Multiple sequence alignment - TraesCS1B01G362500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G362500 chr1B 100.000 5892 0 0 1 5892 591228424 591234315 0.000000e+00 10881
1 TraesCS1B01G362500 chr1A 92.416 2268 121 28 2725 4966 533465014 533467256 0.000000e+00 3188
2 TraesCS1B01G362500 chr1A 94.052 807 23 9 1938 2726 533463956 533464755 0.000000e+00 1201
3 TraesCS1B01G362500 chr1A 87.106 1047 83 28 717 1747 533462946 533463956 0.000000e+00 1138
4 TraesCS1B01G362500 chr1A 83.179 755 44 33 1 719 533462195 533462902 1.090000e-171 614
5 TraesCS1B01G362500 chr1A 97.000 200 6 0 1744 1943 333878916 333878717 2.630000e-88 337
6 TraesCS1B01G362500 chr1A 84.225 355 33 11 5552 5892 533468040 533468385 2.050000e-84 324
7 TraesCS1B01G362500 chr1A 88.506 87 8 2 4014 4100 533466223 533466307 2.900000e-18 104
8 TraesCS1B01G362500 chr1D 90.737 1317 70 25 3666 4966 436214096 436215376 0.000000e+00 1709
9 TraesCS1B01G362500 chr1D 89.048 1050 85 14 722 1758 436211367 436212399 0.000000e+00 1275
10 TraesCS1B01G362500 chr1D 92.719 879 37 12 2817 3671 436213143 436214018 0.000000e+00 1243
11 TraesCS1B01G362500 chr1D 94.703 774 23 4 1937 2700 436212384 436213149 0.000000e+00 1186
12 TraesCS1B01G362500 chr1D 89.145 433 31 8 1 428 436210793 436211214 5.230000e-145 525
13 TraesCS1B01G362500 chr1D 82.353 357 26 15 5552 5892 436216174 436216509 5.820000e-70 276
14 TraesCS1B01G362500 chr1D 86.364 154 10 7 4961 5113 436215412 436215555 2.200000e-34 158
15 TraesCS1B01G362500 chr3B 87.387 666 60 10 1971 2627 565564139 565563489 0.000000e+00 743
16 TraesCS1B01G362500 chr3B 87.237 666 62 9 1971 2627 565434458 565433807 0.000000e+00 737
17 TraesCS1B01G362500 chr3B 87.115 520 41 15 4457 4964 565429168 565428663 3.080000e-157 566
18 TraesCS1B01G362500 chr3B 86.731 520 43 17 4457 4964 565561732 565561227 6.670000e-154 555
19 TraesCS1B01G362500 chr3B 81.993 572 74 13 1193 1758 565564801 565564253 5.380000e-125 459
20 TraesCS1B01G362500 chr3B 82.946 516 48 15 716 1203 565435527 565435024 4.220000e-116 429
21 TraesCS1B01G362500 chr3B 82.881 479 55 11 3016 3468 565562653 565562176 7.110000e-109 405
22 TraesCS1B01G362500 chr3B 97.500 200 3 2 1738 1936 50797277 50797079 2.030000e-89 340
23 TraesCS1B01G362500 chr3B 84.638 345 37 6 3139 3468 565430294 565429951 4.400000e-86 329
24 TraesCS1B01G362500 chr3B 86.719 256 25 4 1427 1680 565434924 565434676 5.820000e-70 276
25 TraesCS1B01G362500 chr3B 78.270 497 55 26 223 692 565565898 565565428 2.710000e-68 270
26 TraesCS1B01G362500 chr3B 92.105 152 12 0 1052 1203 565564975 565564824 1.290000e-51 215
27 TraesCS1B01G362500 chr3B 86.842 190 14 4 904 1086 565565153 565564968 1.000000e-47 202
28 TraesCS1B01G362500 chr3B 87.952 83 10 0 3016 3098 565432976 565432894 1.350000e-16 99
29 TraesCS1B01G362500 chr3A 85.457 667 72 9 1971 2627 571398615 571397964 0.000000e+00 671
30 TraesCS1B01G362500 chr3A 88.224 518 40 14 4457 4964 571395872 571395366 3.040000e-167 599
31 TraesCS1B01G362500 chr3A 83.449 574 66 15 1191 1758 571399279 571398729 1.890000e-139 507
32 TraesCS1B01G362500 chr3A 82.704 503 63 13 716 1203 571399794 571399301 5.460000e-115 425
33 TraesCS1B01G362500 chr3A 97.073 205 3 3 1739 1942 75962240 75962038 5.650000e-90 342
34 TraesCS1B01G362500 chr3D 88.201 517 41 13 4457 4964 433189859 433189354 3.040000e-167 599
35 TraesCS1B01G362500 chr3D 82.404 574 71 15 1191 1758 433193258 433192709 1.920000e-129 473
36 TraesCS1B01G362500 chr3D 81.693 508 49 26 716 1203 433193762 433193279 3.330000e-102 383
37 TraesCS1B01G362500 chr3D 90.347 259 24 1 1971 2229 433192594 433192337 7.310000e-89 339
38 TraesCS1B01G362500 chr3D 83.243 370 37 8 2268 2627 433192337 433191983 3.430000e-82 316
39 TraesCS1B01G362500 chr3D 77.136 433 58 22 223 640 433194486 433194080 4.630000e-51 213
40 TraesCS1B01G362500 chr3D 84.158 202 20 6 3663 3854 433190078 433189879 1.010000e-42 185
41 TraesCS1B01G362500 chr6A 100.000 188 0 0 1752 1939 144524286 144524099 1.220000e-91 348
42 TraesCS1B01G362500 chr7A 100.000 187 0 0 1752 1938 350426291 350426477 4.370000e-91 346
43 TraesCS1B01G362500 chr5B 98.477 197 1 2 1749 1944 225521952 225521757 4.370000e-91 346
44 TraesCS1B01G362500 chr5B 100.000 187 0 0 1751 1937 506953735 506953921 4.370000e-91 346
45 TraesCS1B01G362500 chr5B 100.000 186 0 0 1751 1936 245829931 245830116 1.570000e-90 344
46 TraesCS1B01G362500 chr4A 100.000 186 0 0 1752 1937 514417561 514417746 1.570000e-90 344


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G362500 chr1B 591228424 591234315 5891 False 10881.000000 10881 100.000000 1 5892 1 chr1B.!!$F1 5891
1 TraesCS1B01G362500 chr1A 533462195 533468385 6190 False 1094.833333 3188 88.247333 1 5892 6 chr1A.!!$F1 5891
2 TraesCS1B01G362500 chr1D 436210793 436216509 5716 False 910.285714 1709 89.295571 1 5892 7 chr1D.!!$F1 5891
3 TraesCS1B01G362500 chr3B 565561227 565565898 4671 True 407.000000 743 85.172714 223 4964 7 chr3B.!!$R3 4741
4 TraesCS1B01G362500 chr3B 565428663 565435527 6864 True 406.000000 737 86.101167 716 4964 6 chr3B.!!$R2 4248
5 TraesCS1B01G362500 chr3A 571395366 571399794 4428 True 550.500000 671 84.958500 716 4964 4 chr3A.!!$R2 4248
6 TraesCS1B01G362500 chr3D 433189354 433194486 5132 True 358.285714 599 83.883143 223 4964 7 chr3D.!!$R1 4741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.248289 AAGAATACGGGTCGGTGGTG 59.752 55.0 0.00 0.00 0.00 4.17 F
1178 1546 0.034616 GAATGCTAGATCCTGGCGCT 59.965 55.0 7.64 0.00 40.90 5.92 F
1863 2308 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.0 3.79 0.00 30.80 3.13 F
1926 2371 0.174162 GTCGCCTTAGGGACGCTTTA 59.826 55.0 0.00 0.00 44.82 1.85 F
2951 3830 0.545171 CTCTGATGCCACCAGGTCAT 59.455 55.0 0.00 0.00 37.19 3.06 F
3120 7008 0.601558 ACAAGAGCTGGCTGCAATTG 59.398 50.0 22.68 22.68 45.94 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 2289 0.170339 GGAAAATCGACCGCTTTGGG 59.830 55.0 0.00 0.0 44.64 4.12 R
3098 6984 0.251033 TTGCAGCCAGCTCTTGTCAT 60.251 50.0 0.19 0.0 45.94 3.06 R
3497 7495 2.289444 GGGGTCTTCGAACTGATTGTGA 60.289 50.0 0.00 0.0 0.00 3.58 R
3621 7633 2.563179 AGGTGACCAGACATCACTACAC 59.437 50.0 3.63 0.0 44.88 2.90 R
4822 9612 0.674895 GAATGGACGCCTTCTGCAGT 60.675 55.0 14.67 0.0 41.33 4.40 R
4968 9758 0.178961 ATGCATGGATGGCTGCTGAT 60.179 50.0 0.00 0.0 39.16 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 0.388294 CTCGGGGAAGAATACGGGTC 59.612 60.000 0.00 0.00 0.00 4.46
96 97 0.533951 GAAGAATACGGGTCGGTGGT 59.466 55.000 0.00 0.00 0.00 4.16
97 98 0.248289 AAGAATACGGGTCGGTGGTG 59.752 55.000 0.00 0.00 0.00 4.17
98 99 1.153509 GAATACGGGTCGGTGGTGG 60.154 63.158 0.00 0.00 0.00 4.61
99 100 2.582734 GAATACGGGTCGGTGGTGGG 62.583 65.000 0.00 0.00 0.00 4.61
214 215 7.921041 TCTAGAAGATCCTCCACATATTTGT 57.079 36.000 0.00 0.00 36.15 2.83
254 256 1.871039 TCCCGAAAAACAGAAGCGAAG 59.129 47.619 0.00 0.00 0.00 3.79
325 335 1.692042 CAGGTCAGCCTCCCCATCT 60.692 63.158 0.00 0.00 44.97 2.90
363 377 2.736826 CCCGCCTTTCTCCCTCTCC 61.737 68.421 0.00 0.00 0.00 3.71
439 462 4.980805 GCTCGGCAACCACGACCA 62.981 66.667 0.00 0.00 36.25 4.02
440 463 2.738521 CTCGGCAACCACGACCAG 60.739 66.667 0.00 0.00 36.25 4.00
441 464 3.220999 CTCGGCAACCACGACCAGA 62.221 63.158 0.00 0.00 36.25 3.86
442 465 2.738521 CGGCAACCACGACCAGAG 60.739 66.667 0.00 0.00 0.00 3.35
447 470 1.534235 AACCACGACCAGAGAGCCT 60.534 57.895 0.00 0.00 0.00 4.58
589 637 4.101942 TGTACAAGCGCTGTTTTTCTTTG 58.898 39.130 12.58 4.20 39.64 2.77
590 638 3.230743 ACAAGCGCTGTTTTTCTTTGT 57.769 38.095 12.58 4.99 32.99 2.83
591 639 4.364415 ACAAGCGCTGTTTTTCTTTGTA 57.636 36.364 12.58 0.00 32.99 2.41
592 640 4.932146 ACAAGCGCTGTTTTTCTTTGTAT 58.068 34.783 12.58 0.00 32.99 2.29
593 641 6.067263 ACAAGCGCTGTTTTTCTTTGTATA 57.933 33.333 12.58 0.00 32.99 1.47
594 642 6.677913 ACAAGCGCTGTTTTTCTTTGTATAT 58.322 32.000 12.58 0.00 32.99 0.86
595 643 6.582295 ACAAGCGCTGTTTTTCTTTGTATATG 59.418 34.615 12.58 0.69 32.99 1.78
596 644 6.254281 AGCGCTGTTTTTCTTTGTATATGT 57.746 33.333 10.39 0.00 0.00 2.29
597 645 6.086222 AGCGCTGTTTTTCTTTGTATATGTG 58.914 36.000 10.39 0.00 0.00 3.21
598 646 5.220024 GCGCTGTTTTTCTTTGTATATGTGC 60.220 40.000 0.00 0.00 0.00 4.57
599 647 5.286082 CGCTGTTTTTCTTTGTATATGTGCC 59.714 40.000 0.00 0.00 0.00 5.01
600 648 5.286082 GCTGTTTTTCTTTGTATATGTGCCG 59.714 40.000 0.00 0.00 0.00 5.69
601 649 5.157781 TGTTTTTCTTTGTATATGTGCCGC 58.842 37.500 0.00 0.00 0.00 6.53
602 650 5.048364 TGTTTTTCTTTGTATATGTGCCGCT 60.048 36.000 0.00 0.00 0.00 5.52
603 651 4.614555 TTTCTTTGTATATGTGCCGCTG 57.385 40.909 0.00 0.00 0.00 5.18
610 659 4.447290 TGTATATGTGCCGCTGTTTGTAT 58.553 39.130 0.00 0.00 0.00 2.29
619 668 2.742053 CCGCTGTTTGTATAAGTGCTGT 59.258 45.455 0.00 0.00 0.00 4.40
635 684 3.792956 GTGCTGTTGTTGTGTTCTTGATG 59.207 43.478 0.00 0.00 0.00 3.07
640 853 7.174772 TGCTGTTGTTGTGTTCTTGATGTATAT 59.825 33.333 0.00 0.00 0.00 0.86
