Multiple sequence alignment - TraesCS1B01G362200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G362200 chr1B 100.000 9690 0 0 1 9690 591118713 591109024 0.000000e+00 17895.0
1 TraesCS1B01G362200 chr1D 92.742 5856 206 92 46 5778 436198415 436192656 0.000000e+00 8257.0
2 TraesCS1B01G362200 chr1D 93.479 3895 129 38 5838 9690 436192527 436188716 0.000000e+00 5670.0
3 TraesCS1B01G362200 chr1D 96.296 54 2 0 9 62 436198508 436198455 1.340000e-13 89.8
4 TraesCS1B01G362200 chr1D 88.679 53 6 0 7394 7446 387426651 387426703 2.260000e-06 65.8
5 TraesCS1B01G362200 chr1A 93.695 3870 144 35 5838 9690 533450782 533446996 0.000000e+00 5703.0
6 TraesCS1B01G362200 chr1A 88.260 2615 127 76 501 3050 533456315 533453816 0.000000e+00 2963.0
7 TraesCS1B01G362200 chr1A 93.792 1772 73 15 4011 5775 533452655 533450914 0.000000e+00 2628.0
8 TraesCS1B01G362200 chr1A 91.248 777 33 14 3022 3770 533453778 533453009 0.000000e+00 1026.0
9 TraesCS1B01G362200 chr1A 94.231 312 15 2 3775 4084 533452961 533452651 3.170000e-129 473.0
10 TraesCS1B01G362200 chr1A 88.679 53 6 0 7394 7446 487092092 487092144 2.260000e-06 65.8
11 TraesCS1B01G362200 chr5B 85.472 413 24 8 1131 1543 383037789 383038165 1.960000e-106 398.0
12 TraesCS1B01G362200 chr5B 97.674 43 0 1 5800 5841 571616771 571616729 1.350000e-08 73.1
13 TraesCS1B01G362200 chr5B 95.556 45 1 1 5802 5845 149328670 149328626 4.860000e-08 71.3
14 TraesCS1B01G362200 chr3A 79.009 424 74 13 7070 7482 509421516 509421097 9.590000e-70 276.0
15 TraesCS1B01G362200 chr3A 82.379 227 38 2 7688 7914 509420957 509420733 7.680000e-46 196.0
16 TraesCS1B01G362200 chr3A 90.566 53 5 0 7406 7458 601557475 601557423 4.860000e-08 71.3
17 TraesCS1B01G362200 chr3D 87.931 174 15 1 1231 1404 8991983 8991816 5.940000e-47 200.0
18 TraesCS1B01G362200 chr3D 81.938 227 39 2 7688 7914 388332532 388332308 3.570000e-44 191.0
19 TraesCS1B01G362200 chr3B 81.498 227 40 2 7688 7914 504981488 504981264 1.660000e-42 185.0
20 TraesCS1B01G362200 chr3B 84.810 79 6 5 5764 5841 404829395 404829468 3.750000e-09 75.0
21 TraesCS1B01G362200 chr3B 88.679 53 6 0 7406 7458 607383460 607383512 2.260000e-06 65.8
22 TraesCS1B01G362200 chr7D 87.719 114 8 1 1231 1344 111032386 111032279 2.840000e-25 128.0
23 TraesCS1B01G362200 chr7D 88.571 70 7 1 5772 5840 617070524 617070455 6.240000e-12 84.2
24 TraesCS1B01G362200 chr7D 94.000 50 2 1 5793 5841 252548075 252548124 3.750000e-09 75.0
25 TraesCS1B01G362200 chr6A 88.889 72 5 3 5776 5844 63587111 63587040 1.730000e-12 86.1
26 TraesCS1B01G362200 chr5D 93.878 49 2 1 5794 5841 464690676 464690724 1.350000e-08 73.1
27 TraesCS1B01G362200 chr7B 93.617 47 2 1 5794 5839 7200978 7201024 1.750000e-07 69.4
28 TraesCS1B01G362200 chr2B 97.561 41 0 1 5801 5840 645479734 645479694 1.750000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G362200 chr1B 591109024 591118713 9689 True 17895.000000 17895 100.000000 1 9690 1 chr1B.!!$R1 9689
1 TraesCS1B01G362200 chr1D 436188716 436198508 9792 True 4672.266667 8257 94.172333 9 9690 3 chr1D.!!$R1 9681
2 TraesCS1B01G362200 chr1A 533446996 533456315 9319 True 2558.600000 5703 92.245200 501 9690 5 chr1A.!!$R1 9189
3 TraesCS1B01G362200 chr3A 509420733 509421516 783 True 236.000000 276 80.694000 7070 7914 2 chr3A.!!$R2 844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 649 0.328258 AAACCTCAGCCATTACCGCT 59.672 50.000 0.00 0.00 36.91 5.52 F
2044 2206 0.590732 CAAATCATTCTGCGCGCTCC 60.591 55.000 33.29 3.49 0.00 4.70 F
2897 3106 1.227350 CGCGCTGATCATGGAGGAA 60.227 57.895 5.56 0.00 0.00 3.36 F
3138 3429 0.032017 TCTACTTCTGCCCTCCTCCC 60.032 60.000 0.00 0.00 0.00 4.30 F
4318 4739 0.250727 ATGTGCACCGTTAACCTGCT 60.251 50.000 15.69 2.31 0.00 4.24 F
4642 5066 1.064758 TGTGCCAGTGTTTCTTGAGGT 60.065 47.619 0.00 0.00 0.00 3.85 F
5380 5806 0.680921 ATGGTCCTTCGCATGGTTGG 60.681 55.000 0.00 0.00 0.00 3.77 F
5417 5843 0.986527 TCTGACATCACATGTGCCCT 59.013 50.000 21.38 4.85 45.03 5.19 F
6437 6934 0.815734 GTCGTAGCCTGGTGAAGCTA 59.184 55.000 0.00 0.00 40.56 3.32 F
7102 7600 2.561733 TCTCGATAACTTCAGCACCG 57.438 50.000 0.00 0.00 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2540 2732 0.387929 GACTTCCATCGCCATCCGTA 59.612 55.0 0.00 0.00 38.35 4.02 R
2906 3115 0.107703 CAATGTAGCCGAGGCCTTCA 60.108 55.0 6.77 8.07 43.17 3.02 R
4353 4774 0.036164 TGACCCAATCAACAGTCGGG 59.964 55.0 0.00 0.00 43.02 5.14 R
4864 5288 0.391263 GTACCCAGAGGCGTTTCCAG 60.391 60.0 0.00 0.00 37.29 3.86 R
5180 5604 0.392998 ATTGGACAGTCGGACATGGC 60.393 55.0 11.27 7.79 0.00 4.40 R
6127 6624 0.609957 CCTTGCTTGTCTGGATGCCA 60.610 55.0 0.00 0.00 0.00 4.92 R
6437 6934 0.681175 GCTTGTCAAATGGCTTGGGT 59.319 50.0 0.00 0.00 35.56 4.51 R
6639 7136 2.222678 GCAAGATACATCCATGTCTGCG 59.777 50.0 0.00 0.00 41.97 5.18 R
7937 8498 1.657822 TTGCGAGCAAACACAGTGTA 58.342 45.0 6.63 0.00 32.44 2.90 R
8820 9388 0.108377 TGCAGTGTCCATCGCGTAAT 60.108 50.0 5.77 0.00 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 151 0.527565 CAGGAATGTTTTGGCGGAGG 59.472 55.000 0.00 0.00 0.00 4.30
114 171 1.066716 GCAAGCAAAGCCAATGATCCA 60.067 47.619 0.00 0.00 0.00 3.41
178 235 4.115199 AGCTCGCCCCCATGTTCC 62.115 66.667 0.00 0.00 0.00 3.62
196 253 2.195139 GCCTCATCATGGCCTGCT 59.805 61.111 3.32 0.00 44.32 4.24
201 258 0.757512 TCATCATGGCCTGCTCTCTC 59.242 55.000 3.32 0.00 0.00 3.20
204 261 1.047596 TCATGGCCTGCTCTCTCTCC 61.048 60.000 3.32 0.00 0.00 3.71
207 264 1.231641 GGCCTGCTCTCTCTCCCTA 59.768 63.158 0.00 0.00 0.00 3.53
209 266 1.256812 GCCTGCTCTCTCTCCCTATC 58.743 60.000 0.00 0.00 0.00 2.08
211 268 2.041081 GCCTGCTCTCTCTCCCTATCTA 59.959 54.545 0.00 0.00 0.00 1.98
286 350 4.473520 CGCTTCCCGCCCACTCAT 62.474 66.667 0.00 0.00 34.21 2.90
