Multiple sequence alignment - TraesCS1B01G362000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G362000 chr1B 100.000 2296 0 0 1 2296 590988083 590990378 0.000000e+00 4241
1 TraesCS1B01G362000 chr1B 84.786 1446 204 10 792 2225 141767597 141766156 0.000000e+00 1437
2 TraesCS1B01G362000 chr1B 81.457 1510 238 32 796 2285 216514365 216515852 0.000000e+00 1199
3 TraesCS1B01G362000 chr1A 90.093 1504 138 6 800 2293 361956704 361955202 0.000000e+00 1941
4 TraesCS1B01G362000 chr6B 87.849 1432 159 9 792 2208 42853748 42852317 0.000000e+00 1666
5 TraesCS1B01G362000 chr7A 85.526 1444 195 9 793 2225 126553966 126555406 0.000000e+00 1496
6 TraesCS1B01G362000 chr4A 85.067 1413 197 9 824 2225 631910461 631909052 0.000000e+00 1428
7 TraesCS1B01G362000 chr2A 91.759 995 78 3 790 1782 731205720 731206712 0.000000e+00 1380
8 TraesCS1B01G362000 chr2A 88.528 523 49 5 1778 2293 731228233 731228751 6.970000e-175 623
9 TraesCS1B01G362000 chr5A 82.216 1507 248 15 796 2288 673630772 673629272 0.000000e+00 1280
10 TraesCS1B01G362000 chr6D 85.928 1137 152 8 792 1923 472212783 472211650 0.000000e+00 1206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G362000 chr1B 590988083 590990378 2295 False 4241 4241 100.000 1 2296 1 chr1B.!!$F2 2295
1 TraesCS1B01G362000 chr1B 141766156 141767597 1441 True 1437 1437 84.786 792 2225 1 chr1B.!!$R1 1433
2 TraesCS1B01G362000 chr1B 216514365 216515852 1487 False 1199 1199 81.457 796 2285 1 chr1B.!!$F1 1489
3 TraesCS1B01G362000 chr1A 361955202 361956704 1502 True 1941 1941 90.093 800 2293 1 chr1A.!!$R1 1493
4 TraesCS1B01G362000 chr6B 42852317 42853748 1431 True 1666 1666 87.849 792 2208 1 chr6B.!!$R1 1416
5 TraesCS1B01G362000 chr7A 126553966 126555406 1440 False 1496 1496 85.526 793 2225 1 chr7A.!!$F1 1432
6 TraesCS1B01G362000 chr4A 631909052 631910461 1409 True 1428 1428 85.067 824 2225 1 chr4A.!!$R1 1401
7 TraesCS1B01G362000 chr2A 731205720 731206712 992 False 1380 1380 91.759 790 1782 1 chr2A.!!$F1 992
8 TraesCS1B01G362000 chr2A 731228233 731228751 518 False 623 623 88.528 1778 2293 1 chr2A.!!$F2 515
9 TraesCS1B01G362000 chr5A 673629272 673630772 1500 True 1280 1280 82.216 796 2288 1 chr5A.!!$R1 1492
10 TraesCS1B01G362000 chr6D 472211650 472212783 1133 True 1206 1206 85.928 792 1923 1 chr6D.!!$R1 1131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 647 0.037303 CAGCGGGATCATAGGGCAAT 59.963 55.0 0.0 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2059 0.182537 CTGCCCCCGTGGATTGATTA 59.817 55.0 0.0 0.0 35.39 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.554724 TTTTTATTCTTATCTTCAACATGCGTC 57.445 29.630 0.00 0.00 0.00 5.19
38 39 7.841915 TTATTCTTATCTTCAACATGCGTCA 57.158 32.000 0.00 0.00 0.00 4.35
39 40 6.741992 ATTCTTATCTTCAACATGCGTCAA 57.258 33.333 0.00 0.00 0.00 3.18
40 41 6.741992 TTCTTATCTTCAACATGCGTCAAT 57.258 33.333 0.00 0.00 0.00 2.57
41 42 6.741992 TCTTATCTTCAACATGCGTCAATT 57.258 33.333 0.00 0.00 0.00 2.32
42 43 6.775088 TCTTATCTTCAACATGCGTCAATTC 58.225 36.000 0.00 0.00 0.00 2.17
43 44 6.595326 TCTTATCTTCAACATGCGTCAATTCT 59.405 34.615 0.00 0.00 0.00 2.40
44 45 7.763985 TCTTATCTTCAACATGCGTCAATTCTA 59.236 33.333 0.00 0.00 0.00 2.10
45 46 6.932356 ATCTTCAACATGCGTCAATTCTAT 57.068 33.333 0.00 0.00 0.00 1.98
46 47 6.741992 TCTTCAACATGCGTCAATTCTATT 57.258 33.333 0.00 0.00 0.00 1.73
47 48 6.775088 TCTTCAACATGCGTCAATTCTATTC 58.225 36.000 0.00 0.00 0.00 1.75
48 49 5.142635 TCAACATGCGTCAATTCTATTCG 57.857 39.130 0.00 0.00 0.00 3.34
49 50 3.592381 ACATGCGTCAATTCTATTCGC 57.408 42.857 0.00 0.00 45.70 4.70
53 54 3.383546 GCGTCAATTCTATTCGCACAA 57.616 42.857 0.00 0.00 45.01 3.33
54 55 3.742786 GCGTCAATTCTATTCGCACAAA 58.257 40.909 0.00 0.00 45.01 2.83
55 56 4.342772 GCGTCAATTCTATTCGCACAAAT 58.657 39.130 0.00 0.00 45.01 2.32
56 57 4.793216 GCGTCAATTCTATTCGCACAAATT 59.207 37.500 0.00 0.00 45.01 1.82
57 58 5.963004 GCGTCAATTCTATTCGCACAAATTA 59.037 36.000 0.00 0.00 45.01 1.40
58 59 6.632834 GCGTCAATTCTATTCGCACAAATTAT 59.367 34.615 0.00 0.00 45.01 1.28
59 60 7.796660 GCGTCAATTCTATTCGCACAAATTATA 59.203 33.333 0.00 0.00 45.01 0.98
60 61 9.092322 CGTCAATTCTATTCGCACAAATTATAC 57.908 33.333 0.00 0.00 0.00 1.47
61 62 9.929722 GTCAATTCTATTCGCACAAATTATACA 57.070 29.630 0.00 0.00 0.00 2.29
67 68 9.944663 TCTATTCGCACAAATTATACATTTTCC 57.055 29.630 0.00 0.00 0.00 3.13
68 69 9.180678 CTATTCGCACAAATTATACATTTTCCC 57.819 33.333 0.00 0.00 0.00 3.97
69 70 5.574082 TCGCACAAATTATACATTTTCCCG 58.426 37.500 0.00 0.00 0.00 5.14
70 71 5.124138 TCGCACAAATTATACATTTTCCCGT 59.876 36.000 0.00 0.00 0.00 5.28
71 72 6.315642 TCGCACAAATTATACATTTTCCCGTA 59.684 34.615 0.00 0.00 0.00 4.02
72 73 7.012515 TCGCACAAATTATACATTTTCCCGTAT 59.987 33.333 0.00 0.00 33.08 3.06
73 74 8.283992 CGCACAAATTATACATTTTCCCGTATA 58.716 33.333 0.00 0.00 31.02 1.47
74 75 9.389570 GCACAAATTATACATTTTCCCGTATAC 57.610 33.333 0.00 0.00 31.85 1.47
77 78 9.887406 CAAATTATACATTTTCCCGTATACACC 57.113 33.333 3.32 0.00 31.85 4.16
78 79 9.629878 AAATTATACATTTTCCCGTATACACCA 57.370 29.630 3.32 0.00 31.85 4.17
79 80 8.842358 ATTATACATTTTCCCGTATACACCAG 57.158 34.615 3.32 0.00 31.85 4.00
80 81 3.881220 ACATTTTCCCGTATACACCAGG 58.119 45.455 3.32 0.00 0.00 4.45
81 82 3.520317 ACATTTTCCCGTATACACCAGGA 59.480 43.478 3.32 0.52 0.00 3.86
82 83 4.165372 ACATTTTCCCGTATACACCAGGAT 59.835 41.667 3.32 0.00 0.00 3.24
83 84 4.411256 TTTTCCCGTATACACCAGGATC 57.589 45.455 3.32 0.00 0.00 3.36
84 85 2.759839 TCCCGTATACACCAGGATCA 57.240 50.000 3.32 0.00 0.00 2.92
85 86 3.254093 TCCCGTATACACCAGGATCAT 57.746 47.619 3.32 0.00 0.00 2.45
86 87 3.583228 TCCCGTATACACCAGGATCATT 58.417 45.455 3.32 0.00 0.00 2.57
87 88 3.576982 TCCCGTATACACCAGGATCATTC 59.423 47.826 3.32 0.00 0.00 2.67
88 89 3.578716 CCCGTATACACCAGGATCATTCT 59.421 47.826 3.32 0.00 0.00 2.40
89 90 4.040461 CCCGTATACACCAGGATCATTCTT 59.960 45.833 3.32 0.00 0.00 2.52
90 91 5.454755 CCCGTATACACCAGGATCATTCTTT 60.455 44.000 3.32 0.00 0.00 2.52
91 92 5.466728 CCGTATACACCAGGATCATTCTTTG 59.533 44.000 3.32 0.00 0.00 2.77
92 93 6.049149 CGTATACACCAGGATCATTCTTTGT 58.951 40.000 3.32 0.00 0.00 2.83