641 854 8.664798 GCTGTTGTTGTGTTCTTGATGTATATA 58.335 33.333 0.00 0.00 0.00 0.86
644 857 9.769093 GTTGTTGTGTTCTTGATGTATATAACC 57.231 33.333 0.00 0.00 0.00 2.85
645 858 9.508642 TTGTTGTGTTCTTGATGTATATAACCA 57.491 29.630 0.00 0.00 0.00 3.67
720 1023 8.506168 TCAAAGTACAATGTTCATCCTATTCC 57.494 34.615 0.00 0.00 0.00 3.01
724 1027 6.761714 AGTACAATGTTCATCCTATTCCGAAC 59.238 38.462 0.00 0.00 38.55 3.95
773 1078 5.163663 TGTCAGTTCTTGAACATCCAAACAC 60.164 40.000 14.80 1.96 37.61 3.32
776 1081 4.339247 AGTTCTTGAACATCCAAACACCAG 59.661 41.667 14.80 0.00 0.00 4.00
778 1083 4.136796 TCTTGAACATCCAAACACCAGAG 58.863 43.478 0.00 0.00 0.00 3.35
784 1095 3.117888 ACATCCAAACACCAGAGTTCAGT 60.118 43.478 0.00 0.00 0.00 3.41
796 1107 5.888161 ACCAGAGTTCAGTTTCAGTTTCAAT 59.112 36.000 0.00 0.00 0.00 2.57
797 1108 7.012327 CACCAGAGTTCAGTTTCAGTTTCAATA 59.988 37.037 0.00 0.00 0.00 1.90
798 1109 7.721399 ACCAGAGTTCAGTTTCAGTTTCAATAT 59.279 33.333 0.00 0.00 0.00 1.28
799 1110 8.233190 CCAGAGTTCAGTTTCAGTTTCAATATC 58.767 37.037 0.00 0.00 0.00 1.63
800 1111 8.777413 CAGAGTTCAGTTTCAGTTTCAATATCA 58.223 33.333 0.00 0.00 0.00 2.15
801 1112 9.342308 AGAGTTCAGTTTCAGTTTCAATATCAA 57.658 29.630 0.00 0.00 0.00 2.57
802 1113 9.950680 GAGTTCAGTTTCAGTTTCAATATCAAA 57.049 29.630 0.00 0.00 0.00 2.69
835 1146 4.726317 TCTGGGAGATTTGATATTGGGACA 59.274 41.667 0.00 0.00 0.00 4.02
855 1175 8.646004 TGGGACAAATTCACTTTCAATATCAAA 58.354 29.630 0.00 0.00 31.92 2.69
877 1209 1.136305 TCCGAACGGAGCCTTAGAATG 59.864 52.381 12.04 0.00 39.76 2.67
897 1232 8.899427 AGAATGTTACTCCACATGAGAATATG 57.101 34.615 0.00 0.00 44.42 1.78
899 1234 6.806668 TGTTACTCCACATGAGAATATGGA 57.193 37.500 0.00 0.00 44.42 3.41
901 1236 7.629157 TGTTACTCCACATGAGAATATGGAAA 58.371 34.615 0.00 0.00 44.42 3.13
912 1247 9.439500 CATGAGAATATGGAAAACCAAATTTGT 57.561 29.630 16.73 2.76 0.00 2.83
937 1272 5.070981 TGAGTGAGTTGGACTTTCTCTCATT 59.929 40.000 0.00 0.00 36.87 2.57
942 1277 2.783135 TGGACTTTCTCTCATTGGCAC 58.217 47.619 0.00 0.00 0.00 5.01
957 1292 4.051313 ATTGGCACAGTGCAAATTGTTCC 61.051 43.478 26.78 6.77 44.15 3.62
962 1297 2.366266 ACAGTGCAAATTGTTCCTGCAT 59.634 40.909 5.13 0.00 46.90 3.96
964 1299 1.461897 GTGCAAATTGTTCCTGCATGC 59.538 47.619 11.82 11.82 46.90 4.06
965 1300 1.070289 TGCAAATTGTTCCTGCATGCA 59.930 42.857 21.29 21.29 41.01 3.96
966 1301 1.730064 GCAAATTGTTCCTGCATGCAG 59.270 47.619 35.88 35.88 43.26 4.41
976 1315 0.974010 CTGCATGCAGGGTTGGGAAT 60.974 55.000 35.39 0.00 40.17 3.01
1106 1474 7.907045 GCTTGTACAAATGACATGAATACTCTG 59.093 37.037 10.03 0.00 0.00 3.35
1142 1510 5.174943 GCTTATTTCGGTTGTTTTCCAAGTG 59.825 40.000 0.00 0.00 32.51 3.16
1160 1528 1.680735 GTGACTGCAAATGGTGTTGGA 59.319 47.619 0.00 0.00 0.00 3.53
1178 1546 0.034616 GAATGCTAGATCCTGGCGCT 59.965 55.000 7.64 0.00 40.90 5.92
1211 1613 2.084546 GTAAGCATCTTTCCAACGGCT 58.915 47.619 0.00 0.00 0.00 5.52
1223 1625 1.939255 CCAACGGCTTTTGTGCATTTT 59.061 42.857 0.00 0.00 34.04 1.82
1224 1626 3.126831 CCAACGGCTTTTGTGCATTTTA 58.873 40.909 0.00 0.00 34.04 1.52
1225 1627 3.745458 CCAACGGCTTTTGTGCATTTTAT 59.255 39.130 0.00 0.00 34.04 1.40
1226 1628 4.377226 CCAACGGCTTTTGTGCATTTTATG 60.377 41.667 0.00 0.00 34.04 1.90
1229 1631 4.813697 ACGGCTTTTGTGCATTTTATGTTT 59.186 33.333 0.00 0.00 34.04 2.83
1231 1633 6.648725 ACGGCTTTTGTGCATTTTATGTTTAT 59.351 30.769 0.00 0.00 34.04 1.40
1232 1634 7.148656 ACGGCTTTTGTGCATTTTATGTTTATC 60.149 33.333 0.00 0.00 34.04 1.75
1233 1635 7.063308 CGGCTTTTGTGCATTTTATGTTTATCT 59.937 33.333 0.00 0.00 34.04 1.98
1234 1636 8.170553 GGCTTTTGTGCATTTTATGTTTATCTG 58.829 33.333 0.00 0.00 34.04 2.90
1235 1637 7.689400 GCTTTTGTGCATTTTATGTTTATCTGC 59.311 33.333 0.00 0.00 0.00 4.26
1236 1638 8.830201 TTTTGTGCATTTTATGTTTATCTGCT 57.170 26.923 0.00 0.00 0.00 4.24
1237 1639 9.920133 TTTTGTGCATTTTATGTTTATCTGCTA 57.080 25.926 0.00 0.00 0.00 3.49
1239 1641 9.518906 TTGTGCATTTTATGTTTATCTGCTATG 57.481 29.630 0.00 0.00 0.00 2.23
1240 1642 8.685427 TGTGCATTTTATGTTTATCTGCTATGT 58.315 29.630 0.00 0.00 0.00 2.29
1241 1643 9.520204 GTGCATTTTATGTTTATCTGCTATGTT 57.480 29.630 0.00 0.00 0.00 2.71
1259 1672 2.102578 GTTAAACCTGCTGATGGGCAT 58.897 47.619 0.00 0.00 41.63 4.40
1290 1703 7.121168 TGCTAATTCTTTATCTGGTCTGTTTGG 59.879 37.037 0.00 0.00 0.00 3.28
1312 1725 5.470098 TGGTCTTGAGCAAATTACTTCTCAC 59.530 40.000 0.00 0.00 35.55 3.51
1315 1728 7.020010 GTCTTGAGCAAATTACTTCTCACATG 58.980 38.462 0.00 0.00 35.55 3.21
1340 1753 6.642950 GCGCTGACTAGTTAGATGATGTTTAT 59.357 38.462 18.27 0.00 0.00 1.40
1386 1799 8.500773 CATTCTTGCTCATTTTAGTTTGCAAAT 58.499 29.630 16.21 7.20 39.42 2.32
1450 1863 4.556699 GCCATGTTTCTTGGTGAACACTAC 60.557 45.833 4.96 0.00 36.57 2.73
1519 1934 6.718454 TGGAAAATGAAATGGCGTATTTTG 57.282 33.333 3.95 0.00 39.06 2.44
1579 1994 1.068588 GTTCAGGTTGAAAAGGGTGCC 59.931 52.381 0.00 0.00 38.22 5.01
1645 2060 2.159747 GGAACAAGCGGTGTCGATAAAC 60.160 50.000 0.00 0.00 40.60 2.01
1756 2201 7.761038 TGTATGCAGTAGTATGTAGCTATGT 57.239 36.000 0.00 0.00 0.00 2.29
1757 2202 8.178313 TGTATGCAGTAGTATGTAGCTATGTT 57.822 34.615 0.00 0.00 0.00 2.71
1758 2203 8.638873 TGTATGCAGTAGTATGTAGCTATGTTT 58.361 33.333 0.00 0.00 0.00 2.83
1759 2204 9.477484 GTATGCAGTAGTATGTAGCTATGTTTT 57.523 33.333 0.00 0.00 0.00 2.43
1760 2205 8.964476 ATGCAGTAGTATGTAGCTATGTTTTT 57.036 30.769 0.00 0.00 0.00 1.94
1762 2207 9.878667 TGCAGTAGTATGTAGCTATGTTTTTAA 57.121 29.630 0.00 0.00 0.00 1.52
1765 2210 9.543783 AGTAGTATGTAGCTATGTTTTTAAGGC 57.456 33.333 0.00 0.00 0.00 4.35
1766 2211 7.478520 AGTATGTAGCTATGTTTTTAAGGCG 57.521 36.000 0.00 0.00 0.00 5.52
1767 2212 7.270047 AGTATGTAGCTATGTTTTTAAGGCGA 58.730 34.615 0.00 0.00 0.00 5.54
1768 2213 5.789710 TGTAGCTATGTTTTTAAGGCGAC 57.210 39.130 0.00 0.00 0.00 5.19
1769 2214 4.327898 TGTAGCTATGTTTTTAAGGCGACG 59.672 41.667 0.00 0.00 0.00 5.12
1770 2215 2.095372 AGCTATGTTTTTAAGGCGACGC 59.905 45.455 12.43 12.43 0.00 5.19
1782 2227 2.491152 CGACGCCTTACCGCCTTA 59.509 61.111 0.00 0.00 0.00 2.69
1783 2228 1.588139 CGACGCCTTACCGCCTTAG 60.588 63.158 0.00 0.00 0.00 2.18
1784 2229 1.227176 GACGCCTTACCGCCTTAGG 60.227 63.158 0.00 0.00 37.30 2.69
1785 2230 2.108362 CGCCTTACCGCCTTAGGG 59.892 66.667 0.00 0.00 35.02 3.53
1786 2231 2.428925 CGCCTTACCGCCTTAGGGA 61.429 63.158 0.00 0.00 35.02 4.20
1787 2232 1.446366 GCCTTACCGCCTTAGGGAG 59.554 63.158 0.00 0.00 35.02 4.30
1833 2278 4.467084 CTAGGCGGGCGCTTTGGA 62.467 66.667 7.64 0.00 41.60 3.53
1834 2279 4.770874 TAGGCGGGCGCTTTGGAC 62.771 66.667 7.64 0.00 41.60 4.02
1842 2287 3.195698 CGCTTTGGACGCCTAGGC 61.196 66.667 24.75 24.75 37.85 3.93
1860 2305 3.274067 GCCCAAAGCGGTCGATTT 58.726 55.556 0.55 0.55 33.72 2.17
1861 2306 1.584495 GCCCAAAGCGGTCGATTTT 59.416 52.632 3.79 0.00 30.80 1.82
1862 2307 0.456142 GCCCAAAGCGGTCGATTTTC 60.456 55.000 3.79 0.00 30.80 2.29
1863 2308 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.00 30.80 3.13
1864 2309 0.878416 CCAAAGCGGTCGATTTTCCA 59.122 50.000 3.79 0.00 30.80 3.53
1865 2310 1.268352 CCAAAGCGGTCGATTTTCCAA 59.732 47.619 3.79 0.00 30.80 3.53
1866 2311 2.287909 CCAAAGCGGTCGATTTTCCAAA 60.288 45.455 3.79 0.00 30.80 3.28
1867 2312 2.979813 CAAAGCGGTCGATTTTCCAAAG 59.020 45.455 3.79 0.00 30.80 2.77
1868 2313 0.521735 AGCGGTCGATTTTCCAAAGC 59.478 50.000 0.00 0.00 0.00 3.51
1869 2314 0.793104 GCGGTCGATTTTCCAAAGCG 60.793 55.000 0.54 0.54 0.00 4.68
1870 2315 0.179200 CGGTCGATTTTCCAAAGCGG 60.179 55.000 7.00 0.00 0.00 5.52
1871 2316 1.161843 GGTCGATTTTCCAAAGCGGA 58.838 50.000 7.00 0.00 44.40 5.54
1878 2323 3.009115 TCCAAAGCGGAGGGGGAG 61.009 66.667 0.00 0.00 39.64 4.30
1879 2324 4.803908 CCAAAGCGGAGGGGGAGC 62.804 72.222 0.00 0.00 36.56 4.70
1887 2332 4.516195 GAGGGGGAGCGCTTCGAC 62.516 72.222 13.26 5.82 0.00 4.20
1924 2369 2.577593 GTCGCCTTAGGGACGCTT 59.422 61.111 0.00 0.00 44.82 4.68
1925 2370 1.079336 GTCGCCTTAGGGACGCTTT 60.079 57.895 0.00 0.00 44.82 3.51
1926 2371 0.174162 GTCGCCTTAGGGACGCTTTA 59.826 55.000 0.00 0.00 44.82 1.85
1927 2372 0.896923 TCGCCTTAGGGACGCTTTAA 59.103 50.000 0.00 0.00 34.09 1.52
1928 2373 1.275856 TCGCCTTAGGGACGCTTTAAA 59.724 47.619 0.00 0.00 34.09 1.52
1929 2374 2.078392 CGCCTTAGGGACGCTTTAAAA 58.922 47.619 0.00 0.00 33.58 1.52
1930 2375 2.485038 CGCCTTAGGGACGCTTTAAAAA 59.515 45.455 0.00 0.00 33.58 1.94
1931 2376 3.668757 CGCCTTAGGGACGCTTTAAAAAC 60.669 47.826 0.00 0.00 33.58 2.43
1932 2377 3.253921 GCCTTAGGGACGCTTTAAAAACA 59.746 43.478 0.00 0.00 33.58 2.83
1933 2378 4.082408 GCCTTAGGGACGCTTTAAAAACAT 60.082 41.667 0.00 0.00 33.58 2.71
1934 2379 5.124297 GCCTTAGGGACGCTTTAAAAACATA 59.876 40.000 0.00 0.00 33.58 2.29
1935 2380 6.677187 GCCTTAGGGACGCTTTAAAAACATAG 60.677 42.308 0.00 0.00 33.58 2.23
1936 2381 6.183360 CCTTAGGGACGCTTTAAAAACATAGG 60.183 42.308 0.00 0.00 33.58 2.57
1937 2382 4.659115 AGGGACGCTTTAAAAACATAGGT 58.341 39.130 0.00 0.00 0.00 3.08
2111 2652 3.314913 TGAACGACCTCAGTTACACGTAA 59.685 43.478 0.00 0.00 33.76 3.18