287 351 2.908015 GCTTCCCGCCCACTCATA 59.092 61.111 0.00 0.00 0.00 2.15
290 354 0.541863 CTTCCCGCCCACTCATACTT 59.458 55.000 0.00 0.00 0.00 2.24
299 363 1.066858 CCACTCATACTTGCTGACCGT 60.067 52.381 0.00 0.00 0.00 4.83
301 365 1.135373 ACTCATACTTGCTGACCGTCG 60.135 52.381 0.00 0.00 0.00 5.12
302 366 0.457853 TCATACTTGCTGACCGTCGC 60.458 55.000 7.99 7.99 0.00 5.19
303 367 0.458543 CATACTTGCTGACCGTCGCT 60.459 55.000 13.80 1.01 0.00 4.93
305 369 2.523184 TACTTGCTGACCGTCGCTCG 62.523 60.000 13.80 8.74 39.52 5.03
308 372 4.175489 GCTGACCGTCGCTCGCTA 62.175 66.667 7.75 0.00 38.35 4.26
309 373 2.277373 CTGACCGTCGCTCGCTAC 60.277 66.667 0.00 0.00 38.35 3.58
310 374 2.745100 TGACCGTCGCTCGCTACT 60.745 61.111 0.00 0.00 38.35 2.57
314 378 2.174969 CCGTCGCTCGCTACTCTCT 61.175 63.158 0.00 0.00 38.35 3.10
316 380 1.644913 GTCGCTCGCTACTCTCTCC 59.355 63.158 0.00 0.00 0.00 3.71
536 615 3.008049 CCACCTTGACCAGCTTTACTACT 59.992 47.826 0.00 0.00 0.00 2.57
561 640 2.033424 GTGTGAAAGTGAAACCTCAGCC 59.967 50.000 0.00 0.00 37.80 4.85
562 641 2.297701 GTGAAAGTGAAACCTCAGCCA 58.702 47.619 0.00 0.00 37.80 4.75
563 642 2.887152 GTGAAAGTGAAACCTCAGCCAT 59.113 45.455 0.00 0.00 37.80 4.40
567 646 3.073274 AGTGAAACCTCAGCCATTACC 57.927 47.619 0.00 0.00 37.80 2.85
568 647 1.737793 GTGAAACCTCAGCCATTACCG 59.262 52.381 0.00 0.00 30.14 4.02
570 649 0.328258 AAACCTCAGCCATTACCGCT 59.672 50.000 0.00 0.00 36.91 5.52
575 654 4.473520 AGCCATTACCGCTGCGCT 62.474 61.111 18.00 5.67 34.56 5.92
576 655 4.241999 GCCATTACCGCTGCGCTG 62.242 66.667 18.00 10.04 0.00 5.18
703 820 4.997905 TTCATGTCTGCTCTTTTTCTCG 57.002 40.909 0.00 0.00 0.00 4.04
704 821 2.738846 TCATGTCTGCTCTTTTTCTCGC 59.261 45.455 0.00 0.00 0.00 5.03
705 822 1.512926 TGTCTGCTCTTTTTCTCGCC 58.487 50.000 0.00 0.00 0.00 5.54
706 823 1.202639 TGTCTGCTCTTTTTCTCGCCA 60.203 47.619 0.00 0.00 0.00 5.69
707 824 2.079925 GTCTGCTCTTTTTCTCGCCAT 58.920 47.619 0.00 0.00 0.00 4.40
708 825 2.095053 GTCTGCTCTTTTTCTCGCCATC 59.905 50.000 0.00 0.00 0.00 3.51
810 943 2.801421 CTAAGCGAGCGAGCCAGA 59.199 61.111 2.87 0.00 38.01 3.86
822 955 2.478200 GCGAGCCAGACAGTAAGTACTC 60.478 54.545 0.00 0.00 33.46 2.59
848 981 4.338327 CGTAGCATTAGGTCGCCC 57.662 61.111 0.00 0.00 0.00 6.13
867 1000 1.831389 CTCGTTGGACTGTTGCGTGG 61.831 60.000 0.00 0.00 0.00 4.94
1769 1931 3.968265 TCAAATCTCCTCCCAACAATCC 58.032 45.455 0.00 0.00 0.00 3.01
1781 1943 1.270550 CAACAATCCTCAAGCCGCTTT 59.729 47.619 1.86 0.00 0.00 3.51
1796 1958 2.607750 TTTGCTCGCTCCCCCTCT 60.608 61.111 0.00 0.00 0.00 3.69
2044 2206 0.590732 CAAATCATTCTGCGCGCTCC 60.591 55.000 33.29 3.49 0.00 4.70
2159 2327 6.631314 CGGAGGTGAAAGAGGTACTACTACTA 60.631 46.154 0.00 0.00 41.55 1.82
2160 2328 6.542005 GGAGGTGAAAGAGGTACTACTACTAC 59.458 46.154 0.00 0.00 41.55 2.73
2161 2329 7.269522 AGGTGAAAGAGGTACTACTACTACT 57.730 40.000 0.00 0.00 41.55 2.57
2162 2330 7.111466 AGGTGAAAGAGGTACTACTACTACTG 58.889 42.308 0.00 0.00 41.55 2.74
2163 2331 6.183360 GGTGAAAGAGGTACTACTACTACTGC 60.183 46.154 0.00 0.00 41.55 4.40
2164 2332 6.598850 GTGAAAGAGGTACTACTACTACTGCT 59.401 42.308 0.00 0.00 41.55 4.24
2165 2333 6.822676 TGAAAGAGGTACTACTACTACTGCTC 59.177 42.308 0.00 0.00 41.55 4.26
2188 2356 3.250744 TGCTGCTGTTCTTCATACGTAC 58.749 45.455 0.00 0.00 0.00 3.67
2189 2357 3.056821 TGCTGCTGTTCTTCATACGTACT 60.057 43.478 0.00 0.00 0.00 2.73
2190 2358 3.548268 GCTGCTGTTCTTCATACGTACTC 59.452 47.826 0.00 0.00 0.00 2.59
2191 2359 4.106029 TGCTGTTCTTCATACGTACTCC 57.894 45.455 0.00 0.00 0.00 3.85
2218 2386 2.177451 TCCTTTCCTTTTTACCCCGGTT 59.823 45.455 0.00 0.00 0.00 4.44
2271 2439 8.793592 AGTACAAATTCTTCCATTTTGGTAGTC 58.206 33.333 0.00 0.00 39.03 2.59
2400 2571 3.287222 CCGTATGTGTGGATTGGGAAAT 58.713 45.455 0.00 0.00 0.00 2.17
2418 2589 5.763204 GGGAAATATTGCCGACTAATCAAGA 59.237 40.000 6.37 0.00 0.00 3.02
2444 2625 2.125512 CGAGACTGGCGGGGAAAG 60.126 66.667 0.00 0.00 0.00 2.62
2462 2649 4.193893 CATCATCCCTGGCCGGCA 62.194 66.667 30.85 13.75 0.00 5.69
2540 2732 7.326454 GGAGGAAGAGGTTACGTAAATTTACT 58.674 38.462 22.57 13.68 0.00 2.24
2570 2762 2.095212 CGATGGAAGTCAGTCGTGAAGA 60.095 50.000 0.00 0.00 33.27 2.87
2626 2819 4.021925 GTTCCCGTCAGGCTGGCT 62.022 66.667 18.17 0.00 35.76 4.75
2652 2845 6.042781 AGCTATTATAATCCGTTCAACAGGGA 59.957 38.462 0.00 0.00 43.79 4.20
2742 2936 1.940613 GCCTAGCCAGGTTGTTTATCG 59.059 52.381 0.00 0.00 44.68 2.92
2788 2996 6.566197 GGATGGTTCCTGATGATGATTAAC 57.434 41.667 0.00 0.00 39.14 2.01
2800 3008 5.398603 TGATGATTAACGGTGGCAATTTT 57.601 34.783 0.00 0.00 0.00 1.82
2801 3009 5.167121 TGATGATTAACGGTGGCAATTTTG 58.833 37.500 0.00 0.00 0.00 2.44
2837 3046 2.511600 ATGCTAAGTGCGTCCGCC 60.512 61.111 9.43 0.74 46.63 6.13
2897 3106 1.227350 CGCGCTGATCATGGAGGAA 60.227 57.895 5.56 0.00 0.00 3.36
2906 3115 3.051803 TGATCATGGAGGAACTAGACCCT 60.052 47.826 0.00 1.59 41.55 4.34
2938 3147 6.046593 TCGGCTACATTGAGGTATAAAACTG 58.953 40.000 0.00 0.00 0.00 3.16
2981 3190 4.678309 CGTCACTATCCTCTGGTTTCCTTC 60.678 50.000 0.00 0.00 0.00 3.46
2988 3197 7.730332 ACTATCCTCTGGTTTCCTTCAAATTTT 59.270 33.333 0.00 0.00 0.00 1.82
2989 3198 6.160576 TCCTCTGGTTTCCTTCAAATTTTG 57.839 37.500 2.59 2.59 0.00 2.44
2990 3199 5.070313 TCCTCTGGTTTCCTTCAAATTTTGG 59.930 40.000 9.18 0.00 0.00 3.28
2993 3202 4.775236 TGGTTTCCTTCAAATTTTGGTGG 58.225 39.130 9.18 10.95 0.00 4.61
2997 3206 4.681074 TCCTTCAAATTTTGGTGGTTCC 57.319 40.909 9.18 0.00 0.00 3.62
3079 3367 2.821378 TGTCAGTCAAATCCCATTGCTG 59.179 45.455 0.00 0.00 36.57 4.41
3138 3429 0.032017 TCTACTTCTGCCCTCCTCCC 60.032 60.000 0.00 0.00 0.00 4.30
3191 3483 7.367285 TGAACCAATAACATCTTACTTGTTGC 58.633 34.615 0.00 0.00 37.81 4.17
3260 3552 1.305201 TTGCTGTCGGTTCACTTTCC 58.695 50.000 0.00 0.00 0.00 3.13
3502 3795 4.044336 TGCTGAAAATTGACACAACCAG 57.956 40.909 0.00 0.00 0.00 4.00