93 94 7.207383 CGTATACACCAGGATCATTCTTTGTA 58.793 38.462 3.32 0.00 0.00 2.41
94 95 7.169308 CGTATACACCAGGATCATTCTTTGTAC 59.831 40.741 3.32 0.00 0.00 2.90
95 96 5.241403 ACACCAGGATCATTCTTTGTACA 57.759 39.130 0.00 0.00 0.00 2.90
96 97 5.819991 ACACCAGGATCATTCTTTGTACAT 58.180 37.500 0.00 0.00 0.00 2.29
97 98 5.649395 ACACCAGGATCATTCTTTGTACATG 59.351 40.000 0.00 0.00 0.00 3.21
98 99 5.649395 CACCAGGATCATTCTTTGTACATGT 59.351 40.000 2.69 2.69 0.00 3.21
99 100 6.151648 CACCAGGATCATTCTTTGTACATGTT 59.848 38.462 2.30 0.00 0.00 2.71
100 101 6.721208 ACCAGGATCATTCTTTGTACATGTTT 59.279 34.615 2.30 0.00 0.00 2.83
101 102 7.031372 CCAGGATCATTCTTTGTACATGTTTG 58.969 38.462 2.30 0.00 0.00 2.93
102 103 7.094248 CCAGGATCATTCTTTGTACATGTTTGA 60.094 37.037 2.30 0.00 0.00 2.69
103 104 8.298854 CAGGATCATTCTTTGTACATGTTTGAA 58.701 33.333 2.30 2.62 0.00 2.69
104 105 8.299570 AGGATCATTCTTTGTACATGTTTGAAC 58.700 33.333 2.30 0.00 0.00 3.18
105 106 8.081633 GGATCATTCTTTGTACATGTTTGAACA 58.918 33.333 2.30 0.00 44.06 3.18
107 108 9.985730 ATCATTCTTTGTACATGTTTGAACATT 57.014 25.926 2.30 2.72 46.95 2.71
108 109 9.814899 TCATTCTTTGTACATGTTTGAACATTT 57.185 25.926 2.30 3.97 46.95 2.32
174 175 9.834628 CAATACCTATTTTGTCAAACGTATTGT 57.165 29.630 21.86 12.55 36.42 2.71
177 178 8.380743 ACCTATTTTGTCAAACGTATTGTACA 57.619 30.769 0.00 0.00 0.00 2.90
178 179 9.005777 ACCTATTTTGTCAAACGTATTGTACAT 57.994 29.630 0.00 0.00 0.00 2.29
179 180 9.834628 CCTATTTTGTCAAACGTATTGTACATT 57.165 29.630 0.00 0.00 0.00 2.71
182 183 9.959749 ATTTTGTCAAACGTATTGTACATTTCT 57.040 25.926 0.00 0.00 0.00 2.52
183 184 8.775220 TTTGTCAAACGTATTGTACATTTCTG 57.225 30.769 0.00 0.00 0.00 3.02
184 185 7.485418 TGTCAAACGTATTGTACATTTCTGT 57.515 32.000 0.00 0.00 39.49 3.41
185 186 7.348956 TGTCAAACGTATTGTACATTTCTGTG 58.651 34.615 0.00 0.00 36.79 3.66
186 187 7.011576 TGTCAAACGTATTGTACATTTCTGTGT 59.988 33.333 0.00 0.00 36.79 3.72
187 188 8.489559 GTCAAACGTATTGTACATTTCTGTGTA 58.510 33.333 0.00 0.00 36.79 2.90
188 189 9.043079 TCAAACGTATTGTACATTTCTGTGTAA 57.957 29.630 0.00 0.00 36.42 2.41
189 190 9.313323 CAAACGTATTGTACATTTCTGTGTAAG 57.687 33.333 0.00 0.00 36.42 2.34
190 191 8.597662 AACGTATTGTACATTTCTGTGTAAGT 57.402 30.769 0.00 0.00 36.42 2.24
191 192 8.236084 ACGTATTGTACATTTCTGTGTAAGTC 57.764 34.615 0.00 0.00 36.42 3.01
192 193 7.330208 ACGTATTGTACATTTCTGTGTAAGTCC 59.670 37.037 0.00 0.00 36.42 3.85
193 194 6.721571 ATTGTACATTTCTGTGTAAGTCCG 57.278 37.500 0.00 0.00 36.42 4.79
194 195 5.456548 TGTACATTTCTGTGTAAGTCCGA 57.543 39.130 0.00 0.00 36.42 4.55
195 196 5.845103 TGTACATTTCTGTGTAAGTCCGAA 58.155 37.500 0.00 0.00 36.42 4.30
196 197 6.282167 TGTACATTTCTGTGTAAGTCCGAAA 58.718 36.000 0.00 0.00 36.42 3.46
197 198 6.932400 TGTACATTTCTGTGTAAGTCCGAAAT 59.068 34.615 0.00 0.00 36.42 2.17
198 199 8.089597 TGTACATTTCTGTGTAAGTCCGAAATA 58.910 33.333 0.00 0.00 36.42 1.40
199 200 7.360575 ACATTTCTGTGTAAGTCCGAAATAC 57.639 36.000 0.00 0.00 33.83 1.89
200 201 7.159372 ACATTTCTGTGTAAGTCCGAAATACT 58.841 34.615 0.00 0.00 33.83 2.12
201 202 7.117812 ACATTTCTGTGTAAGTCCGAAATACTG 59.882 37.037 0.00 0.00 33.83 2.74
202 203 5.717078 TCTGTGTAAGTCCGAAATACTGT 57.283 39.130 0.00 0.00 0.00 3.55
203 204 6.092955 TCTGTGTAAGTCCGAAATACTGTT 57.907 37.500 0.00 0.00 0.00 3.16
204 205 6.518493 TCTGTGTAAGTCCGAAATACTGTTT 58.482 36.000 0.00 0.00 0.00 2.83
205 206 6.987992 TCTGTGTAAGTCCGAAATACTGTTTT 59.012 34.615 0.00 0.00 0.00 2.43
206 207 7.496591 TCTGTGTAAGTCCGAAATACTGTTTTT 59.503 33.333 0.00 0.00 0.00 1.94
207 208 8.659925 TGTGTAAGTCCGAAATACTGTTTTTA 57.340 30.769 0.00 0.00 0.00 1.52
208 209 9.275398 TGTGTAAGTCCGAAATACTGTTTTTAT 57.725 29.630 0.00 0.00 0.00 1.40
213 214 8.836268 AGTCCGAAATACTGTTTTTATACACA 57.164 30.769 0.00 0.00 0.00 3.72
214 215 9.444600 AGTCCGAAATACTGTTTTTATACACAT 57.555 29.630 0.00 0.00 0.00 3.21
321 322 9.746711 CTGTAGATCAAGAAAAATTTCTACACG 57.253 33.333 8.72 0.01 46.22 4.49
322 323 9.268268 TGTAGATCAAGAAAAATTTCTACACGT 57.732 29.630 8.72 0.00 46.22 4.49
341 342 9.262472 CTACACGTTTAACTTTATTTCAGATGC 57.738 33.333 0.00 0.00 0.00 3.91
342 343 7.644490 ACACGTTTAACTTTATTTCAGATGCA 58.356 30.769 0.00 0.00 0.00 3.96
343 344 8.296713 ACACGTTTAACTTTATTTCAGATGCAT 58.703 29.630 0.00 0.00 0.00 3.96
344 345 8.577939 CACGTTTAACTTTATTTCAGATGCATG 58.422 33.333 2.46 0.00 0.00 4.06
345 346 8.511321 ACGTTTAACTTTATTTCAGATGCATGA 58.489 29.630 2.46 0.00 0.00 3.07
346 347 9.507280 CGTTTAACTTTATTTCAGATGCATGAT 57.493 29.630 2.46 0.00 0.00 2.45
485 486 8.818141 TGTTTTTAAACATTGTTTCAGACACA 57.182 26.923 17.64 12.28 43.45 3.72
486 487 9.429359 TGTTTTTAAACATTGTTTCAGACACAT 57.571 25.926 17.64 0.00 43.45 3.21
490 491 9.743057 TTTAAACATTGTTTCAGACACATTAGG 57.257 29.630 17.64 0.00 38.18 2.69
491 492 7.581213 AAACATTGTTTCAGACACATTAGGA 57.419 32.000 8.97 0.00 38.18 2.94
492 493 7.581213 AACATTGTTTCAGACACATTAGGAA 57.419 32.000 0.00 0.00 38.18 3.36
493 494 7.581213 ACATTGTTTCAGACACATTAGGAAA 57.419 32.000 0.00 0.00 38.18 3.13
494 495 8.006298 ACATTGTTTCAGACACATTAGGAAAA 57.994 30.769 0.00 0.00 38.18 2.29
495 496 8.474025 ACATTGTTTCAGACACATTAGGAAAAA 58.526 29.630 0.00 0.00 38.18 1.94
564 565 9.900710 ACAAACATTTATTAGATTACGCAAACA 57.099 25.926 0.00 0.00 0.00 2.83
577 578 9.128107 AGATTACGCAAACATTTTTCTACATTG 57.872 29.630 0.00 0.00 0.00 2.82
578 579 8.810652 ATTACGCAAACATTTTTCTACATTGT 57.189 26.923 0.00 0.00 0.00 2.71
579 580 6.509317 ACGCAAACATTTTTCTACATTGTG 57.491 33.333 0.00 0.00 34.11 3.33
580 581 6.039616 ACGCAAACATTTTTCTACATTGTGT 58.960 32.000 0.00 0.00 35.80 3.72
581 582 7.197017 ACGCAAACATTTTTCTACATTGTGTA 58.803 30.769 0.00 0.00 38.01 2.90
582 583 7.702772 ACGCAAACATTTTTCTACATTGTGTAA 59.297 29.630 0.00 0.00 38.01 2.41
583 584 8.535592 CGCAAACATTTTTCTACATTGTGTAAA 58.464 29.630 0.00 0.00 31.67 2.01
584 585 9.631639 GCAAACATTTTTCTACATTGTGTAAAC 57.368 29.630 0.00 0.00 31.67 2.01
591 592 8.934507 TTTTCTACATTGTGTAAACTTTTGGG 57.065 30.769 0.00 0.00 31.67 4.12
592 593 7.648039 TTCTACATTGTGTAAACTTTTGGGT 57.352 32.000 0.00 0.00 31.67 4.51
593 594 7.266922 TCTACATTGTGTAAACTTTTGGGTC 57.733 36.000 0.00 0.00 31.67 4.46