2148 2689 8.588472 CCTTTTTCTTCCATCTCATTACCTTTT 58.412 33.333 0.00 0.00 0.00 2.27
2192 2733 8.246908 TGCAAATTCTCATTAAAATGCTTCTG 57.753 30.769 0.00 0.00 36.36 3.02
2306 2847 2.358898 GGCAATTGTGTAGGCATACAGG 59.641 50.000 12.21 1.01 42.53 4.00
2307 2848 3.278574 GCAATTGTGTAGGCATACAGGA 58.721 45.455 12.21 3.82 42.53 3.86
2308 2849 3.885297 GCAATTGTGTAGGCATACAGGAT 59.115 43.478 12.21 6.13 42.53 3.24
2309 2850 5.063204 GCAATTGTGTAGGCATACAGGATA 58.937 41.667 12.21 0.00 42.53 2.59
2310 2851 5.049405 GCAATTGTGTAGGCATACAGGATAC 60.049 44.000 12.21 0.07 42.53 2.24
2311 2852 5.887214 ATTGTGTAGGCATACAGGATACA 57.113 39.130 12.21 2.98 42.53 2.29
2312 2853 4.937201 TGTGTAGGCATACAGGATACAG 57.063 45.455 12.21 0.00 42.53 2.74
2544 3094 8.246180 GCAATCATATGGTTTTCTTTTCTGAGA 58.754 33.333 0.00 0.00 0.00 3.27
2688 3296 9.253832 TGTCCACTCCAACAAATGATTTAATAT 57.746 29.630 0.00 0.00 0.00 1.28
2779 3647 5.722021 ATGAACCGCACCTTCTTAAAATT 57.278 34.783 0.00 0.00 0.00 1.82
2791 3659 7.756722 CACCTTCTTAAAATTCGATTGATTGCT 59.243 33.333 0.00 0.00 0.00 3.91
2792 3660 7.756722 ACCTTCTTAAAATTCGATTGATTGCTG 59.243 33.333 0.00 0.00 0.00 4.41
2793 3661 7.253883 CCTTCTTAAAATTCGATTGATTGCTGC 60.254 37.037 0.00 0.00 0.00 5.25
2838 3712 7.878477 TTTAAGAAGGTATTATATGGTCGCG 57.122 36.000 0.00 0.00 0.00 5.87
2874 3750 7.715249 TCAAATATATTCCCTGCTGACTACAAC 59.285 37.037 0.00 0.00 0.00 3.32
2951 3830 0.545171 CTCTGATGCCACCAGGTCAT 59.455 55.000 0.00 0.00 37.19 3.06
2982 3861 4.185394 TGTAACACGTGTTGATTCTGTGT 58.815 39.130 37.43 14.89 45.01 3.72
3098 6984 5.724328 CATACTCTGGACTCTGCACTTAAA 58.276 41.667 0.00 0.00 0.00 1.52
3119 7007 0.886563 GACAAGAGCTGGCTGCAATT 59.113 50.000 18.84 9.41 45.94 2.32
3120 7008 0.601558 ACAAGAGCTGGCTGCAATTG 59.398 50.000 22.68 22.68 45.94 2.32
3481 7478 2.618794 TCCTTGTCAAATTGGCCCAAT 58.381 42.857 2.23 2.23 35.39 3.16
3497 7495 3.877735 GCCCAATCCATCTGGTTACTGTT 60.878 47.826 0.00 0.00 36.34 3.16
3545 7557 7.456684 CAGTTACTGCTGTAGTCACATATTC 57.543 40.000 11.79 0.00 40.89 1.75
3621 7633 6.605119 AGTTAGGGATCCCATGAAGTTATTG 58.395 40.000 32.69 0.00 38.92 1.90
3637 7649 6.360370 AGTTATTGTGTAGTGATGTCTGGT 57.640 37.500 0.00 0.00 0.00 4.00
3748 8516 4.157246 ACTACCATTTTCCCCTTTTGTCC 58.843 43.478 0.00 0.00 0.00 4.02
3895 8665 6.598753 AATTCGTTCTTACATCGTAATGGG 57.401 37.500 0.00 0.00 37.19 4.00
3959 8730 1.604593 GCCTGCACCCACATTCAGT 60.605 57.895 0.00 0.00 0.00 3.41
4069 8842 4.949966 ACTAGGAGTAGGACTGGAGAAA 57.050 45.455 0.00 0.00 0.00 2.52
4070 8843 5.475398 ACTAGGAGTAGGACTGGAGAAAT 57.525 43.478 0.00 0.00 0.00 2.17
4071 8844 5.205056 ACTAGGAGTAGGACTGGAGAAATG 58.795 45.833 0.00 0.00 0.00 2.32
4161 8934 4.229123 AGAATTCAGGACATGGTTCCATCT 59.771 41.667 8.44 0.00 38.25 2.90
4177 8950 8.849168 TGGTTCCATCTATATTTAATGCTGTTG 58.151 33.333 0.00 0.00 0.00 3.33
4190 8963 1.350684 TGCTGTTGGCCTGATAAGTCA 59.649 47.619 3.32 0.00 40.92 3.41
4206 8979 4.336889 AAGTCAAGTTGAAGATGTCCGA 57.663 40.909 7.25 0.00 0.00 4.55
4227 9000 4.192317 GACTGAGAACCAAGTGTTGACTT 58.808 43.478 0.00 0.00 43.63 3.01
4273 9046 2.936919 TGGGATGAGATATGGTGCAC 57.063 50.000 8.80 8.80 0.00 4.57
4311 9084 6.268847 GGATCCAGTAATGAGTAGGAATGTCT 59.731 42.308 6.95 0.00 31.17 3.41
4320 9093 3.515901 GAGTAGGAATGTCTGAACAGGGT 59.484 47.826 1.93 0.00 39.20 4.34
4329 9102 1.970917 CTGAACAGGGTCGAATGCGC 61.971 60.000 0.00 0.00 37.46 6.09
4357 9130 3.427773 GGTGTCTAGACGCTTAACCAGAG 60.428 52.174 30.03 0.00 41.31 3.35
4417 9190 9.443323 TCAGATAACCGAATGACTAAAAATTGA 57.557 29.630 0.00 0.00 0.00 2.57
4418 9191 9.708222 CAGATAACCGAATGACTAAAAATTGAG 57.292 33.333 0.00 0.00 0.00 3.02
4419 9192 9.667107 AGATAACCGAATGACTAAAAATTGAGA 57.333 29.630 0.00 0.00 0.00 3.27
4420 9193 9.704098 GATAACCGAATGACTAAAAATTGAGAC 57.296 33.333 0.00 0.00 0.00 3.36
4676 9466 1.226802 CAGACATCTCCCTCGTGCG 60.227 63.158 0.00 0.00 0.00 5.34
4679 9469 2.279120 CATCTCCCTCGTGCGCTC 60.279 66.667 9.73 3.51 0.00 5.03
4692 9482 2.989639 CGCTCACTCATTCCCCCA 59.010 61.111 0.00 0.00 0.00 4.96
4702 9492 4.284234 CACTCATTCCCCCATTTGTTTTCT 59.716 41.667 0.00 0.00 0.00 2.52
4786 9576 4.100279 TGAATCTGCTAGGGAGTCGATA 57.900 45.455 0.00 0.00 31.50 2.92
4873 9663 1.353694 AGGAAGACAAAGCTGCCTGAT 59.646 47.619 6.36 0.00 42.63 2.90
4897 9687 1.284982 CTTCGACGCCCTGAACTGTG 61.285 60.000 0.00 0.00 0.00 3.66
4899 9689 1.174078 TCGACGCCCTGAACTGTGTA 61.174 55.000 0.00 0.00 0.00 2.90
4900 9690 1.007336 CGACGCCCTGAACTGTGTAC 61.007 60.000 0.00 0.00 0.00 2.90
4901 9691 0.317479 GACGCCCTGAACTGTGTACT 59.683 55.000 0.00 0.00 0.00 2.73
4902 9692 0.033504 ACGCCCTGAACTGTGTACTG 59.966 55.000 0.00 0.00 0.00 2.74
4905 9695 1.291877 CCCTGAACTGTGTACTGCGC 61.292 60.000 0.00 0.00 0.00 6.09
4906 9696 0.599991 CCTGAACTGTGTACTGCGCA 60.600 55.000 10.98 10.98 36.06 6.09
4966 9756 2.408271 ATGCACACTGATTGATCCGT 57.592 45.000 0.00 0.00 0.00 4.69
4967 9757 1.441738 TGCACACTGATTGATCCGTG 58.558 50.000 12.21 12.21 44.38 4.94
4968 9758 1.001860 TGCACACTGATTGATCCGTGA 59.998 47.619 18.40 0.00 42.37 4.35
4969 9759 2.283298 GCACACTGATTGATCCGTGAT 58.717 47.619 18.40 4.49 42.37 3.06
4970 9760 2.286294 GCACACTGATTGATCCGTGATC 59.714 50.000 18.40 6.87 42.37 2.92
4971 9761 3.524541 CACACTGATTGATCCGTGATCA 58.475 45.455 18.40 11.18 45.78 2.92
4976 9804 4.842292 TGATCCGTGATCAGCAGC 57.158 55.556 11.18 0.00 43.11 5.25
4985 9813 0.822121 TGATCAGCAGCCATCCATGC 60.822 55.000 0.00 0.00 42.87 4.06
5021 9849 1.270826 ACCTGATGTGTCTGTCGTCTG 59.729 52.381 0.00 0.00 0.00 3.51
5022 9850 1.541588 CCTGATGTGTCTGTCGTCTGA 59.458 52.381 0.00 0.00 0.00 3.27
5023 9851 2.029918 CCTGATGTGTCTGTCGTCTGAA 60.030 50.000 0.00 0.00 0.00 3.02
5032 9860 3.003897 GTCTGTCGTCTGAAACTCTGACT 59.996 47.826 10.66 0.00 41.39 3.41
5033 9861 3.632604 TCTGTCGTCTGAAACTCTGACTT 59.367 43.478 10.66 0.00 41.39 3.01
5056 9884 7.917505 ACTTCAACTCTTGTTTTTAGATGCTTG 59.082 33.333 0.00 0.00 33.52 4.01
5058 9886 7.417612 TCAACTCTTGTTTTTAGATGCTTGTC 58.582 34.615 0.00 0.00 33.52 3.18
5059 9887 7.283127 TCAACTCTTGTTTTTAGATGCTTGTCT 59.717 33.333 0.00 0.00 33.52 3.41
5060 9888 7.573968 ACTCTTGTTTTTAGATGCTTGTCTT 57.426 32.000 0.00 0.00 0.00 3.01
5070 9898 3.999663 AGATGCTTGTCTTACTGCAACTC 59.000 43.478 0.00 0.00 38.96 3.01
5080 9908 1.153667 CTGCAACTCTCGAGGAGGC 60.154 63.158 13.56 11.89 45.83 4.70
5092 9920 1.734465 CGAGGAGGCTTTGCTTGTTAG 59.266 52.381 0.00 0.00 0.00 2.34
5093 9921 2.784347 GAGGAGGCTTTGCTTGTTAGT 58.216 47.619 0.00 0.00 0.00 2.24
5094 9922 3.616560 CGAGGAGGCTTTGCTTGTTAGTA 60.617 47.826 0.00 0.00 0.00 1.82
5096 9924 3.072476 AGGAGGCTTTGCTTGTTAGTACA 59.928 43.478 0.00 0.00 0.00 2.90
5102 9930 6.209391 AGGCTTTGCTTGTTAGTACAAATCAT 59.791 34.615 0.00 0.00 43.33 2.45
5113 9941 9.190858 TGTTAGTACAAATCATTGCAAAACATC 57.809 29.630 1.71 0.00 40.34 3.06
5114 9942 9.190858 GTTAGTACAAATCATTGCAAAACATCA 57.809 29.630 1.71 0.00 40.34 3.07
5116 9944 8.246908 AGTACAAATCATTGCAAAACATCATG 57.753 30.769 1.71 0.00 40.34 3.07
5117 9945 7.874016 AGTACAAATCATTGCAAAACATCATGT 59.126 29.630 1.71 6.10 40.34 3.21
5118 9946 6.893759 ACAAATCATTGCAAAACATCATGTG 58.106 32.000 1.71 0.00 40.34 3.21
5119 9947 5.539582 AATCATTGCAAAACATCATGTGC 57.460 34.783 1.71 0.00 37.51 4.57
5122 9950 0.314618 TGCAAAACATCATGTGCGCT 59.685 45.000 9.73 0.00 39.92 5.92
5124 9952 1.666599 GCAAAACATCATGTGCGCTCA 60.667 47.619 15.29 15.29 0.00 4.26
5125 9953 2.871133 CAAAACATCATGTGCGCTCAT 58.129 42.857 18.69 18.69 0.00 2.90
5126 9954 2.554806 AAACATCATGTGCGCTCATG 57.445 45.000 35.12 35.12 44.36 3.07
5128 9956 1.012086 ACATCATGTGCGCTCATGTC 58.988 50.000 37.17 12.51 43.70 3.06
5130 9958 1.260825 CATCATGTGCGCTCATGTCTC 59.739 52.381 37.17 9.86 43.70 3.36
5131 9959 0.460811 TCATGTGCGCTCATGTCTCC 60.461 55.000 37.17 6.92 43.70 3.71
5132 9960 1.520120 ATGTGCGCTCATGTCTCCG 60.520 57.895 23.05 0.00 0.00 4.63
5133 9961 2.125912 GTGCGCTCATGTCTCCGT 60.126 61.111 9.73 0.00 0.00 4.69
5134 9962 1.738099 GTGCGCTCATGTCTCCGTT 60.738 57.895 9.73 0.00 0.00 4.44
5135 9963 1.446099 TGCGCTCATGTCTCCGTTC 60.446 57.895 9.73 0.00 0.00 3.95
5136 9964 1.446099 GCGCTCATGTCTCCGTTCA 60.446 57.895 0.00 0.00 0.00 3.18
5137 9965 0.807667 GCGCTCATGTCTCCGTTCAT 60.808 55.000 0.00 0.00 0.00 2.57
5138 9966 0.926155 CGCTCATGTCTCCGTTCATG 59.074 55.000 0.00 0.00 41.64 3.07
5139 9967 0.654683 GCTCATGTCTCCGTTCATGC 59.345 55.000 0.00 0.00 40.54 4.06
5140 9968 0.926155 CTCATGTCTCCGTTCATGCG 59.074 55.000 0.00 0.00 40.54 4.73
5141 9969 0.530288 TCATGTCTCCGTTCATGCGA 59.470 50.000 0.00 0.00 40.54 5.10
5142 9970 0.647410 CATGTCTCCGTTCATGCGAC 59.353 55.000 0.00 0.00 35.72 5.19
5143 9971 0.460284 ATGTCTCCGTTCATGCGACC 60.460 55.000 0.00 0.00 0.00 4.79
5144 9972 1.080093 GTCTCCGTTCATGCGACCA 60.080 57.895 0.00 0.00 0.00 4.02
5145 9973 0.669318 GTCTCCGTTCATGCGACCAA 60.669 55.000 0.00 0.00 0.00 3.67
5146 9974 0.034198 TCTCCGTTCATGCGACCAAA 59.966 50.000 0.00 0.00 0.00 3.28