3543 3837 2.158505 CCCTGATCATGCTTCCCTTGAT 60.159 50.000 0.00 0.00 40.04 2.57
3550 3844 1.067295 TGCTTCCCTTGATGACCACT 58.933 50.000 0.00 0.00 0.00 4.00
3604 3898 7.390027 AGCAGAATATCAAGTGTAGTTCAGTT 58.610 34.615 0.00 0.00 39.96 3.16
3646 3940 4.651994 CCGTCTTCAAATGAGATTTTCCG 58.348 43.478 0.00 0.00 0.00 4.30
3826 4174 2.022934 TGTTGCATTTGTGAGACAGCA 58.977 42.857 0.00 0.00 0.00 4.41
3829 4177 1.002576 TGCATTTGTGAGACAGCAACG 60.003 47.619 0.00 0.00 0.00 4.10
4031 4379 4.641396 TCTGTGCTATACCCAATATGCAC 58.359 43.478 8.69 8.69 42.51 4.57
4046 4394 6.204359 CAATATGCACTGCTTTAGTTCCATC 58.796 40.000 1.98 0.00 37.60 3.51
4318 4739 0.250727 ATGTGCACCGTTAACCTGCT 60.251 50.000 15.69 2.31 0.00 4.24
4378 4802 2.945008 ACTGTTGATTGGGTCATATGCG 59.055 45.455 0.00 0.00 36.54 4.73
4383 4807 4.157849 TGATTGGGTCATATGCGGTTTA 57.842 40.909 0.00 0.00 0.00 2.01
4438 4862 4.161001 ACTCCACTACGGTTAATTACCTGG 59.839 45.833 0.00 0.00 45.40 4.45
4544 4968 7.707893 ACATCATTTGGCTATCACTTTAAATGC 59.292 33.333 0.00 0.00 36.18 3.56
4642 5066 1.064758 TGTGCCAGTGTTTCTTGAGGT 60.065 47.619 0.00 0.00 0.00 3.85
4678 5102 4.985538 TGTTGGGACACGTTAAAAACAT 57.014 36.364 0.00 0.00 39.29 2.71
4744 5168 5.696724 GCTATTGCAGAAGGATACATACGTT 59.303 40.000 0.00 0.00 39.41 3.99
4771 5195 1.448540 CCAGGCCTTGAGCTACACG 60.449 63.158 0.00 0.00 43.05 4.49
4864 5288 8.910351 AATTAAGCTATTATCTGGAGGACAAC 57.090 34.615 0.00 0.00 0.00 3.32
5029 5453 2.211250 AGCTGAACATGGCACTCATT 57.789 45.000 0.00 0.00 32.92 2.57
5038 5462 1.204146 TGGCACTCATTCTCCTACCC 58.796 55.000 0.00 0.00 0.00 3.69
5139 5563 5.605488 TCCATAAGGTTAGACATTAGACCCC 59.395 44.000 0.00 0.00 35.89 4.95
5180 5604 8.060020 TGTTTGTTGATTTCTGCGAAATTAAG 57.940 30.769 15.86 0.00 0.00 1.85
5189 5613 1.400142 TGCGAAATTAAGCCATGTCCG 59.600 47.619 3.10 0.00 0.00 4.79
5236 5660 3.713902 CTGTGTTCTGAACAGGCCT 57.286 52.632 22.61 0.00 43.10 5.19
5311 5736 9.344772 CATTATCTGTACCTAGTTCTGTAGACT 57.655 37.037 0.00 0.00 0.00 3.24
5318 5743 3.119316 CCTAGTTCTGTAGACTGCAGTGG 60.119 52.174 27.27 10.67 35.60 4.00
5324 5749 2.998670 CTGTAGACTGCAGTGGTTGATG 59.001 50.000 27.27 4.33 0.00 3.07
5380 5806 0.680921 ATGGTCCTTCGCATGGTTGG 60.681 55.000 0.00 0.00 0.00 3.77
5417 5843 0.986527 TCTGACATCACATGTGCCCT 59.013 50.000 21.38 4.85 45.03 5.19
5434 5860 1.916181 CCCTACACCATGAAAGGGACT 59.084 52.381 13.45 0.00 43.46 3.85
5505 5931 5.480642 TCTGTCTGAAAGCTTTCTCTGAT 57.519 39.130 33.03 2.29 38.02 2.90
5511 5937 3.072915 TGAAAGCTTTCTCTGATGTCCCA 59.927 43.478 33.03 11.80 38.02 4.37
5581 6007 7.880160 ATCATATTTTGCCTAGTTGCTGTTA 57.120 32.000 0.00 0.00 0.00 2.41
5582 6008 7.695480 TCATATTTTGCCTAGTTGCTGTTAA 57.305 32.000 0.00 0.00 0.00 2.01
5583 6009 8.292444 TCATATTTTGCCTAGTTGCTGTTAAT 57.708 30.769 0.00 0.00 0.00 1.40
5584 6010 8.748412 TCATATTTTGCCTAGTTGCTGTTAATT 58.252 29.630 0.00 0.00 0.00 1.40
5585 6011 9.369904 CATATTTTGCCTAGTTGCTGTTAATTT 57.630 29.630 0.00 0.00 0.00 1.82
5588 6014 9.942850 ATTTTGCCTAGTTGCTGTTAATTTAAT 57.057 25.926 0.00 0.00 0.00 1.40
5589 6015 8.980143 TTTGCCTAGTTGCTGTTAATTTAATC 57.020 30.769 0.00 0.00 0.00 1.75
5590 6016 7.695480 TGCCTAGTTGCTGTTAATTTAATCA 57.305 32.000 0.00 0.00 0.00 2.57
5591 6017 8.292444 TGCCTAGTTGCTGTTAATTTAATCAT 57.708 30.769 0.00 0.00 0.00 2.45
5592 6018 8.190122 TGCCTAGTTGCTGTTAATTTAATCATG 58.810 33.333 0.00 0.00 0.00 3.07
5593 6019 8.190784 GCCTAGTTGCTGTTAATTTAATCATGT 58.809 33.333 0.00 0.00 0.00 3.21
5594 6020 9.722056 CCTAGTTGCTGTTAATTTAATCATGTC 57.278 33.333 0.00 0.00 0.00 3.06
5634 6060 6.806739 GGTGCCTGTTATCTTATGTTTTGTTC 59.193 38.462 0.00 0.00 0.00 3.18
5637 6064 8.946085 TGCCTGTTATCTTATGTTTTGTTCTAG 58.054 33.333 0.00 0.00 0.00 2.43
5667 6094 5.049405 GCTATGGGATAGTCATTGTTTTCCG 60.049 44.000 0.00 0.00 35.29 4.30
5715 6142 3.036819 AGTCATGCAAGCTCAGATCCTA 58.963 45.455 0.00 0.00 0.00 2.94
5730 6157 6.367983 TCAGATCCTAAAGGCATGCTTTTAT 58.632 36.000 28.61 18.77 34.44 1.40
5731 6158 7.517320 TCAGATCCTAAAGGCATGCTTTTATA 58.483 34.615 28.61 21.46 34.44 0.98
5742 6169 8.469309 AGGCATGCTTTTATATATGAGTGTTT 57.531 30.769 18.92 0.00 0.00 2.83
5772 6199 5.250774 ACAACCTTTGGTCACATATACTCCT 59.749 40.000 0.00 0.00 33.12 3.69
5775 6202 5.726793 ACCTTTGGTCACATATACTCCTTCT 59.273 40.000 0.00 0.00 0.00 2.85
5778 6205 7.147724 CCTTTGGTCACATATACTCCTTCTGTA 60.148 40.741 0.00 0.00 0.00 2.74
5779 6206 7.727578 TTGGTCACATATACTCCTTCTGTAA 57.272 36.000 0.00 0.00 0.00 2.41
5780 6207 7.727578 TGGTCACATATACTCCTTCTGTAAA 57.272 36.000 0.00 0.00 0.00 2.01
5782 6209 8.038944 TGGTCACATATACTCCTTCTGTAAAAC 58.961 37.037 0.00 0.00 0.00 2.43
5783 6210 7.222224 GGTCACATATACTCCTTCTGTAAAACG 59.778 40.741 0.00 0.00 0.00 3.60
5784 6211 7.758528 GTCACATATACTCCTTCTGTAAAACGT 59.241 37.037 0.00 0.00 0.00 3.99
5786 6213 8.932791 CACATATACTCCTTCTGTAAAACGTTT 58.067 33.333 7.96 7.96 0.00 3.60
5787 6214 9.498176 ACATATACTCCTTCTGTAAAACGTTTT 57.502 29.630 27.65 27.65 0.00 2.43
5793 6220 6.347696 TCCTTCTGTAAAACGTTTTAGGTCA 58.652 36.000 28.88 22.17 33.66 4.02
5794 6221 6.258507 TCCTTCTGTAAAACGTTTTAGGTCAC 59.741 38.462 28.88 21.02 33.66 3.67
5795 6222 6.259387 CCTTCTGTAAAACGTTTTAGGTCACT 59.741 38.462 28.88 8.12 33.66 3.41
5796 6223 7.439056 CCTTCTGTAAAACGTTTTAGGTCACTA 59.561 37.037 28.88 8.86 33.66 2.74
5797 6224 7.698836 TCTGTAAAACGTTTTAGGTCACTAC 57.301 36.000 28.88 19.16 33.66 2.73
5815 6242 5.635417 ACTACCTTAGTGACCTAAACGTC 57.365 43.478 0.00 0.00 37.69 4.34
5816 6243 5.320277 ACTACCTTAGTGACCTAAACGTCT 58.680 41.667 0.00 0.00 37.69 4.18
5817 6244 5.772169 ACTACCTTAGTGACCTAAACGTCTT 59.228 40.000 0.00 0.00 37.69 3.01
5821 6248 8.353423 ACCTTAGTGACCTAAACGTCTTATAA 57.647 34.615 0.00 0.00 32.86 0.98
5822 6249 8.806146 ACCTTAGTGACCTAAACGTCTTATAAA 58.194 33.333 0.00 0.00 32.86 1.40
