738 CACGGATCAATCAGTGTGCA 58.558 50.000 13.14 0.00 44.41 4.57
2618 3010 2.011947 CACGGATCAATCAGTGTGCAT 58.988 47.619 13.14 0.00 44.41 3.96
2619 3011 3.197265 CACGGATCAATCAGTGTGCATA 58.803 45.455 13.14 0.00 44.41 3.14
2620 3012 3.001634 CACGGATCAATCAGTGTGCATAC 59.998 47.826 5.29 5.29 44.41 2.39
2621 3013 3.197265 CGGATCAATCAGTGTGCATACA 58.803 45.455 16.44 0.00 0.00 2.29
2622 3014 3.811497 CGGATCAATCAGTGTGCATACAT 59.189 43.478 16.44 0.00 39.39 2.29
2623 3015 4.084171 CGGATCAATCAGTGTGCATACATC 60.084 45.833 16.44 8.35 39.39 3.06
2624 3016 4.084171 GGATCAATCAGTGTGCATACATCG 60.084 45.833 16.44 4.00 39.39 3.84
2625 3017 3.197265 TCAATCAGTGTGCATACATCGG 58.803 45.455 16.44 2.63 39.39 4.18
2626 3018 1.586422 ATCAGTGTGCATACATCGGC 58.414 50.000 16.44 0.00 39.39 5.54
2627 3019 0.461870 TCAGTGTGCATACATCGGCC 60.462 55.000 16.44 0.00 39.39 6.13
2628 3020 0.744057 CAGTGTGCATACATCGGCCA 60.744 55.000 16.44 0.00 39.39 5.36
2629 3021 0.181114 AGTGTGCATACATCGGCCAT 59.819 50.000 16.44 0.00 39.39 4.40
2630 3022 0.588252 GTGTGCATACATCGGCCATC 59.412 55.000 8.93 0.00 39.39 3.51
2631 3023 0.469494 TGTGCATACATCGGCCATCT 59.531 50.000 2.24 0.00 0.00 2.90
2632 3024 1.151668 GTGCATACATCGGCCATCTC 58.848 55.000 2.24 0.00 0.00 2.75
2633 3025 0.035317 TGCATACATCGGCCATCTCC 59.965 55.000 2.24 0.00 0.00 3.71
2634 3026 0.322975 GCATACATCGGCCATCTCCT 59.677 55.000 2.24 0.00 0.00 3.69
2635 3027 1.943046 GCATACATCGGCCATCTCCTG 60.943 57.143 2.24 0.00 0.00 3.86
2636 3028 0.322975 ATACATCGGCCATCTCCTGC 59.677 55.000 2.24 0.00 0.00 4.85
2637 3029 1.758440 TACATCGGCCATCTCCTGCC 61.758 60.000 2.24 0.00 44.41 4.85
2638 3030 3.564218 ATCGGCCATCTCCTGCCC 61.564 66.667 2.24 0.00 45.07 5.36
2640 3032 4.559063 CGGCCATCTCCTGCCCAG 62.559 72.222 2.24 0.00 45.07 4.45
2652 3044 4.459089 GCCCAGGCACTCCGACTC 62.459 72.222 3.12 0.00 41.49 3.36
2653 3045 3.775654 CCCAGGCACTCCGACTCC 61.776 72.222 0.00 0.00 34.60 3.85
2654 3046 4.135153 CCAGGCACTCCGACTCCG 62.135 72.222 0.00 0.00 34.60 4.63
2655 3047 4.803426 CAGGCACTCCGACTCCGC 62.803 72.222 0.00 0.00 34.60 5.54
2657 3049 4.803426 GGCACTCCGACTCCGCTG 62.803 72.222 0.00 0.00 0.00 5.18
2659 3051 3.753434 CACTCCGACTCCGCTGCT 61.753 66.667 0.00 0.00 0.00 4.24
2660 3052 3.753434 ACTCCGACTCCGCTGCTG 61.753 66.667 0.00 0.00 0.00 4.41
2673 3065 2.421314 TGCTGCGCAGTACACAGT 59.579 55.556 35.80 0.00 33.32 3.55
2674 3066 1.227527 TGCTGCGCAGTACACAGTT 60.228 52.632 35.80 0.00 33.32 3.16
2675 3067 1.221466 TGCTGCGCAGTACACAGTTC 61.221 55.000 35.80 17.75 33.32 3.01
2676 3068 1.221466 GCTGCGCAGTACACAGTTCA 61.221 55.000 35.80 0.00 33.87 3.18
2677 3069 0.786581 CTGCGCAGTACACAGTTCAG 59.213 55.000 29.24 0.00 0.00 3.02
2678 3070 0.599991 TGCGCAGTACACAGTTCAGG 60.600 55.000 5.66 0.00 0.00 3.86
2679 3071 1.291877 GCGCAGTACACAGTTCAGGG 61.292 60.000 0.30 0.00 0.00 4.45
2680 3072 1.291877 CGCAGTACACAGTTCAGGGC 61.292 60.000 0.00 0.00 0.00 5.19
2681 3073 1.291877 GCAGTACACAGTTCAGGGCG 61.292 60.000 0.00 0.00 0.00 6.13
2682 3074 0.033504 CAGTACACAGTTCAGGGCGT 59.966 55.000 0.00 0.00 0.00 5.68
2683 3075 0.317479 AGTACACAGTTCAGGGCGTC 59.683 55.000 0.00 0.00 0.00 5.19
2684 3076 1.007336 GTACACAGTTCAGGGCGTCG 61.007 60.000 0.00 0.00 0.00 5.12