5147 9975 1.086696 CTCCGTTCATGCGACCAAAT 58.913 50.000 0.00 0.00 0.00 2.32
5148 9976 0.801872 TCCGTTCATGCGACCAAATG 59.198 50.000 0.00 0.00 0.00 2.32
5149 9977 0.179166 CCGTTCATGCGACCAAATGG 60.179 55.000 0.00 0.00 42.17 3.16
5150 9978 0.801872 CGTTCATGCGACCAAATGGA 59.198 50.000 6.42 0.00 38.94 3.41
5151 9979 1.198867 CGTTCATGCGACCAAATGGAA 59.801 47.619 6.42 0.00 38.94 3.53
5152 9980 2.159393 CGTTCATGCGACCAAATGGAAT 60.159 45.455 6.42 0.00 38.94 3.01
5153 9981 3.673052 CGTTCATGCGACCAAATGGAATT 60.673 43.478 6.42 0.00 38.98 2.17
5154 9982 4.438065 CGTTCATGCGACCAAATGGAATTA 60.438 41.667 6.42 0.00 33.67 1.40
5155 9983 4.898829 TCATGCGACCAAATGGAATTAG 57.101 40.909 6.42 0.00 33.67 1.73
5156 9984 3.066621 TCATGCGACCAAATGGAATTAGC 59.933 43.478 6.42 4.74 33.67 3.09
5157 9985 1.748493 TGCGACCAAATGGAATTAGCC 59.252 47.619 6.42 0.00 33.67 3.93
5158 9986 1.748493 GCGACCAAATGGAATTAGCCA 59.252 47.619 6.42 0.00 43.23 4.75
5159 9987 2.165437 GCGACCAAATGGAATTAGCCAA 59.835 45.455 6.42 0.00 42.16 4.52
5160 9988 3.367910 GCGACCAAATGGAATTAGCCAAA 60.368 43.478 6.42 0.00 42.16 3.28
5161 9989 4.423732 CGACCAAATGGAATTAGCCAAAG 58.576 43.478 6.42 0.00 42.16 2.77
5162 9990 4.157656 CGACCAAATGGAATTAGCCAAAGA 59.842 41.667 6.42 0.00 42.16 2.52
5163 9991 5.654497 GACCAAATGGAATTAGCCAAAGAG 58.346 41.667 6.42 0.00 42.16 2.85
5164 9992 4.081476 ACCAAATGGAATTAGCCAAAGAGC 60.081 41.667 6.42 0.00 42.16 4.09
5165 9993 4.081531 CCAAATGGAATTAGCCAAAGAGCA 60.082 41.667 0.00 0.00 42.16 4.26
5169 9997 4.603131 TGGAATTAGCCAAAGAGCAGAAT 58.397 39.130 0.00 0.00 34.31 2.40
5170 9998 5.754782 TGGAATTAGCCAAAGAGCAGAATA 58.245 37.500 0.00 0.00 34.31 1.75
5179 10007 4.479619 CAAAGAGCAGAATAACTTGTGGC 58.520 43.478 0.00 0.00 0.00 5.01
5187 10015 5.675575 GCAGAATAACTTGTGGCATCTCTTG 60.676 44.000 0.00 0.00 0.00 3.02
5202 10030 1.608590 CTCTTGCAATGACCGGTTGTT 59.391 47.619 9.42 3.71 0.00 2.83
5203 10031 2.811431 CTCTTGCAATGACCGGTTGTTA 59.189 45.455 9.42 0.00 0.00 2.41
5214 10042 2.069273 CCGGTTGTTACTTCTCTGCAG 58.931 52.381 7.63 7.63 0.00 4.41
5216 10044 3.589988 CGGTTGTTACTTCTCTGCAGAT 58.410 45.455 18.63 4.63 0.00 2.90
5224 10052 8.087982 TGTTACTTCTCTGCAGATAAACTTTG 57.912 34.615 18.63 6.67 0.00 2.77
5227 10055 6.291377 ACTTCTCTGCAGATAAACTTTGTGA 58.709 36.000 18.63 3.75 0.00 3.58
5229 10057 6.101650 TCTCTGCAGATAAACTTTGTGAGA 57.898 37.500 18.63 2.97 0.00 3.27
5230 10058 6.162079 TCTCTGCAGATAAACTTTGTGAGAG 58.838 40.000 18.63 0.00 0.00 3.20
5233 10061 5.620206 TGCAGATAAACTTTGTGAGAGGAA 58.380 37.500 0.00 0.00 0.00 3.36
5240 10068 5.659440 AACTTTGTGAGAGGAAAAGCAAA 57.341 34.783 0.00 0.00 34.88 3.68
5243 10345 6.101997 ACTTTGTGAGAGGAAAAGCAAAAAG 58.898 36.000 0.00 0.00 40.00 2.27
5258 10360 4.650985 GCAAAAAGCAGAACAACTTTTGG 58.349 39.130 1.84 0.57 43.45 3.28
5259 10361 4.437255 GCAAAAAGCAGAACAACTTTTGGG 60.437 41.667 1.84 0.24 43.45 4.12
5260 10362 3.541996 AAAGCAGAACAACTTTTGGGG 57.458 42.857 0.00 0.00 32.24 4.96
5261 10363 1.413118 AGCAGAACAACTTTTGGGGG 58.587 50.000 0.00 0.00 34.12 5.40
5284 10386 8.208224 GGGGGTTAATGTAAAATGAATTTAGGG 58.792 37.037 0.00 0.00 34.21 3.53
5285 10387 8.208224 GGGGTTAATGTAAAATGAATTTAGGGG 58.792 37.037 0.00 0.00 34.21 4.79
5286 10388 8.208224 GGGTTAATGTAAAATGAATTTAGGGGG 58.792 37.037 0.00 0.00 34.21 5.40
5287 10389 7.713507 GGTTAATGTAAAATGAATTTAGGGGGC 59.286 37.037 0.00 0.00 34.21 5.80
5290 10392 6.232581 TGTAAAATGAATTTAGGGGGCATG 57.767 37.500 0.00 0.00 34.21 4.06
5292 10394 1.720781 ATGAATTTAGGGGGCATGCC 58.279 50.000 29.47 29.47 0.00 4.40
5297 10399 0.033208 TTTAGGGGGCATGCCTGAAG 60.033 55.000 34.70 0.00 36.10 3.02
5298 10400 2.572333 TTAGGGGGCATGCCTGAAGC 62.572 60.000 34.70 18.38 44.14 3.86
5328 10446 7.925483 ACTGTATTGCAAAGCTTCATTTGTTTA 59.075 29.630 1.71 0.00 41.31 2.01
5329 10447 8.654230 TGTATTGCAAAGCTTCATTTGTTTAA 57.346 26.923 1.71 0.00 41.31 1.52
5330 10448 9.102757 TGTATTGCAAAGCTTCATTTGTTTAAA 57.897 25.926 1.71 0.00 41.31 1.52
5331 10449 9.928236 GTATTGCAAAGCTTCATTTGTTTAAAA 57.072 25.926 1.71 0.00 41.31 1.52
5333 10451 7.840342 TGCAAAGCTTCATTTGTTTAAAAGA 57.160 28.000 0.00 0.00 41.31 2.52
5334 10452 8.436046 TGCAAAGCTTCATTTGTTTAAAAGAT 57.564 26.923 0.00 0.00 41.31 2.40
5335 10453 8.550376 TGCAAAGCTTCATTTGTTTAAAAGATC 58.450 29.630 0.00 0.00 41.31 2.75
5336 10454 8.011673 GCAAAGCTTCATTTGTTTAAAAGATCC 58.988 33.333 0.00 0.00 41.31 3.36
5337 10455 9.044150 CAAAGCTTCATTTGTTTAAAAGATCCA 57.956 29.630 0.00 0.00 35.80 3.41
5338 10456 9.783081 AAAGCTTCATTTGTTTAAAAGATCCAT 57.217 25.926 0.00 0.00 0.00 3.41
5339 10457 8.767478 AGCTTCATTTGTTTAAAAGATCCATG 57.233 30.769 0.00 0.00 0.00 3.66
5347 10465 9.540538 TTTGTTTAAAAGATCCATGGGAGATTA 57.459 29.630 13.02 3.10 34.05 1.75
5349 10467 9.540538 TGTTTAAAAGATCCATGGGAGATTAAA 57.459 29.630 13.02 13.74 34.05 1.52
5358 10476 6.681538 TCCATGGGAGATTAAATTTGGATGA 58.318 36.000 13.02 0.00 0.00 2.92
5361 10479 9.092338 CCATGGGAGATTAAATTTGGATGATTA 57.908 33.333 2.85 0.00 0.00 1.75
5376 10497 7.408756 TGGATGATTAAATTGTCTTTGGGAG 57.591 36.000 0.00 0.00 0.00 4.30
5380 10501 8.893563 ATGATTAAATTGTCTTTGGGAGGTTA 57.106 30.769 0.00 0.00 0.00 2.85
5381 10502 8.713708 TGATTAAATTGTCTTTGGGAGGTTAA 57.286 30.769 0.00 0.00 0.00 2.01
5384 10505 6.994421 AAATTGTCTTTGGGAGGTTAATGT 57.006 33.333 0.00 0.00 0.00 2.71
5433 10556 1.340889 GCCAACTGGAATGCAAACTGA 59.659 47.619 0.00 0.00 37.39 3.41
5437 10560 2.936202 ACTGGAATGCAAACTGAGTGT 58.064 42.857 0.00 0.00 0.00 3.55
5438 10561 2.620115 ACTGGAATGCAAACTGAGTGTG 59.380 45.455 0.00 0.00 0.00 3.82
5439 10562 2.620115 CTGGAATGCAAACTGAGTGTGT 59.380 45.455 4.46 0.00 0.00 3.72
5440 10563 2.618241 TGGAATGCAAACTGAGTGTGTC 59.382 45.455 4.46 0.00 0.00 3.67
5441 10564 2.030805 GGAATGCAAACTGAGTGTGTCC 60.031 50.000 4.46 0.00 0.00 4.02
5445 10568 1.331756 GCAAACTGAGTGTGTCCAGTG 59.668 52.381 4.46 0.00 42.25 3.66
5506 10635 0.312102 GCCAGTGCTCAACTTTGTCC 59.688 55.000 0.00 0.00 36.83 4.02
5507 10636 1.972872 CCAGTGCTCAACTTTGTCCT 58.027 50.000 0.00 0.00 36.83 3.85
5508 10637 1.605710 CCAGTGCTCAACTTTGTCCTG 59.394 52.381 0.00 0.00 36.83 3.86
5509 10638 2.292267 CAGTGCTCAACTTTGTCCTGT 58.708 47.619 0.00 0.00 36.83 4.00
5512 10641 1.312815 GCTCAACTTTGTCCTGTGCT 58.687 50.000 0.00 0.00 0.00 4.40
5513 10642 1.265365 GCTCAACTTTGTCCTGTGCTC 59.735 52.381 0.00 0.00 0.00 4.26
5514 10643 2.843701 CTCAACTTTGTCCTGTGCTCT 58.156 47.619 0.00 0.00 0.00 4.09
5515 10644 2.547211 CTCAACTTTGTCCTGTGCTCTG 59.453 50.000 0.00 0.00 0.00 3.35
5516 10645 2.092968 TCAACTTTGTCCTGTGCTCTGT 60.093 45.455 0.00 0.00 0.00 3.41
5517 10646 1.959042 ACTTTGTCCTGTGCTCTGTG 58.041 50.000 0.00 0.00 0.00 3.66
5518 10647 0.590195 CTTTGTCCTGTGCTCTGTGC 59.410 55.000 0.00 0.00 43.25 4.57
5519 10648 1.159713 TTTGTCCTGTGCTCTGTGCG 61.160 55.000 0.00 0.00 46.63 5.34
5525 10654 3.403277 GTGCTCTGTGCGCCTATG 58.597 61.111 4.18 0.00 45.73 2.23
5526 10655 1.448540 GTGCTCTGTGCGCCTATGT 60.449 57.895 4.18 0.00 45.73 2.29
5527 10656 1.448365 TGCTCTGTGCGCCTATGTG 60.448 57.895 4.18 0.00 46.63 3.21
5528 10657 2.176273 GCTCTGTGCGCCTATGTGG 61.176 63.158 4.18 0.00 39.35 4.17
5529 10658 1.219124 CTCTGTGCGCCTATGTGGT 59.781 57.895 4.18 0.00 38.35 4.16
5530 10659 0.459899 CTCTGTGCGCCTATGTGGTA 59.540 55.000 4.18 0.00 38.35 3.25
5531 10660 0.459899 TCTGTGCGCCTATGTGGTAG 59.540 55.000 4.18 0.00 38.35 3.18
5540 10669 1.692519 CCTATGTGGTAGGCTGGTACC 59.307 57.143 4.43 4.43 43.44 3.34
5541 10670 2.679082 CTATGTGGTAGGCTGGTACCT 58.321 52.381 14.36 0.00 42.79 3.08
5542 10671 1.204146 ATGTGGTAGGCTGGTACCTG 58.796 55.000 14.36 14.26 42.79 4.00
5543 10672 0.907704 TGTGGTAGGCTGGTACCTGG 60.908 60.000 19.31 10.45 42.79 4.45
5544 10673 0.908180 GTGGTAGGCTGGTACCTGGT 60.908 60.000 19.31 4.05 42.79 4.00
5545 10674 0.711782 TGGTAGGCTGGTACCTGGTA 59.288 55.000 19.31 1.49 42.79 3.25
5546 10675 1.342674 TGGTAGGCTGGTACCTGGTAG 60.343 57.143 19.31 6.76 42.79 3.18
5547 10676 0.751452 GTAGGCTGGTACCTGGTAGC 59.249 60.000 25.25 25.25 41.34 3.58
5549 10678 3.721868 GCTGGTACCTGGTAGCCA 58.278 61.111 27.86 23.48 35.90 4.75
5550 10679 1.221021 GCTGGTACCTGGTAGCCAC 59.779 63.158 27.86 18.20 35.90 5.01
5572 10701 4.795278 ACCGTCGTTTACTCGTATCAATTC 59.205 41.667 0.00 0.00 0.00 2.17
5586 10715 6.978659 TCGTATCAATTCATCAGTTACAGACC 59.021 38.462 0.00 0.00 0.00 3.85
5588 10717 8.135529 CGTATCAATTCATCAGTTACAGACCTA 58.864 37.037 0.00 0.00 0.00 3.08
5589 10718 9.250624 GTATCAATTCATCAGTTACAGACCTAC 57.749 37.037 0.00 0.00 0.00 3.18
5590 10719 7.239763 TCAATTCATCAGTTACAGACCTACA 57.760 36.000 0.00 0.00 0.00 2.74
5591 10720 7.323420 TCAATTCATCAGTTACAGACCTACAG 58.677 38.462 0.00 0.00 0.00 2.74
5592 10721 7.178451 TCAATTCATCAGTTACAGACCTACAGA 59.822 37.037 0.00 0.00 0.00 3.41
5593 10722 5.899120 TCATCAGTTACAGACCTACAGAC 57.101 43.478 0.00 0.00 0.00 3.51
5594 10723 4.705507 TCATCAGTTACAGACCTACAGACC 59.294 45.833 0.00 0.00 0.00 3.85
5630 10772 2.101415 GCCAAATAACTTGCTGGATCCC 59.899 50.000 9.90 0.00 33.27 3.85