5827 6254 9.551734 AGTGACCTAAACGTCTTATAAAAGTTT 57.448 29.630 13.51 13.51 38.40 2.66
5835 6262 8.543862 AACGTCTTATAAAAGTTTACAGAGGG 57.456 34.615 13.70 5.91 31.70 4.30
5836 6263 7.899973 ACGTCTTATAAAAGTTTACAGAGGGA 58.100 34.615 13.70 0.00 31.70 4.20
5871 6367 1.347707 TCGGATGGGCCATGATTAGAC 59.652 52.381 26.77 7.21 35.94 2.59
5872 6368 1.072173 CGGATGGGCCATGATTAGACA 59.928 52.381 26.77 0.00 35.94 3.41
5873 6369 2.290514 CGGATGGGCCATGATTAGACAT 60.291 50.000 26.77 0.00 35.94 3.06
5910 6406 6.123045 ACAGTAATAGTTGGGCTGTAAAGT 57.877 37.500 0.00 0.00 38.46 2.66
5934 6430 2.799207 GCTCATCCGAAGCTCTTCTCAG 60.799 54.545 7.88 0.00 37.44 3.35
5968 6464 4.022935 CAGCTTGTGAACTAATGCAAGGAA 60.023 41.667 0.00 0.00 38.83 3.36
5997 6493 3.896888 TGGTCCAGCTCATTTTCATTTGT 59.103 39.130 0.00 0.00 0.00 2.83
6062 6559 9.342308 CCAGGTGTATAATGTGATCATTAGTTT 57.658 33.333 0.00 0.00 45.71 2.66
6080 6577 7.900782 TTAGTTTAGCCTAATGTGTCTGTTC 57.099 36.000 0.00 0.00 0.00 3.18
6095 6592 5.758296 GTGTCTGTTCTCAACTTACCATTCA 59.242 40.000 0.00 0.00 0.00 2.57
6105 6602 7.839705 TCTCAACTTACCATTCATACTCTAGGT 59.160 37.037 0.00 0.00 0.00 3.08
6111 6608 9.712305 CTTACCATTCATACTCTAGGTTAATGG 57.288 37.037 18.51 18.51 41.73 3.16
6130 6627 3.023119 TGGGACACAATGACATAATGGC 58.977 45.455 0.00 0.00 0.00 4.40
6131 6628 3.023119 GGGACACAATGACATAATGGCA 58.977 45.455 6.95 0.00 41.29 4.92
6133 6630 4.261741 GGGACACAATGACATAATGGCATC 60.262 45.833 0.00 0.00 44.20 3.91
6134 6631 4.261741 GGACACAATGACATAATGGCATCC 60.262 45.833 0.00 0.00 44.20 3.51
6135 6632 4.279982 ACACAATGACATAATGGCATCCA 58.720 39.130 0.00 0.00 44.20 3.41
6136 6633 4.340097 ACACAATGACATAATGGCATCCAG 59.660 41.667 0.00 0.00 44.20 3.86
6137 6634 4.581409 CACAATGACATAATGGCATCCAGA 59.419 41.667 0.00 0.00 44.20 3.86
6138 6635 4.581824 ACAATGACATAATGGCATCCAGAC 59.418 41.667 0.00 0.00 44.20 3.51
6139 6636 3.929955 TGACATAATGGCATCCAGACA 57.070 42.857 0.00 0.00 41.62 3.41
6140 6637 4.233632 TGACATAATGGCATCCAGACAA 57.766 40.909 0.00 0.00 39.98 3.18
6141 6638 4.201657 TGACATAATGGCATCCAGACAAG 58.798 43.478 0.00 0.00 39.98 3.16
6142 6639 2.954318 ACATAATGGCATCCAGACAAGC 59.046 45.455 0.00 0.00 39.98 4.01
6143 6640 2.804986 TAATGGCATCCAGACAAGCA 57.195 45.000 0.00 0.00 39.98 3.91
6144 6641 1.927487 AATGGCATCCAGACAAGCAA 58.073 45.000 0.00 0.00 39.98 3.91
6145 6642 1.471119 ATGGCATCCAGACAAGCAAG 58.529 50.000 0.00 0.00 39.98 4.01
6275 6772 4.551388 CACGGCTTATAGATTCCTCAGAC 58.449 47.826 0.00 0.00 0.00 3.51
6280 6777 5.241949 GGCTTATAGATTCCTCAGACGAGAA 59.758 44.000 0.00 0.00 42.34 2.87
6281 6778 6.239064 GGCTTATAGATTCCTCAGACGAGAAA 60.239 42.308 0.00 0.00 42.34 2.52
6286 6783 6.968263 AGATTCCTCAGACGAGAAATATGA 57.032 37.500 0.00 0.00 42.34 2.15
6298 6795 3.748083 AGAAATATGATCCACTGCGCAT 58.252 40.909 12.24 0.00 0.00 4.73
6305 6802 2.009774 GATCCACTGCGCATGTACTTT 58.990 47.619 12.24 0.00 0.00 2.66
6359 6856 1.433592 AGAGGAGTGGAGGGTGTAACT 59.566 52.381 0.00 0.00 36.74 2.24
6437 6934 0.815734 GTCGTAGCCTGGTGAAGCTA 59.184 55.000 0.00 0.00 40.56 3.32
6497 6994 6.351711 CCTTCTGGTACTCTCATCATCTGTTT 60.352 42.308 0.00 0.00 0.00 2.83
7102 7600 2.561733 TCTCGATAACTTCAGCACCG 57.438 50.000 0.00 0.00 0.00 4.94
7486 7991 2.832838 TGGAGGAAGAGGATGTAAGCA 58.167 47.619 0.00 0.00 0.00 3.91
7498 8003 3.612423 GGATGTAAGCAAATTTTCCGTGC 59.388 43.478 0.00 0.00 38.59 5.34
7514 8019 3.131577 TCCGTGCACCCTACTACAATTAG 59.868 47.826 12.15 0.00 0.00 1.73
7515 8020 3.131577 CCGTGCACCCTACTACAATTAGA 59.868 47.826 12.15 0.00 0.00 2.10
7516 8021 4.382254 CCGTGCACCCTACTACAATTAGAA 60.382 45.833 12.15 0.00 0.00 2.10
7517 8022 4.804139 CGTGCACCCTACTACAATTAGAAG 59.196 45.833 12.15 0.00 0.00 2.85
7518 8023 5.623824 CGTGCACCCTACTACAATTAGAAGT 60.624 44.000 12.15 0.00 0.00 3.01
7574 8079 8.701908 ACTGCAATCTATATCATGTTTCCAAT 57.298 30.769 0.00 0.00 0.00 3.16
7601 8106 3.640498 GTCTTCCTTATACCCTAACCGCT 59.360 47.826 0.00 0.00 0.00 5.52
7843 8404 4.379082 GCTTACTTTTATTGGGTGACACGG 60.379 45.833 0.00 0.00 0.00 4.94
7911 8472 6.313519 TGCTGAACTAGATCAAAGGGTAAT 57.686 37.500 4.11 0.00 0.00 1.89
7919 8480 7.454225 ACTAGATCAAAGGGTAATTATCAGCC 58.546 38.462 0.00 0.00 0.00 4.85
7974 8535 4.091424 CGCAATTTAGTTCTTACAGCTGC 58.909 43.478 15.27 0.00 0.00 5.25
7987 8548 6.418101 TCTTACAGCTGCCTTTCTTCAATAT 58.582 36.000 15.27 0.00 0.00 1.28
8029 8590 6.018262 TGCACAACTATCTCACAAGTGTTTAC 60.018 38.462 0.00 0.00 0.00 2.01
8032 8593 6.982141 ACAACTATCTCACAAGTGTTTACGAA 59.018 34.615 0.00 0.00 0.00 3.85
8086 8647 1.136147 GCAAGCTCTCAACCATGCG 59.864 57.895 0.00 0.00 0.00 4.73
8095 8656 0.250124 TCAACCATGCGAAGAACGGT 60.250 50.000 0.00 0.00 42.83 4.83
8219 8780 3.577805 ATTATTAGGGTGAGGTGTGGC 57.422 47.619 0.00 0.00 0.00 5.01
8231 8792 1.069049 AGGTGTGGCAAAGAAACATGC 59.931 47.619 0.00 0.00 41.82 4.06
8394 8955 8.678593 AGGTAAGATACTAATTAAAGCTTGCC 57.321 34.615 17.59 17.59 37.06 4.52
8395 8956 8.495260 AGGTAAGATACTAATTAAAGCTTGCCT 58.505 33.333 20.20 20.20 40.53 4.75
8396 8957 9.121658 GGTAAGATACTAATTAAAGCTTGCCTT 57.878 33.333 17.83 0.00 34.95 4.35
8403 8964 8.178313 ACTAATTAAAGCTTGCCTTTTAGTGT 57.822 30.769 0.00 0.00 40.85 3.55
8404 8965 9.292195 ACTAATTAAAGCTTGCCTTTTAGTGTA 57.708 29.630 0.00 0.00 40.85 2.90
8412 8973 4.846779 TGCCTTTTAGTGTAGCCTTTTG 57.153 40.909 0.00 0.00 0.00 2.44
8446 9007 3.069586 TGCGAAATACTCCTACCCATCAG 59.930 47.826 0.00 0.00 0.00 2.90
8461 9022 4.634443 ACCCATCAGCACGTTTTAGTTATC 59.366 41.667 0.00 0.00 0.00 1.75
8534 9099 9.707957 TGTCCAATTTGGGTATGAACTTATATT 57.292 29.630 15.37 0.00 38.32 1.28
8559 9124 6.899393 TCTGATTGTTGCAAAGAAGGTAAT 57.101 33.333 0.00 0.00 30.39 1.89
8575 9140 3.191371 AGGTAATTGCTACTGTTGCTTGC 59.809 43.478 14.81 5.92 0.00 4.01