2685 3077 1.174078 TACACAGTTCAGGGCGTCGA 61.174 55.000 0.00 0.00 0.00 4.20
2686 3078 1.300620 CACAGTTCAGGGCGTCGAA 60.301 57.895 0.00 0.00 0.00 3.71
2687 3079 1.006102 ACAGTTCAGGGCGTCGAAG 60.006 57.895 0.00 0.00 0.00 3.79
2688 3080 1.738099 CAGTTCAGGGCGTCGAAGG 60.738 63.158 0.00 0.00 0.00 3.46
2689 3081 3.119096 GTTCAGGGCGTCGAAGGC 61.119 66.667 16.44 16.44 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.557056 GGGTGAAGGGTTACAGCTTTTC 59.443 50.000 0.00 0.00 35.30 2.29
3 4 1.497286 TGGGTGAAGGGTTACAGCTTT 59.503 47.619 0.00 0.00 35.30 3.51
5 6 0.693049 CTGGGTGAAGGGTTACAGCT 59.307 55.000 0.00 0.00 35.30 4.24
6 7 0.322546 CCTGGGTGAAGGGTTACAGC 60.323 60.000 0.00 0.00 33.28 4.40
7 8 1.279271 CTCCTGGGTGAAGGGTTACAG 59.721 57.143 0.00 0.00 37.96 2.74
8 9 1.358152 CTCCTGGGTGAAGGGTTACA 58.642 55.000 0.00 0.00 37.96 2.41
9 10 0.035343 GCTCCTGGGTGAAGGGTTAC 60.035 60.000 0.00 0.00 37.96 2.50
10 11 0.178873 AGCTCCTGGGTGAAGGGTTA 60.179 55.000 0.00 0.00 37.96 2.85
11 12 1.464198 AGCTCCTGGGTGAAGGGTT 60.464 57.895 0.00 0.00 37.96 4.11
12 13 2.208349 AGCTCCTGGGTGAAGGGT 59.792 61.111 0.00 0.00 37.96 4.34
13 14 2.673523 CAGCTCCTGGGTGAAGGG 59.326 66.667 0.00 0.00 45.36 3.95
14 15 2.045536 GCAGCTCCTGGGTGAAGG 60.046 66.667 0.00 0.00 45.36 3.46
15 16 1.673665 GTGCAGCTCCTGGGTGAAG 60.674 63.158 0.00 0.00 45.36 3.02
16 17 2.431683 GTGCAGCTCCTGGGTGAA 59.568 61.111 0.00 0.00 45.36 3.18
17 18 3.640407 GGTGCAGCTCCTGGGTGA 61.640 66.667 9.07 0.00 45.36 4.02
31 32 4.175337 ATGATGGCGTCCCCGGTG 62.175 66.667 0.00 0.00 35.87 4.94
35 36 2.592861 GCTGATGATGGCGTCCCC 60.593 66.667 3.88 0.00 0.00 4.81
37 38 1.027357 ATTTGCTGATGATGGCGTCC 58.973 50.000 3.88 0.00 0.00 4.79
39 40 0.101759 GCATTTGCTGATGATGGCGT 59.898 50.000 4.38 0.00 38.21 5.68
53 54 2.346803 CAGTGTACGGCTGTAGCATTT 58.653 47.619 5.39 0.00 44.36 2.32
107 117 4.593956 TGGCATACATGGTTGTAACATCA 58.406 39.130 0.00 0.00 41.51 3.07
129 139 0.874607 GTCGAGTCGGTTGCAACACT 60.875 55.000 29.55 24.16 0.00 3.55
176 186 2.664851 CGCCGGTTGCAACTCTCA 60.665 61.111 27.64 0.00 41.33 3.27
235 245 1.968017 TTGTAGTCCCGCTCGTCGT 60.968 57.895 0.00 0.00 36.19 4.34
287 300 2.754375 GGAAGGCCGAAGTTCCCA 59.246 61.111 9.85 0.00 36.92 4.37
305 318 2.604855 CCGTCAGCCATCGATGTAGTAC 60.605 54.545 23.27 14.43 0.00 2.73
307 320 0.385751 CCGTCAGCCATCGATGTAGT 59.614 55.000 23.27 5.18 0.00 2.73
315 328 3.138930 TAGCTCGCCGTCAGCCATC 62.139 63.158 0.00 0.00 37.63 3.51
389 418 3.997400 CTCTCCCTCGACCCGCTCA 62.997 68.421 0.00 0.00 0.00 4.26
449 478 7.337938 AGGATTCAAGTTCAAACAAAAATGGT 58.662 30.769 0.00 0.00 0.00 3.55
476 512 5.363580 ACACCATTGAAACCATTGAAAGTCT 59.636 36.000 0.00 0.00 0.00 3.24
567 603 9.689976 CATGTAACACCATTGAATTGTCTTAAA 57.310 29.630 0.00 0.00 0.00 1.52
568 604 8.303156 CCATGTAACACCATTGAATTGTCTTAA 58.697 33.333 0.00 0.00 0.00 1.85
569 605 7.667635 TCCATGTAACACCATTGAATTGTCTTA 59.332 33.333 0.00 0.00 0.00 2.10
570 606 6.493115 TCCATGTAACACCATTGAATTGTCTT 59.507 34.615 0.00 0.00 0.00 3.01
571 607 6.009589 TCCATGTAACACCATTGAATTGTCT 58.990 36.000 0.00 0.00 0.00 3.41
572 608 6.266168 TCCATGTAACACCATTGAATTGTC 57.734 37.500 0.00 0.00 0.00 3.18
573 609 6.351202 CCATCCATGTAACACCATTGAATTGT 60.351 38.462 0.00 0.00 0.00 2.71