5647 10795 6.707290 TGGATCCCGTATCACCTTATTTATG 58.293 40.000 9.90 0.00 36.20 1.90
5670 10818 4.606961 ACGAAAATAAACAGCACAACCAG 58.393 39.130 0.00 0.00 0.00 4.00
5686 10834 6.438763 CACAACCAGGTTAAGAAATCTTGAC 58.561 40.000 3.89 9.01 40.47 3.18
5695 10843 9.354673 AGGTTAAGAAATCTTGACATCTCAAAA 57.645 29.630 16.76 0.00 42.24 2.44
5701 10849 7.601508 AGAAATCTTGACATCTCAAAAATTGCC 59.398 33.333 0.00 0.00 35.92 4.52
5702 10850 5.787953 TCTTGACATCTCAAAAATTGCCA 57.212 34.783 0.00 0.00 35.92 4.92
5711 10859 8.358148 ACATCTCAAAAATTGCCATATCAGATC 58.642 33.333 0.00 0.00 0.00 2.75
5712 10860 7.885009 TCTCAAAAATTGCCATATCAGATCA 57.115 32.000 0.00 0.00 0.00 2.92
5752 10900 4.565166 TGTTTGACGATTATACGCCAGAAG 59.435 41.667 0.00 0.00 36.70 2.85
5753 10901 2.739292 TGACGATTATACGCCAGAAGC 58.261 47.619 0.00 0.00 36.70 3.86
5754 10902 2.059541 GACGATTATACGCCAGAAGCC 58.940 52.381 0.00 0.00 38.78 4.35
5756 10904 2.037251 ACGATTATACGCCAGAAGCCAT 59.963 45.455 0.00 0.00 38.78 4.40
5758 10906 3.615110 CGATTATACGCCAGAAGCCATCT 60.615 47.826 0.00 0.00 39.68 2.90
5759 10907 3.838244 TTATACGCCAGAAGCCATCTT 57.162 42.857 0.00 0.00 35.73 2.40
5810 10958 2.168106 AGCACATCTGTCCTCTAAGCTG 59.832 50.000 0.00 0.00 0.00 4.24
5813 10964 4.825422 CACATCTGTCCTCTAAGCTGAAA 58.175 43.478 0.00 0.00 0.00 2.69
5874 11029 4.213564 AGATCCTAAACAGCAACAGGAG 57.786 45.455 0.00 0.00 40.43 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.066918 CGACCCGTATTCTTCCCCG 59.933 63.158 0.00 0.00 0.00 5.73
182 183 7.287061 TGTGGAGGATCTTCTAGAAACAAAAA 58.713 34.615 6.63 0.00 33.73 1.94
183 184 6.837312 TGTGGAGGATCTTCTAGAAACAAAA 58.163 36.000 6.63 0.00 33.73 2.44
184 185 6.433847 TGTGGAGGATCTTCTAGAAACAAA 57.566 37.500 6.63 0.00 33.73 2.83
185 186 6.627087 ATGTGGAGGATCTTCTAGAAACAA 57.373 37.500 6.63 0.00 33.73 2.83
186 187 7.921041 ATATGTGGAGGATCTTCTAGAAACA 57.079 36.000 6.63 5.78 33.73 2.83
187 188 9.050601 CAAATATGTGGAGGATCTTCTAGAAAC 57.949 37.037 6.63 0.00 33.73 2.78
190 191 7.255625 CGACAAATATGTGGAGGATCTTCTAGA 60.256 40.741 4.68 0.00 40.74 2.43
325 335 3.771160 GCGGGCGGAGAGAAGGAA 61.771 66.667 0.00 0.00 0.00 3.36
429 452 0.251653 TAGGCTCTCTGGTCGTGGTT 60.252 55.000 0.00 0.00 0.00 3.67
433 456 1.395826 GGCATAGGCTCTCTGGTCGT 61.396 60.000 0.00 0.00 40.87 4.34
434 457 1.365633 GGCATAGGCTCTCTGGTCG 59.634 63.158 0.00 0.00 40.87 4.79
435 458 1.365633 CGGCATAGGCTCTCTGGTC 59.634 63.158 0.00 0.00 40.87 4.02
436 459 2.136878 CCGGCATAGGCTCTCTGGT 61.137 63.158 0.00 0.00 40.87 4.00
437 460 2.739784 CCGGCATAGGCTCTCTGG 59.260 66.667 0.00 0.00 40.87 3.86
495 519 4.308458 CGGCCGTGGTTGGTGAGA 62.308 66.667 19.50 0.00 0.00 3.27
589 637 6.202188 ACTTATACAAACAGCGGCACATATAC 59.798 38.462 1.45 0.00 0.00 1.47
590 638 6.201997 CACTTATACAAACAGCGGCACATATA 59.798 38.462 1.45 0.00 0.00 0.86
591 639 5.007626 CACTTATACAAACAGCGGCACATAT 59.992 40.000 1.45 0.00 0.00 1.78
592 640 4.331443 CACTTATACAAACAGCGGCACATA 59.669 41.667 1.45 0.00 0.00 2.29
593 641 3.126858 CACTTATACAAACAGCGGCACAT 59.873 43.478 1.45 0.00 0.00 3.21
594 642 2.482336 CACTTATACAAACAGCGGCACA 59.518 45.455 1.45 0.00 0.00 4.57
595 643 2.727916 GCACTTATACAAACAGCGGCAC 60.728 50.000 1.45 0.00 0.00 5.01
596 644 1.466950 GCACTTATACAAACAGCGGCA 59.533 47.619 1.45 0.00 0.00 5.69
597 645 1.737793 AGCACTTATACAAACAGCGGC 59.262 47.619 0.00 0.00 0.00 6.53
598 646 2.742053 ACAGCACTTATACAAACAGCGG 59.258 45.455 0.00 0.00 0.00 5.52
599 647 4.151070 CAACAGCACTTATACAAACAGCG 58.849 43.478 0.00 0.00 0.00 5.18
600 648 5.108385 ACAACAGCACTTATACAAACAGC 57.892 39.130 0.00 0.00 0.00 4.40
601 649 6.414694 CACAACAACAGCACTTATACAAACAG 59.585 38.462 0.00 0.00 0.00 3.16
602 650 6.127869 ACACAACAACAGCACTTATACAAACA 60.128 34.615 0.00 0.00 0.00 2.83
603 651 6.262601 ACACAACAACAGCACTTATACAAAC 58.737 36.000 0.00 0.00 0.00 2.93
610 659 4.697828 TCAAGAACACAACAACAGCACTTA 59.302 37.500 0.00 0.00 0.00 2.24
619 668 9.508642 TGGTTATATACATCAAGAACACAACAA 57.491 29.630 0.00 0.00 0.00 2.83
656 869 8.340618 ACTAACTTCTATGCAACATGTGAATT 57.659 30.769 0.00 0.00 0.00 2.17
692 913 9.685276 AATAGGATGAACATTGTACTTTGATGA 57.315 29.630 0.00 0.00 0.00 2.92
720 1023 3.839051 TCACATGAGAGACTCAGTTCG 57.161 47.619 5.02 0.00 44.08 3.95
724 1027 5.082251 TGGAATTCACATGAGAGACTCAG 57.918 43.478 7.93 3.13 44.08 3.35
773 1078 5.818136 TTGAAACTGAAACTGAACTCTGG 57.182 39.130 0.00 0.00 0.00 3.86
776 1081 9.950680 TTTGATATTGAAACTGAAACTGAACTC 57.049 29.630 0.00 0.00 0.00 3.01
797 1108 9.430399 AAATCTCCCAGACATTGATAATTTGAT 57.570 29.630 0.00 0.00 0.00 2.57
798 1109 8.689061 CAAATCTCCCAGACATTGATAATTTGA 58.311 33.333 0.00 0.00 34.11 2.69
799 1110 8.689061 TCAAATCTCCCAGACATTGATAATTTG 58.311 33.333 0.00 0.00 32.08 2.32
800 1111 8.827832 TCAAATCTCCCAGACATTGATAATTT 57.172 30.769 0.00 0.00 32.08 1.82
842 1153 6.781138 TCCGTTCGGATTTTGATATTGAAAG 58.219 36.000 10.00 0.00 0.00 2.62
855 1175 1.481871 TCTAAGGCTCCGTTCGGATT 58.518 50.000 14.34 8.78 33.34 3.01
860 1192 4.756502 AGTAACATTCTAAGGCTCCGTTC 58.243 43.478 0.00 0.00 0.00 3.95
897 1232 6.106003 ACTCACTCAACAAATTTGGTTTTCC 58.894 36.000 21.74 0.00 41.14 3.13
899 1234 6.371271 CCAACTCACTCAACAAATTTGGTTTT 59.629 34.615 21.74 5.00 0.00 2.43
901 1236 5.186797 TCCAACTCACTCAACAAATTTGGTT 59.813 36.000 21.74 10.50 34.94 3.67
912 1247 4.405680 TGAGAGAAAGTCCAACTCACTCAA 59.594 41.667 0.00 2.84 34.84 3.02
937 1272 1.202510 GGAACAATTTGCACTGTGCCA 60.203 47.619 28.17 16.39 44.23 4.92
942 1277 2.512485 TGCAGGAACAATTTGCACTG 57.488 45.000 0.00 9.80 42.41 3.66
957 1292 0.974010 ATTCCCAACCCTGCATGCAG 60.974 55.000 35.88 35.88 43.26 4.41
962 1297 1.367346 TCACTATTCCCAACCCTGCA 58.633 50.000 0.00 0.00 0.00 4.41
964 1299 3.200825 ACAGATCACTATTCCCAACCCTG 59.799 47.826 0.00 0.00 0.00 4.45
965 1300 3.456277 GACAGATCACTATTCCCAACCCT 59.544 47.826 0.00 0.00 0.00 4.34
966 1301 3.433740 GGACAGATCACTATTCCCAACCC 60.434 52.174 0.00 0.00 0.00 4.11
967 1302 3.433740 GGGACAGATCACTATTCCCAACC 60.434 52.174 10.63 0.00 42.63 3.77
969 1304 3.459828 TGGGACAGATCACTATTCCCAA 58.540 45.455 14.21 2.95 46.23 4.12
970 1305 2.771943 GTGGGACAGATCACTATTCCCA 59.228 50.000 13.10 13.10 46.65 4.37
971 1306 3.041946 AGTGGGACAGATCACTATTCCC 58.958 50.000 9.19 9.19 41.80 3.97
973 1308 4.080863 ACCAAGTGGGACAGATCACTATTC 60.081 45.833 1.69 0.00 42.67 1.75
976 1315 2.567169 CACCAAGTGGGACAGATCACTA 59.433 50.000 1.69 0.00 42.67 2.74
1142 1510 3.319755 CATTCCAACACCATTTGCAGTC 58.680 45.455 0.00 0.00 0.00 3.51
1160 1528 0.250209 CAGCGCCAGGATCTAGCATT 60.250 55.000 2.29 0.00 0.00 3.56
1178 1546 5.474578 AGATGCTTACACTGTTTCTCTCA 57.525 39.130 0.00 0.00 0.00 3.27
1211 1613 8.830201 AGCAGATAAACATAAAATGCACAAAA 57.170 26.923 0.00 0.00 34.71 2.44
1223 1625 8.836413 GCAGGTTTAACATAGCAGATAAACATA 58.164 33.333 14.11 0.00 38.04 2.29
1224 1626 7.557719 AGCAGGTTTAACATAGCAGATAAACAT 59.442 33.333 14.11 7.88 38.04 2.71
1225 1627 6.884295 AGCAGGTTTAACATAGCAGATAAACA 59.116 34.615 14.11 0.00 38.04 2.83
1226 1628 7.065803 TCAGCAGGTTTAACATAGCAGATAAAC 59.934 37.037 0.00 7.64 36.56 2.01
1229 1631 6.233905 TCAGCAGGTTTAACATAGCAGATA 57.766 37.500 0.00 0.00 0.00 1.98
1231 1633 4.551702 TCAGCAGGTTTAACATAGCAGA 57.448 40.909 0.00 0.00 0.00 4.26
1232 1634 4.036027 CCATCAGCAGGTTTAACATAGCAG 59.964 45.833 0.00 0.00 0.00 4.24
1233 1635 3.947196 CCATCAGCAGGTTTAACATAGCA 59.053 43.478 0.00 0.00 0.00 3.49
1234 1636 3.316308 CCCATCAGCAGGTTTAACATAGC 59.684 47.826 0.00 0.00 0.00 2.97
1235 1637 3.316308 GCCCATCAGCAGGTTTAACATAG 59.684 47.826 0.00 0.00 0.00 2.23
1236 1638 3.287222 GCCCATCAGCAGGTTTAACATA 58.713 45.455 0.00 0.00 0.00 2.29
1237 1639 2.102578 GCCCATCAGCAGGTTTAACAT 58.897 47.619 0.00 0.00 0.00 2.71
1238 1640 1.202989 TGCCCATCAGCAGGTTTAACA 60.203 47.619 0.00 0.00 38.00 2.41
1239 1641 1.544724 TGCCCATCAGCAGGTTTAAC 58.455 50.000 0.00 0.00 38.00 2.01
1259 1672 5.994250 ACCAGATAAAGAATTAGCAGCAGA 58.006 37.500 0.00 0.00 29.74 4.26
1267 1680 8.383175 AGACCAAACAGACCAGATAAAGAATTA 58.617 33.333 0.00 0.00 0.00 1.40
1276 1689 3.808618 GCTCAAGACCAAACAGACCAGAT 60.809 47.826 0.00 0.00 0.00 2.90
1290 1703 6.545504 TGTGAGAAGTAATTTGCTCAAGAC 57.454 37.500 0.00 0.00 38.92 3.01
1312 1725 3.969899 TCATCTAACTAGTCAGCGCATG 58.030 45.455 11.47 5.22 0.00 4.06
1315 1728 3.971150 ACATCATCTAACTAGTCAGCGC 58.029 45.455 0.00 0.00 0.00 5.92
1340 1753 3.294816 GCACGATGCATCTATCTCAGA 57.705 47.619 23.73 0.00 44.26 3.27
1386 1799 1.611977 CACCTAGCGTTCCATATCGGA 59.388 52.381 0.00 0.00 44.40 4.55
1450 1863 5.712152 AAACAAAGCATCTAACTCCAAGG 57.288 39.130 0.00 0.00 0.00 3.61
1519 1934 3.157087 TCTCTTTTCATTGGAACCAGGC 58.843 45.455 0.00 0.00 31.35 4.85
1645 2060 0.391263 GGGTGAAGCAAGGAGGTACG 60.391 60.000 0.00 0.00 0.00 3.67
1675 2090 7.365741 ACAGATGCAAAACAGAATACAAAGAG 58.634 34.615 0.00 0.00 0.00 2.85
1747 2192 4.781258 GCGTCGCCTTAAAAACATAGCTAC 60.781 45.833 5.75 0.00 0.00 3.58
1748 2193 3.307782 GCGTCGCCTTAAAAACATAGCTA 59.692 43.478 5.75 0.00 0.00 3.32