594 595 4.927422 ACATTGTGTAAACTTTTGGGTCG 58.073 39.130 0.00 0.00 0.00 4.79
595 596 4.202070 ACATTGTGTAAACTTTTGGGTCGG 60.202 41.667 0.00 0.00 0.00 4.79
596 597 1.677052 TGTGTAAACTTTTGGGTCGGC 59.323 47.619 0.00 0.00 0.00 5.54
597 598 1.001048 GTGTAAACTTTTGGGTCGGCC 60.001 52.381 0.00 0.00 0.00 6.13
608 609 2.540145 GGTCGGCCCATTATTAGCG 58.460 57.895 0.00 0.00 0.00 4.26
609 610 1.574702 GGTCGGCCCATTATTAGCGC 61.575 60.000 0.00 0.00 0.00 5.92
610 611 1.302192 TCGGCCCATTATTAGCGCC 60.302 57.895 2.29 0.00 36.21 6.53
611 612 3.263941 GGCCCATTATTAGCGCCG 58.736 61.111 2.29 0.00 0.00 6.46
612 613 2.561373 GCCCATTATTAGCGCCGC 59.439 61.111 2.29 0.00 0.00 6.53
613 614 1.966451 GCCCATTATTAGCGCCGCT 60.966 57.895 18.67 18.67 43.41 5.52
614 615 1.868997 CCCATTATTAGCGCCGCTG 59.131 57.895 23.97 4.04 40.10 5.18
615 616 0.602638 CCCATTATTAGCGCCGCTGA 60.603 55.000 23.97 15.31 40.10 4.26
616 617 0.512952 CCATTATTAGCGCCGCTGAC 59.487 55.000 23.97 0.00 40.10 3.51
617 618 0.161658 CATTATTAGCGCCGCTGACG 59.838 55.000 23.97 0.00 40.10 4.35
628 629 2.202663 GCTGACGCGAGATGAGCA 60.203 61.111 15.93 0.00 32.86 4.26
629 630 2.229589 GCTGACGCGAGATGAGCAG 61.230 63.158 15.93 9.16 32.86 4.24
630 631 2.202663 TGACGCGAGATGAGCAGC 60.203 61.111 15.93 0.00 34.19 5.25
634 635 4.212913 GCGAGATGAGCAGCGGGA 62.213 66.667 0.00 0.00 34.19 5.14
635 636 2.733301 CGAGATGAGCAGCGGGAT 59.267 61.111 0.00 0.00 0.00 3.85
636 637 1.372748 CGAGATGAGCAGCGGGATC 60.373 63.158 0.00 0.00 0.00 3.36
641 642 2.052779 TGAGCAGCGGGATCATAGG 58.947 57.895 0.00 0.00 36.91 2.57
642 643 1.294780 GAGCAGCGGGATCATAGGG 59.705 63.158 0.00 0.00 0.00 3.53
643 644 2.359230 GCAGCGGGATCATAGGGC 60.359 66.667 0.00 0.00 0.00 5.19
644 645 3.150949 CAGCGGGATCATAGGGCA 58.849 61.111 0.00 0.00 0.00 5.36
645 646 1.451504 CAGCGGGATCATAGGGCAA 59.548 57.895 0.00 0.00 0.00 4.52
646 647 0.037303 CAGCGGGATCATAGGGCAAT 59.963 55.000 0.00 0.00 0.00 3.56
647 648 0.326264 AGCGGGATCATAGGGCAATC 59.674 55.000 0.00 0.00 0.00 2.67
648 649 0.678048 GCGGGATCATAGGGCAATCC 60.678 60.000 0.00 0.00 38.60 3.01
649 650 0.391661 CGGGATCATAGGGCAATCCG 60.392 60.000 0.00 0.00 39.95 4.18
650 651 0.984230 GGGATCATAGGGCAATCCGA 59.016 55.000 0.00 0.00 39.95 4.55
651 652 1.339151 GGGATCATAGGGCAATCCGAC 60.339 57.143 0.00 0.00 39.95 4.79
652 653 1.625818 GGATCATAGGGCAATCCGACT 59.374 52.381 0.00 0.00 41.52 4.18
653 654 2.832129 GGATCATAGGGCAATCCGACTA 59.168 50.000 0.00 0.00 41.52 2.59
654 655 3.118956 GGATCATAGGGCAATCCGACTAG 60.119 52.174 0.00 0.00 41.52 2.57
655 656 2.248248 TCATAGGGCAATCCGACTAGG 58.752 52.381 0.00 0.00 41.52 3.02
656 657 0.977395 ATAGGGCAATCCGACTAGGC 59.023 55.000 0.00 0.00 41.52 3.93
657 658 1.119574 TAGGGCAATCCGACTAGGCC 61.120 60.000 0.00 0.00 46.14 5.19
658 659 2.280186 GGCAATCCGACTAGGCCG 60.280 66.667 0.00 0.00 40.77 6.13
659 660 2.967615 GCAATCCGACTAGGCCGC 60.968 66.667 0.00 0.00 40.77 6.53
660 661 2.499205 CAATCCGACTAGGCCGCA 59.501 61.111 0.00 0.00 40.77 5.69
661 662 1.883084 CAATCCGACTAGGCCGCAC 60.883 63.158 0.00 0.00 40.77 5.34
662 663 3.426117 AATCCGACTAGGCCGCACG 62.426 63.158 0.00 2.16 40.77 5.34
664 665 3.511595 CCGACTAGGCCGCACGTA 61.512 66.667 0.00 0.00 0.00 3.57
665 666 2.719979 CGACTAGGCCGCACGTAT 59.280 61.111 0.00 0.00 0.00 3.06
666 667 1.065273 CGACTAGGCCGCACGTATT 59.935 57.895 0.00 0.00 0.00 1.89
667 668 1.206745 CGACTAGGCCGCACGTATTG 61.207 60.000 0.00 0.00 0.00 1.90
668 669 0.179119 GACTAGGCCGCACGTATTGT 60.179 55.000 0.00 0.00 0.00 2.71
669 670 1.066002 GACTAGGCCGCACGTATTGTA 59.934 52.381 0.00 0.00 0.00 2.41
670 671 1.066605 ACTAGGCCGCACGTATTGTAG 59.933 52.381 0.00 0.00 0.00 2.74
671 672 0.249155 TAGGCCGCACGTATTGTAGC 60.249 55.000 0.00 0.00 0.00 3.58
672 673 2.618839 GCCGCACGTATTGTAGCG 59.381 61.111 8.55 8.55 43.20 4.26
673 674 1.874915 GCCGCACGTATTGTAGCGA 60.875 57.895 16.11 0.00 44.98 4.93
674 675 1.808234 GCCGCACGTATTGTAGCGAG 61.808 60.000 16.11 8.15 44.98 5.03
675 676 1.553654 CGCACGTATTGTAGCGAGC 59.446 57.895 9.81 0.00 44.98 5.03
676 677 1.137459 CGCACGTATTGTAGCGAGCA 61.137 55.000 9.81 0.00 44.98 4.26
677 678 1.209128 GCACGTATTGTAGCGAGCAT 58.791 50.000 0.00 0.00 42.48 3.79
678 679 1.071239 GCACGTATTGTAGCGAGCATG 60.071 52.381 0.00 0.00 42.48 4.06
679 680 1.071239 CACGTATTGTAGCGAGCATGC 60.071 52.381 10.51 10.51 0.00 4.06
680 681 0.508641 CGTATTGTAGCGAGCATGCC 59.491 55.000 15.66 4.99 34.65 4.40
681 682 1.581934 GTATTGTAGCGAGCATGCCA 58.418 50.000 15.66 0.19 34.65 4.92
682 683 1.939934 GTATTGTAGCGAGCATGCCAA 59.060 47.619 15.66 10.67 34.65 4.52
683 684 1.019673 ATTGTAGCGAGCATGCCAAG 58.980 50.000 15.66 7.20 34.65 3.61
684 685 1.647545 TTGTAGCGAGCATGCCAAGC 61.648 55.000 15.66 17.25 34.65 4.01
685 686 2.514592 TAGCGAGCATGCCAAGCC 60.515 61.111 15.66 0.00 34.65 4.35
688 689 3.869272 CGAGCATGCCAAGCCGAC 61.869 66.667 15.66 0.00 0.00 4.79
689 690 2.437359 GAGCATGCCAAGCCGACT 60.437 61.111 15.66 0.00 0.00 4.18
690 691 1.153369 GAGCATGCCAAGCCGACTA 60.153 57.895 15.66 0.00 0.00 2.59
691 692 1.432270 GAGCATGCCAAGCCGACTAC 61.432 60.000 15.66 0.00 0.00 2.73
692 693 1.450312 GCATGCCAAGCCGACTACT 60.450 57.895 6.36 0.00 0.00 2.57
693 694 1.026718 GCATGCCAAGCCGACTACTT 61.027 55.000 6.36 0.00 0.00 2.24
694 695 1.453155 CATGCCAAGCCGACTACTTT 58.547 50.000 0.00 0.00 0.00 2.66
695 696 1.812571 CATGCCAAGCCGACTACTTTT 59.187 47.619 0.00 0.00 0.00 2.27
696 697 1.519408 TGCCAAGCCGACTACTTTTC 58.481 50.000 0.00 0.00 0.00 2.29
697 698 0.803117 GCCAAGCCGACTACTTTTCC 59.197 55.000 0.00 0.00 0.00 3.13
698 699 1.610886 GCCAAGCCGACTACTTTTCCT 60.611 52.381 0.00 0.00 0.00 3.36
699 700 2.779506 CCAAGCCGACTACTTTTCCTT 58.220 47.619 0.00 0.00 0.00 3.36
700 701 3.867216 GCCAAGCCGACTACTTTTCCTTA 60.867 47.826 0.00 0.00 0.00 2.69
701 702 4.320870 CCAAGCCGACTACTTTTCCTTAA 58.679 43.478 0.00 0.00 0.00 1.85
702 703 4.758165 CCAAGCCGACTACTTTTCCTTAAA 59.242 41.667 0.00 0.00 0.00 1.52
703 704 5.239963 CCAAGCCGACTACTTTTCCTTAAAA 59.760 40.000 0.00 0.00 33.58 1.52
704 705 6.238814 CCAAGCCGACTACTTTTCCTTAAAAA 60.239 38.462 0.00 0.00 34.26 1.94
734 735 5.818136 GCCAACTGCTCATATCAAGTAAA 57.182 39.130 0.00 0.00 36.87 2.01