8576 9141 3.057596 GGTAATTGCTACTGTTGCTTGCA 60.058 43.478 14.81 0.00 0.00 4.08
8715 9281 6.607019 ACAGGTAAACCTCACAATAGGAAAA 58.393 36.000 0.00 0.00 46.65 2.29
8745 9313 3.302434 GGTGTGTTGTATGTATGTCGTCG 59.698 47.826 0.00 0.00 0.00 5.12
8754 9322 1.790043 TGTATGTCGTCGTTGCTTGTG 59.210 47.619 0.00 0.00 0.00 3.33
8777 9345 1.018226 CGCTGGACTTTGGAGAGCAG 61.018 60.000 0.00 0.00 0.00 4.24
8781 9349 1.301293 GACTTTGGAGAGCAGGGGG 59.699 63.158 0.00 0.00 0.00 5.40
8790 9358 1.773653 GAGAGCAGGGGGAAGAATCAT 59.226 52.381 0.00 0.00 0.00 2.45
8839 9407 0.108377 ATTACGCGATGGACACTGCA 60.108 50.000 15.93 0.00 0.00 4.41
8845 9413 0.376152 CGATGGACACTGCATTGCTC 59.624 55.000 10.49 0.00 0.00 4.26
8846 9414 0.376152 GATGGACACTGCATTGCTCG 59.624 55.000 10.49 3.71 0.00 5.03
8871 9439 1.777272 ACTCAAGAAAGGAAGCTGGGT 59.223 47.619 0.00 0.00 0.00 4.51
8932 9500 9.304335 TGGATTCAGAAGTATATATTACGGTCA 57.696 33.333 0.00 0.00 0.00 4.02
9352 9923 2.571212 GGTTGTGTGATGTTGAGACCA 58.429 47.619 0.00 0.00 0.00 4.02
9636 10238 0.531974 AGAAACTCAGCAAACGCCGA 60.532 50.000 0.00 0.00 0.00 5.54
9678 10280 3.114616 CGCCTCGAGTGCCTTGTG 61.115 66.667 12.31 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.434319 GTGACGGCACCATGGCTG 61.434 66.667 11.38 10.72 45.74 4.85
43 44 1.564348 GGTCTCTCTCTCTCCCTCTGT 59.436 57.143 0.00 0.00 0.00 3.41
49 50 0.180406 AGCGAGGTCTCTCTCTCTCC 59.820 60.000 0.00 0.00 37.86 3.71
94 151 1.066716 TGGATCATTGGCTTTGCTTGC 60.067 47.619 0.00 0.00 0.00 4.01
95 152 2.232941 ACTGGATCATTGGCTTTGCTTG 59.767 45.455 0.00 0.00 0.00 4.01
96 153 2.232941 CACTGGATCATTGGCTTTGCTT 59.767 45.455 0.00 0.00 0.00 3.91
97 154 1.822990 CACTGGATCATTGGCTTTGCT 59.177 47.619 0.00 0.00 0.00 3.91
192 249 5.441718 AGATAGATAGGGAGAGAGAGCAG 57.558 47.826 0.00 0.00 0.00 4.24
193 250 6.101150 GGATAGATAGATAGGGAGAGAGAGCA 59.899 46.154 0.00 0.00 0.00 4.26
196 253 6.619437 CCAGGATAGATAGATAGGGAGAGAGA 59.381 46.154 0.00 0.00 0.00 3.10
201 258 5.136068 TGCCAGGATAGATAGATAGGGAG 57.864 47.826 0.00 0.00 0.00 4.30
204 261 3.640967 GCCTGCCAGGATAGATAGATAGG 59.359 52.174 16.85 0.00 37.67 2.57
207 264 3.106054 CTGCCTGCCAGGATAGATAGAT 58.894 50.000 16.85 0.00 37.67 1.98
209 266 1.066286 GCTGCCTGCCAGGATAGATAG 60.066 57.143 16.85 3.28 42.03 2.08
211 268 1.759881 GCTGCCTGCCAGGATAGAT 59.240 57.895 16.85 0.00 42.03 1.98
272 336 0.251916 CAAGTATGAGTGGGCGGGAA 59.748 55.000 0.00 0.00 0.00 3.97
273 337 1.904771 CAAGTATGAGTGGGCGGGA 59.095 57.895 0.00 0.00 0.00 5.14
286 350 1.211969 GAGCGACGGTCAGCAAGTA 59.788 57.895 21.39 0.00 35.48 2.24
287 351 2.049063 GAGCGACGGTCAGCAAGT 60.049 61.111 21.39 6.40 35.48 3.16
299 363 1.524165 GGGAGAGAGTAGCGAGCGA 60.524 63.158 0.00 0.00 0.00 4.93
301 365 2.548295 CGGGGAGAGAGTAGCGAGC 61.548 68.421 0.00 0.00 0.00 5.03
302 366 1.894756 CCGGGGAGAGAGTAGCGAG 60.895 68.421 0.00 0.00 0.00 5.03
303 367 2.192443 CCGGGGAGAGAGTAGCGA 59.808 66.667 0.00 0.00 0.00 4.93
305 369 2.522193 CCCCGGGGAGAGAGTAGC 60.522 72.222 38.41 0.00 37.50 3.58
306 370 2.522193 GCCCCGGGGAGAGAGTAG 60.522 72.222 44.86 14.03 37.50 2.57
307 371 3.352748 TGCCCCGGGGAGAGAGTA 61.353 66.667 44.86 15.95 37.50 2.59
458 534 3.511595 CGCTCGTGGCCATGCATT 61.512 61.111 20.86 0.00 37.74 3.56
516 592 4.082354 CGTAGTAGTAAAGCTGGTCAAGGT 60.082 45.833 0.00 0.00 38.63 3.50
536 615 3.118702 TGAGGTTTCACTTTCACACCGTA 60.119 43.478 0.00 0.00 32.32 4.02
606 693 1.518572 AGGAAATACGAGCGCACGG 60.519 57.895 29.69 12.93 37.61 4.94
612 699 2.608261 CCGATCTCCAGGAAATACGAGC 60.608 54.545 0.00 0.00 0.00 5.03
644 731 4.079253 AGATTGGTTAACGACAAAGCCAT 58.921 39.130 0.00 0.00 27.26 4.40
705 822 4.511246 ATGGGGGCTGTGGCGATG 62.511 66.667 0.00 0.00 39.81 3.84
706 823 4.195334 GATGGGGGCTGTGGCGAT 62.195 66.667 0.00 0.00 39.81 4.58
735 862 4.994201 TGTCGTGCGACTCCGTGC 62.994 66.667 22.54 0.00 44.80 5.34
736 863 1.876453 CTTTGTCGTGCGACTCCGTG 61.876 60.000 22.54 7.53 44.80 4.94
737 864 1.660575 CTTTGTCGTGCGACTCCGT 60.661 57.895 22.54 0.00 44.80 4.69
738 865 3.000080 GCTTTGTCGTGCGACTCCG 62.000 63.158 22.54 12.68 44.80 4.63
739 866 2.668280 GGCTTTGTCGTGCGACTCC 61.668 63.158 22.54 14.91 44.80 3.85
740 867 1.664965 AGGCTTTGTCGTGCGACTC 60.665 57.895 22.54 10.80 44.80 3.36
744 871 4.389576 GCCAGGCTTTGTCGTGCG 62.390 66.667 3.29 0.00 0.00 5.34
746 873 2.620112 CCAGCCAGGCTTTGTCGTG 61.620 63.158 12.86 0.00 36.40 4.35
810 943 2.422832 GCGCTGTAGGAGTACTTACTGT 59.577 50.000 0.00 0.00 36.50 3.55
848 981 1.564622 CACGCAACAGTCCAACGAG 59.435 57.895 0.00 0.00 0.00 4.18
867 1000 1.819903 GACGAGAGGGGTGATATAGCC 59.180 57.143 0.00 0.00 46.47 3.93
969 1108 1.003355 CTTCCCTTCGGCAGAGCAA 60.003 57.895 0.00 0.00 0.00 3.91
1769 1931 2.477845 CGAGCAAAGCGGCTTGAG 59.522 61.111 17.16 13.05 46.28 3.02
1781 1943 0.691078 ATTAAGAGGGGGAGCGAGCA 60.691 55.000 0.00 0.00 0.00 4.26
1796 1958 2.092103 ACCAAATGCGGCTAGGGATTAA 60.092 45.455 0.00 0.00 0.00 1.40
2075 2237 2.350498 GTGATTGGATTGAACCGTACCG 59.650 50.000 0.00 0.00 0.00 4.02
2159 2327 1.302351 GAACAGCAGCAGGAGCAGT 60.302 57.895 0.00 0.00 45.49 4.40
2160 2328 0.605860 AAGAACAGCAGCAGGAGCAG 60.606 55.000 0.00 0.00 45.49 4.24
2161 2329 0.604780 GAAGAACAGCAGCAGGAGCA 60.605 55.000 0.00 0.00 45.49 4.26
2162 2330 0.604780 TGAAGAACAGCAGCAGGAGC 60.605 55.000 0.00 0.00 42.56 4.70
2163 2331 2.110901 ATGAAGAACAGCAGCAGGAG 57.889 50.000 0.00 0.00 0.00 3.69
2164 2332 2.675032 CGTATGAAGAACAGCAGCAGGA 60.675 50.000 0.00 0.00 0.00 3.86
2165 2333 1.662629 CGTATGAAGAACAGCAGCAGG 59.337 52.381 0.00 0.00 0.00 4.85
2188 2356 6.127814 GGGTAAAAAGGAAAGGAAATACGGAG 60.128 42.308 0.00 0.00 0.00 4.63
2189 2357 5.711506 GGGTAAAAAGGAAAGGAAATACGGA 59.288 40.000 0.00 0.00 0.00 4.69
2190 2358 5.105635 GGGGTAAAAAGGAAAGGAAATACGG 60.106 44.000 0.00 0.00 0.00 4.02