1749 2194 2.095372 GCGTCGCCTTAAAAACATAGCT 59.905 45.455 5.75 0.00 0.00 3.32
1750 2195 2.437626 GCGTCGCCTTAAAAACATAGC 58.562 47.619 5.75 0.00 0.00 2.97
1751 2196 3.047613 GGCGTCGCCTTAAAAACATAG 57.952 47.619 28.98 0.00 46.69 2.23
1770 2215 1.408453 CCCTCCCTAAGGCGGTAAGG 61.408 65.000 0.00 0.00 44.71 2.69
1771 2216 1.408453 CCCCTCCCTAAGGCGGTAAG 61.408 65.000 0.00 0.00 44.71 2.34
1772 2217 1.383525 CCCCTCCCTAAGGCGGTAA 60.384 63.158 0.00 0.00 44.71 2.85
1773 2218 2.284493 CCCCTCCCTAAGGCGGTA 59.716 66.667 0.00 0.00 44.71 4.02
1774 2219 4.817909 CCCCCTCCCTAAGGCGGT 62.818 72.222 0.00 0.00 44.71 5.68
1816 2261 4.467084 TCCAAAGCGCCCGCCTAG 62.467 66.667 2.29 0.00 43.17 3.02
1817 2262 4.770874 GTCCAAAGCGCCCGCCTA 62.771 66.667 2.29 0.00 43.17 3.93
1825 2270 3.195698 GCCTAGGCGTCCAAAGCG 61.196 66.667 20.16 0.00 35.00 4.68
1843 2288 0.456142 GAAAATCGACCGCTTTGGGC 60.456 55.000 0.00 0.00 45.45 5.36
1844 2289 0.170339 GGAAAATCGACCGCTTTGGG 59.830 55.000 0.00 0.00 44.64 4.12
1845 2290 0.878416 TGGAAAATCGACCGCTTTGG 59.122 50.000 0.00 0.00 46.41 3.28
1846 2291 2.697431 TTGGAAAATCGACCGCTTTG 57.303 45.000 0.00 0.00 0.00 2.77
1847 2292 2.607038 GCTTTGGAAAATCGACCGCTTT 60.607 45.455 0.00 0.00 0.00 3.51
1848 2293 1.068541 GCTTTGGAAAATCGACCGCTT 60.069 47.619 0.00 0.00 0.00 4.68
1849 2294 0.521735 GCTTTGGAAAATCGACCGCT 59.478 50.000 0.00 0.00 0.00 5.52
1850 2295 0.793104 CGCTTTGGAAAATCGACCGC 60.793 55.000 0.00 0.00 0.00 5.68
1851 2296 0.179200 CCGCTTTGGAAAATCGACCG 60.179 55.000 0.00 0.00 42.00 4.79
1852 2297 1.161843 TCCGCTTTGGAAAATCGACC 58.838 50.000 0.00 0.00 46.38 4.79
1862 2307 4.803908 GCTCCCCCTCCGCTTTGG 62.804 72.222 0.00 0.00 40.09 3.28
1870 2315 4.516195 GTCGAAGCGCTCCCCCTC 62.516 72.222 12.06 2.47 0.00 4.30
1907 2352 0.174162 TAAAGCGTCCCTAAGGCGAC 59.826 55.000 0.00 0.00 43.57 5.19
1908 2353 0.896923 TTAAAGCGTCCCTAAGGCGA 59.103 50.000 0.00 0.00 43.57 5.54
1909 2354 1.729284 TTTAAAGCGTCCCTAAGGCG 58.271 50.000 0.00 0.00 43.57 5.52
1910 2355 3.253921 TGTTTTTAAAGCGTCCCTAAGGC 59.746 43.478 0.00 0.00 39.09 4.35
1911 2356 5.638596 ATGTTTTTAAAGCGTCCCTAAGG 57.361 39.130 0.00 0.00 0.00 2.69
1912 2357 6.373495 ACCTATGTTTTTAAAGCGTCCCTAAG 59.627 38.462 0.00 0.00 0.00 2.18
1913 2358 6.240145 ACCTATGTTTTTAAAGCGTCCCTAA 58.760 36.000 0.00 0.00 0.00 2.69
1914 2359 5.807909 ACCTATGTTTTTAAAGCGTCCCTA 58.192 37.500 0.00 0.00 0.00 3.53
1915 2360 4.659115 ACCTATGTTTTTAAAGCGTCCCT 58.341 39.130 0.00 0.00 0.00 4.20
1916 2361 6.094464 ACATACCTATGTTTTTAAAGCGTCCC 59.906 38.462 0.00 0.00 43.99 4.46
1917 2362 7.080353 ACATACCTATGTTTTTAAAGCGTCC 57.920 36.000 0.00 0.00 43.99 4.79
1918 2363 8.876790 ACTACATACCTATGTTTTTAAAGCGTC 58.123 33.333 3.31 0.00 43.99 5.19
1919 2364 8.782339 ACTACATACCTATGTTTTTAAAGCGT 57.218 30.769 3.31 0.00 43.99 5.07
1920 2365 9.485591 CAACTACATACCTATGTTTTTAAAGCG 57.514 33.333 3.31 0.00 43.99 4.68
1924 2369 9.709495 ACGACAACTACATACCTATGTTTTTAA 57.291 29.630 3.31 0.00 43.99 1.52
1925 2370 9.709495 AACGACAACTACATACCTATGTTTTTA 57.291 29.630 3.31 0.00 43.99 1.52
1926 2371 8.611654 AACGACAACTACATACCTATGTTTTT 57.388 30.769 3.31 0.00 43.99 1.94
1927 2372 8.092687 AGAACGACAACTACATACCTATGTTTT 58.907 33.333 3.31 0.00 43.99 2.43
1928 2373 7.609056 AGAACGACAACTACATACCTATGTTT 58.391 34.615 3.31 0.00 43.99 2.83
1929 2374 7.094075 TGAGAACGACAACTACATACCTATGTT 60.094 37.037 3.31 0.00 43.99 2.71
1931 2376 6.792326 TGAGAACGACAACTACATACCTATG 58.208 40.000 0.00 0.00 39.55 2.23
1932 2377 7.584122 ATGAGAACGACAACTACATACCTAT 57.416 36.000 0.00 0.00 0.00 2.57
1933 2378 7.400599 AATGAGAACGACAACTACATACCTA 57.599 36.000 0.00 0.00 0.00 3.08
1934 2379 5.916661 ATGAGAACGACAACTACATACCT 57.083 39.130 0.00 0.00 0.00 3.08
1935 2380 6.588756 TGAAATGAGAACGACAACTACATACC 59.411 38.462 0.00 0.00 0.00 2.73
1936 2381 7.576750 TGAAATGAGAACGACAACTACATAC 57.423 36.000 0.00 0.00 0.00 2.39
1937 2382 7.654116 TGTTGAAATGAGAACGACAACTACATA 59.346 33.333 0.00 0.00 38.51 2.29
1970 2415 4.088213 CGAGTTCTGCAAGTAAAGTACGTC 59.912 45.833 0.00 0.00 33.76 4.34
1980 2521 1.001406 CTCCTTCCGAGTTCTGCAAGT 59.999 52.381 0.00 0.00 33.51 3.16
2199 2740 7.133133 AGTGGGTAATGTATTTCTACCGAAT 57.867 36.000 0.00 0.00 36.69 3.34
2202 2743 5.163385 TGGAGTGGGTAATGTATTTCTACCG 60.163 44.000 0.00 0.00 36.69 4.02
2306 2847 7.887381 AGGATAATGTACTGTAGTGCTGTATC 58.113 38.462 1.55 7.86 34.72 2.24
2307 2848 7.841282 AGGATAATGTACTGTAGTGCTGTAT 57.159 36.000 1.55 0.30 34.72 2.29
2308 2849 7.655521 AAGGATAATGTACTGTAGTGCTGTA 57.344 36.000 0.00 0.00 0.00 2.74
2309 2850 6.546428 AAGGATAATGTACTGTAGTGCTGT 57.454 37.500 0.00 0.00 0.00 4.40
2310 2851 7.223582 CAGAAAGGATAATGTACTGTAGTGCTG 59.776 40.741 0.00 0.00 0.00 4.41
2311 2852 7.268586 CAGAAAGGATAATGTACTGTAGTGCT 58.731 38.462 0.00 0.00 0.00 4.40
2312 2853 6.018669 GCAGAAAGGATAATGTACTGTAGTGC 60.019 42.308 0.00 0.00 0.00 4.40
2544 3094 2.887151 AGCATGTTTTAGTCTGGGCT 57.113 45.000 0.00 0.00 0.00 5.19
2688 3296 3.776969 AGAAGGCATGTCTCCTTATGACA 59.223 43.478 0.00 0.00 43.54 3.58
2726 3334 7.732025 TCTTGTTAGGATCAAAACTGACACTA 58.268 34.615 9.88 0.00 33.67 2.74
2727 3335 6.591935 TCTTGTTAGGATCAAAACTGACACT 58.408 36.000 9.88 0.00 33.67 3.55
2742 3610 5.095490 GCGGTTCATTTGAATCTTGTTAGG 58.905 41.667 2.36 0.00 36.33 2.69
2779 3647 1.469703 CCAACAGCAGCAATCAATCGA 59.530 47.619 0.00 0.00 0.00 3.59
2791 3659 2.172505 TGAAAGAAGAGGACCAACAGCA 59.827 45.455 0.00 0.00 0.00 4.41
2792 3660 2.851195 TGAAAGAAGAGGACCAACAGC 58.149 47.619 0.00 0.00 0.00 4.40
2793 3661 6.396829 AAAATGAAAGAAGAGGACCAACAG 57.603 37.500 0.00 0.00 0.00 3.16
2838 3712 9.415544 GCAGGGAATATATTTGATCATTTCAAC 57.584 33.333 0.00 0.00 43.99 3.18
2874 3750 2.163818 TAGTTTGGTCTCGGCAACAG 57.836 50.000 0.00 0.00 0.00 3.16
2951 3830 3.833545 ACACGTGTTACAAGCACAAAA 57.166 38.095 17.22 0.00 36.71 2.44
2982 3861 9.631257 ATTCTGTTCATATCACCATATGTCAAA 57.369 29.630 1.24 0.00 41.92 2.69
3098 6984 0.251033 TTGCAGCCAGCTCTTGTCAT 60.251 50.000 0.19 0.00 45.94 3.06
3372 7291 6.239217 TGGCACTGTAATTGACATAGATCT 57.761 37.500 0.00 0.00 37.45 2.75
3481 7478 4.698201 TTGTGAACAGTAACCAGATGGA 57.302 40.909 5.72 0.00 38.94 3.41
3497 7495 2.289444 GGGGTCTTCGAACTGATTGTGA 60.289 50.000 0.00 0.00 0.00 3.58
3541 7553 8.771920 ACAATATTTCACAGAACTGACGAATA 57.228 30.769 8.87 9.01 0.00 1.75
3542 7554 7.672983 ACAATATTTCACAGAACTGACGAAT 57.327 32.000 8.87 7.41 0.00 3.34
3545 7557 8.443160 ACATAACAATATTTCACAGAACTGACG 58.557 33.333 8.87 0.00 0.00 4.35
3621 7633 2.563179 AGGTGACCAGACATCACTACAC 59.437 50.000 3.63 0.00 44.88 2.90
3637 7649 9.629649 AAATGGAGGGAGTAATATATAAGGTGA 57.370 33.333 0.00 0.00 0.00 4.02
3773 8541 3.754323 GTGCTAGTCACACAGTCTAGTCT 59.246 47.826 11.05 0.00 44.98 3.24
3824 8594 4.691326 AAAGATCGAATTCCCCCTCTAC 57.309 45.455 0.00 0.00 0.00 2.59
3895 8665 4.039852 TGCAAAGAAAGGTGGGGAAATAAC 59.960 41.667 0.00 0.00 0.00 1.89
3954 8725 7.339721 CAGTCCTACTCCTAATTCACTACTGAA 59.660 40.741 0.00 0.00 40.77 3.02
3959 8730 6.159928 TCTCCAGTCCTACTCCTAATTCACTA 59.840 42.308 0.00 0.00 0.00 2.74
3966 8737 4.669866 TGTTCTCCAGTCCTACTCCTAA 57.330 45.455 0.00 0.00 0.00 2.69
4004 8777 2.836262 CTGCTAGAGGGCTGAATTCTG 58.164 52.381 7.05 7.51 33.89 3.02
4161 8934 8.932434 TTATCAGGCCAACAGCATTAAATATA 57.068 30.769 5.01 0.00 46.50 0.86
4177 8950 4.579869 TCTTCAACTTGACTTATCAGGCC 58.420 43.478 0.00 0.00 35.34 5.19
4190 8963 3.574396 TCTCAGTCGGACATCTTCAACTT 59.426 43.478 11.27 0.00 0.00 2.66
4206 8979 3.914426 AGTCAACACTTGGTTCTCAGT 57.086 42.857 0.00 0.00 37.72 3.41
4233 9006 6.605995 TCCCAATGATTAAGAGACTCGACTAA 59.394 38.462 0.00 0.00 0.00 2.24
4273 9046 2.826428 CTGGATCCATTCCTGTACACG 58.174 52.381 16.63 0.00 45.68 4.49
4311 9084 2.032634 GCGCATTCGACCCTGTTCA 61.033 57.895 0.30 0.00 38.10 3.18
4320 9093 1.153449 CACCTAAGGGCGCATTCGA 60.153 57.895 10.83 0.00 37.46 3.71
4329 9102 1.765230 AGCGTCTAGACACCTAAGGG 58.235 55.000 22.37 4.87 38.88 3.95
4411 9184 5.944599 AGCAGTCATGATTCAGTCTCAATTT 59.055 36.000 0.00 0.00 0.00 1.82
4416 9189 2.608546 GCAGCAGTCATGATTCAGTCTC 59.391 50.000 0.00 0.00 0.00 3.36
4417 9190 2.236644 AGCAGCAGTCATGATTCAGTCT 59.763 45.455 0.00 0.00 0.00 3.24
4418 9191 2.608546 GAGCAGCAGTCATGATTCAGTC 59.391 50.000 0.00 0.00 0.00 3.51
4419 9192 2.027469 TGAGCAGCAGTCATGATTCAGT 60.027 45.455 0.00 0.00 0.00 3.41
4420 9193 2.629051 TGAGCAGCAGTCATGATTCAG 58.371 47.619 0.00 0.00 0.00 3.02
4563 9353 3.767673 TGCTTAGTACCTCCTTGTACCTG 59.232 47.826 0.00 0.00 41.63 4.00
4632 9422 4.505742 CCTTGAGCCTCCTCTTTTGTAAGT 60.506 45.833 0.00 0.00 38.93 2.24
4644 9434 1.267121 TGTCTGTACCTTGAGCCTCC 58.733 55.000 0.00 0.00 0.00 4.30
4676 9466 1.753073 CAAATGGGGGAATGAGTGAGC 59.247 52.381 0.00 0.00 0.00 4.26
4679 9469 4.284234 AGAAAACAAATGGGGGAATGAGTG 59.716 41.667 0.00 0.00 0.00 3.51
4692 9482 8.706322 AGTTGGTATGGTAAGAGAAAACAAAT 57.294 30.769 0.00 0.00 0.00 2.32
4702 9492 7.281774 CGAGTTAGAGTAGTTGGTATGGTAAGA 59.718 40.741 0.00 0.00 0.00 2.10