735 736 5.814783 GCCAACTGCTCATATCAAGTAAAG 58.185 41.667 0.00 0.00 36.87 1.85
736 737 5.586243 GCCAACTGCTCATATCAAGTAAAGA 59.414 40.000 0.00 0.00 36.87 2.52
737 738 6.094048 GCCAACTGCTCATATCAAGTAAAGAA 59.906 38.462 0.00 0.00 36.87 2.52
738 739 7.201767 GCCAACTGCTCATATCAAGTAAAGAAT 60.202 37.037 0.00 0.00 36.87 2.40
739 740 9.330063 CCAACTGCTCATATCAAGTAAAGAATA 57.670 33.333 0.00 0.00 0.00 1.75
744 745 8.826710 TGCTCATATCAAGTAAAGAATAAACCG 58.173 33.333 0.00 0.00 0.00 4.44
745 746 9.042008 GCTCATATCAAGTAAAGAATAAACCGA 57.958 33.333 0.00 0.00 0.00 4.69
747 748 9.878667 TCATATCAAGTAAAGAATAAACCGACA 57.121 29.630 0.00 0.00 0.00 4.35
750 751 8.617290 ATCAAGTAAAGAATAAACCGACAAGT 57.383 30.769 0.00 0.00 0.00 3.16
751 752 7.857569 TCAAGTAAAGAATAAACCGACAAGTG 58.142 34.615 0.00 0.00 0.00 3.16
752 753 7.496591 TCAAGTAAAGAATAAACCGACAAGTGT 59.503 33.333 0.00 0.00 0.00 3.55
753 754 8.767085 CAAGTAAAGAATAAACCGACAAGTGTA 58.233 33.333 0.00 0.00 0.00 2.90
754 755 8.530269 AGTAAAGAATAAACCGACAAGTGTAG 57.470 34.615 0.00 0.00 0.00 2.74
755 756 5.857822 AAGAATAAACCGACAAGTGTAGC 57.142 39.130 0.00 0.00 0.00 3.58
756 757 4.890088 AGAATAAACCGACAAGTGTAGCA 58.110 39.130 0.00 0.00 0.00 3.49
757 758 5.488341 AGAATAAACCGACAAGTGTAGCAT 58.512 37.500 0.00 0.00 0.00 3.79
758 759 6.636705 AGAATAAACCGACAAGTGTAGCATA 58.363 36.000 0.00 0.00 0.00 3.14
759 760 7.272978 AGAATAAACCGACAAGTGTAGCATAT 58.727 34.615 0.00 0.00 0.00 1.78
760 761 7.438459 AGAATAAACCGACAAGTGTAGCATATC 59.562 37.037 0.00 0.00 0.00 1.63
761 762 4.737855 AACCGACAAGTGTAGCATATCT 57.262 40.909 0.00 0.00 0.00 1.98
762 763 5.847111 AACCGACAAGTGTAGCATATCTA 57.153 39.130 0.00 0.00 0.00 1.98
763 764 5.184340 ACCGACAAGTGTAGCATATCTAC 57.816 43.478 0.00 5.76 46.17 2.59
764 765 4.888239 ACCGACAAGTGTAGCATATCTACT 59.112 41.667 11.27 0.00 46.15 2.57
765 766 6.060136 ACCGACAAGTGTAGCATATCTACTA 58.940 40.000 11.27 0.00 46.15 1.82
766 767 6.544931 ACCGACAAGTGTAGCATATCTACTAA 59.455 38.462 11.27 0.00 46.15 2.24
767 768 7.067859 ACCGACAAGTGTAGCATATCTACTAAA 59.932 37.037 11.27 0.00 46.15 1.85
768 769 7.919091 CCGACAAGTGTAGCATATCTACTAAAA 59.081 37.037 11.27 0.00 46.15 1.52
769 770 8.744011 CGACAAGTGTAGCATATCTACTAAAAC 58.256 37.037 11.27 4.45 46.15 2.43
770 771 8.943909 ACAAGTGTAGCATATCTACTAAAACC 57.056 34.615 11.27 0.00 46.15 3.27
771 772 8.759782 ACAAGTGTAGCATATCTACTAAAACCT 58.240 33.333 11.27 0.00 46.15 3.50
774 775 9.080097 AGTGTAGCATATCTACTAAAACCTAGG 57.920 37.037 7.41 7.41 46.15 3.02
775 776 8.305317 GTGTAGCATATCTACTAAAACCTAGGG 58.695 40.741 14.81 0.00 46.15 3.53
776 777 6.361768 AGCATATCTACTAAAACCTAGGGC 57.638 41.667 14.81 1.04 0.00 5.19
777 778 5.844516 AGCATATCTACTAAAACCTAGGGCA 59.155 40.000 14.81 0.00 0.00 5.36
778 779 6.014156 AGCATATCTACTAAAACCTAGGGCAG 60.014 42.308 14.81 6.68 0.00 4.85
779 780 6.014499 GCATATCTACTAAAACCTAGGGCAGA 60.014 42.308 14.81 0.38 0.00 4.26
780 781 7.472945 GCATATCTACTAAAACCTAGGGCAGAA 60.473 40.741 14.81 0.00 0.00 3.02
781 782 5.672421 TCTACTAAAACCTAGGGCAGAAC 57.328 43.478 14.81 0.00 0.00 3.01
782 783 3.715638 ACTAAAACCTAGGGCAGAACC 57.284 47.619 14.81 0.00 37.93 3.62
783 784 2.983898 ACTAAAACCTAGGGCAGAACCA 59.016 45.455 14.81 0.00 42.05 3.67
784 785 3.396611 ACTAAAACCTAGGGCAGAACCAA 59.603 43.478 14.81 0.00 42.05 3.67
785 786 3.542969 AAAACCTAGGGCAGAACCAAT 57.457 42.857 14.81 0.00 42.05 3.16
786 787 4.668138 AAAACCTAGGGCAGAACCAATA 57.332 40.909 14.81 0.00 42.05 1.90
787 788 4.668138 AAACCTAGGGCAGAACCAATAA 57.332 40.909 14.81 0.00 42.05 1.40
788 789 3.933861 ACCTAGGGCAGAACCAATAAG 57.066 47.619 14.81 0.00 42.05 1.73
802 803 4.810345 ACCAATAAGTCTCTCTCCCCTAG 58.190 47.826 0.00 0.00 0.00 3.02
832 833 2.947652 CCTAGGATTTCGACGTACTCCA 59.052 50.000 1.05 0.19 0.00 3.86
865 869 1.841919 GTTTTATCCCTTCTCCCCGGA 59.158 52.381 0.73 0.00 0.00 5.14
866 870 1.802553 TTTATCCCTTCTCCCCGGAG 58.197 55.000 0.73 4.21 43.21 4.63
886 890 0.960364 GATCTTTGCTGGCGAACCCA 60.960 55.000 0.00 0.00 42.79 4.51
951 958 0.596082 CCTTGGTCCGCGTGATTTTT 59.404 50.000 4.92 0.00 0.00 1.94
959 966 0.454957 CGCGTGATTTTTGGGCAGAG 60.455 55.000 0.00 0.00 0.00 3.35
964 971 0.179189 GATTTTTGGGCAGAGCGACG 60.179 55.000 0.00 0.00 0.00 5.12
976 985 0.038892 GAGCGACGTAGGGTTTGACA 60.039 55.000 0.00 0.00 0.00 3.58
992 1001 2.640184 TGACAGTGACGGATAGATCGT 58.360 47.619 0.00 0.00 44.03 3.73
995 1004 3.770666 ACAGTGACGGATAGATCGTTTG 58.229 45.455 0.00 0.00 41.22 2.93
1007 1016 0.680921 ATCGTTTGCCTCATGGTGGG 60.681 55.000 7.57 2.66 35.27 4.61
1174 1184 3.810743 GCAAGGGTACACACTTCCAAGAT 60.811 47.826 0.00 0.00 37.54 2.40
1294 1304 3.895656 CAATTCGGATGTCTAGGGGACTA 59.104 47.826 0.00 0.00 44.74 2.59
1323 1335 0.250727 CATGTTTGAGGGTCCGTGGT 60.251 55.000 0.00 0.00 0.00 4.16
1386 1398 7.479980 TGGTTTTAAAAATCCTGATAGCATCG 58.520 34.615 1.31 0.00 0.00 3.84
1387 1399 6.918022 GGTTTTAAAAATCCTGATAGCATCGG 59.082 38.462 1.31 0.00 35.39 4.18
1457 1469 1.195115 TCCTAATCGAGCCTGCAGTT 58.805 50.000 13.81 0.00 0.00 3.16
1472 1484 1.003051 AGTTAGGGGGATGGCGTCT 59.997 57.895 6.67 0.00 0.00 4.18
1490 1502 1.742761 CTCGCATTGGTGAGGTTGAT 58.257 50.000 0.00 0.00 45.78 2.57
1506 1518 5.075493 AGGTTGATGAAGTTCAGCTGAAAT 58.925 37.500 29.99 26.46 33.24 2.17
1513 1525 3.418684 AGTTCAGCTGAAATTACCGGT 57.581 42.857 29.99 13.98 35.58 5.28
1677 1691 0.964860 CGGTGAATGTGGGCATTGGA 60.965 55.000 0.00 0.00 44.61 3.53
1694 1708 2.125512 AATGAGGAGTGCGGCGAC 60.126 61.111 12.98 6.19 0.00 5.19
1712 1726 0.949105 ACGGAGTTCACGATGCAACC 60.949 55.000 0.00 0.00 37.78 3.77
1749 1763 4.962151 GCGACTTTGTTTTAGCCGATAATC 59.038 41.667 0.00 0.00 0.00 1.75
1762 1776 3.053455 CCGATAATCTTCGCTTCAGACC 58.947 50.000 0.00 0.00 37.80 3.85
1836 1850 1.002274 GGAGGAAGAGGCAGAGGGA 59.998 63.158 0.00 0.00 0.00 4.20
1867 1881 1.792757 AACCCCAATCAGAGCTGGCA 61.793 55.000 0.00 0.00 0.00 4.92
1891 1905 4.575180 TGCACACCAGCATGAACA 57.425 50.000 0.00 0.00 40.11 3.18
2036 2053 5.163561 TGGAAGTAACAAAAGGCAGTCTTTG 60.164 40.000 0.00 0.00 44.30 2.77
2058 2075 3.492482 GCAAAATAATCAATCCACGGGGG 60.492 47.826 2.42 0.00 38.37 5.40