574 610 6.044046 CCATCCATGTAACACCATTGAATTG 58.956 40.000 0.00 0.00 0.00 2.32
575 611 5.395546 GCCATCCATGTAACACCATTGAATT 60.396 40.000 0.00 0.00 0.00 2.17
589 625 0.986527 TGACTGTGAGCCATCCATGT 59.013 50.000 0.00 0.00 0.00 3.21
600 636 0.249447 CAAGTGCCGAGTGACTGTGA 60.249 55.000 0.00 0.00 0.00 3.58
601 637 0.249447 TCAAGTGCCGAGTGACTGTG 60.249 55.000 0.00 0.00 0.00 3.66
602 638 0.249489 GTCAAGTGCCGAGTGACTGT 60.249 55.000 0.00 0.00 38.87 3.55
603 639 1.278172 CGTCAAGTGCCGAGTGACTG 61.278 60.000 0.00 0.00 39.61 3.51
604 640 1.007271 CGTCAAGTGCCGAGTGACT 60.007 57.895 0.00 0.00 39.61 3.41
605 641 1.004277 CTCGTCAAGTGCCGAGTGAC 61.004 60.000 3.69 0.00 44.14 3.67
723 782 0.601841 GGAGTCGACGGGAAGCAAAA 60.602 55.000 10.46 0.00 0.00 2.44
724 783 1.005394 GGAGTCGACGGGAAGCAAA 60.005 57.895 10.46 0.00 0.00 3.68
769 833 3.364366 GCGATCTTCTGTTTTGGAGTGTG 60.364 47.826 0.00 0.00 0.00 3.82
932 996 4.043200 GCTGCGGGCAGGTGTTTC 62.043 66.667 21.10 0.74 43.77 2.78
981 1045 2.844839 GGAGGAGACCGGGATGGG 60.845 72.222 6.32 0.00 44.64 4.00
1202 1276 4.003648 GAGAGTAAACAAGGATGTGGGTG 58.996 47.826 0.00 0.00 40.46 4.61
1203 1277 3.009143 GGAGAGTAAACAAGGATGTGGGT 59.991 47.826 0.00 0.00 40.46 4.51
1205 1279 4.508662 GAGGAGAGTAAACAAGGATGTGG 58.491 47.826 0.00 0.00 40.46 4.17
1206 1280 4.082190 TCGAGGAGAGTAAACAAGGATGTG 60.082 45.833 0.00 0.00 40.46 3.21
1207 1281 4.087182 TCGAGGAGAGTAAACAAGGATGT 58.913 43.478 0.00 0.00 43.14 3.06
1208 1282 4.720649 TCGAGGAGAGTAAACAAGGATG 57.279 45.455 0.00 0.00 0.00 3.51
1356 1465 3.161450 TAGGTGGCGATGGGGCTC 61.161 66.667 0.00 0.00 42.84 4.70
1645 1754 3.591835 GAGGAGAGCGCCGAGGAG 61.592 72.222 2.29 0.00 0.00 3.69
1667 1776 4.681978 ACCCAACGACGAGCAGCC 62.682 66.667 0.00 0.00 0.00 4.85
1691 1800 4.213564 AGATCCTAAACAGCAACAGGAG 57.786 45.455 0.00 0.00 40.43 3.69
1752 1865 4.825422 CACATCTGTCCTCTAAGCTGAAA 58.175 43.478 0.00 0.00 0.00 2.69
1755 1868 2.168106 AGCACATCTGTCCTCTAAGCTG 59.832 50.000 0.00 0.00 0.00 4.24
1806 1922 3.838244 TTATACGCCAGAAGCCATCTT 57.162 42.857 0.00 0.00 35.73 2.40
1807 1923 3.615110 CGATTATACGCCAGAAGCCATCT 60.615 47.826 0.00 0.00 39.68 2.90
1808 1924 2.668457 CGATTATACGCCAGAAGCCATC 59.332 50.000 0.00 0.00 38.78 3.51
1809 1925 2.037251 ACGATTATACGCCAGAAGCCAT 59.963 45.455 0.00 0.00 38.78 4.40
1811 1927 2.059541 GACGATTATACGCCAGAAGCC 58.940 52.381 0.00 0.00 38.78 4.35
1812 1928 2.739292 TGACGATTATACGCCAGAAGC 58.261 47.619 0.00 0.00 36.70 3.86
1813 1929 4.565166 TGTTTGACGATTATACGCCAGAAG 59.435 41.667 0.00 0.00 36.70 2.85
1853 1969 7.885009 TCTCAAAAATTGCCATATCAGATCA 57.115 32.000 0.00 0.00 0.00 2.92
1863 1979 5.787953 TCTTGACATCTCAAAAATTGCCA 57.212 34.783 0.00 0.00 35.92 4.92
1864 1980 7.601508 AGAAATCTTGACATCTCAAAAATTGCC 59.398 33.333 0.00 0.00 35.92 4.52
1870 1986 9.354673 AGGTTAAGAAATCTTGACATCTCAAAA 57.645 29.630 16.76 0.00 42.24 2.44
1879 1995 6.438763 CACAACCAGGTTAAGAAATCTTGAC 58.561 40.000 3.89 9.01 40.47 3.18
1895 2011 4.606961 ACGAAAATAAACAGCACAACCAG 58.393 39.130 0.00 0.00 0.00 4.00
1918 2034 6.707290 TGGATCCCGTATCACCTTATTTATG 58.293 40.000 9.90 0.00 36.20 1.90
1935 2051 2.101415 GCCAAATAACTTGCTGGATCCC 59.899 50.000 9.90 0.00 33.27 3.85