4786 9576 1.604378 CCACTTCCTGAAGGCGGAT 59.396 57.895 11.34 0.00 42.53 4.18
4822 9612 0.674895 GAATGGACGCCTTCTGCAGT 60.675 55.000 14.67 0.00 41.33 4.40
4905 9695 3.753434 ACTCCGACTCCGCTGCTG 61.753 66.667 0.00 0.00 0.00 4.41
4906 9696 3.753434 CACTCCGACTCCGCTGCT 61.753 66.667 0.00 0.00 0.00 4.24
4908 9698 4.803426 GGCACTCCGACTCCGCTG 62.803 72.222 0.00 0.00 0.00 5.18
4910 9700 4.803426 CAGGCACTCCGACTCCGC 62.803 72.222 0.00 0.00 34.60 5.54
4911 9701 4.135153 CCAGGCACTCCGACTCCG 62.135 72.222 0.00 0.00 34.60 4.63
4912 9702 3.775654 CCCAGGCACTCCGACTCC 61.776 72.222 0.00 0.00 34.60 3.85
4913 9703 4.459089 GCCCAGGCACTCCGACTC 62.459 72.222 3.12 0.00 41.49 3.36
4937 9727 0.744057 CAGTGTGCATACATCGGCCA 60.744 55.000 16.44 0.00 39.39 5.36
4966 9756 0.822121 GCATGGATGGCTGCTGATCA 60.822 55.000 0.00 0.00 35.49 2.92
4967 9757 0.822121 TGCATGGATGGCTGCTGATC 60.822 55.000 0.00 1.68 39.16 2.92
4968 9758 0.178961 ATGCATGGATGGCTGCTGAT 60.179 50.000 0.00 0.00 39.16 2.90
4969 9759 0.396556 AATGCATGGATGGCTGCTGA 60.397 50.000 0.00 0.00 39.16 4.26
4970 9760 0.464036 AAATGCATGGATGGCTGCTG 59.536 50.000 0.00 0.00 39.16 4.41
4971 9761 0.750850 GAAATGCATGGATGGCTGCT 59.249 50.000 0.00 0.00 39.16 4.24
4972 9762 0.462375 TGAAATGCATGGATGGCTGC 59.538 50.000 0.00 0.00 38.87 5.25
4976 9804 3.386726 ACCAGATTGAAATGCATGGATGG 59.613 43.478 0.00 4.96 0.00 3.51
4985 9813 2.821378 TCAGGTGCACCAGATTGAAATG 59.179 45.455 36.39 22.02 38.89 2.32
5021 9849 6.670077 AACAAGAGTTGAAGTCAGAGTTTC 57.330 37.500 2.50 0.00 36.39 2.78
5022 9850 7.454260 AAAACAAGAGTTGAAGTCAGAGTTT 57.546 32.000 2.50 7.11 38.17 2.66
5023 9851 7.454260 AAAAACAAGAGTTGAAGTCAGAGTT 57.546 32.000 2.50 1.54 38.17 3.01
5032 9860 7.771183 ACAAGCATCTAAAAACAAGAGTTGAA 58.229 30.769 0.00 0.00 38.17 2.69
5033 9861 7.283127 AGACAAGCATCTAAAAACAAGAGTTGA 59.717 33.333 0.00 0.00 38.17 3.18
5056 9884 2.488545 TCCTCGAGAGTTGCAGTAAGAC 59.511 50.000 15.71 0.00 0.00 3.01
5058 9886 2.159310 CCTCCTCGAGAGTTGCAGTAAG 60.159 54.545 15.71 0.00 41.47 2.34
5059 9887 1.819288 CCTCCTCGAGAGTTGCAGTAA 59.181 52.381 15.71 0.00 41.47 2.24
5060 9888 1.464734 CCTCCTCGAGAGTTGCAGTA 58.535 55.000 15.71 0.00 41.47 2.74
5070 9898 0.321122 ACAAGCAAAGCCTCCTCGAG 60.321 55.000 5.13 5.13 0.00 4.04
5080 9908 7.381948 TGCAATGATTTGTACTAACAAGCAAAG 59.618 33.333 13.87 0.00 45.99 2.77
5092 9920 7.953173 CACATGATGTTTTGCAATGATTTGTAC 59.047 33.333 0.00 0.00 35.17 2.90
5093 9921 7.360185 GCACATGATGTTTTGCAATGATTTGTA 60.360 33.333 0.00 0.00 35.17 2.41
5094 9922 6.566942 GCACATGATGTTTTGCAATGATTTGT 60.567 34.615 0.00 0.00 35.17 2.83
5096 9924 5.390040 CGCACATGATGTTTTGCAATGATTT 60.390 36.000 0.00 0.00 34.49 2.17
5102 9930 1.138337 GCGCACATGATGTTTTGCAA 58.862 45.000 0.30 0.00 34.49 4.08
5114 9942 1.520120 CGGAGACATGAGCGCACAT 60.520 57.895 14.92 14.92 0.00 3.21
5116 9944 1.687494 GAACGGAGACATGAGCGCAC 61.687 60.000 11.47 3.13 0.00 5.34
5117 9945 1.446099 GAACGGAGACATGAGCGCA 60.446 57.895 11.47 0.00 0.00 6.09
5118 9946 0.807667 ATGAACGGAGACATGAGCGC 60.808 55.000 0.00 0.00 0.00 5.92
5119 9947 0.926155 CATGAACGGAGACATGAGCG 59.074 55.000 0.00 0.00 43.46 5.03
5122 9950 0.530288 TCGCATGAACGGAGACATGA 59.470 50.000 0.00 0.00 43.46 3.07
5124 9952 0.460284 GGTCGCATGAACGGAGACAT 60.460 55.000 0.00 0.00 36.89 3.06
5125 9953 1.080093 GGTCGCATGAACGGAGACA 60.080 57.895 0.00 0.00 36.89 3.41
5126 9954 0.669318 TTGGTCGCATGAACGGAGAC 60.669 55.000 0.00 0.00 33.14 3.36
5128 9956 1.086696 ATTTGGTCGCATGAACGGAG 58.913 50.000 0.00 0.00 33.14 4.63
5130 9958 0.179166 CCATTTGGTCGCATGAACGG 60.179 55.000 0.00 0.00 33.14 4.44
5131 9959 0.801872 TCCATTTGGTCGCATGAACG 59.198 50.000 0.00 0.00 33.14 3.95
5132 9960 3.508744 ATTCCATTTGGTCGCATGAAC 57.491 42.857 0.00 0.00 36.34 3.18
5133 9961 4.439974 GCTAATTCCATTTGGTCGCATGAA 60.440 41.667 0.00 0.00 36.34 2.57
5134 9962 3.066621 GCTAATTCCATTTGGTCGCATGA 59.933 43.478 0.00 0.00 36.34 3.07
5135 9963 3.374745 GCTAATTCCATTTGGTCGCATG 58.625 45.455 0.00 0.00 36.34 4.06
5136 9964 2.362077 GGCTAATTCCATTTGGTCGCAT 59.638 45.455 0.00 0.00 36.34 4.73
5137 9965 1.748493 GGCTAATTCCATTTGGTCGCA 59.252 47.619 0.00 0.00 36.34 5.10
5138 9966 1.748493 TGGCTAATTCCATTTGGTCGC 59.252 47.619 0.00 0.00 36.34 5.19
5139 9967 4.157656 TCTTTGGCTAATTCCATTTGGTCG 59.842 41.667 0.00 0.00 35.77 4.79
5140 9968 5.654497 CTCTTTGGCTAATTCCATTTGGTC 58.346 41.667 0.00 0.00 35.77 4.02
5141 9969 4.081476 GCTCTTTGGCTAATTCCATTTGGT 60.081 41.667 0.00 0.00 35.77 3.67
5142 9970 4.081531 TGCTCTTTGGCTAATTCCATTTGG 60.082 41.667 0.00 0.00 35.77 3.28
5143 9971 5.075858 TGCTCTTTGGCTAATTCCATTTG 57.924 39.130 0.00 0.00 35.77 2.32
5144 9972 5.018809 TCTGCTCTTTGGCTAATTCCATTT 58.981 37.500 0.00 0.00 35.77 2.32
5145 9973 4.603131 TCTGCTCTTTGGCTAATTCCATT 58.397 39.130 0.00 0.00 35.77 3.16
5146 9974 4.240881 TCTGCTCTTTGGCTAATTCCAT 57.759 40.909 0.00 0.00 35.77 3.41
5147 9975 3.719268 TCTGCTCTTTGGCTAATTCCA 57.281 42.857 0.00 0.00 0.00 3.53
5148 9976 6.319911 AGTTATTCTGCTCTTTGGCTAATTCC 59.680 38.462 0.00 0.00 0.00 3.01
5149 9977 7.326968 AGTTATTCTGCTCTTTGGCTAATTC 57.673 36.000 0.00 0.00 0.00 2.17
5150 9978 7.177392 ACAAGTTATTCTGCTCTTTGGCTAATT 59.823 33.333 0.00 0.00 0.00 1.40
5151 9979 6.660949 ACAAGTTATTCTGCTCTTTGGCTAAT 59.339 34.615 0.00 0.00 0.00 1.73
5152 9980 6.003950 ACAAGTTATTCTGCTCTTTGGCTAA 58.996 36.000 0.00 0.00 0.00 3.09
5153 9981 5.412594 CACAAGTTATTCTGCTCTTTGGCTA 59.587 40.000 0.00 0.00 0.00 3.93
5154 9982 4.217118 CACAAGTTATTCTGCTCTTTGGCT 59.783 41.667 0.00 0.00 0.00 4.75
5155 9983 4.479619 CACAAGTTATTCTGCTCTTTGGC 58.520 43.478 0.00 0.00 0.00 4.52
5156 9984 4.616835 GCCACAAGTTATTCTGCTCTTTGG 60.617 45.833 0.00 0.00 0.00 3.28
5157 9985 4.022935 TGCCACAAGTTATTCTGCTCTTTG 60.023 41.667 0.00 0.00 0.00 2.77
5158 9986 4.144297 TGCCACAAGTTATTCTGCTCTTT 58.856 39.130 0.00 0.00 0.00 2.52
5159 9987 3.754965 TGCCACAAGTTATTCTGCTCTT 58.245 40.909 0.00 0.00 0.00 2.85
5160 9988 3.423539 TGCCACAAGTTATTCTGCTCT 57.576 42.857 0.00 0.00 0.00 4.09
5161 9989 3.944015 AGATGCCACAAGTTATTCTGCTC 59.056 43.478 0.00 0.00 0.00 4.26
5162 9990 3.944015 GAGATGCCACAAGTTATTCTGCT 59.056 43.478 0.00 0.00 0.00 4.24
5163 9991 3.944015 AGAGATGCCACAAGTTATTCTGC 59.056 43.478 0.00 0.00 0.00 4.26
5164 9992 5.877031 CAAGAGATGCCACAAGTTATTCTG 58.123 41.667 0.00 0.00 0.00 3.02
5179 10007 1.742761 ACCGGTCATTGCAAGAGATG 58.257 50.000 0.00 0.00 0.00 2.90
5187 10015 2.812011 AGAAGTAACAACCGGTCATTGC 59.188 45.455 8.04 9.25 0.00 3.56
5188 10016 4.152402 CAGAGAAGTAACAACCGGTCATTG 59.848 45.833 8.04 5.13 0.00 2.82
5192 10020 2.067013 GCAGAGAAGTAACAACCGGTC 58.933 52.381 8.04 0.00 0.00 4.79
5195 10023 3.026630 TCTGCAGAGAAGTAACAACCG 57.973 47.619 13.74 0.00 0.00 4.44
5202 10030 7.441836 TCACAAAGTTTATCTGCAGAGAAGTA 58.558 34.615 21.91 7.57 0.00 2.24
5203 10031 6.291377 TCACAAAGTTTATCTGCAGAGAAGT 58.709 36.000 21.91 17.62 0.00 3.01
5214 10042 6.970484 TGCTTTTCCTCTCACAAAGTTTATC 58.030 36.000 0.00 0.00 31.29 1.75
5216 10044 6.767524 TTGCTTTTCCTCTCACAAAGTTTA 57.232 33.333 0.00 0.00 31.29 2.01
5224 10052 4.045636 TGCTTTTTGCTTTTCCTCTCAC 57.954 40.909 0.00 0.00 43.37 3.51
5227 10055 4.160252 TGTTCTGCTTTTTGCTTTTCCTCT 59.840 37.500 0.00 0.00 43.37 3.69
5229 10057 4.470334 TGTTCTGCTTTTTGCTTTTCCT 57.530 36.364 0.00 0.00 43.37 3.36
5230 10058 4.631377 AGTTGTTCTGCTTTTTGCTTTTCC 59.369 37.500 0.00 0.00 43.37 3.13
5233 10061 6.372981 CAAAAGTTGTTCTGCTTTTTGCTTT 58.627 32.000 0.00 0.00 41.33 3.51
5240 10068 2.170397 CCCCCAAAAGTTGTTCTGCTTT 59.830 45.455 0.00 0.00 36.60 3.51
5243 10345 3.986970 CCCCCAAAAGTTGTTCTGC 57.013 52.632 0.00 0.00 0.00 4.26
5258 10360 8.208224 CCCTAAATTCATTTTACATTAACCCCC 58.792 37.037 0.00 0.00 0.00 5.40
5259 10361 8.208224 CCCCTAAATTCATTTTACATTAACCCC 58.792 37.037 0.00 0.00 0.00 4.95
5260 10362 8.208224 CCCCCTAAATTCATTTTACATTAACCC 58.792 37.037 0.00 0.00 0.00 4.11
5261 10363 7.713507 GCCCCCTAAATTCATTTTACATTAACC 59.286 37.037 0.00 0.00 0.00 2.85
5262 10364 8.261522 TGCCCCCTAAATTCATTTTACATTAAC 58.738 33.333 0.00 0.00 0.00 2.01
5263 10365 8.380742 TGCCCCCTAAATTCATTTTACATTAA 57.619 30.769 0.00 0.00 0.00 1.40
5264 10366 7.979786 TGCCCCCTAAATTCATTTTACATTA 57.020 32.000 0.00 0.00 0.00 1.90
5266 10368 6.688666 GCATGCCCCCTAAATTCATTTTACAT 60.689 38.462 6.36 0.00 0.00 2.29
5268 10370 5.056480 GCATGCCCCCTAAATTCATTTTAC 58.944 41.667 6.36 0.00 0.00 2.01
5269 10371 4.102367 GGCATGCCCCCTAAATTCATTTTA 59.898 41.667 27.24 0.00 0.00 1.52
5274 10376 0.636101 AGGCATGCCCCCTAAATTCA 59.364 50.000 33.14 0.00 36.58 2.57
5276 10378 0.636101 TCAGGCATGCCCCCTAAATT 59.364 50.000 33.14 9.27 36.58 1.82
5277 10379 0.636101 TTCAGGCATGCCCCCTAAAT 59.364 50.000 33.14 10.12 36.58 1.40
5279 10381 1.614711 CTTCAGGCATGCCCCCTAA 59.385 57.895 33.14 19.58 36.58 2.69
5281 10383 4.453892 GCTTCAGGCATGCCCCCT 62.454 66.667 33.14 12.66 41.35 4.79
5284 10386 3.697439 TACCGCTTCAGGCATGCCC 62.697 63.158 33.14 16.26 41.91 5.36