2084 2101 4.507916 TCCGCCGAGGGGAGAGAG 62.508 72.222 7.83 0.00 39.75 3.20
2090 2107 1.112315 CCGAGGGGAGAGAGGATGTG 61.112 65.000 0.00 0.00 34.06 3.21
2129 2147 1.871039 ACAGCGCTTGTCGTAACAAAT 59.129 42.857 7.50 0.00 44.53 2.32
2150 2174 4.637102 CCCTTGCCCCCTTTGCCA 62.637 66.667 0.00 0.00 0.00 4.92
2235 2259 2.742053 GCTTTGTTCGATGAACCAGCTA 59.258 45.455 17.29 0.00 41.05 3.32
2240 2264 4.682787 TGTTCGATGAACCAGCTACTATG 58.317 43.478 7.18 0.00 41.35 2.23
2250 2274 1.273606 CAGCTACTATGGATGGGACGG 59.726 57.143 0.00 0.00 0.00 4.79
2270 2294 0.605589 CGAGCAAGGAGACAGAAGGT 59.394 55.000 0.00 0.00 0.00 3.50
2273 2297 2.563179 GAGCAAGGAGACAGAAGGTGTA 59.437 50.000 0.00 0.00 40.56 2.90
2276 2300 3.615351 GCAAGGAGACAGAAGGTGTAGAC 60.615 52.174 0.00 0.00 40.56 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.554724 GACGCATGTTGAAGATAAGAATAAAAA 57.445 29.630 0.00 0.00 0.00 1.94
12 13 8.726068 TGACGCATGTTGAAGATAAGAATAAAA 58.274 29.630 0.00 0.00 0.00 1.52
13 14 8.262715 TGACGCATGTTGAAGATAAGAATAAA 57.737 30.769 0.00 0.00 0.00 1.40
14 15 7.841915 TGACGCATGTTGAAGATAAGAATAA 57.158 32.000 0.00 0.00 0.00 1.40
15 16 7.841915 TTGACGCATGTTGAAGATAAGAATA 57.158 32.000 0.00 0.00 0.00 1.75
16 17 6.741992 TTGACGCATGTTGAAGATAAGAAT 57.258 33.333 0.00 0.00 0.00 2.40
17 18 6.741992 ATTGACGCATGTTGAAGATAAGAA 57.258 33.333 0.00 0.00 0.00 2.52
18 19 6.595326 AGAATTGACGCATGTTGAAGATAAGA 59.405 34.615 0.00 0.00 0.00 2.10
19 20 6.779117 AGAATTGACGCATGTTGAAGATAAG 58.221 36.000 0.00 0.00 0.00 1.73
20 21 6.741992 AGAATTGACGCATGTTGAAGATAA 57.258 33.333 0.00 0.00 0.00 1.75
21 22 8.437360 AATAGAATTGACGCATGTTGAAGATA 57.563 30.769 0.00 0.00 0.00 1.98
22 23 6.932356 ATAGAATTGACGCATGTTGAAGAT 57.068 33.333 0.00 0.00 0.00 2.40
23 24 6.455513 CGAATAGAATTGACGCATGTTGAAGA 60.456 38.462 0.00 0.00 0.00 2.87
24 25 5.674148 CGAATAGAATTGACGCATGTTGAAG 59.326 40.000 0.00 0.00 0.00 3.02
25 26 5.559227 CGAATAGAATTGACGCATGTTGAA 58.441 37.500 0.00 0.00 0.00 2.69
26 27 4.494035 GCGAATAGAATTGACGCATGTTGA 60.494 41.667 0.00 0.00 46.75 3.18
27 28 3.720818 GCGAATAGAATTGACGCATGTTG 59.279 43.478 0.00 0.00 46.75 3.33
28 29 3.940303 GCGAATAGAATTGACGCATGTT 58.060 40.909 0.00 0.00 46.75 2.71
29 30 3.592381 GCGAATAGAATTGACGCATGT 57.408 42.857 0.00 0.00 46.75 3.21
34 35 9.092322 GTATAATTTGTGCGAATAGAATTGACG 57.908 33.333 0.00 0.00 0.00 4.35
35 36 9.929722 TGTATAATTTGTGCGAATAGAATTGAC 57.070 29.630 0.00 0.00 0.00 3.18
41 42 9.944663 GGAAAATGTATAATTTGTGCGAATAGA 57.055 29.630 0.00 0.00 0.00 1.98
42 43 9.180678 GGGAAAATGTATAATTTGTGCGAATAG 57.819 33.333 0.00 0.00 0.00 1.73
43 44 7.858382 CGGGAAAATGTATAATTTGTGCGAATA 59.142 33.333 0.00 0.00 0.00 1.75
44 45 6.695278 CGGGAAAATGTATAATTTGTGCGAAT 59.305 34.615 0.00 0.00 0.00 3.34
45 46 6.030849 CGGGAAAATGTATAATTTGTGCGAA 58.969 36.000 0.00 0.00 0.00 4.70
46 47 5.124138 ACGGGAAAATGTATAATTTGTGCGA 59.876 36.000 0.00 0.00 0.00 5.10
47 48 5.336744 ACGGGAAAATGTATAATTTGTGCG 58.663 37.500 0.00 0.00 0.00 5.34
48 49 9.389570 GTATACGGGAAAATGTATAATTTGTGC 57.610 33.333 0.00 0.00 35.83 4.57
51 52 9.887406 GGTGTATACGGGAAAATGTATAATTTG 57.113 33.333 0.00 0.00 35.83 2.32
52 53 9.629878 TGGTGTATACGGGAAAATGTATAATTT 57.370 29.630 0.00 0.00 35.83 1.82
53 54 9.280174 CTGGTGTATACGGGAAAATGTATAATT 57.720 33.333 0.00 0.00 35.83 1.40
54 55 7.881232 CCTGGTGTATACGGGAAAATGTATAAT 59.119 37.037 0.00 0.00 35.83 1.28
55 56 7.070946 TCCTGGTGTATACGGGAAAATGTATAA 59.929 37.037 0.00 0.00 35.83 0.98
56 57 6.554228 TCCTGGTGTATACGGGAAAATGTATA 59.446 38.462 0.00 0.00 33.54 1.47
57 58 5.367352 TCCTGGTGTATACGGGAAAATGTAT 59.633 40.000 0.00 0.00 35.55 2.29
58 59 4.715792 TCCTGGTGTATACGGGAAAATGTA 59.284 41.667 0.00 0.00 0.00 2.29
59 60 3.520317 TCCTGGTGTATACGGGAAAATGT 59.480 43.478 0.00 0.00 0.00 2.71
60 61 4.145365 TCCTGGTGTATACGGGAAAATG 57.855 45.455 0.00 0.00 0.00 2.32
61 62 4.410883 TGATCCTGGTGTATACGGGAAAAT 59.589 41.667 6.95 0.00 34.61 1.82
62 63 3.775866 TGATCCTGGTGTATACGGGAAAA 59.224 43.478 6.95 0.00 34.61 2.29
63 64 3.376636 TGATCCTGGTGTATACGGGAAA 58.623 45.455 6.95 0.00 34.61 3.13
64 65 3.035055 TGATCCTGGTGTATACGGGAA 57.965 47.619 6.95 0.00 34.61 3.97
65 66 2.759839 TGATCCTGGTGTATACGGGA 57.240 50.000 0.00 4.08 35.13 5.14
66 67 3.578716 AGAATGATCCTGGTGTATACGGG 59.421 47.826 0.00 0.00 0.00 5.28
67 68 4.873746 AGAATGATCCTGGTGTATACGG 57.126 45.455 0.00 0.00 0.00 4.02
68 69 6.049149 ACAAAGAATGATCCTGGTGTATACG 58.951 40.000 0.00 0.00 0.00 3.06
69 70 7.985184 TGTACAAAGAATGATCCTGGTGTATAC 59.015 37.037 0.00 0.00 0.00 1.47
70 71 8.084985 TGTACAAAGAATGATCCTGGTGTATA 57.915 34.615 0.00 0.00 0.00 1.47
71 72 6.957631 TGTACAAAGAATGATCCTGGTGTAT 58.042 36.000 0.00 0.00 0.00 2.29
72 73 6.367374 TGTACAAAGAATGATCCTGGTGTA 57.633 37.500 0.00 0.00 0.00 2.90
73 74 5.241403 TGTACAAAGAATGATCCTGGTGT 57.759 39.130 0.00 0.00 0.00 4.16
74 75 5.649395 ACATGTACAAAGAATGATCCTGGTG 59.351 40.000 0.00 0.00 0.00 4.17
75 76 5.819991 ACATGTACAAAGAATGATCCTGGT 58.180 37.500 0.00 0.00 0.00 4.00
76 77 6.764308 AACATGTACAAAGAATGATCCTGG 57.236 37.500 0.00 0.00 0.00 4.45
77 78 7.819644 TCAAACATGTACAAAGAATGATCCTG 58.180 34.615 0.00 0.00 0.00 3.86
78 79 8.299570 GTTCAAACATGTACAAAGAATGATCCT 58.700 33.333 0.00 0.00 0.00 3.24
79 80 8.081633 TGTTCAAACATGTACAAAGAATGATCC 58.918 33.333 0.00 2.20 33.17 3.36
148 149 9.834628 ACAATACGTTTGACAAAATAGGTATTG 57.165 29.630 28.07 28.07 42.86 1.90
151 152 9.486497 TGTACAATACGTTTGACAAAATAGGTA 57.514 29.630 14.58 3.95 0.00 3.08
152 153 8.380743 TGTACAATACGTTTGACAAAATAGGT 57.619 30.769 14.58 1.87 0.00 3.08
153 154 9.834628 AATGTACAATACGTTTGACAAAATAGG 57.165 29.630 14.58 0.00 34.39 2.57
156 157 9.959749 AGAAATGTACAATACGTTTGACAAAAT 57.040 25.926 10.18 0.00 45.19 1.82
157 158 9.227490 CAGAAATGTACAATACGTTTGACAAAA 57.773 29.630 10.18 0.00 45.19 2.44
158 159 8.399425 ACAGAAATGTACAATACGTTTGACAAA 58.601 29.630 10.18 0.00 45.19 2.83
159 160 7.853437 CACAGAAATGTACAATACGTTTGACAA 59.147 33.333 10.18 0.00 45.19 3.18
160 161 7.011576 ACACAGAAATGTACAATACGTTTGACA 59.988 33.333 10.18 13.52 45.19 3.58
161 162 7.349711 ACACAGAAATGTACAATACGTTTGAC 58.650 34.615 10.18 9.88 45.19 3.18