1971 2100 4.705507 TCATCAGTTACAGACCTACAGACC 59.294 45.833 0.00 0.00 0.00 3.85
1972 2101 5.899120 TCATCAGTTACAGACCTACAGAC 57.101 43.478 0.00 0.00 0.00 3.51
1973 2102 7.178451 TCAATTCATCAGTTACAGACCTACAGA 59.822 37.037 0.00 0.00 0.00 3.41
1974 2103 7.323420 TCAATTCATCAGTTACAGACCTACAG 58.677 38.462 0.00 0.00 0.00 2.74
1975 2104 7.239763 TCAATTCATCAGTTACAGACCTACA 57.760 36.000 0.00 0.00 0.00 2.74
1976 2105 9.250624 GTATCAATTCATCAGTTACAGACCTAC 57.749 37.037 0.00 0.00 0.00 3.18
1977 2106 8.135529 CGTATCAATTCATCAGTTACAGACCTA 58.864 37.037 0.00 0.00 0.00 3.08
1978 2107 6.980978 CGTATCAATTCATCAGTTACAGACCT 59.019 38.462 0.00 0.00 0.00 3.85
1979 2108 6.978659 TCGTATCAATTCATCAGTTACAGACC 59.021 38.462 0.00 0.00 0.00 3.85
1993 2122 4.795278 ACCGTCGTTTACTCGTATCAATTC 59.205 41.667 0.00 0.00 0.00 2.17
2015 2144 1.221021 GCTGGTACCTGGTAGCCAC 59.779 63.158 27.86 18.20 35.90 5.01
2016 2145 3.721868 GCTGGTACCTGGTAGCCA 58.278 61.111 27.86 23.48 35.90 4.75
2018 2147 0.751452 GTAGGCTGGTACCTGGTAGC 59.249 60.000 25.25 25.25 41.34 3.58
2020 2149 0.711782 TGGTAGGCTGGTACCTGGTA 59.288 55.000 19.31 1.49 42.79 3.25
2021 2150 0.908180 GTGGTAGGCTGGTACCTGGT 60.908 60.000 19.31 4.05 42.79 4.00
2022 2151 0.907704 TGTGGTAGGCTGGTACCTGG 60.908 60.000 19.31 10.45 42.79 4.45
2024 2153 2.679082 CTATGTGGTAGGCTGGTACCT 58.321 52.381 14.36 0.00 42.79 3.08
2034 2163 0.459899 TCTGTGCGCCTATGTGGTAG 59.540 55.000 4.18 0.00 38.35 3.18
2035 2164 0.459899 CTCTGTGCGCCTATGTGGTA 59.540 55.000 4.18 0.00 38.35 3.25
2037 2166 2.176273 GCTCTGTGCGCCTATGTGG 61.176 63.158 4.18 0.00 39.35 4.17
2038 2167 1.448365 TGCTCTGTGCGCCTATGTG 60.448 57.895 4.18 0.00 46.63 3.21
2039 2168 1.448540 GTGCTCTGTGCGCCTATGT 60.449 57.895 4.18 0.00 45.73 2.29
2040 2169 3.403277 GTGCTCTGTGCGCCTATG 58.597 61.111 4.18 0.00 45.73 2.23
2046 2175 1.159713 TTTGTCCTGTGCTCTGTGCG 61.160 55.000 0.00 0.00 46.63 5.34
2047 2176 0.590195 CTTTGTCCTGTGCTCTGTGC 59.410 55.000 0.00 0.00 43.25 4.57
2048 2177 1.959042 ACTTTGTCCTGTGCTCTGTG 58.041 50.000 0.00 0.00 0.00 3.66
2049 2178 2.092968 TCAACTTTGTCCTGTGCTCTGT 60.093 45.455 0.00 0.00 0.00 3.41
2050 2179 2.547211 CTCAACTTTGTCCTGTGCTCTG 59.453 50.000 0.00 0.00 0.00 3.35
2051 2180 2.843701 CTCAACTTTGTCCTGTGCTCT 58.156 47.619 0.00 0.00 0.00 4.09
2052 2181 1.265365 GCTCAACTTTGTCCTGTGCTC 59.735 52.381 0.00 0.00 0.00 4.26
2053 2182 1.312815 GCTCAACTTTGTCCTGTGCT 58.687 50.000 0.00 0.00 0.00 4.40
2054 2183 1.024271 TGCTCAACTTTGTCCTGTGC 58.976 50.000 0.00 0.00 0.00 4.57
2055 2184 2.032550 CAGTGCTCAACTTTGTCCTGTG 59.967 50.000 0.00 0.00 36.83 3.66
2056 2185 2.292267 CAGTGCTCAACTTTGTCCTGT 58.708 47.619 0.00 0.00 36.83 4.00
2057 2186 1.605710 CCAGTGCTCAACTTTGTCCTG 59.394 52.381 0.00 0.00 36.83 3.86
2058 2187 1.972872 CCAGTGCTCAACTTTGTCCT 58.027 50.000 0.00 0.00 36.83 3.85
2059 2188 0.312102 GCCAGTGCTCAACTTTGTCC 59.688 55.000 0.00 0.00 36.83 4.02
2060 2189 3.853623 GCCAGTGCTCAACTTTGTC 57.146 52.632 0.00 0.00 36.83 3.18
2102 2237 1.065551 GTGCTCAACTTTGGACCACAC 59.934 52.381 0.00 0.00 0.00 3.82
2113 2248 0.833287 AGTGTGTCCAGTGCTCAACT 59.167 50.000 0.00 0.00 40.93 3.16
2120 2255 1.331756 GCAAACTGAGTGTGTCCAGTG 59.668 52.381 4.46 0.00 42.25 3.66