5285 10387 2.124736 TACCGCTTCAGGCATGCC 60.125 61.111 30.12 30.12 41.91 4.40
5286 10388 1.450312 AGTACCGCTTCAGGCATGC 60.450 57.895 9.90 9.90 41.91 4.06
5287 10389 0.391661 ACAGTACCGCTTCAGGCATG 60.392 55.000 0.00 0.00 41.91 4.06
5290 10392 1.933853 CAATACAGTACCGCTTCAGGC 59.066 52.381 0.00 0.00 37.64 4.85
5292 10394 2.616960 TGCAATACAGTACCGCTTCAG 58.383 47.619 5.00 0.00 0.00 3.02
5297 10399 1.737793 AGCTTTGCAATACAGTACCGC 59.262 47.619 0.00 0.00 0.00 5.68
5298 10400 3.435327 TGAAGCTTTGCAATACAGTACCG 59.565 43.478 0.00 0.00 0.00 4.02
5299 10401 5.567138 ATGAAGCTTTGCAATACAGTACC 57.433 39.130 0.00 0.00 0.00 3.34
5301 10403 6.980593 ACAAATGAAGCTTTGCAATACAGTA 58.019 32.000 0.00 0.00 39.26 2.74
5303 10405 6.774354 AACAAATGAAGCTTTGCAATACAG 57.226 33.333 0.00 0.00 39.26 2.74
5304 10406 8.654230 TTAAACAAATGAAGCTTTGCAATACA 57.346 26.923 0.00 0.00 39.26 2.29
5305 10407 9.928236 TTTTAAACAAATGAAGCTTTGCAATAC 57.072 25.926 0.00 0.00 39.26 1.89
5307 10409 8.891720 TCTTTTAAACAAATGAAGCTTTGCAAT 58.108 25.926 0.00 0.00 39.26 3.56
5308 10410 8.261492 TCTTTTAAACAAATGAAGCTTTGCAA 57.739 26.923 0.00 0.00 39.26 4.08
5328 10446 8.488668 CCAAATTTAATCTCCCATGGATCTTTT 58.511 33.333 15.22 2.81 0.00 2.27
5329 10447 7.845800 TCCAAATTTAATCTCCCATGGATCTTT 59.154 33.333 15.22 4.29 31.12 2.52
5330 10448 7.364627 TCCAAATTTAATCTCCCATGGATCTT 58.635 34.615 15.22 3.73 31.12 2.40
5331 10449 6.925934 TCCAAATTTAATCTCCCATGGATCT 58.074 36.000 15.22 0.00 31.12 2.75
5332 10450 7.452501 TCATCCAAATTTAATCTCCCATGGATC 59.547 37.037 15.22 0.00 42.84 3.36
5333 10451 7.307550 TCATCCAAATTTAATCTCCCATGGAT 58.692 34.615 15.22 0.00 44.92 3.41
5334 10452 6.681538 TCATCCAAATTTAATCTCCCATGGA 58.318 36.000 15.22 0.00 39.79 3.41
5335 10453 6.982160 TCATCCAAATTTAATCTCCCATGG 57.018 37.500 4.14 4.14 0.00 3.66
5349 10467 8.824783 TCCCAAAGACAATTTAATCATCCAAAT 58.175 29.630 0.00 0.00 0.00 2.32
5352 10470 6.380846 CCTCCCAAAGACAATTTAATCATCCA 59.619 38.462 0.00 0.00 0.00 3.41
5358 10476 9.100197 ACATTAACCTCCCAAAGACAATTTAAT 57.900 29.630 0.00 0.00 0.00 1.40
5361 10479 6.994421 ACATTAACCTCCCAAAGACAATTT 57.006 33.333 0.00 0.00 0.00 1.82
5391 10514 6.434340 TGGCAATTTTAACAACCCAAAGTTTT 59.566 30.769 0.00 0.00 36.18 2.43
5395 10518 5.588246 AGTTGGCAATTTTAACAACCCAAAG 59.412 36.000 1.92 0.00 43.02 2.77
5396 10519 5.355350 CAGTTGGCAATTTTAACAACCCAAA 59.645 36.000 1.92 0.00 43.02 3.28
5399 10522 3.812609 CCAGTTGGCAATTTTAACAACCC 59.187 43.478 1.92 0.00 43.02 4.11
5402 10525 5.238214 GCATTCCAGTTGGCAATTTTAACAA 59.762 36.000 1.92 0.00 34.44 2.83
5405 10528 4.965814 TGCATTCCAGTTGGCAATTTTAA 58.034 34.783 1.92 0.00 32.54 1.52
5433 10556 0.833287 AGTTGAGCACTGGACACACT 59.167 50.000 0.00 0.00 32.83 3.55
5437 10560 1.211703 TCCAAAGTTGAGCACTGGACA 59.788 47.619 0.00 0.00 35.12 4.02
5438 10561 1.604278 GTCCAAAGTTGAGCACTGGAC 59.396 52.381 6.44 6.44 39.95 4.02
5439 10562 1.476833 GGTCCAAAGTTGAGCACTGGA 60.477 52.381 0.00 0.00 35.12 3.86
5440 10563 0.954452 GGTCCAAAGTTGAGCACTGG 59.046 55.000 0.00 0.00 35.12 4.00
5441 10564 1.334869 GTGGTCCAAAGTTGAGCACTG 59.665 52.381 14.86 0.00 42.11 3.66
5445 10568 0.668535 GGTGTGGTCCAAAGTTGAGC 59.331 55.000 0.00 0.00 0.00 4.26
5489 10618 2.032550 CACAGGACAAAGTTGAGCACTG 59.967 50.000 0.00 0.00 35.12 3.66
5497 10626 2.292267 CACAGAGCACAGGACAAAGTT 58.708 47.619 0.00 0.00 0.00 2.66
5498 10627 1.959042 CACAGAGCACAGGACAAAGT 58.041 50.000 0.00 0.00 0.00 2.66
5499 10628 0.590195 GCACAGAGCACAGGACAAAG 59.410 55.000 0.00 0.00 44.79 2.77
5500 10629 1.159713 CGCACAGAGCACAGGACAAA 61.160 55.000 0.00 0.00 46.13 2.83
5501 10630 1.595109 CGCACAGAGCACAGGACAA 60.595 57.895 0.00 0.00 46.13 3.18
5503 10632 3.418068 GCGCACAGAGCACAGGAC 61.418 66.667 0.30 0.00 46.13 3.85
5504 10633 4.687215 GGCGCACAGAGCACAGGA 62.687 66.667 10.83 0.00 46.13 3.86
5506 10635 1.153489 ATAGGCGCACAGAGCACAG 60.153 57.895 10.83 0.00 46.13 3.66
5507 10636 1.448365 CATAGGCGCACAGAGCACA 60.448 57.895 10.83 0.00 46.13 4.57
5508 10637 1.448540 ACATAGGCGCACAGAGCAC 60.449 57.895 10.83 0.00 46.13 4.40
5509 10638 1.448365 CACATAGGCGCACAGAGCA 60.448 57.895 10.83 0.00 46.13 4.26
5512 10641 0.459899 CTACCACATAGGCGCACAGA 59.540 55.000 10.83 0.00 43.14 3.41
5513 10642 0.530650 CCTACCACATAGGCGCACAG 60.531 60.000 10.83 0.00 44.36 3.66
5514 10643 1.520192 CCTACCACATAGGCGCACA 59.480 57.895 10.83 0.00 44.36 4.57
5515 10644 4.438346 CCTACCACATAGGCGCAC 57.562 61.111 10.83 0.00 44.36 5.34
5521 10650 2.365617 CAGGTACCAGCCTACCACATAG 59.634 54.545 15.94 0.00 39.05 2.23
5522 10651 2.394632 CAGGTACCAGCCTACCACATA 58.605 52.381 15.94 0.00 39.05 2.29
5523 10652 1.204146 CAGGTACCAGCCTACCACAT 58.796 55.000 15.94 0.00 39.05 3.21
5524 10653 0.907704 CCAGGTACCAGCCTACCACA 60.908 60.000 15.94 0.00 39.05 4.17
5525 10654 0.908180 ACCAGGTACCAGCCTACCAC 60.908 60.000 15.94 0.00 39.05 4.16
5526 10655 0.711782 TACCAGGTACCAGCCTACCA 59.288 55.000 15.94 0.00 39.05 3.25
5527 10656 1.411041 CTACCAGGTACCAGCCTACC 58.589 60.000 15.94 0.00 37.04 3.18
5528 10657 0.751452 GCTACCAGGTACCAGCCTAC 59.249 60.000 15.94 0.00 37.04 3.18
5529 10658 3.218974 GCTACCAGGTACCAGCCTA 57.781 57.895 15.94 0.00 37.04 3.93
5530 10659 4.051932 GCTACCAGGTACCAGCCT 57.948 61.111 15.94 0.00 39.99 4.58
5531 10660 2.908796 GGCTACCAGGTACCAGCC 59.091 66.667 21.57 21.57 46.21 4.85
5532 10661 1.221021 GTGGCTACCAGGTACCAGC 59.779 63.158 15.94 13.94 32.34 4.85
5533 10662 1.905512 GGTGGCTACCAGGTACCAG 59.094 63.158 15.42 5.89 46.71 4.00
5534 10663 4.140354 GGTGGCTACCAGGTACCA 57.860 61.111 15.42 13.96 46.71 3.25
5542 10671 0.244721 AGTAAACGACGGTGGCTACC 59.755 55.000 9.66 9.66 43.89 3.18
5543 10672 1.622232 GAGTAAACGACGGTGGCTAC 58.378 55.000 0.00 0.00 0.00 3.58
5544 10673 0.168788 CGAGTAAACGACGGTGGCTA 59.831 55.000 0.00 0.00 35.09 3.93
5545 10674 1.080974 CGAGTAAACGACGGTGGCT 60.081 57.895 0.00 0.00 35.09 4.75
5546 10675 0.109781 TACGAGTAAACGACGGTGGC 60.110 55.000 0.00 0.00 37.03 5.01
5547 10676 2.159531 TGATACGAGTAAACGACGGTGG 60.160 50.000 0.00 0.00 37.03 4.61
5548 10677 3.121559 TGATACGAGTAAACGACGGTG 57.878 47.619 0.00 0.00 37.03 4.94
5549 10678 3.829886 TTGATACGAGTAAACGACGGT 57.170 42.857 0.00 0.00 37.03 4.83
5550 10679 4.794762 TGAATTGATACGAGTAAACGACGG 59.205 41.667 0.00 0.00 37.03 4.79
5572 10701 4.462834 TGGTCTGTAGGTCTGTAACTGATG 59.537 45.833 0.00 0.00 0.00 3.07
5586 10715 2.352814 GCACCTGTACTGTGGTCTGTAG 60.353 54.545 15.00 2.37 33.75 2.74
5588 10717 0.393077 GCACCTGTACTGTGGTCTGT 59.607 55.000 15.00 0.00 33.75 3.41
5589 10718 0.392706 TGCACCTGTACTGTGGTCTG 59.607 55.000 15.00 3.51 33.75 3.51
5590 10719 0.681733 CTGCACCTGTACTGTGGTCT 59.318 55.000 15.00 0.00 33.75 3.85
5591 10720 0.951040 GCTGCACCTGTACTGTGGTC 60.951 60.000 15.00 6.87 33.75 4.02
5592 10721 1.071471 GCTGCACCTGTACTGTGGT 59.929 57.895 15.00 8.54 36.96 4.16
5593 10722 1.672356 GGCTGCACCTGTACTGTGG 60.672 63.158 15.00 8.01 34.27 4.17
5594 10723 0.534877 TTGGCTGCACCTGTACTGTG 60.535 55.000 0.50 10.59 40.22 3.66
5647 10795 4.602995 TGGTTGTGCTGTTTATTTTCGTC 58.397 39.130 0.00 0.00 0.00 4.20
5665 10813 7.234355 AGATGTCAAGATTTCTTAACCTGGTT 58.766 34.615 17.44 17.44 34.28 3.67
5666 10814 6.784031 AGATGTCAAGATTTCTTAACCTGGT 58.216 36.000 0.00 0.00 34.28 4.00
5670 10818 9.965824 TTTTTGAGATGTCAAGATTTCTTAACC 57.034 29.630 5.34 0.00 43.66 2.85
5686 10834 8.357402 TGATCTGATATGGCAATTTTTGAGATG 58.643 33.333 0.00 0.00 0.00 2.90
5731 10879 3.554324 GCTTCTGGCGTATAATCGTCAAA 59.446 43.478 0.00 0.00 44.55 2.69
5733 10881 2.545113 GGCTTCTGGCGTATAATCGTCA 60.545 50.000 0.00 0.00 43.08 4.35
5736 10884 2.148916 TGGCTTCTGGCGTATAATCG 57.851 50.000 0.00 0.00 42.94 3.34
5741 10889 2.246719 GAAGATGGCTTCTGGCGTAT 57.753 50.000 3.39 0.00 45.62 3.06
5752 10900 6.172630 AGAAGAAGAAGAAGAAGAAGATGGC 58.827 40.000 0.00 0.00 0.00 4.40
5753 10901 8.310382 TGTAGAAGAAGAAGAAGAAGAAGATGG 58.690 37.037 0.00 0.00 0.00 3.51
5754 10902 9.357652 CTGTAGAAGAAGAAGAAGAAGAAGATG 57.642 37.037 0.00 0.00 0.00 2.90
5756 10904 8.573035 GTCTGTAGAAGAAGAAGAAGAAGAAGA 58.427 37.037 0.00 0.00 36.40 2.87
5758 10906 8.239038 TGTCTGTAGAAGAAGAAGAAGAAGAA 57.761 34.615 0.00 0.00 36.40 2.52
5759 10907 7.721842 TCTGTCTGTAGAAGAAGAAGAAGAAGA 59.278 37.037 0.00 0.00 36.40 2.87
5760 10908 7.881142 TCTGTCTGTAGAAGAAGAAGAAGAAG 58.119 38.462 0.00 0.00 36.40 2.85
5761 10909 7.825331 TCTGTCTGTAGAAGAAGAAGAAGAA 57.175 36.000 0.00 0.00 36.40 2.52
5810 10958 5.870706 AGGCTCTAGTTATTATGGGCTTTC 58.129 41.667 0.00 0.00 0.00 2.62
5813 10964 6.730977 TGATTAGGCTCTAGTTATTATGGGCT 59.269 38.462 0.00 0.00 0.00 5.19
5846 10997 5.013704 TGTTGCTGTTTAGGATCTTAGGGAA 59.986 40.000 0.00 0.00 0.00 3.97
5862 11017 0.761187 TTCTGAGCTCCTGTTGCTGT 59.239 50.000 12.15 0.00 41.30 4.40
5865 11020 0.957888 GGGTTCTGAGCTCCTGTTGC 60.958 60.000 12.15 0.00 0.00 4.17
5874 11029 3.550656 CGTCGTTGGGTTCTGAGC 58.449 61.111 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.