162 163 7.485418 ACACAGAAATGTACAATACGTTTGA 57.515 32.000 10.18 0.00 45.19 2.69
163 164 9.313323 CTTACACAGAAATGTACAATACGTTTG 57.687 33.333 10.18 0.69 45.19 2.93
165 166 8.597662 ACTTACACAGAAATGTACAATACGTT 57.402 30.769 0.00 0.00 39.46 3.99
166 167 7.330208 GGACTTACACAGAAATGTACAATACGT 59.670 37.037 0.00 0.00 34.79 3.57
167 168 7.462331 CGGACTTACACAGAAATGTACAATACG 60.462 40.741 0.00 0.00 34.79 3.06
168 169 7.543172 TCGGACTTACACAGAAATGTACAATAC 59.457 37.037 0.00 0.00 34.79 1.89
169 170 7.604549 TCGGACTTACACAGAAATGTACAATA 58.395 34.615 0.00 0.00 34.79 1.90
170 171 6.460781 TCGGACTTACACAGAAATGTACAAT 58.539 36.000 0.00 0.00 34.79 2.71
171 172 5.845103 TCGGACTTACACAGAAATGTACAA 58.155 37.500 0.00 0.00 34.79 2.41
172 173 5.456548 TCGGACTTACACAGAAATGTACA 57.543 39.130 0.00 0.00 34.79 2.90
173 174 6.774354 TTTCGGACTTACACAGAAATGTAC 57.226 37.500 0.00 0.00 34.79 2.90
174 175 8.308931 AGTATTTCGGACTTACACAGAAATGTA 58.691 33.333 0.00 0.00 40.43 2.29
175 176 7.117812 CAGTATTTCGGACTTACACAGAAATGT 59.882 37.037 0.00 0.00 40.43 2.71
176 177 7.117812 ACAGTATTTCGGACTTACACAGAAATG 59.882 37.037 0.00 0.00 40.43 2.32
177 178 7.159372 ACAGTATTTCGGACTTACACAGAAAT 58.841 34.615 0.00 0.00 42.16 2.17
178 179 6.518493 ACAGTATTTCGGACTTACACAGAAA 58.482 36.000 0.00 0.00 35.64 2.52
179 180 6.092955 ACAGTATTTCGGACTTACACAGAA 57.907 37.500 0.00 0.00 0.00 3.02
180 181 5.717078 ACAGTATTTCGGACTTACACAGA 57.283 39.130 0.00 0.00 0.00 3.41
181 182 6.780706 AAACAGTATTTCGGACTTACACAG 57.219 37.500 0.00 0.00 0.00 3.66
182 183 7.556733 AAAAACAGTATTTCGGACTTACACA 57.443 32.000 0.00 0.00 0.00 3.72
187 188 9.275398 TGTGTATAAAAACAGTATTTCGGACTT 57.725 29.630 0.00 0.00 0.00 3.01
188 189 8.836268 TGTGTATAAAAACAGTATTTCGGACT 57.164 30.769 0.00 0.00 0.00 3.85
295 296 9.746711 CGTGTAGAAATTTTTCTTGATCTACAG 57.253 33.333 10.58 5.29 45.67 2.74
296 297 9.268268 ACGTGTAGAAATTTTTCTTGATCTACA 57.732 29.630 10.58 8.84 44.70 2.74
315 316 9.262472 GCATCTGAAATAAAGTTAAACGTGTAG 57.738 33.333 0.00 0.00 0.00 2.74
316 317 8.775527 TGCATCTGAAATAAAGTTAAACGTGTA 58.224 29.630 0.00 0.00 0.00 2.90
317 318 7.644490 TGCATCTGAAATAAAGTTAAACGTGT 58.356 30.769 0.00 0.00 0.00 4.49
318 319 8.577939 CATGCATCTGAAATAAAGTTAAACGTG 58.422 33.333 0.00 0.00 0.00 4.49
319 320 8.511321 TCATGCATCTGAAATAAAGTTAAACGT 58.489 29.630 0.00 0.00 0.00 3.99
320 321 8.894409 TCATGCATCTGAAATAAAGTTAAACG 57.106 30.769 0.00 0.00 0.00 3.60
457 458 7.595502 TGTCTGAAACAATGTTTAAAAACACGT 59.404 29.630 11.71 8.20 41.34 4.49
458 459 7.890717 GTGTCTGAAACAATGTTTAAAAACACG 59.109 33.333 18.11 7.64 41.34 4.49
459 460 8.704234 TGTGTCTGAAACAATGTTTAAAAACAC 58.296 29.630 22.29 22.29 41.34 3.32
460 461 8.818141 TGTGTCTGAAACAATGTTTAAAAACA 57.182 26.923 11.71 10.47 42.15 2.83
464 465 9.743057 CCTAATGTGTCTGAAACAATGTTTAAA 57.257 29.630 11.71 2.68 40.31 1.52
465 466 9.126151 TCCTAATGTGTCTGAAACAATGTTTAA 57.874 29.630 11.71 3.32 40.31 1.52
466 467 8.684386 TCCTAATGTGTCTGAAACAATGTTTA 57.316 30.769 11.71 0.00 40.31 2.01
467 468 7.581213 TCCTAATGTGTCTGAAACAATGTTT 57.419 32.000 11.55 11.55 40.31 2.83
468 469 7.581213 TTCCTAATGTGTCTGAAACAATGTT 57.419 32.000 4.50 0.00 40.31 2.71
469 470 7.581213 TTTCCTAATGTGTCTGAAACAATGT 57.419 32.000 4.50 0.00 40.31 2.71
470 471 8.870160 TTTTTCCTAATGTGTCTGAAACAATG 57.130 30.769 4.50 0.00 40.31 2.82
538 539 9.900710 TGTTTGCGTAATCTAATAAATGTTTGT 57.099 25.926 0.00 0.00 0.00 2.83
551 552 9.128107 CAATGTAGAAAAATGTTTGCGTAATCT 57.872 29.630 0.00 0.00 0.00 2.40
552 553 8.911662 ACAATGTAGAAAAATGTTTGCGTAATC 58.088 29.630 0.00 0.00 0.00 1.75
553 554 8.698854 CACAATGTAGAAAAATGTTTGCGTAAT 58.301 29.630 0.00 0.00 0.00 1.89
554 555 7.702772 ACACAATGTAGAAAAATGTTTGCGTAA 59.297 29.630 0.00 0.00 0.00 3.18
555 556 7.197017 ACACAATGTAGAAAAATGTTTGCGTA 58.803 30.769 0.00 0.00 0.00 4.42
556 557 6.039616 ACACAATGTAGAAAAATGTTTGCGT 58.960 32.000 0.00 0.00 0.00 5.24
557 558 6.509317 ACACAATGTAGAAAAATGTTTGCG 57.491 33.333 0.00 0.00 0.00 4.85
558 559 9.631639 GTTTACACAATGTAGAAAAATGTTTGC 57.368 29.630 0.00 0.00 33.92 3.68
565 566 9.372369 CCCAAAAGTTTACACAATGTAGAAAAA 57.628 29.630 0.00 0.00 33.92 1.94
566 567 8.532819 ACCCAAAAGTTTACACAATGTAGAAAA 58.467 29.630 0.00 0.00 33.92 2.29
567 568 8.068892 ACCCAAAAGTTTACACAATGTAGAAA 57.931 30.769 0.00 0.00 33.92 2.52
568 569 7.467539 CGACCCAAAAGTTTACACAATGTAGAA 60.468 37.037 0.00 0.00 33.92 2.10
569 570 6.017770 CGACCCAAAAGTTTACACAATGTAGA 60.018 38.462 0.00 0.00 33.92 2.59
570 571 6.140110 CGACCCAAAAGTTTACACAATGTAG 58.860 40.000 0.00 0.00 33.92 2.74
571 572 5.008811 CCGACCCAAAAGTTTACACAATGTA 59.991 40.000 0.00 0.00 0.00 2.29
572 573 4.202070 CCGACCCAAAAGTTTACACAATGT 60.202 41.667 0.00 0.00 0.00 2.71
573 574 4.295051 CCGACCCAAAAGTTTACACAATG 58.705 43.478 0.00 0.00 0.00 2.82
574 575 3.243602 GCCGACCCAAAAGTTTACACAAT 60.244 43.478 0.00 0.00 0.00 2.71
575 576 2.099427 GCCGACCCAAAAGTTTACACAA 59.901 45.455 0.00 0.00 0.00 3.33
576 577 1.677052 GCCGACCCAAAAGTTTACACA 59.323 47.619 0.00 0.00 0.00 3.72
577 578 1.001048 GGCCGACCCAAAAGTTTACAC 60.001 52.381 0.00 0.00 0.00 2.90
578 579 1.320507 GGCCGACCCAAAAGTTTACA 58.679 50.000 0.00 0.00 0.00 2.41
590 591 1.574702 GCGCTAATAATGGGCCGACC 61.575 60.000 0.00 0.00 37.40 4.79
591 592 1.866925 GCGCTAATAATGGGCCGAC 59.133 57.895 0.00 0.00 37.40 4.79
592 593 4.371975 GCGCTAATAATGGGCCGA 57.628 55.556 0.00 0.00 37.40 5.54
595 596 1.966451 AGCGGCGCTAATAATGGGC 60.966 57.895 35.68 0.00 36.99 5.36
596 597 0.602638 TCAGCGGCGCTAATAATGGG 60.603 55.000 35.90 19.47 36.40 4.00
597 598 0.512952 GTCAGCGGCGCTAATAATGG 59.487 55.000 35.90 20.27 36.40 3.16
598 599 0.161658 CGTCAGCGGCGCTAATAATG 59.838 55.000 35.90 21.89 36.40 1.90
599 600 2.517598 CGTCAGCGGCGCTAATAAT 58.482 52.632 35.90 9.04 36.40 1.28
600 601 4.006532 CGTCAGCGGCGCTAATAA 57.993 55.556 35.90 17.32 36.40 1.40
611 612 2.202663 TGCTCATCTCGCGTCAGC 60.203 61.111 5.77 8.20 40.74 4.26
612 613 2.229589 GCTGCTCATCTCGCGTCAG 61.230 63.158 5.77 0.00 0.00 3.51
613 614 2.202663 GCTGCTCATCTCGCGTCA 60.203 61.111 5.77 0.00 0.00 4.35
614 615 3.318555 CGCTGCTCATCTCGCGTC 61.319 66.667 5.77 0.00 40.64 5.19
615 616 4.862092 CCGCTGCTCATCTCGCGT 62.862 66.667 5.77 0.00 43.70 6.01