2124 2259 2.030805 GGAATGCAAACTGAGTGTGTCC 60.031 50.000 4.46 0.00 0.00 4.02
2125 2260 2.618241 TGGAATGCAAACTGAGTGTGTC 59.382 45.455 4.46 0.00 0.00 3.67
2126 2261 2.620115 CTGGAATGCAAACTGAGTGTGT 59.380 45.455 4.46 0.00 0.00 3.72
2127 2262 2.620115 ACTGGAATGCAAACTGAGTGTG 59.380 45.455 0.00 0.00 0.00 3.82
2128 2263 2.936202 ACTGGAATGCAAACTGAGTGT 58.064 42.857 0.00 0.00 0.00 3.55
2132 2267 1.340889 GCCAACTGGAATGCAAACTGA 59.659 47.619 0.00 0.00 37.39 3.41
2177 2314 7.899648 TTGTCTTTGGGAGGTTAATGTAAAA 57.100 32.000 0.00 0.00 0.00 1.52
2181 2318 6.994421 AAATTGTCTTTGGGAGGTTAATGT 57.006 33.333 0.00 0.00 0.00 2.71
2184 2321 8.713708 TGATTAAATTGTCTTTGGGAGGTTAA 57.286 30.769 0.00 0.00 0.00 2.01
2185 2322 8.893563 ATGATTAAATTGTCTTTGGGAGGTTA 57.106 30.769 0.00 0.00 0.00 2.85
2189 2326 7.408756 TGGATGATTAAATTGTCTTTGGGAG 57.591 36.000 0.00 0.00 0.00 4.30
2204 2341 9.092338 CCATGGGAGATTAAATTTGGATGATTA 57.908 33.333 2.85 0.00 0.00 1.75
2207 2347 6.681538 TCCATGGGAGATTAAATTTGGATGA 58.318 36.000 13.02 0.00 0.00 2.92
2216 2356 9.540538 TGTTTAAAAGATCCATGGGAGATTAAA 57.459 29.630 13.02 13.74 34.05 1.52
2218 2358 9.540538 TTTGTTTAAAAGATCCATGGGAGATTA 57.459 29.630 13.02 3.10 34.05 1.75
2226 2366 8.767478 AGCTTCATTTGTTTAAAAGATCCATG 57.233 30.769 0.00 0.00 0.00 3.66
2227 2367 9.783081 AAAGCTTCATTTGTTTAAAAGATCCAT 57.217 25.926 0.00 0.00 0.00 3.41
2228 2368 9.044150 CAAAGCTTCATTTGTTTAAAAGATCCA 57.956 29.630 0.00 0.00 35.80 3.41
2229 2369 8.011673 GCAAAGCTTCATTTGTTTAAAAGATCC 58.988 33.333 0.00 0.00 41.31 3.36
2230 2370 8.550376 TGCAAAGCTTCATTTGTTTAAAAGATC 58.450 29.630 0.00 0.00 41.31 2.75
2231 2371 8.436046 TGCAAAGCTTCATTTGTTTAAAAGAT 57.564 26.923 0.00 0.00 41.31 2.40
2232 2372 7.840342 TGCAAAGCTTCATTTGTTTAAAAGA 57.160 28.000 0.00 0.00 41.31 2.52
2234 2374 9.928236 GTATTGCAAAGCTTCATTTGTTTAAAA 57.072 25.926 1.71 0.00 41.31 1.52
2235 2375 9.102757 TGTATTGCAAAGCTTCATTTGTTTAAA 57.897 25.926 1.71 0.00 41.31 1.52
2236 2376 8.654230 TGTATTGCAAAGCTTCATTTGTTTAA 57.346 26.923 1.71 0.00 41.31 1.52
2237 2377 7.925483 ACTGTATTGCAAAGCTTCATTTGTTTA 59.075 29.630 1.71 0.00 41.31 2.01
2268 2408 0.033208 TTTAGGGGGCATGCCTGAAG 60.033 55.000 34.70 0.00 36.10 3.02
2269 2409 0.636101 ATTTAGGGGGCATGCCTGAA 59.364 50.000 34.70 19.05 36.10 3.02
2270 2410 0.636101 AATTTAGGGGGCATGCCTGA 59.364 50.000 34.70 15.58 36.10 3.86
2271 2411 1.043022 GAATTTAGGGGGCATGCCTG 58.957 55.000 34.70 0.00 36.10 4.85
2272 2412 0.636101 TGAATTTAGGGGGCATGCCT 59.364 50.000 34.70 19.04 36.10 4.75
2273 2413 1.720781 ATGAATTTAGGGGGCATGCC 58.279 50.000 29.47 29.47 0.00 4.40
2274 2414 3.843893 AAATGAATTTAGGGGGCATGC 57.156 42.857 9.90 9.90 0.00 4.06
2275 2415 6.232581 TGTAAAATGAATTTAGGGGGCATG 57.767 37.500 0.00 0.00 34.21 4.06
2276 2416 7.450323 AATGTAAAATGAATTTAGGGGGCAT 57.550 32.000 0.00 0.00 34.21 4.40
2277 2417 6.882768 AATGTAAAATGAATTTAGGGGGCA 57.117 33.333 0.00 0.00 34.21 5.36
2278 2418 7.713507 GGTTAATGTAAAATGAATTTAGGGGGC 59.286 37.037 0.00 0.00 34.21 5.80
2279 2419 8.208224 GGGTTAATGTAAAATGAATTTAGGGGG 58.792 37.037 0.00 0.00 34.21 5.40
2281 2421 8.208224 GGGGGTTAATGTAAAATGAATTTAGGG 58.792 37.037 0.00 0.00 34.21 3.53
2304 2444 1.413118 AGCAGAACAACTTTTGGGGG 58.587 50.000 0.00 0.00 34.12 5.40