2191 2359 5.392272 CGGGGTAAAAAGGAAAGGAAATACG 60.392 44.000 0.00 0.00 0.00 3.06
2242 2410 7.791029 ACCAAAATGGAAGAATTTGTACTGTT 58.209 30.769 2.85 0.00 40.96 3.16
2400 2571 3.181458 GGGGTCTTGATTAGTCGGCAATA 60.181 47.826 0.00 0.00 0.00 1.90
2462 2649 2.748058 AAAGAGATTGGCGCGTGGGT 62.748 55.000 8.43 0.00 0.00 4.51
2470 2657 4.450053 AGCTCATGTAGAAAGAGATTGGC 58.550 43.478 0.00 0.00 0.00 4.52
2499 2686 1.621814 CCTCCCGTGTTTCTAGAACCA 59.378 52.381 4.18 0.66 0.00 3.67
2500 2687 1.897802 TCCTCCCGTGTTTCTAGAACC 59.102 52.381 4.18 0.00 0.00 3.62
2540 2732 0.387929 GACTTCCATCGCCATCCGTA 59.612 55.000 0.00 0.00 38.35 4.02
2570 2762 0.888619 TGCGTTCGATCTGGTCTTCT 59.111 50.000 0.00 0.00 0.00 2.85
2626 2819 7.233962 TCCCTGTTGAACGGATTATAATAGCTA 59.766 37.037 5.57 0.00 0.00 3.32
2689 2882 3.010420 TGTCACAATCACAACAACGGAA 58.990 40.909 0.00 0.00 0.00 4.30
2737 2931 3.568007 ACAGCTTGGAAAAAGCACGATAA 59.432 39.130 12.22 0.00 45.30 1.75
2739 2933 1.956477 ACAGCTTGGAAAAAGCACGAT 59.044 42.857 12.22 0.00 45.30 3.73
2741 2935 1.065401 TCACAGCTTGGAAAAAGCACG 59.935 47.619 12.22 5.60 45.30 5.34
2742 2936 2.869233 TCACAGCTTGGAAAAAGCAC 57.131 45.000 12.22 0.00 45.30 4.40
2800 3008 4.381185 GCATGATGATCTGGAAACAAAGCA 60.381 41.667 0.00 0.00 42.06 3.91
2801 3009 4.110482 GCATGATGATCTGGAAACAAAGC 58.890 43.478 0.00 0.00 42.06 3.51
2802 3010 5.578005 AGCATGATGATCTGGAAACAAAG 57.422 39.130 0.00 0.00 42.06 2.77
2837 3046 4.547859 AGCCTCGCCAGCTTATTG 57.452 55.556 0.00 0.00 37.24 1.90
2906 3115 0.107703 CAATGTAGCCGAGGCCTTCA 60.108 55.000 6.77 8.07 43.17 3.02
2938 3147 2.483889 CGGGAAGCCAGAAGGAATCTAC 60.484 54.545 0.00 0.00 36.32 2.59
2993 3202 1.680338 AGTGTTGCTGTCTTGGGAAC 58.320 50.000 0.00 0.00 35.96 3.62
2997 3206 4.836125 AACAATAGTGTTGCTGTCTTGG 57.164 40.909 7.92 0.00 46.40 3.61
3070 3358 4.651867 CTGGAGGACAGCAATGGG 57.348 61.111 0.00 0.00 40.97 4.00
3079 3367 5.753721 ATCTAGGATATTTGCTGGAGGAC 57.246 43.478 0.00 0.00 34.39 3.85
3550 3844 1.311859 CTCACCAGCTTGAAGCACAA 58.688 50.000 20.45 0.00 45.56 3.33
3604 3898 5.116180 ACGGCAAATTATGAGAAGATTCGA 58.884 37.500 0.00 0.00 0.00 3.71
3646 3940 2.941064 ACATACAGTCAGATGTGCATGC 59.059 45.455 11.82 11.82 34.98 4.06
3829 4177 5.830991 TGTATTTGATTAGGGTAATGTGCCC 59.169 40.000 0.00 0.00 46.43 5.36
3937 4285 9.515226 ACTAAATAAGACAAATAAGACTTGGCA 57.485 29.630 0.00 0.00 33.96 4.92
4046 4394 9.035607 AGAGACGCATACACATAAGAAATTTAG 57.964 33.333 0.00 0.00 0.00 1.85
4249 4670 0.676782 CCAAACTGTAGAAGGCCCCG 60.677 60.000 0.00 0.00 0.00 5.73
4352 4773 0.323629 GACCCAATCAACAGTCGGGA 59.676 55.000 0.00 0.00 39.44 5.14
4353 4774 0.036164 TGACCCAATCAACAGTCGGG 59.964 55.000 0.00 0.00 43.02 5.14
4378 4802 5.918576 GCCATTGTGTTGTCTAACTTAAACC 59.081 40.000 0.00 0.00 37.68 3.27
4383 4807 3.832527 AGGCCATTGTGTTGTCTAACTT 58.167 40.909 5.01 0.00 37.68 2.66
4519 4943 7.924412 AGCATTTAAAGTGATAGCCAAATGATG 59.076 33.333 8.58 0.00 36.11 3.07
4579 5003 7.363793 GCTGGTAATAAGTTCCATCAATTTGGT 60.364 37.037 0.00 0.00 38.01 3.67
4642 5066 7.709182 CGTGTCCCAACATTAAGTAGAATATGA 59.291 37.037 0.00 0.00 37.81 2.15
4678 5102 3.803231 GCTGCAATGACAATCACAAACAA 59.197 39.130 0.00 0.00 0.00 2.83
4744 5168 2.368875 GCTCAAGGCCTGGCTATAGTTA 59.631 50.000 19.68 0.00 34.27 2.24
4864 5288 0.391263 GTACCCAGAGGCGTTTCCAG 60.391 60.000 0.00 0.00 37.29 3.86
4954 5378 3.935203 CACAGTAGCCCATCACACTAAAG 59.065 47.826 0.00 0.00 0.00 1.85
5029 5453 2.198287 GCGGCATACGGGTAGGAGA 61.198 63.158 0.00 0.00 44.51 3.71
5139 5563 7.692088 TCAACAAACAATAACAAAAGCAATGG 58.308 30.769 0.00 0.00 0.00 3.16
5180 5604 0.392998 ATTGGACAGTCGGACATGGC 60.393 55.000 11.27 7.79 0.00 4.40
5189 5613 5.415701 TCTGCAGGAAATTTATTGGACAGTC 59.584 40.000 15.13 0.00 0.00 3.51
5254 5678 6.655003 GTGGAGAGATATCTTTTCCAACACAA 59.345 38.462 28.02 12.11 39.82 3.33
5258 5682 6.410540 AGTGTGGAGAGATATCTTTTCCAAC 58.589 40.000 28.02 25.43 39.82 3.77
5259 5683 6.627087 AGTGTGGAGAGATATCTTTTCCAA 57.373 37.500 28.02 19.74 39.82 3.53
5311 5736 3.749226 TGTATTCACATCAACCACTGCA 58.251 40.909 0.00 0.00 0.00 4.41
5318 5743 5.882553 TGCATCACATGTATTCACATCAAC 58.117 37.500 0.00 0.00 43.73 3.18
5324 5749 7.585286 ATTTTGTTGCATCACATGTATTCAC 57.415 32.000 0.00 0.00 0.00 3.18
5380 5806 1.628846 AGACCCACATGTAGGAACCAC 59.371 52.381 17.82 3.30 0.00 4.16
5417 5843 2.041081 CCCAAGTCCCTTTCATGGTGTA 59.959 50.000 0.00 0.00 0.00 2.90
5422 5848 3.433306 TGTACCCAAGTCCCTTTCATG 57.567 47.619 0.00 0.00 0.00 3.07
5426 5852 1.982958 ACGATGTACCCAAGTCCCTTT 59.017 47.619 0.00 0.00 0.00 3.11
5428 5854 2.537633 TACGATGTACCCAAGTCCCT 57.462 50.000 0.00 0.00 0.00 4.20
5434 5860 5.864418 AAGCTCTATTACGATGTACCCAA 57.136 39.130 0.00 0.00 0.00 4.12
5435 5861 6.066690 ACTAAGCTCTATTACGATGTACCCA 58.933 40.000 0.00 0.00 0.00 4.51
5436 5862 6.572167 ACTAAGCTCTATTACGATGTACCC 57.428 41.667 0.00 0.00 0.00 3.69
5443 5869 9.481340 TCGTCTATTAACTAAGCTCTATTACGA 57.519 33.333 0.00 0.00 0.00 3.43
5444 5870 9.527566 GTCGTCTATTAACTAAGCTCTATTACG 57.472 37.037 0.00 0.00 0.00 3.18
5511 5937 7.823799 CCCATTTTCTAAACTGCACCAATTATT 59.176 33.333 0.00 0.00 0.00 1.40
5552 5978 7.546667 CAGCAACTAGGCAAAATATGATTGTTT 59.453 33.333 0.00 0.00 35.83 2.83
5571 5997 9.979578 TTTGACATGATTAAATTAACAGCAACT 57.020 25.926 0.00 0.00 0.00 3.16
5587 6013 8.938906 GCACCAATAAAAAGATTTTGACATGAT 58.061 29.630 0.00 0.00 0.00 2.45
5588 6014 7.387397 GGCACCAATAAAAAGATTTTGACATGA 59.613 33.333 0.00 0.00 0.00 3.07
5589 6015 7.388500 AGGCACCAATAAAAAGATTTTGACATG 59.612 33.333 0.00 0.00 0.00 3.21
5590 6016 7.388500 CAGGCACCAATAAAAAGATTTTGACAT 59.612 33.333 0.00 0.00 0.00 3.06
5591 6017 6.705381 CAGGCACCAATAAAAAGATTTTGACA 59.295 34.615 0.00 0.00 0.00 3.58
5592 6018 6.705825 ACAGGCACCAATAAAAAGATTTTGAC 59.294 34.615 0.00 0.00 0.00 3.18