617 618 3.512223 ATCCCGCTGCTCATCTCGC 62.512 63.158 0.00 0.00 0.00 5.03
618 619 1.372748 GATCCCGCTGCTCATCTCG 60.373 63.158 0.00 0.00 0.00 4.04
619 620 0.321021 ATGATCCCGCTGCTCATCTC 59.679 55.000 0.00 0.00 0.00 2.75
620 621 1.549620 CTATGATCCCGCTGCTCATCT 59.450 52.381 5.51 0.00 32.20 2.90
621 622 1.405256 CCTATGATCCCGCTGCTCATC 60.405 57.143 5.51 1.32 32.20 2.92
622 623 0.612229 CCTATGATCCCGCTGCTCAT 59.388 55.000 7.20 7.20 34.22 2.90
623 624 1.475169 CCCTATGATCCCGCTGCTCA 61.475 60.000 0.00 0.00 0.00 4.26
624 625 1.294780 CCCTATGATCCCGCTGCTC 59.705 63.158 0.00 0.00 0.00 4.26
625 626 2.888447 GCCCTATGATCCCGCTGCT 61.888 63.158 0.00 0.00 0.00 4.24
626 627 2.359230 GCCCTATGATCCCGCTGC 60.359 66.667 0.00 0.00 0.00 5.25
627 628 0.037303 ATTGCCCTATGATCCCGCTG 59.963 55.000 0.00 0.00 0.00 5.18
628 629 0.326264 GATTGCCCTATGATCCCGCT 59.674 55.000 0.00 0.00 0.00 5.52
629 630 0.678048 GGATTGCCCTATGATCCCGC 60.678 60.000 0.00 0.00 34.55 6.13
630 631 0.391661 CGGATTGCCCTATGATCCCG 60.392 60.000 0.00 0.00 36.76 5.14
631 632 0.984230 TCGGATTGCCCTATGATCCC 59.016 55.000 0.00 0.00 36.76 3.85
632 633 1.625818 AGTCGGATTGCCCTATGATCC 59.374 52.381 0.00 0.00 36.75 3.36
633 634 3.118956 CCTAGTCGGATTGCCCTATGATC 60.119 52.174 0.00 0.00 33.16 2.92
634 635 2.834549 CCTAGTCGGATTGCCCTATGAT 59.165 50.000 0.00 0.00 33.16 2.45
635 636 2.248248 CCTAGTCGGATTGCCCTATGA 58.752 52.381 0.00 0.00 33.16 2.15
636 637 1.338200 GCCTAGTCGGATTGCCCTATG 60.338 57.143 0.00 0.00 33.16 2.23
637 638 0.977395 GCCTAGTCGGATTGCCCTAT 59.023 55.000 0.00 0.00 33.16 2.57
638 639 1.119574 GGCCTAGTCGGATTGCCCTA 61.120 60.000 0.00 0.00 36.07 3.53
639 640 2.444256 GGCCTAGTCGGATTGCCCT 61.444 63.158 0.00 0.00 36.07 5.19
640 641 2.111251 GGCCTAGTCGGATTGCCC 59.889 66.667 0.00 0.00 36.07 5.36
641 642 2.280186 CGGCCTAGTCGGATTGCC 60.280 66.667 0.00 0.00 38.74 4.52
642 643 2.967615 GCGGCCTAGTCGGATTGC 60.968 66.667 0.00 0.00 33.16 3.56
643 644 1.883084 GTGCGGCCTAGTCGGATTG 60.883 63.158 0.00 0.00 31.70 2.67
644 645 2.499685 GTGCGGCCTAGTCGGATT 59.500 61.111 0.00 0.00 31.70 3.01
645 646 3.900892 CGTGCGGCCTAGTCGGAT 61.901 66.667 0.00 0.00 31.70 4.18
646 647 3.974835 TACGTGCGGCCTAGTCGGA 62.975 63.158 0.00 0.00 33.16 4.55
647 648 2.345880 AATACGTGCGGCCTAGTCGG 62.346 60.000 0.00 0.00 0.00 4.79
648 649 1.065273 AATACGTGCGGCCTAGTCG 59.935 57.895 0.00 2.94 0.00 4.18
649 650 0.179119 ACAATACGTGCGGCCTAGTC 60.179 55.000 0.00 0.00 0.00 2.59
650 651 1.066605 CTACAATACGTGCGGCCTAGT 59.933 52.381 0.00 0.00 0.00 2.57
651 652 1.767289 CTACAATACGTGCGGCCTAG 58.233 55.000 0.00 0.00 0.00 3.02
652 653 0.249155 GCTACAATACGTGCGGCCTA 60.249 55.000 0.00 0.00 0.00 3.93
653 654 1.520787 GCTACAATACGTGCGGCCT 60.521 57.895 0.00 0.00 0.00 5.19
654 655 2.867091 CGCTACAATACGTGCGGCC 61.867 63.158 7.72 0.00 39.72 6.13
655 656 1.808234 CTCGCTACAATACGTGCGGC 61.808 60.000 14.52 0.00 42.00 6.53
656 657 1.808234 GCTCGCTACAATACGTGCGG 61.808 60.000 14.52 7.57 42.00 5.69
657 658 1.553654 GCTCGCTACAATACGTGCG 59.446 57.895 9.17 9.17 42.62 5.34
658 659 1.071239 CATGCTCGCTACAATACGTGC 60.071 52.381 0.00 0.00 45.91 5.34
659 660 1.071239 GCATGCTCGCTACAATACGTG 60.071 52.381 11.37 0.00 0.00 4.49
660 661 1.209128 GCATGCTCGCTACAATACGT 58.791 50.000 11.37 0.00 0.00 3.57
661 662 0.508641 GGCATGCTCGCTACAATACG 59.491 55.000 18.92 0.00 0.00 3.06
662 663 1.581934 TGGCATGCTCGCTACAATAC 58.418 50.000 18.92 0.00 0.00 1.89
663 664 2.212652 CTTGGCATGCTCGCTACAATA 58.787 47.619 18.92 0.00 0.00 1.90
664 665 1.019673 CTTGGCATGCTCGCTACAAT 58.980 50.000 18.92 0.00 0.00 2.71
665 666 1.647545 GCTTGGCATGCTCGCTACAA 61.648 55.000 18.92 10.89 0.00 2.41
666 667 2.108514 GCTTGGCATGCTCGCTACA 61.109 57.895 18.92 2.42 0.00 2.74
667 668 2.711924 GCTTGGCATGCTCGCTAC 59.288 61.111 18.92 0.00 0.00 3.58
668 669 2.514592 GGCTTGGCATGCTCGCTA 60.515 61.111 22.54 0.00 0.00 4.26
671 672 2.906182 TAGTCGGCTTGGCATGCTCG 62.906 60.000 22.54 21.93 0.00 5.03
672 673 1.153369 TAGTCGGCTTGGCATGCTC 60.153 57.895 22.54 8.46 0.00 4.26
673 674 1.450312 GTAGTCGGCTTGGCATGCT 60.450 57.895 22.54 7.57 0.00 3.79
674 675 1.026718 AAGTAGTCGGCTTGGCATGC 61.027 55.000 16.35 16.35 0.00 4.06
675 676 1.453155 AAAGTAGTCGGCTTGGCATG 58.547 50.000 0.00 0.00 0.00 4.06
676 677 2.084546 GAAAAGTAGTCGGCTTGGCAT 58.915 47.619 0.00 0.00 0.00 4.40
677 678 1.519408 GAAAAGTAGTCGGCTTGGCA 58.481 50.000 0.00 0.00 0.00 4.92
678 679 0.803117 GGAAAAGTAGTCGGCTTGGC 59.197 55.000 0.00 0.00 0.00 4.52
679 680 2.474410 AGGAAAAGTAGTCGGCTTGG 57.526 50.000 0.00 0.00 0.00 3.61
680 681 5.934935 TTTAAGGAAAAGTAGTCGGCTTG 57.065 39.130 0.00 0.00 0.00 4.01
681 682 6.947644 TTTTTAAGGAAAAGTAGTCGGCTT 57.052 33.333 0.00 0.00 35.96 4.35
712 713 5.586243 TCTTTACTTGATATGAGCAGTTGGC 59.414 40.000 0.00 0.00 45.30 4.52
713 714 7.615582 TTCTTTACTTGATATGAGCAGTTGG 57.384 36.000 0.00 0.00 0.00 3.77
718 719 8.826710 CGGTTTATTCTTTACTTGATATGAGCA 58.173 33.333 0.00 0.00 0.00 4.26
719 720 9.042008 TCGGTTTATTCTTTACTTGATATGAGC 57.958 33.333 0.00 0.00 0.00 4.26
721 722 9.878667 TGTCGGTTTATTCTTTACTTGATATGA 57.121 29.630 0.00 0.00 0.00 2.15
724 725 9.715121 ACTTGTCGGTTTATTCTTTACTTGATA 57.285 29.630 0.00 0.00 0.00 2.15
725 726 8.504005 CACTTGTCGGTTTATTCTTTACTTGAT 58.496 33.333 0.00 0.00 0.00 2.57
726 727 7.496591 ACACTTGTCGGTTTATTCTTTACTTGA 59.503 33.333 0.00 0.00 0.00 3.02
727 728 7.636326 ACACTTGTCGGTTTATTCTTTACTTG 58.364 34.615 0.00 0.00 0.00 3.16
728 729 7.797038 ACACTTGTCGGTTTATTCTTTACTT 57.203 32.000 0.00 0.00 0.00 2.24
729 730 7.117379 GCTACACTTGTCGGTTTATTCTTTACT 59.883 37.037 0.00 0.00 0.00 2.24
730 731 7.095523 TGCTACACTTGTCGGTTTATTCTTTAC 60.096 37.037 0.00 0.00 0.00 2.01
731 732 6.930164 TGCTACACTTGTCGGTTTATTCTTTA 59.070 34.615 0.00 0.00 0.00 1.85
732 733 5.761234 TGCTACACTTGTCGGTTTATTCTTT 59.239 36.000 0.00 0.00 0.00 2.52
733 734 5.302360 TGCTACACTTGTCGGTTTATTCTT 58.698 37.500 0.00 0.00 0.00 2.52
734 735 4.890088 TGCTACACTTGTCGGTTTATTCT 58.110 39.130 0.00 0.00 0.00 2.40
735 736 5.796350 ATGCTACACTTGTCGGTTTATTC 57.204 39.130 0.00 0.00 0.00 1.75