2305 2445 3.541996 AAAGCAGAACAACTTTTGGGG 57.458 42.857 0.00 0.00 32.24 4.96
2307 2447 4.650985 GCAAAAAGCAGAACAACTTTTGG 58.349 39.130 1.84 0.57 43.45 3.28
2321 2461 4.045636 TGTGAGAGGAAAAGCAAAAAGC 57.954 40.909 0.00 0.00 46.19 3.51
2322 2462 6.101997 ACTTTGTGAGAGGAAAAGCAAAAAG 58.898 36.000 0.00 0.00 40.00 2.27
2323 2463 6.036577 ACTTTGTGAGAGGAAAAGCAAAAA 57.963 33.333 0.00 0.00 34.88 1.94
2337 2712 6.426328 ACTTCTCTGCAGATAAACTTTGTGAG 59.574 38.462 18.63 3.63 0.00 3.51
2340 2715 7.715249 TGTTACTTCTCTGCAGATAAACTTTGT 59.285 33.333 18.63 12.07 0.00 2.83
2341 2716 8.087982 TGTTACTTCTCTGCAGATAAACTTTG 57.912 34.615 18.63 6.67 0.00 2.77
2342 2717 8.560374 GTTGTTACTTCTCTGCAGATAAACTTT 58.440 33.333 18.63 3.87 0.00 2.66
2343 2718 7.173390 GGTTGTTACTTCTCTGCAGATAAACTT 59.827 37.037 18.63 6.23 0.00 2.66
2346 2721 5.637810 CGGTTGTTACTTCTCTGCAGATAAA 59.362 40.000 18.63 13.59 0.00 1.40
2362 2754 2.811431 CTCTTGCAATGACCGGTTGTTA 59.189 45.455 9.42 0.00 0.00 2.41
2363 2755 1.608590 CTCTTGCAATGACCGGTTGTT 59.391 47.619 9.42 3.71 0.00 2.83
2378 2770 5.675575 GCAGAATAACTTGTGGCATCTCTTG 60.676 44.000 0.00 0.00 0.00 3.02
2386 2778 4.479619 CAAAGAGCAGAATAACTTGTGGC 58.520 43.478 0.00 0.00 0.00 5.01
2395 2787 5.754782 TGGAATTAGCCAAAGAGCAGAATA 58.245 37.500 0.00 0.00 34.31 1.75
2396 2788 4.603131 TGGAATTAGCCAAAGAGCAGAAT 58.397 39.130 0.00 0.00 34.31 2.40
2400 2792 4.081531 CCAAATGGAATTAGCCAAAGAGCA 60.082 41.667 0.00 0.00 42.16 4.26
2401 2793 4.081476 ACCAAATGGAATTAGCCAAAGAGC 60.081 41.667 6.42 0.00 42.16 4.09
2402 2794 5.654497 GACCAAATGGAATTAGCCAAAGAG 58.346 41.667 6.42 0.00 42.16 2.85
2403 2795 4.157656 CGACCAAATGGAATTAGCCAAAGA 59.842 41.667 6.42 0.00 42.16 2.52
2404 2796 4.423732 CGACCAAATGGAATTAGCCAAAG 58.576 43.478 6.42 0.00 42.16 2.77
2405 2797 3.367910 GCGACCAAATGGAATTAGCCAAA 60.368 43.478 6.42 0.00 42.16 3.28
2406 2798 2.165437 GCGACCAAATGGAATTAGCCAA 59.835 45.455 6.42 0.00 42.16 4.52
2407 2799 1.748493 GCGACCAAATGGAATTAGCCA 59.252 47.619 6.42 0.00 43.23 4.75
2408 2800 1.748493 TGCGACCAAATGGAATTAGCC 59.252 47.619 6.42 0.00 33.67 3.93
2411 2803 4.438065 CGTTCATGCGACCAAATGGAATTA 60.438 41.667 6.42 0.00 33.67 1.40
2412 2804 3.673052 CGTTCATGCGACCAAATGGAATT 60.673 43.478 6.42 0.00 38.98 2.17
2413 2805 2.159393 CGTTCATGCGACCAAATGGAAT 60.159 45.455 6.42 0.00 38.94 3.01
2415 2807 0.801872 CGTTCATGCGACCAAATGGA 59.198 50.000 6.42 0.00 38.94 3.41
2416 2808 0.179166 CCGTTCATGCGACCAAATGG 60.179 55.000 0.00 0.00 42.17 3.16
2417 2809 0.801872 TCCGTTCATGCGACCAAATG 59.198 50.000 0.00 0.00 0.00 2.32
2418 2810 1.086696 CTCCGTTCATGCGACCAAAT 58.913 50.000 0.00 0.00 0.00 2.32
2419 2811 0.034198 TCTCCGTTCATGCGACCAAA 59.966 50.000 0.00 0.00 0.00 3.28
2420 2812 0.669318 GTCTCCGTTCATGCGACCAA 60.669 55.000 0.00 0.00 0.00 3.67
2421 2813 1.080093 GTCTCCGTTCATGCGACCA 60.080 57.895 0.00 0.00 0.00 4.02
2422 2814 0.460284 ATGTCTCCGTTCATGCGACC 60.460 55.000 0.00 0.00 0.00 4.79
2423 2815 0.647410 CATGTCTCCGTTCATGCGAC 59.353 55.000 0.00 0.00 35.72 5.19
2424 2816 0.530288 TCATGTCTCCGTTCATGCGA 59.470 50.000 0.00 0.00 40.54 5.10
2425 2817 0.926155 CTCATGTCTCCGTTCATGCG 59.074 55.000 0.00 0.00 40.54 4.73
2426 2818 0.654683 GCTCATGTCTCCGTTCATGC 59.345 55.000 0.00 0.00 40.54 4.06