5593 6019 6.825610 ACAGGCACCAATAAAAAGATTTTGA 58.174 32.000 0.00 0.00 0.00 2.69
5594 6020 7.495135 AACAGGCACCAATAAAAAGATTTTG 57.505 32.000 0.00 0.00 0.00 2.44
5611 6037 7.759489 AGAACAAAACATAAGATAACAGGCA 57.241 32.000 0.00 0.00 0.00 4.75
5612 6038 9.162764 TCTAGAACAAAACATAAGATAACAGGC 57.837 33.333 0.00 0.00 0.00 4.85
5634 6060 9.814899 CAATGACTATCCCATAGCTTAATCTAG 57.185 37.037 0.00 0.00 36.30 2.43
5637 6064 8.854614 AACAATGACTATCCCATAGCTTAATC 57.145 34.615 0.00 0.00 36.30 1.75
5667 6094 6.539649 TTGTGTAAGTCAAATACTGCTGAC 57.460 37.500 0.00 0.00 41.90 3.51
5715 6142 8.469309 ACACTCATATATAAAAGCATGCCTTT 57.531 30.769 17.86 17.86 45.49 3.11
5742 6169 9.005777 GTATATGTGACCAAAGGTTGTTTCTTA 57.994 33.333 0.00 0.00 35.25 2.10
5772 6199 7.224557 GGTAGTGACCTAAAACGTTTTACAGAA 59.775 37.037 25.60 10.59 43.16 3.02
5775 6202 6.843069 GGTAGTGACCTAAAACGTTTTACA 57.157 37.500 25.60 19.79 43.16 2.41
5793 6220 5.320277 AGACGTTTAGGTCACTAAGGTAGT 58.680 41.667 5.50 0.00 40.12 2.73
5794 6221 5.893897 AGACGTTTAGGTCACTAAGGTAG 57.106 43.478 5.50 0.00 40.12 3.18
5795 6222 7.944729 ATAAGACGTTTAGGTCACTAAGGTA 57.055 36.000 5.50 0.00 40.12 3.08
5796 6223 6.847421 ATAAGACGTTTAGGTCACTAAGGT 57.153 37.500 5.50 0.00 40.12 3.50
5797 6224 9.643693 TTTTATAAGACGTTTAGGTCACTAAGG 57.356 33.333 5.50 0.00 40.12 2.69
5810 6237 8.370182 TCCCTCTGTAAACTTTTATAAGACGTT 58.630 33.333 0.00 0.00 35.30 3.99
5811 6238 7.899973 TCCCTCTGTAAACTTTTATAAGACGT 58.100 34.615 0.00 0.00 35.30 4.34
5812 6239 8.033626 ACTCCCTCTGTAAACTTTTATAAGACG 58.966 37.037 0.00 0.00 35.30 4.18
5815 6242 9.597170 GGTACTCCCTCTGTAAACTTTTATAAG 57.403 37.037 0.00 0.00 37.40 1.73
5816 6243 9.103582 TGGTACTCCCTCTGTAAACTTTTATAA 57.896 33.333 0.00 0.00 0.00 0.98
5817 6244 8.669055 TGGTACTCCCTCTGTAAACTTTTATA 57.331 34.615 0.00 0.00 0.00 0.98
5821 6248 6.499350 TGTATGGTACTCCCTCTGTAAACTTT 59.501 38.462 0.00 0.00 0.00 2.66
5822 6249 6.021030 TGTATGGTACTCCCTCTGTAAACTT 58.979 40.000 0.00 0.00 0.00 2.66
5824 6251 5.655532 TCTGTATGGTACTCCCTCTGTAAAC 59.344 44.000 0.00 0.00 0.00 2.01
5825 6252 5.834460 TCTGTATGGTACTCCCTCTGTAAA 58.166 41.667 0.00 0.00 0.00 2.01
5826 6253 5.461516 TCTGTATGGTACTCCCTCTGTAA 57.538 43.478 0.00 0.00 0.00 2.41
5827 6254 5.044328 ACTTCTGTATGGTACTCCCTCTGTA 60.044 44.000 0.00 0.00 0.00 2.74
5830 6257 4.538738 GACTTCTGTATGGTACTCCCTCT 58.461 47.826 0.00 0.00 0.00 3.69
5831 6258 3.315749 CGACTTCTGTATGGTACTCCCTC 59.684 52.174 0.00 0.00 0.00 4.30
5833 6260 2.361438 CCGACTTCTGTATGGTACTCCC 59.639 54.545 0.00 0.00 0.00 4.30
5834 6261 3.285484 TCCGACTTCTGTATGGTACTCC 58.715 50.000 0.00 0.00 0.00 3.85
5835 6262 4.261656 CCATCCGACTTCTGTATGGTACTC 60.262 50.000 0.00 0.00 33.81 2.59
5836 6263 3.637229 CCATCCGACTTCTGTATGGTACT 59.363 47.826 0.00 0.00 33.81 2.73
5886 6382 7.248743 ACTTTACAGCCCAACTATTACTGTA 57.751 36.000 0.00 0.00 41.56 2.74
5936 6432 8.559536 GCATTAGTTCACAAGCTGCTATATTTA 58.440 33.333 0.90 0.00 0.00 1.40
5937 6433 7.067372 TGCATTAGTTCACAAGCTGCTATATTT 59.933 33.333 0.90 0.00 0.00 1.40
5938 6434 6.543465 TGCATTAGTTCACAAGCTGCTATATT 59.457 34.615 0.90 0.00 0.00 1.28
5939 6435 6.057533 TGCATTAGTTCACAAGCTGCTATAT 58.942 36.000 0.90 0.00 0.00 0.86
5940 6436 5.427378 TGCATTAGTTCACAAGCTGCTATA 58.573 37.500 0.90 0.00 0.00 1.31
5941 6437 4.264253 TGCATTAGTTCACAAGCTGCTAT 58.736 39.130 0.90 0.00 0.00 2.97
5942 6438 3.673902 TGCATTAGTTCACAAGCTGCTA 58.326 40.909 0.90 0.00 0.00 3.49
5943 6439 2.507484 TGCATTAGTTCACAAGCTGCT 58.493 42.857 0.00 0.00 0.00 4.24
5944 6440 2.995466 TGCATTAGTTCACAAGCTGC 57.005 45.000 0.00 0.00 0.00 5.25
5945 6441 3.503363 TCCTTGCATTAGTTCACAAGCTG 59.497 43.478 0.00 0.00 38.52 4.24
5946 6442 3.754965 TCCTTGCATTAGTTCACAAGCT 58.245 40.909 0.00 0.00 38.52 3.74
5947 6443 4.503741 TTCCTTGCATTAGTTCACAAGC 57.496 40.909 0.00 0.00 38.52 4.01
5948 6444 5.403466 GCTTTTCCTTGCATTAGTTCACAAG 59.597 40.000 0.00 0.00 39.35 3.16
5949 6445 5.068987 AGCTTTTCCTTGCATTAGTTCACAA 59.931 36.000 0.00 0.00 0.00 3.33
5950 6446 4.584325 AGCTTTTCCTTGCATTAGTTCACA 59.416 37.500 0.00 0.00 0.00 3.58
5951 6447 4.919754 CAGCTTTTCCTTGCATTAGTTCAC 59.080 41.667 0.00 0.00 0.00 3.18
5952 6448 4.584325 ACAGCTTTTCCTTGCATTAGTTCA 59.416 37.500 0.00 0.00 0.00 3.18
5953 6449 4.919754 CACAGCTTTTCCTTGCATTAGTTC 59.080 41.667 0.00 0.00 0.00 3.01
6062 6559 5.246203 AGTTGAGAACAGACACATTAGGCTA 59.754 40.000 0.00 0.00 0.00 3.93
6063 6560 4.040952 AGTTGAGAACAGACACATTAGGCT 59.959 41.667 0.00 0.00 0.00 4.58
6080 6577 8.012957 ACCTAGAGTATGAATGGTAAGTTGAG 57.987 38.462 0.00 0.00 0.00 3.02
6095 6592 7.347222 TCATTGTGTCCCATTAACCTAGAGTAT 59.653 37.037 0.00 0.00 0.00 2.12
6105 6602 6.183360 GCCATTATGTCATTGTGTCCCATTAA 60.183 38.462 0.00 0.00 0.00 1.40
6110 6607 3.023119 TGCCATTATGTCATTGTGTCCC 58.977 45.455 0.00 0.00 0.00 4.46
6111 6608 4.261741 GGATGCCATTATGTCATTGTGTCC 60.262 45.833 0.00 0.00 0.00 4.02
6118 6615 4.442401 TGTCTGGATGCCATTATGTCAT 57.558 40.909 0.00 0.00 30.82 3.06
6119 6616 3.929955 TGTCTGGATGCCATTATGTCA 57.070 42.857 0.00 0.00 30.82 3.58
6120 6617 3.004106 GCTTGTCTGGATGCCATTATGTC 59.996 47.826 0.00 0.00 30.82 3.06
6121 6618 2.954318 GCTTGTCTGGATGCCATTATGT 59.046 45.455 0.00 0.00 30.82 2.29
6122 6619 2.953648 TGCTTGTCTGGATGCCATTATG 59.046 45.455 0.00 0.00 30.82 1.90
6126 6623 1.471119 CTTGCTTGTCTGGATGCCAT 58.529 50.000 0.00 0.00 30.82 4.40
6127 6624 0.609957 CCTTGCTTGTCTGGATGCCA 60.610 55.000 0.00 0.00 0.00 4.92
6128 6625 1.318158 CCCTTGCTTGTCTGGATGCC 61.318 60.000 0.00 0.00 0.00 4.40
6129 6626 0.610232 ACCCTTGCTTGTCTGGATGC 60.610 55.000 0.00 0.00 0.00 3.91
6130 6627 1.915141 AACCCTTGCTTGTCTGGATG 58.085 50.000 0.00 0.00 0.00 3.51
6131 6628 2.375174 TGTAACCCTTGCTTGTCTGGAT 59.625 45.455 0.00 0.00 0.00 3.41