736 737 7.272978 AGATATGCTACACTTGTCGGTTTATT 58.727 34.615 0.00 0.00 0.00 1.40
737 738 6.817184 AGATATGCTACACTTGTCGGTTTAT 58.183 36.000 0.00 0.00 0.00 1.40
738 739 6.216801 AGATATGCTACACTTGTCGGTTTA 57.783 37.500 0.00 0.00 0.00 2.01
739 740 5.086104 AGATATGCTACACTTGTCGGTTT 57.914 39.130 0.00 0.00 0.00 3.27
740 741 4.737855 AGATATGCTACACTTGTCGGTT 57.262 40.909 0.00 0.00 0.00 4.44
752 753 7.014449 TGCCCTAGGTTTTAGTAGATATGCTA 58.986 38.462 8.29 0.00 0.00 3.49
753 754 5.844516 TGCCCTAGGTTTTAGTAGATATGCT 59.155 40.000 8.29 0.00 0.00 3.79
754 755 6.014499 TCTGCCCTAGGTTTTAGTAGATATGC 60.014 42.308 8.29 0.00 0.00 3.14
755 756 7.540474 TCTGCCCTAGGTTTTAGTAGATATG 57.460 40.000 8.29 0.00 0.00 1.78
756 757 7.016366 GGTTCTGCCCTAGGTTTTAGTAGATAT 59.984 40.741 8.29 0.00 0.00 1.63
757 758 6.325804 GGTTCTGCCCTAGGTTTTAGTAGATA 59.674 42.308 8.29 0.00 0.00 1.98
758 759 5.130643 GGTTCTGCCCTAGGTTTTAGTAGAT 59.869 44.000 8.29 0.00 0.00 1.98
759 760 4.468868 GGTTCTGCCCTAGGTTTTAGTAGA 59.531 45.833 8.29 3.37 0.00 2.59
760 761 4.224370 TGGTTCTGCCCTAGGTTTTAGTAG 59.776 45.833 8.29 0.80 36.04 2.57
761 762 4.169666 TGGTTCTGCCCTAGGTTTTAGTA 58.830 43.478 8.29 0.00 36.04 1.82
762 763 2.983898 TGGTTCTGCCCTAGGTTTTAGT 59.016 45.455 8.29 0.00 36.04 2.24
763 764 3.713826 TGGTTCTGCCCTAGGTTTTAG 57.286 47.619 8.29 0.40 36.04 1.85
764 765 4.668138 ATTGGTTCTGCCCTAGGTTTTA 57.332 40.909 8.29 0.00 36.04 1.52
765 766 3.542969 ATTGGTTCTGCCCTAGGTTTT 57.457 42.857 8.29 0.00 36.04 2.43
766 767 4.044191 ACTTATTGGTTCTGCCCTAGGTTT 59.956 41.667 8.29 0.00 36.04 3.27
767 768 3.591977 ACTTATTGGTTCTGCCCTAGGTT 59.408 43.478 8.29 0.00 36.04 3.50
768 769 3.190439 ACTTATTGGTTCTGCCCTAGGT 58.810 45.455 8.29 0.00 36.04 3.08
769 770 3.456277 AGACTTATTGGTTCTGCCCTAGG 59.544 47.826 0.06 0.06 36.04 3.02
770 771 4.407296 AGAGACTTATTGGTTCTGCCCTAG 59.593 45.833 0.00 0.00 36.04 3.02
771 772 4.362677 AGAGACTTATTGGTTCTGCCCTA 58.637 43.478 0.00 0.00 36.04 3.53
772 773 3.185455 AGAGACTTATTGGTTCTGCCCT 58.815 45.455 0.00 0.00 36.04 5.19
773 774 3.198853 AGAGAGACTTATTGGTTCTGCCC 59.801 47.826 0.00 0.00 36.04 5.36
774 775 4.438148 GAGAGAGACTTATTGGTTCTGCC 58.562 47.826 0.00 0.00 37.90 4.85
775 776 4.438148 GGAGAGAGACTTATTGGTTCTGC 58.562 47.826 0.00 0.00 0.00 4.26
776 777 4.141824 GGGGAGAGAGACTTATTGGTTCTG 60.142 50.000 0.00 0.00 0.00 3.02
777 778 4.034410 GGGGAGAGAGACTTATTGGTTCT 58.966 47.826 0.00 0.00 0.00 3.01
778 779 4.034410 AGGGGAGAGAGACTTATTGGTTC 58.966 47.826 0.00 0.00 0.00 3.62
779 780 4.081695 AGGGGAGAGAGACTTATTGGTT 57.918 45.455 0.00 0.00 0.00 3.67
780 781 3.786213 AGGGGAGAGAGACTTATTGGT 57.214 47.619 0.00 0.00 0.00 3.67
781 782 4.156477 CCTAGGGGAGAGAGACTTATTGG 58.844 52.174 0.00 0.00 33.58 3.16
788 789 1.997256 TCGCCCTAGGGGAGAGAGAC 61.997 65.000 29.57 8.80 46.40 3.36
817 818 0.801067 GCGCTGGAGTACGTCGAAAT 60.801 55.000 0.00 0.00 0.00 2.17
865 869 0.678048 GGTTCGCCAGCAAAGATCCT 60.678 55.000 0.00 0.00 37.19 3.24
866 870 1.657751 GGGTTCGCCAGCAAAGATCC 61.658 60.000 0.00 0.00 39.65 3.36
886 890 0.892755 TTGATCAGCCCGAGTACGTT 59.107 50.000 0.00 0.00 37.88 3.99
946 952 0.889186 ACGTCGCTCTGCCCAAAAAT 60.889 50.000 0.00 0.00 0.00 1.82
951 958 3.449227 CCTACGTCGCTCTGCCCA 61.449 66.667 0.00 0.00 0.00 5.36
959 966 0.319297 ACTGTCAAACCCTACGTCGC 60.319 55.000 0.00 0.00 0.00 5.19
964 971 1.342174 TCCGTCACTGTCAAACCCTAC 59.658 52.381 0.00 0.00 0.00 3.18
976 985 2.481449 GGCAAACGATCTATCCGTCACT 60.481 50.000 0.00 0.00 39.57 3.41
992 1001 0.187117 TTCACCCACCATGAGGCAAA 59.813 50.000 0.00 0.00 39.06 3.68
995 1004 0.034186 TGATTCACCCACCATGAGGC 60.034 55.000 0.00 0.00 39.06 4.70
1007 1016 1.464997 GTCCCTGCGAACTTGATTCAC 59.535 52.381 0.00 0.00 37.12 3.18
1154 1164 4.724279 AATCTTGGAAGTGTGTACCCTT 57.276 40.909 0.00 0.00 0.00 3.95
1174 1184 3.439857 ACAGAGCATTAGGGCTGAAAA 57.560 42.857 0.00 0.00 45.99 2.29
1268 1278 2.548920 CCCTAGACATCCGAATTGAGCC 60.549 54.545 0.00 0.00 0.00 4.70
1294 1304 2.242043 CCTCAAACATGGCCTTGTTCT 58.758 47.619 30.78 20.06 38.85 3.01
1323 1335 5.871396 ATAACCGCCTGATCTCTAAAGAA 57.129 39.130 0.00 0.00 34.49 2.52
1386 1398 1.673665 CTGCCAGCTTGTCCAGTCC 60.674 63.158 0.00 0.00 0.00 3.85
1387 1399 0.321671 TACTGCCAGCTTGTCCAGTC 59.678 55.000 8.17 0.00 39.15 3.51
1457 1469 2.520982 CGAGACGCCATCCCCCTA 60.521 66.667 0.00 0.00 0.00 3.53
1472 1484 1.003003 TCATCAACCTCACCAATGCGA 59.997 47.619 0.00 0.00 0.00 5.10
1490 1502 3.751175 CCGGTAATTTCAGCTGAACTTCA 59.249 43.478 28.91 16.57 33.13 3.02
1506 1518 3.518705 TCACCAAAATAGCCTACCGGTAA 59.481 43.478 16.65 0.15 0.00 2.85
1513 1525 7.158021 CCAAACAAATTCACCAAAATAGCCTA 58.842 34.615 0.00 0.00 0.00 3.93
1677 1691 2.125512 GTCGCCGCACTCCTCATT 60.126 61.111 0.00 0.00 0.00 2.57
1694 1708 0.948623 TGGTTGCATCGTGAACTCCG 60.949 55.000 0.00 0.00 0.00 4.63
1712 1726 0.535102 AGTCGCCCCACTCAAACTTG 60.535 55.000 0.00 0.00 0.00 3.16
1762 1776 0.537371 AAAACCACCTCTTCCCGCTG 60.537 55.000 0.00 0.00 0.00 5.18
1806 1820 2.238144 CTCTTCCTCCTGCATTCCTTGA 59.762 50.000 0.00 0.00 0.00 3.02
1836 1850 3.266772 TGATTGGGGTTGTATTGCTCTCT 59.733 43.478 0.00 0.00 0.00 3.10
1878 1892 2.191354 CTGCGGTGTTCATGCTGGTG 62.191 60.000 0.00 0.00 0.00 4.17
2036 2053 3.492482 CCCCCGTGGATTGATTATTTTGC 60.492 47.826 0.00 0.00 35.39 3.68
2042 2059 0.182537 CTGCCCCCGTGGATTGATTA 59.817 55.000 0.00 0.00 35.39 1.75
2058 2075 2.811317 CTCGGCGGACTGAACTGC 60.811 66.667 7.21 0.00 40.94 4.40
2084 2101 4.344865 ACGGGTGCCACCACATCC 62.345 66.667 17.22 0.00 43.88 3.51
2120 2138 3.367600 GGGGCAAGGGTTTATTTGTTACG 60.368 47.826 0.00 0.00 0.00 3.18
2129 2147 0.834261 GCAAAGGGGGCAAGGGTTTA 60.834 55.000 0.00 0.00 0.00 2.01
2150 2174 2.472029 CTTGGGGAGACATAGACAGGT 58.528 52.381 0.00 0.00 0.00 4.00
2235 2259 1.456892 TCGCCGTCCCATCCATAGT 60.457 57.895 0.00 0.00 0.00 2.12
2240 2264 4.467084 TTGCTCGCCGTCCCATCC 62.467 66.667 0.00 0.00 0.00 3.51
2250 2274 0.739112 CCTTCTGTCTCCTTGCTCGC 60.739 60.000 0.00 0.00 0.00 5.03
2270 2294 2.030096 TGTATCGTTGCCGTTGTCTACA 60.030 45.455 0.00 0.00 35.01 2.74
2273 2297 1.796459 GTTGTATCGTTGCCGTTGTCT 59.204 47.619 0.00 0.00 35.01 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.