2427 2819 0.926155 CGCTCATGTCTCCGTTCATG 59.074 55.000 0.00 0.00 41.64 3.07
2428 2820 0.807667 GCGCTCATGTCTCCGTTCAT 60.808 55.000 0.00 0.00 0.00 2.57
2429 2821 1.446099 GCGCTCATGTCTCCGTTCA 60.446 57.895 0.00 0.00 0.00 3.18
2430 2822 1.446099 TGCGCTCATGTCTCCGTTC 60.446 57.895 9.73 0.00 0.00 3.95
2431 2823 1.738099 GTGCGCTCATGTCTCCGTT 60.738 57.895 9.73 0.00 0.00 4.44
2432 2824 2.125912 GTGCGCTCATGTCTCCGT 60.126 61.111 9.73 0.00 0.00 4.69
2433 2825 1.520120 ATGTGCGCTCATGTCTCCG 60.520 57.895 23.05 0.00 0.00 4.63
2434 2826 0.460811 TCATGTGCGCTCATGTCTCC 60.461 55.000 37.17 6.92 43.70 3.71
2435 2827 1.260825 CATCATGTGCGCTCATGTCTC 59.739 52.381 37.17 9.86 43.70 3.36
2436 2828 1.296727 CATCATGTGCGCTCATGTCT 58.703 50.000 37.17 27.35 43.70 3.41
2437 2829 1.012086 ACATCATGTGCGCTCATGTC 58.988 50.000 37.17 12.51 43.70 3.06
2438 2830 1.456296 AACATCATGTGCGCTCATGT 58.544 45.000 37.17 26.65 43.70 3.21
2439 2831 2.554806 AAACATCATGTGCGCTCATG 57.445 45.000 35.12 35.12 44.36 3.07
2440 2832 2.871133 CAAAACATCATGTGCGCTCAT 58.129 42.857 18.69 18.69 0.00 2.90
2441 2833 1.666599 GCAAAACATCATGTGCGCTCA 60.667 47.619 15.29 15.29 0.00 4.26
2442 2834 0.986992 GCAAAACATCATGTGCGCTC 59.013 50.000 9.73 5.51 0.00 5.03
2443 2835 0.314618 TGCAAAACATCATGTGCGCT 59.685 45.000 9.73 0.00 39.92 5.92
2444 2836 1.138337 TTGCAAAACATCATGTGCGC 58.862 45.000 0.00 0.00 39.92 6.09
2445 2837 2.987821 TCATTGCAAAACATCATGTGCG 59.012 40.909 1.71 0.00 39.92 5.34
2446 2838 5.539582 AATCATTGCAAAACATCATGTGC 57.460 34.783 1.71 0.00 37.51 4.57
2447 2839 6.893759 ACAAATCATTGCAAAACATCATGTG 58.106 32.000 1.71 0.00 40.34 3.21
2448 2840 7.874016 AGTACAAATCATTGCAAAACATCATGT 59.126 29.630 1.71 6.10 40.34 3.21
2449 2841 8.246908 AGTACAAATCATTGCAAAACATCATG 57.753 30.769 1.71 0.00 40.34 3.07
2450 2842 9.926158 TTAGTACAAATCATTGCAAAACATCAT 57.074 25.926 1.71 0.00 40.34 2.45
2451 2843 9.190858 GTTAGTACAAATCATTGCAAAACATCA 57.809 29.630 1.71 0.00 40.34 3.07
2452 2844 9.190858 TGTTAGTACAAATCATTGCAAAACATC 57.809 29.630 1.71 0.00 40.34 3.06
2463 2855 6.209391 AGGCTTTGCTTGTTAGTACAAATCAT 59.791 34.615 0.00 0.00 43.33 2.45
2469 2861 3.072476 AGGAGGCTTTGCTTGTTAGTACA 59.928 43.478 0.00 0.00 0.00 2.90
2471 2863 3.616560 CGAGGAGGCTTTGCTTGTTAGTA 60.617 47.826 0.00 0.00 0.00 1.82
2472 2864 2.784347 GAGGAGGCTTTGCTTGTTAGT 58.216 47.619 0.00 0.00 0.00 2.24
2473 2865 1.734465 CGAGGAGGCTTTGCTTGTTAG 59.266 52.381 0.00 0.00 0.00 2.34
2485 2877 1.153667 CTGCAACTCTCGAGGAGGC 60.154 63.158 13.56 11.89 45.83 4.70
2492 2884 2.410053 GCTTGTCTTACTGCAACTCTCG 59.590 50.000 0.00 0.00 0.00 4.04
2495 2887 3.999663 AGATGCTTGTCTTACTGCAACTC 59.000 43.478 0.00 0.00 38.96 3.01
2505 2897 7.573968 ACTCTTGTTTTTAGATGCTTGTCTT 57.426 32.000 0.00 0.00 0.00 3.01
2507 2899 7.417612 TCAACTCTTGTTTTTAGATGCTTGTC 58.582 34.615 0.00 0.00 33.52 3.18
2508 2900 7.333528 TCAACTCTTGTTTTTAGATGCTTGT 57.666 32.000 0.00 0.00 33.52 3.16
2509 2901 7.917505 ACTTCAACTCTTGTTTTTAGATGCTTG 59.082 33.333 0.00 0.00 33.52 4.01
2510 2902 8.000780 ACTTCAACTCTTGTTTTTAGATGCTT 57.999 30.769 0.00 0.00 33.52 3.91
2511 2903 7.283127 TGACTTCAACTCTTGTTTTTAGATGCT 59.717 33.333 0.00 0.00 33.52 3.79