6132 6629 1.771854 TGTAACCCTTGCTTGTCTGGA 59.228 47.619 0.00 0.00 0.00 3.86
6133 6630 2.154462 CTGTAACCCTTGCTTGTCTGG 58.846 52.381 0.00 0.00 0.00 3.86
6134 6631 1.537202 GCTGTAACCCTTGCTTGTCTG 59.463 52.381 0.00 0.00 0.00 3.51
6135 6632 1.421646 AGCTGTAACCCTTGCTTGTCT 59.578 47.619 0.00 0.00 30.96 3.41
6136 6633 1.897560 AGCTGTAACCCTTGCTTGTC 58.102 50.000 0.00 0.00 30.96 3.18
6137 6634 3.146847 GTTAGCTGTAACCCTTGCTTGT 58.853 45.455 0.00 0.00 37.02 3.16
6138 6635 3.146066 TGTTAGCTGTAACCCTTGCTTG 58.854 45.455 0.00 0.00 38.24 4.01
6139 6636 3.502123 TGTTAGCTGTAACCCTTGCTT 57.498 42.857 0.00 0.00 38.24 3.91
6140 6637 3.502123 TTGTTAGCTGTAACCCTTGCT 57.498 42.857 0.00 0.00 38.24 3.91
6141 6638 3.756434 TCATTGTTAGCTGTAACCCTTGC 59.244 43.478 0.00 0.00 38.24 4.01
6142 6639 5.240623 TGTTCATTGTTAGCTGTAACCCTTG 59.759 40.000 0.00 0.00 38.24 3.61
6143 6640 5.381757 TGTTCATTGTTAGCTGTAACCCTT 58.618 37.500 0.00 0.00 38.24 3.95
6144 6641 4.980573 TGTTCATTGTTAGCTGTAACCCT 58.019 39.130 0.00 0.00 38.24 4.34
6145 6642 5.897377 ATGTTCATTGTTAGCTGTAACCC 57.103 39.130 0.00 0.00 38.24 4.11
6275 6772 2.156504 GCGCAGTGGATCATATTTCTCG 59.843 50.000 0.30 0.00 0.00 4.04
6280 6777 2.854963 ACATGCGCAGTGGATCATATT 58.145 42.857 18.32 0.00 0.00 1.28
6281 6778 2.556144 ACATGCGCAGTGGATCATAT 57.444 45.000 18.32 0.00 0.00 1.78
6286 6783 1.739466 CAAAGTACATGCGCAGTGGAT 59.261 47.619 18.32 0.00 0.00 3.41
6305 6802 1.434513 ATGTTGGCTTGGTCTCCCCA 61.435 55.000 0.00 0.00 43.27 4.96
6359 6856 5.172687 TGCAGACAACCATAATAACTCCA 57.827 39.130 0.00 0.00 0.00 3.86
6437 6934 0.681175 GCTTGTCAAATGGCTTGGGT 59.319 50.000 0.00 0.00 35.56 4.51
6639 7136 2.222678 GCAAGATACATCCATGTCTGCG 59.777 50.000 0.00 0.00 41.97 5.18
7036 7534 7.066766 AGAGTATTTGAGATTGAATGAAGTGCC 59.933 37.037 0.00 0.00 0.00 5.01
7102 7600 4.104738 TGGATACTGAGAAAATCATCCCCC 59.895 45.833 0.00 0.00 34.80 5.40
7486 7991 2.871453 AGTAGGGTGCACGGAAAATTT 58.129 42.857 11.45 0.00 0.00 1.82
7498 8003 9.583765 GTTCTAACTTCTAATTGTAGTAGGGTG 57.416 37.037 0.00 0.00 30.90 4.61
7574 8079 2.474112 AGGGTATAAGGAAGACGCCAA 58.526 47.619 0.00 0.00 0.00 4.52
7843 8404 3.321968 ACCAATCAAAAGAGCCTTGTTCC 59.678 43.478 0.00 0.00 0.00 3.62
7937 8498 1.657822 TTGCGAGCAAACACAGTGTA 58.342 45.000 6.63 0.00 32.44 2.90
7987 8548 8.969260 AGTTGTGCATCTCAATGATATTCTAA 57.031 30.769 0.00 0.00 34.61 2.10
8086 8647 2.915463 CACTACATCGACACCGTTCTTC 59.085 50.000 0.00 0.00 37.05 2.87
8095 8656 3.154710 AGTTCCAGACACTACATCGACA 58.845 45.455 0.00 0.00 0.00 4.35
8213 8774 2.514205 AGCATGTTTCTTTGCCACAC 57.486 45.000 0.00 0.00 39.72 3.82
8231 8792 2.871182 TAACTCGACAGGCATGCTAG 57.129 50.000 18.92 12.79 0.00 3.42
8244 8805 5.143916 AGCGAGCACATAAAATTAACTCG 57.856 39.130 0.00 0.00 46.06 4.18
8392 8953 5.402398 CATCAAAAGGCTACACTAAAAGGC 58.598 41.667 0.00 0.00 38.50 4.35
8393 8954 5.183904 AGCATCAAAAGGCTACACTAAAAGG 59.816 40.000 0.00 0.00 41.60 3.11
8394 8955 6.259550 AGCATCAAAAGGCTACACTAAAAG 57.740 37.500 0.00 0.00 41.60 2.27
8395 8956 6.648879 AAGCATCAAAAGGCTACACTAAAA 57.351 33.333 0.00 0.00 42.84 1.52
8396 8957 6.648879 AAAGCATCAAAAGGCTACACTAAA 57.351 33.333 0.00 0.00 42.84 1.85
8397 8958 6.648879 AAAAGCATCAAAAGGCTACACTAA 57.351 33.333 0.00 0.00 42.84 2.24
8398 8959 6.128007 GCTAAAAGCATCAAAAGGCTACACTA 60.128 38.462 0.00 0.00 42.84 2.74
8399 8960 5.335976 GCTAAAAGCATCAAAAGGCTACACT 60.336 40.000 0.00 0.00 42.84 3.55
8400 8961 4.859245 GCTAAAAGCATCAAAAGGCTACAC 59.141 41.667 0.00 0.00 42.84 2.90
8401 8962 4.766891 AGCTAAAAGCATCAAAAGGCTACA 59.233 37.500 1.22 0.00 42.84 2.74
8402 8963 5.098211 CAGCTAAAAGCATCAAAAGGCTAC 58.902 41.667 1.22 0.00 42.84 3.58
8403 8964 4.380867 GCAGCTAAAAGCATCAAAAGGCTA 60.381 41.667 1.22 0.00 42.84 3.93
8404 8965 3.615834 GCAGCTAAAAGCATCAAAAGGCT 60.616 43.478 1.22 0.00 46.33 4.58
8412 8973 5.162000 AGTATTTCGCAGCTAAAAGCATC 57.838 39.130 1.22 0.00 45.56 3.91
8446 9007 4.436986 GCCTGAAGGATAACTAAAACGTGC 60.437 45.833 0.00 0.00 37.39 5.34
8461 9022 3.018856 TGTATTGCATCTTGCCTGAAGG 58.981 45.455 0.00 0.00 44.23 3.46
8534 9099 7.994425 TTACCTTCTTTGCAACAATCAGATA 57.006 32.000 0.00 0.00 0.00 1.98
8542 9107 4.935352 AGCAATTACCTTCTTTGCAACA 57.065 36.364 0.00 0.00 46.28 3.33
8543 9108 5.858581 CAGTAGCAATTACCTTCTTTGCAAC 59.141 40.000 0.00 0.00 46.28 4.17
8559 9124 1.334556 CTGTGCAAGCAACAGTAGCAA 59.665 47.619 13.07 0.00 36.91 3.91
8576 9141 1.899814 TCCGCAATAGAACACTCCTGT 59.100 47.619 0.00 0.00 0.00 4.00
8702 9268 5.647658 CACCTGTGCTATTTTCCTATTGTGA 59.352 40.000 0.00 0.00 0.00 3.58
8761 9329 1.492133 CCCCTGCTCTCCAAAGTCCA 61.492 60.000 0.00 0.00 0.00 4.02
8762 9330 1.301293 CCCCTGCTCTCCAAAGTCC 59.699 63.158 0.00 0.00 0.00 3.85
8777 9345 2.708325 AGCACTAGATGATTCTTCCCCC 59.292 50.000 0.00 0.00 33.17 5.40
8781 9349 5.461737 CCGAGAAAGCACTAGATGATTCTTC 59.538 44.000 0.00 0.00 35.31 2.87
8790 9358 0.966179 TGCACCGAGAAAGCACTAGA 59.034 50.000 0.00 0.00 32.55 2.43
8820 9388 0.108377 TGCAGTGTCCATCGCGTAAT 60.108 50.000 5.77 0.00 0.00 1.89
8827 9395 0.376152 CGAGCAATGCAGTGTCCATC 59.624 55.000 16.47 8.15 0.00 3.51
8831 9399 1.649664 ATCTCGAGCAATGCAGTGTC 58.350 50.000 16.47 10.76 0.00 3.67
8839 9407 5.127845 TCCTTTCTTGAGTATCTCGAGCAAT 59.872 40.000 7.81 0.00 40.72 3.56
8845 9413 4.803088 CAGCTTCCTTTCTTGAGTATCTCG 59.197 45.833 0.00 0.00 34.92 4.04
8846 9414 5.115480 CCAGCTTCCTTTCTTGAGTATCTC 58.885 45.833 0.00 0.00 34.92 2.75
8871 9439 5.551305 AATGTATGTACTGCCAGCTGATA 57.449 39.130 17.39 2.11 0.00 2.15
9352 9923 4.385358 AGTCCAAACAAAAACGAGCAAT 57.615 36.364 0.00 0.00 0.00 3.56
9539 10141 2.793278 TGTCGGATCATATCACGTGG 57.207 50.000 17.00 0.00 0.00 4.94
9553 10155 2.346924 CGTCGTGTTACAGTTTTGTCGG 60.347 50.000 0.00 0.00 38.76 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.