2532 2924 3.632604 TCTGTCGTCTGAAACTCTGACTT 59.367 43.478 10.66 0.00 41.39 3.01
2533 2925 3.003897 GTCTGTCGTCTGAAACTCTGACT 59.996 47.826 10.66 0.00 41.39 3.41
2542 2934 2.029918 CCTGATGTGTCTGTCGTCTGAA 60.030 50.000 0.00 0.00 0.00 3.02
2543 2935 1.541588 CCTGATGTGTCTGTCGTCTGA 59.458 52.381 0.00 0.00 0.00 3.27
2544 2936 1.270826 ACCTGATGTGTCTGTCGTCTG 59.729 52.381 0.00 0.00 0.00 3.51
2580 2972 0.822121 TGATCAGCAGCCATCCATGC 60.822 55.000 0.00 0.00 42.87 4.06
2589 2981 4.842292 TGATCCGTGATCAGCAGC 57.158 55.556 11.18 0.00 43.11 5.25
2606 2998 1.942657 GCCGATGTATGCACACTGATT 59.057 47.619 0.00 0.00 37.54 2.57
2607 2999 1.586422 GCCGATGTATGCACACTGAT 58.414 50.000 0.00 0.00 37.54 2.90
2608 3000 0.461870 GGCCGATGTATGCACACTGA 60.462 55.000 0.00 0.00 37.54 3.41
2609 3001 0.744057 TGGCCGATGTATGCACACTG 60.744 55.000 0.00 0.00 37.54 3.66
2610 3002 0.181114 ATGGCCGATGTATGCACACT 59.819 50.000 0.00 0.00 37.54 3.55
2611 3003 0.588252 GATGGCCGATGTATGCACAC 59.412 55.000 0.00 0.00 37.54 3.82
2612 3004 0.469494 AGATGGCCGATGTATGCACA 59.531 50.000 0.00 0.00 39.52 4.57
2613 3005 1.151668 GAGATGGCCGATGTATGCAC 58.848 55.000 0.00 0.00 0.00 4.57
2614 3006 0.035317 GGAGATGGCCGATGTATGCA 59.965 55.000 0.00 0.00 0.00 3.96
2615 3007 0.322975 AGGAGATGGCCGATGTATGC 59.677 55.000 0.00 0.00 0.00 3.14
2616 3008 1.943046 GCAGGAGATGGCCGATGTATG 60.943 57.143 0.00 0.00 0.00 2.39
2617 3009 0.322975 GCAGGAGATGGCCGATGTAT 59.677 55.000 0.00 0.00 0.00 2.29
2618 3010 1.748403 GCAGGAGATGGCCGATGTA 59.252 57.895 0.00 0.00 0.00 2.29
2619 3011 2.507944 GCAGGAGATGGCCGATGT 59.492 61.111 0.00 0.00 0.00 3.06
2635 3027 4.459089 GAGTCGGAGTGCCTGGGC 62.459 72.222 4.43 4.43 42.35 5.36
2636 3028 3.775654 GGAGTCGGAGTGCCTGGG 61.776 72.222 0.00 0.00 0.00 4.45
2637 3029 4.135153 CGGAGTCGGAGTGCCTGG 62.135 72.222 0.00 0.00 0.00 4.45
2638 3030 4.803426 GCGGAGTCGGAGTGCCTG 62.803 72.222 1.18 0.00 36.79 4.85
2640 3032 4.803426 CAGCGGAGTCGGAGTGCC 62.803 72.222 1.18 0.00 36.79 5.01
2642 3034 3.753434 AGCAGCGGAGTCGGAGTG 61.753 66.667 1.18 0.00 36.79 3.51
2643 3035 3.753434 CAGCAGCGGAGTCGGAGT 61.753 66.667 1.18 0.00 36.79 3.85
2659 3051 0.599991 CCTGAACTGTGTACTGCGCA 60.600 55.000 10.98 10.98 36.06 6.09
2660 3052 1.291877 CCCTGAACTGTGTACTGCGC 61.292 60.000 0.00 0.00 0.00 6.09
2661 3053 1.291877 GCCCTGAACTGTGTACTGCG 61.292 60.000 0.00 0.00 0.00 5.18
2662 3054 1.291877 CGCCCTGAACTGTGTACTGC 61.292 60.000 0.00 0.00 0.00 4.40
2663 3055 0.033504 ACGCCCTGAACTGTGTACTG 59.966 55.000 0.00 0.00 0.00 2.74
2664 3056 0.317479 GACGCCCTGAACTGTGTACT 59.683 55.000 0.00 0.00 0.00 2.73
2665 3057 1.007336 CGACGCCCTGAACTGTGTAC 61.007 60.000 0.00 0.00 0.00 2.90
2666 3058 1.174078 TCGACGCCCTGAACTGTGTA 61.174 55.000 0.00 0.00 0.00 2.90
2667 3059 2.023414 TTCGACGCCCTGAACTGTGT 62.023 55.000 0.00 0.00 0.00 3.72
2668 3060 1.284982 CTTCGACGCCCTGAACTGTG 61.285 60.000 0.00 0.00 0.00 3.66
2669 3061 1.006102 CTTCGACGCCCTGAACTGT 60.006 57.895 0.00 0.00 0.00 3.55
2670 3062 1.738099 CCTTCGACGCCCTGAACTG 60.738 63.158 0.00 0.00 0.00 3.16
2671 3063 2.657237 CCTTCGACGCCCTGAACT 59.343 61.111 0.00 0.00 0.00 3.01
2672 3064 3.119096 GCCTTCGACGCCCTGAAC 61.119 66.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.